DIP Database of Interacting Proteins 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ dip@mbi.ucla.edu 611 Young Drive East; Los Angeles CA 90095; USA http://dip.doe-mbi.ucla.edu/ kroeger-2009-1 maize Zea mays (Maize) Maize anti bait coip anti bait coimmunoprecipitation anti bait coip ms participant Identification by mass spectrometry ms participant Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133835X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation kroeger-2009-2 maize Zea mays (Maize) Maize anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133842X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation kroeger-2009-3 maize Zea mays (Maize) Maize anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133839X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation kroeger-2009-4 maize Zea mays (Maize) Maize anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133841X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation kroeger-2009-5 maize Zea mays (Maize) Maize anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133840X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation kroeger-2009-6 in vitro In vitro pull down pull down weight by comassie molecular weight estimation by coomasie staining weight by comassie Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133843X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation kroeger-2009-7 maize Zea mays (Maize) Maize anti bait coip anti bait coimmunoprecipitation anti bait coip ms participant Identification by mass spectrometry ms participant Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133836X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation kroeger-2009-8 maize Zea mays (Maize) Maize anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133838X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation kroeger-2009-9 maize Zea mays (Maize) Maize anti bait coip anti bait coimmunoprecipitation anti bait coip western blot western blot Immuno blot Immuno blot Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133837X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation kroeger-2009-10 in vitro In vitro molecular sieving molecular sieving Gel Filtration Size Exclusion Chromatography Size Exclusion Chromatography Gel Filtration Sizing column weight by comassie molecular weight estimation by coomasie staining weight by comassie Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. DIP original experiment: DIP-133844X Proceedings of the National Academy of Sciences of the United States of America 2009 IMEx A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Kroeger TS., Watkins KP., Friso G., van Wijk KJ., Barkan A. Only protein-protein interactions imex curation wtf1_maize Protein WHAT'S THIS FACTOR 1, chloroplastic WTF1 ZEAMMB73_Zm00001d009618 protein protein maize Zea mays (Maize) Maize MDAKLLLPFPFAPAAATRSPKSLFLGAPLPPPPRPPPFPLRLRPRPAAVVAQAAVKRRKEAPFDTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRLIALLRRFPGVFDVVEEGVYSLRFRLTPAAERLYLDELRLRNESEGLAVAKLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRMDRGPALELTHWDPELAVSAAELAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMPYISPYADFSHLRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMIIRHPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAVPRFPRRAAVGTGEEAEGMNGSLQSRDQVSDEEYDDEDEGLSDMEDLISELSGGKSDADYEWGDGWFGENDDSPPDFGDDEVKVAMKIADGSANGSAPVPVFPDGRPRERW caf1p_maize CRS2-associated factor 1, chloroplastic CAF1 Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1 protein protein maize Zea mays (Maize) Maize MATARLPSRSFLSPAQQSYPRLPASVRLCLSHHEQPPTGPKRHRRAATSHPAFSAAARGRAKKIPIADTDEPAAGVRVTDRGISYRLDGAPFEFQYSYTEAPRARPVALREAPFMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPAPGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPPLENSYEVTKVQESFSGKESNEKVTHSGNVLAQIELVSAATSHKNWNLDEGQEKFKDSTDSDMVLNSAKDVPALFHSTGISRTEPSADIPLEYSPLNPVCDIMDPSLNCRSIPTNNCESRALVEKSEHCPDDYNLEMKRKRNDGTKGTVVLNSGSKVEGLLCLLEQAIHSGRALVLSEDELADSDLVYEKSVAFTKSIPRRLVFENTRRKSSARRNVPDNHARTKTHLVENKMLSSPVENKFIVNGGSAMQTIDHGQEFLSDVVHQGTLRVDELAKLLA rnc1_maize Ribonuclease III domain-containing protein RNC1, chloroplastic RNC1 Zm.27802 Chloroplast ribonuclease III domain protein protein protein maize Zea mays (Maize) Maize MGPPAMAFQALTLTPLPFSLHSSSRRVRVLAVAADQTPPPAPPSEPANSPSRLLRELAQRKKAVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMDEYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLFYLAFQHLDPSSERTRMRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDSRPKVMTTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPSTTSVQQALHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV caf2p_maize CRS2-associated factor 2, chloroplastic CAF2 Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 protein protein maize Zea mays (Maize) Maize MPPPPPQRPASSHVGRANLFSASPPPLSNRRYPHHRSLPLPPVSPRRRDPKKHSQQPSQEEPTDSGPTRTVTTNPAFRAAHLRTAYRKPVPPAAAAGEGEALLAADPTDAASGRAVVVGPSGLSFRLPGAPFDFQFSYSEAPRAPPLAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIREVLRPKMFKLWKSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDASTDSLSAEYMNDEPETSVAGNEEGQLEQSPDLRDDEHFDVDMFERLESSVPLGSLPIDSMIERLNSE cfm3_maize CRM-domain containing factor CFM3, chloroplastic/mitochondrial CFM3 Protein CRM FAMILY MEMBER 3 protein protein maize Zea mays (Maize) Maize MAMASSPACHFRHPPRLRLLLPLSTSAPHPWLYSWSHPRQRGRLRAPPAALDLRPEPSPSSDSDDEDAVGASRSSGRSTMSLILSRLRRAGYSGEDPRAAAPPHPPRGSVEDVFRADDGVLPNARGGFDADDEERALGDARFPWERPMPPPEAAPRSARSPTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVDYDEPEPTKKSKKNSQSLAMDFPIKGSSNPSLLPTETANSVRDSNVALVSNAAKEELVVQAPEIKYEDEIDKLLDELGPRYTDWPGSDPLPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEEARRKAASYFSSAETYAQPTVAGTLGETLEANSKYGTKHDENHADKMARTIEAARHADLVRKLEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAELVQMEDVKEQGDEELYAKLDAAYSSDDEDMEDEDDEAYLKRFDNEVAGATADDDGSDDYTSAADEADYPDSDDEAGDCSEDEGEDDEDEAAAGVSDAGFHGEVVGFSSDTDRRNHDVNEY a7udm2_maize CFM2 protein protein maize Zea mays (Maize) Maize VGSTLDPSWATGDGEASSTSRQRRRGRGRDASGSPSAPPSAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYTYPYFHHSERVDSFLDKESSDQSNSGDEDETSSQHGSSHEKSSENPVVACAEQIHVGEGNSQTIEYLNQSLSREKDTNHPVSSIKRLVFDADEGNLDIRAGNPNEQHVRLQENTHPDSPNKFGPRDRSSLVAGVGSQNKFRLQLPGEVKLAEEADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYRGKDFLPPAVSLAIEKRRKLGSSTIYKAKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTVAKDVETRLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSKRDALKRSLENQRCKSLKVHVLKLSKNIDYLRDQMNSSYYHKDMHDPSVNSVTLQQQDEEMPEVAPMSSEPEVEKWTSVEIDRALDLTKSGVPVEDMQSKVCFNKLEDDSSATAGPCLTGSSIAASSYNLIRHQNQRSSTVTSSPDGRYEGAPSKVVDAPKLDAESLSVSPLRAAPLSNQERLVLRKQALQMKKRPVLSIGRNNAITGVAKTIKTHFKKHPLAIVNIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYRGWGAEVAQKSSRESSTDEGEKEVISPQLLEAIRLECGLLPADSG crs1_maize Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic CRS1 Chloroplastic RNA splicing factor 1 Protein CHLOROPLAST RNA SPLICING 1 protein protein maize Zea mays (Maize) Maize MAPPPLPLFSPSLKAPPPPPWLHGSSTQSRDSAPPVPPLPAEATPSKFRIDSPKPAPARKNTKTAAKPLTAGVPGGRTHRAVLGIIRRVRSLELSDAPSPNSVHTSNSGAAAAAFHLTIELSPPREPGQYVVEKEKSRAVPWAAARDEGLKVALRREKKPREPTRAETELETHELRRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQQNAKHSHTFLTNVHKDDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVDSLQMVGELSEESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKLRYVTRQIRYRTP caf1-b6ttv8_maize-1 3185229 N/A 3185239 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185240 unspecified role unspecified role bait bait maize Zea mays (Maize) Maize physical association physical association false false false cfm3-b6ttv8_maize-1 3185230 N/A 3185241 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185242 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185240 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185239 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185243 unspecified role unspecified role bait bait maize Zea mays (Maize) Maize association association false false false caf2-b6ttv8_maize-1 3185231 N/A 3185243 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185244 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185241 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185240 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185239 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185242 unspecified role unspecified role bait bait maize Zea mays (Maize) Maize association association false false false cfm2-caf2-1 3185232 N/A 3185242 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185244 unspecified role unspecified role bait bait maize Zea mays (Maize) Maize physical association physical association false false false rnc1-b6ttv8_maize-1 3185233 N/A 3185243 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185242 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185240 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185239 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185241 unspecified role unspecified role bait bait maize Zea mays (Maize) Maize association association false false false b6ttv8_maize-rnc1-1 3185234 N/A 3185239 unspecified role unspecified role bait bait MBP-tag MBP-tag mbp tag maltose binding protein tag maltose binding protein tag maltose binding protein tag mbp tag n-term range n-terminal range n-term range n-term range n-terminal range n-term range false ecolx Escherichia coli N/A 3185241 unspecified role unspecified role prey prey ecolx Escherichia coli direct interaction direct interaction false false false caf2-b6ttv8_maize-2 3185235 N/A 3185239 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185242 unspecified role unspecified role bait bait maize Zea mays (Maize) Maize physical association physical association false false false caf1-b6ttv8_maize-2 3185236 N/A 3185243 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185241 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185242 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185239 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185240 unspecified role unspecified role bait bait maize Zea mays (Maize) Maize association association false false false b6ttv8_maize-caf1-1 3185237 N/A 3185243 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185245 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185241 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185242 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185240 unspecified role unspecified role prey prey maize Zea mays (Maize) Maize N/A 3185239 unspecified role unspecified role bait bait maize Zea mays (Maize) Maize association association false false false b6ttv8_maize-rnc1-2 3185238 N/A 3185239 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli N/A 3185241 unspecified role unspecified role unspecified role unspecified role ecolx Escherichia coli direct interaction direct interaction false false false