IntAct European Bioinformatics Institute IntAct intact http://www.ebi.ac.uk/ http://www.ebi.ac.uk/intact/query/${ac} EBI-[0-9]+|IA:[0-9]+ INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions. http://www.ebi.ac.uk/intact European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom http://www.ebi.ac.uk/intact/ http://www.ebi.ac.uk/ kudla-2011-1 yeast Saccharomyces cerevisiae Baker's yeast clash clash CLASH cross-linking, ligation, and sequencing of hybrids clash nucleotide sequence nucleotide sequence identification sequence cloning sequence cloning nucleotide sequence Kudla G., Granneman S., Hahn D., Beggs JD., Tollervey D. Tap-tagged Nop1, Nop56 and Nop58 were crosslinked to RNAs and immunoprecipitated. The experiments with Nop1, Nop56 and Nop 58 were clustered together and the Rna chimeras were sequenced. gkudla@gmail.com Proceedings of the National Academy of Sciences of the United States of America 2011 imex curation Only protein-protein interactions imex curation kudla-2011-2 yeast Saccharomyces cerevisiae Baker's yeast electrophoresis electrophoretic mobility-based method electrophoresis northern blot northern blot northen Kudla G., Granneman S., Hahn D., Beggs JD., Tollervey D. Tap-tagged Nop1, Nop56 and Nop58 were crosslinked to RNAs and immunoprecipitated. The experiments with Nop1, Nop56 and Nop 58 were clustered together and the Rna chimeras were sequenced. gkudla@gmail.com Proceedings of the National Academy of Sciences of the United States of America 2011 imex curation Only protein-protein interactions imex curation snr77 yeast small nucleolar RNA 77 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUCAUAUGAUGAUUAUAACAAAAACAAAAGCUGGAAUUACUGGCUGAACGAGUAUAUGUUGAUACGUUUUUGCACUAUCCUGACCUAG rrna 35s yeast Ribosomal RNA 35S Yeast rrna ribosomal rna rRNA rrna yeast Saccharomyces cerevisiae Baker's yeast AUGCGAAAGCAGUUGAAGACAAGUUCGAAAAGAGUUUGGAAACGAAUUCGAGUAGGCUUGUCGUUCGUUAUGUUUUUGUAAAUGGCCUCGUCAAACGGUGGAGAGAGUCGCUAGGUGAUCGUCAGAUCUGCCUAGUCUCUAUACAGCGUGUUUAAUUGACAUGGGUUGAUGCGUAUUGAGAGAUACAAUUUGGGAAGAAAUUCCCAGAGUGUGUUUCUUUUGCGUUUAACCUGAACAGUCUCAUCGUGGGCAUCUUGCGAUUCCAUUGGUGAGCAGCGAAGGAUUUGGUGGAUUACUAGCUAAUAGCAAUCUAUUUCAAAGAAUUCAAACUUGGGGGAAUGCCUUGUUGAAUAGCCGGUCGCAAGACUGUGAUUCUUCAAGUGUAACCUCCUCUCAAAUCAGCGAUAUCAAACGUACCAUUCCGUGAAACACCGGGGUAUCUGUUUGGUGGAACCUGAUUAGAGGAAACUCAAAGAGUGCUAUGGUAUGGUGACGGAGUGCGCUGGUCAAGAGUGUAAAAGCUUUUUGAACAGAGAGCAUUUCCGGCAGCAGAGAGACCUGAAAAAGCAAUUUUUCUGGAAUUUCAGCUGUUUCCAAACUCAAUAAGUAUCUUCUAGCAAGAGGGAAUAGGUGGGAAAAAAAAAAAGAGAUUUCGGUUUCUUUCUUUUUUACUGCUUGUUGCUUCUUCUUUUAAGAUAGUUAUCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAGCAAUUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUCGUUUAUUUGAUAGUUCCUUUACUACAUGGUAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCUUAAAAUCUCGACCCUUUGGAAGAGAUGUAUUUAUUAGAUAAAAAAUCAAUGUCUUCGGACUCUUUGAUGAUUCAUAAUAACUUUUCGAAUCGCAUGGCCUUGUGCUGGCGAUGGUUCAUUCAAAUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUUUCAACGGGUAACGGGGAAUAAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCAAUCCUAAUUCAGGGAGGUAGUGACAAUAAAUAACGAUACAGGGCCCAUUCGGGUCUUGUAAUUGGAAUGAGUACAAUGUAAAUACCUUAACGAGGAACAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGAACUUUGGGCCCGGUUGGCCGGUCCGAUUUUUUCGUGUACUGGAUUUCCAACGGGGCCUUUCCUUCUGGCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACCAGGACUUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCGUAUUGCUCGAAUAUAUUAGCAUGGAAUAAUAGAAUAGGACGUUUGGUUCUAUUUUGUUGGUUUCUAGGACCAUCGUAAUGAUUAAUAGGGACGGUCGGGGGCAUCAGUAUUCAAUUGUCAGAGGUGAAAUUCUUGGAUUUAUUGAAGACUAACUACUGCGAAAGCAUUUGCCAAGGACGUUUUCAUUAAUCAAGAACGAAAGUUAGGGGAUCGAAGAUGAUCAGAUACCGUCGUAGUCUUAACCAUAAACUAUGCCGACUAGGGAUCGGGUGGUGUUUUUUUAAUGACCCACUCGGCACCUUACGAGAAAUCAAAGUCUUUGGGUUCUGGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAAACUCACCAGGUCCAGACACAAUAAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUUUGUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCUGCUUAAUUGCGAUAACGAACGAGACCUUAACCUACUAAAUAGUGGUGCUAGCAUUUGCUGGUUAUCCACUUCUUAGAGGGACUAUCGGUUUCAAGCCGAUGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGACGUUCUGGGCCGCACGCGCGCUACACUGACGGAGCCAGCGAGUCUAACCUUGGCCGAGAGGUCUUGGUAAUCUUGUGAAACUCCGUCGUGCUGGGGAUAGAGCAUUGUAAUUAUUGCUCUUCAACGAGGAAUUCCUAGUAAGCGCAAGUCAUCAGCUUGCGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUAGUACCGAUUGAAUGGCUUAGUGAGGCCUCAGGAUCUGCUUAGAGAAGGGGGCAACUCCAUCUCAGAGCGGAGAAUUUGGACAAACUUGGUCAUUUAGAGGAACUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUAAAGAAAUUUAAUAAUUUUGAAAAUGGAUUUUUUUGUUUUGGCAAGAGCAUGAGAGCUUUUACUGGGCAAGAAGACAAGAGAUGGAGAGUCCAGCCGGGCCUGCGCUUAAGUGCGCGGUCUUGCUAGGCUUGUAAGUUUCUUUCUUGCUAUUCCAAACGGUGAGAGAUUUCUGUGCUUUUGUUAUAGGACAAUUAAAACCGUUUCAAUACAACACACUGUGGAGUUUUCAUAUCUUUGCAACUUUUUCUUUGGGCAUUCGAGCAAUCGGGGCCCAGAGGUAACAAACACAAACAAUUUUAUCUAUUCAUUAAAUUUUUGUCAAAAACAAGAAUUUUCGUAACUGGAAAUUUUAAAAUAUUAAAAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUUCCUUCUCAAACAUUCUGUUUGGUAGUGAGUGAUACUCUUUGGAGUUAACUUGAAAUUGCUGGCCUUUUCAUUGGAUGUUUUUUUUCCAAAGAGAGGUUUCUCUGCGUGCUUGAGGUAUAAUGCAAGUACGGUCGUUUUAGGUUUUACCAACUGCGGCUAAUCUUUUUUUAUACUGAGCGUAUUGGAACGUUAUCGAUAAGAAGAGAGCGUCUAGGCGAACAAUGUUCUUAAAGUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUGAAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCCUUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGUGCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGGGUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUGAUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGGGAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUCUCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCUUGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACGUAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGAGUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUAGGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGAGUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCCAGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCUCAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAAUUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCACAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGCGUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGGAGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACGUCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAGGCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAUAUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAGUUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUUAUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAAUCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAGGUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGCGGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCUUGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAACUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAAUGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGAUCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGAUAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGUAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUCGAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUACCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGCGGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUACGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGCGGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAUUUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUACGAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGUUUUUUAUUUCUUUCUAAGUGGGUACUGGCAGGAGCCGGGGCCUAGUUUAGAGAGAAGUAGACUGAACAAGUCUCUAUAAAUUUUAUUUGUCUUAAGAAUUCUAUGAUCCGGGUAAAAACAUGUAUUGUAUAUAUCUAUUAUAAUAUACGAUGAGGAUGAUAGUGUGUAAGAGUGUACCAUUUACUAAUGUAUGUAAGUUACUAUUUACUAU snr55 yeast small nuclear RNA 55 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUAUUUGAUGAAUAGACACCACAAUCGUCUUUUUUUUAUCCGGCGAUGAUUCCUUUGGAAUAUGUGCCAUGGAUUACAUCAUGCAUCACCAUCUGAUU snr59 yeast small nucleolar RNA 59 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast CUUAAUGAUGAAAACUAUUCCUUAUUCUCGACUAGUCUUUGACAAUGCUGUCGUUUAAUCACCAUCUUUCGGCUGACU snru14 yeast small nucleolar RNA U14 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UCACGGUGAUGAAAGACUGGUUCCUUAACAUUCGCAGUUUCCACGGUAGGAGUACGCUUACGAACCCAUCGUUAGUACUCUCGGUGACCGCUCUUCUUUAGAGACCUUCCUAGGAUGUCUGAGUGA snr73 yeast small nucleolar RNA 73 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUUUAUGAUGAUUUCCACAUUUCACGACGGUCAACUGCGUUUUUCGAAUGUUUAUCGAUUAACUUUGAUGAUAUUUCGCCUGUGACAGGGCGUGGUACUGAGCUUU snr39b yeast small nuclear RNA 39B Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AUUUAGUGAUGAUACUGCCGAUUCUGGCAUUCCAAAAAGUGACUAGCAAAAUUGCGAUGUUGUCAACUUAAAUUACACCAUCUUUCGGGGCUGAUA snr72 yeast-1 small nucleolar RNA 72 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUGAUGUGAUGACAACUUCUUGAGCUAUAUAUUUUCUUGAGAACAUCAAUGAAGAAAACGUCUCAUCAAAUGAUUUGCACGUCAGUCUGAUCACAAGC snr38 yeast small nucleolar RNA 38 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast CAUAAUGAUGAAAAAAAAUUUUAUCAAACAGUUAUCCCUGUCUGAAUGGGUAAUAAUAGGUAACCUCUCAUAUGUUGAUAUUUGUAUUUCUGAUA snr66 yeast-1 small nuclear RNA 66 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AUCAAAUGAUGAAAUACCAAUGCAACAGAGUCAAGCUCUGAGUUUCAAAAAGAAACAUGGACGAGAUUGCUUUUUUAUUACUGACC snr39 yeast small nucleolar RNA 39 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUUUAUGAUGAAAAUCCAUUGUAUCCCAAUACAUAUUCGACUAGUCAUUGACGAUGCUGUCGUAACUUAUCACCAUCUUUCGACUGAUU snr24 yeast u24 small nuclear RNA 24 U24 snrna small nuclear rna snRNA snrna yeast Saccharomyces cerevisiae Baker's yeast UCAAAUGAUGUAAUAACAUAUUUGCUACUUCAGAUGGAACUUUGAGUUCCGAAUGAGACAUACCAAUUAUCACCAAGAUCUCUGAUGAA snr48 yeast small nuclear RNA 48 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UCAUAAUGAUGAUUUCACUUAUACCUAUAUGUUUUUUCUGGCAUCUCUAAUGUUAGGAUGUGAAGUUUAAGUACUCUCCAUUCAAUGAAUACAAUUUUUGACAAUAUCUGAUU snr52 yeast small nucleolar RNA 52 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UACUAUGAUGAAUGACAUUAGCGUGAACAAUCUCUGAUACAAAAUCGAAAGAUUUUAGGAUUAGAAAAACUUAUGUUGCCUUCCUUCUGAAA snr56 yeast small nuclear RNA 56 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUAACAUGAUGAAAAAAUAUAUUAACACAGACCUGUACUGAACUUUUCGAAGUUUUGCAGAUAACAAUAUUGCUUUUUUUCUCUGACU snr67 yeast-1 small nucleolar RNA 67 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UAACAUGAUGACUAAGUUGUCGCCCCAAGCGGAUCUUUGAAAUGACUGAUUUUACAAACAACAAACACUGAAAAUUCUGAAA snr40 yeast small nucleolar RNA 40 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUAAAUGACGAGAAAAAAGCUGUGCACCAGUCUGAACAUGGAUGCCACAAGUACUCAGGUGUCCUAUGAAGCAUUAAGUAUACCCAAAUUUCUGAUC snr57 yeast small nuclear RNA 57 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AAGCGUGAUUAUAAAAAAUGAUUUAAAUAUUUUUCUGAGGAAGUAUAUGCAGGACAUAUUGUGAAUUAGGAAUUCUUCGUUUAUGAUC snr13 yeast small nucleolar RNA 13 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AGGAAGUUUUUUCCUUUUUAUAUGAUGAAUAUGAGUGCAUUUGGCUCGAGUUGCUGUUUGGCUUUUGCCAAAUCAGUAACGGUGUGGAAAAACUCAAGCUACCUUUUUUUACUUUUAUCUGACC snr60 yeast-1 small nuclear RNA 60 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UGUUAAUGAUGAUAACCAAAGAUGCAUAGUUCAACUGAUUGAACAUACUAUCGAAAUGAAGAUAAAAAUUUCCAUCGAAAUUAGUCUUUCGCUCCUAUCUGAAC snr76 yeast small nuclear RNA 76 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AAUGGAAAUGAGGAUCCACAGCACUGGGCACUGAGGGGGAAACAAAUAUCCUUUCAAAUGAGUGACAAUGCUUUAGCGGGCCUAGAAAACCCGCGCAACUGAUCCAUUG snru3a yeast small nuclear RNA U3a Yeast snrna small nuclear rna snRNA snrna yeast Saccharomyces cerevisiae Baker's yeast GUCGACGUACUUCAGUAUGUAAUAUACCCCAAACAUUUUACCCACAAAAAACCAGGAUUUGAAAACUAUAGCAUCUAAAAGUCUUAGGUACUAGAGUUUUCAUUUCGGAGCAGGCUUUUUGAAAAAUUUAAUUCAACCAUUGCAGCAGCUUUUGACUAACACAUUCUACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGUCCCAUAACCUUUGUACCCCAGAGUGAGAAACCGAAAUUGAAUCUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAAUUUUGCUUUGCCGUUGCAUUUGUAGUUUUUUCCUUUGGAAGUAAUUACAAUAUUUUAUGGCGCGAUGAUCUUGACCCAUCCUAUGUACUUCUUUUUUGAAGGGAUAGGGCUCUAUGGGUGGGUACAAAUGGCAGUCUGACAAGU snr18 yeast small nuclear RNA 18 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUGAAUGAUGAAUUUAAUUCUUUGGUCCGUGUUUAUGAUGGGAAGUAAGACCCCCGAUAUGAGUGACAAAAGAGAUGUGGUUGACUAUCACAGUAUCUGACG snr35 yeast small nucleolar RNA 35 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AUACAAAAUUAAUCGUGCGGAUUAAUAAUCCAGGACUAUAAAACCGUGUUGUUUAUAUCGAGUCUCUUUUGGUAUAAGCGUCAAGUCCAUCGGAGAGAUCAUCAUUUUGUUCAUCUUAAUGCCCUUUUGUGUAGGAAAUUGAGGGAAGUUUAGGCUUCUCAACAUUUUAAGACGCCUAUGCAAGGGCUGGUAGGACAGACAUGC snr68 yeast-1 small nuclear RNA 68 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UAUCAUGAUGAGCAUUUAUUUUACUGCGUUAUCGUAUUGACGGGGGCUGUUUAAGUACAGUCUGUUUUAUAAUCUAUAUUCAUUUAUAUUUUAUAUUUCUUACCGAGGAAAUUGACUCUUAACAGAUUUGCUGAAA snr190 yeast small nucleolar RNA 190 yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GGCCCUGAUGAUAAUGGUGUCUCUUCUUUCCUCGUCCGAUUCGACCAUGACGACAAGGGAUUUUAUCUCGUUCUCUUAAUGCGAAUGAUUUUGAAAAGAUGUUGCUUCUGUGACAUUUUUUUUUAAUCAUUUGUGUUUGCAAACGGGAACUUUUCUUGCCAGUGUUAUACAACACAUGCAGAUCUGAGCC snr41 yeast small nuclear RNA 41 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UCCCCUAUGAUUAAAAAUUAUUAAUCAUAUACCAAUUGUUCCGACUGAAUAGUGGUUUAACUACAUGUCGACAACCCUUUUUCGUUAAGUUUCAG snr58 yeast small nuclear RNA 58 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast CUUUAUGAUGAUAUUCUUUACGAACUUUUAGACGUUAGACUUCUGAAGGAGAUUAGACCCUCCUAUGGAAGAGAAACUCGUUAAACUUAUCUGAGU snr69 yeast small nucleolar RNA 69 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUUUAUGAUGAGACCACGUCCUUAGUGACAAUGCUAUAAACCCAGCUCUUCGAUUCGUUUUUAAUGAAAGGGAGAAGAUUUUUUUGUCAAACGCUCUGAGU snr71 yeast small nucleolar RNA 71 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast GUUAUAUGAUGAUAACCUUCUCAGCUCACUCAGAUCUUUUGAUAUGAUUGAUAAAAAUUUCCUAUCCAACAUUCAUCAAUUUAUCUGACC snr75 yeast small nucleolar RNA 75 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUAUGAUGAGAUAUUUAUAGAUGACGAGUCUGAUCAUUCGUGAAGACACAACUAUUAAAAUUACCAUUCAUGCCUUUCUGAAGCUGUUU snru3b yeast small nuclear RNA U3b Yeast snrna small nuclear rna snRNA snrna yeast Saccharomyces cerevisiae Baker's yeast GUCGACGUACUUCAGUAUGUUUUAUACCAUAUACUUUAUUAGGAAUAUAACAAAGCAUACCCAAUAAUUAGGCAAUGCGAUUGUCGUAUUCAACAACCAUCUUCUAUUUCACCAGCUUCAGGUUUUGACUAACACAUUCAACAGUAGGAUCAUUUCUAUAGGAAUCGUCACUCUUUGACUCUUCAAAAGAGCCACUGAAUCCAACUUGGUUGAUGAGCCCCAUAACCUUUGUACCCCAGAGUGAGGAAAUGAAAUCGAAUUUAAAUUAGCUUGGUCCGCAAUCCUUAGCGGUUCGGCCAUCUAUAAUUUUGAAUAAAAUUUUGCUUUGCCGUUGCAAUUGUGAUAACUUCCUUUGGAAUUUGUUGCGAUAUUUAAUGGCGCGAUGAUCUUGACCCAUCCUAUGUGCUUCCAUUUUGGAAGGAUAGGGAUUCAUGGGUGGGUACAAAUGGCAGUCUGACAAGU snr51 yeast small nuclear RNA 51 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UAUUAUGAUGAUUUUUUUAUAUUCACACUGUACUAGAUUGGUCUCUUUAACGAAGGGGCUAAUUGAUGACUACAAAAUAAAAAAUAACUGAUUUAAUGACUCUGAAA snr47 yeast small nucleolar RNA 47 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AUAUAUGAUGAUAUCCUAUAACAACAACAACAUGAAUUUCUUCGUCCGAAUCCUUUAUAGGUGGAAACAAACUUUGACAAUAGCUUUUUAACACUGAUA snr50 yeast small nuclear RNA 50 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUAGAAUGAUGAAAGAGGUAGCAAUUUGCAGCAGAUUUUUCGUGAUUGAAUCAAACAAAGAUUAACCUUUACAGAACCGCUACACUGAUA snr74 yeast small nucleolar RNA 74 snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UGCAGAAGAUGAAACAAAUUACUCAAAUAGACAAGCAUAUGUCUGAUCUUCAUGAUUGAAAAGAGCAAUUAGUGUCUGAUGCAAUUUA snr70 yeast small nucleolar RNA 70 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UGAUAUGAUGAUUUGUUGUCGACCGGGCGGACAUAUUAGUAUCUGUUAAAGGGUCGCCGUCUACUCUCAUCGUUCUUUUGUGUACAAAUUUUUUAAAGGAGCGAUGUUGAUGGCAUUAUGGUUCUUUAGUGGAGAAUUGAUGAUUGGUCACAAGACAUCUGAUU snr63 yeast small nuclear RNA 63 yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast UUUAAUGAUGAAGAUUUUAAUUUUCCGUUGGUCUAUUAAGAACAGAAGUACUUCAAAACUACUUUUUAAGACCAUCCUUUUACAGUAUUUUUUCAAUAUUGUAAAACUUCUCAUUUACUUUGUGUCUUUAUGAUCUCAUCGUUCUGGUGGACCAUAAUCAGACGCACGGUAUACUUCGUUUCUGUUGGAGAAUAUUGGGAGUCUUUUAAUGUGAUGAGUGGCCAACAUAACCUUAUAGUCAUAGUUACACUGAUU rrna 27sa2 presursor ribosomal RNA 27SA2 yeast rrna ribosomal rna rRNA rrna yeast Saccharomyces cerevisiae Baker's yeast snr4 yeast small nucleolar RNA 4 Yeast snorna small nucleolar rna snoRNA snorna yeast Saccharomyces cerevisiae Baker's yeast AACUAUUACAGUCGAUGAGGAUAGGUUAUAGUUCAUGUGUAACAUCUGUGUUUUAAAAUAACUCUAGUUAUCCGGGGCGUUUUUCACAAAGUUUGUGUAAGAUGCUUUCCUGGGUCGAUGUGGAUUGUGCCGUGGCCUUUUUCACCACCUUUAUAGCGGUGCUUUAACUAUUAAUAACUGAGGCUG rrna 5s yeast Ribosomal RNA 5S yeast rrna ribosomal rna rRNA rrna yeast Saccharomyces cerevisiae Baker's yeast GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU snr77-1 1858339 N/A 1858341 unspecified role unspecified role neutral component neutral component N/A 1858342 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, Table S1 snr55-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858343 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, TableS1 snr59-1 1858339 N/A 1858344 unspecified role unspecified role neutral component neutral component N/A 1858342 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, Table S1 snr14-1 1858339 N/A 1858345 unspecified role unspecified role neutral component neutral component N/A 1858342 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, Table S1 snr73-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858346 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, Table S1 snr39b-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858347 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, Table S1 snr72-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858348 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, Table S1 snr38-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858349 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, Table S1 snr66-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858350 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr39-1 1858339 N/A 1858351 unspecified role unspecified role neutral component neutral component N/A 1858342 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr24-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858352 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr48-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858353 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, Table S1 snr52-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858354 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 TableS1 snr56-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858355 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1, table S1 snr67-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858356 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr40-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858357 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 table S1 snr57-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858358 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr13-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858359 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr60-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858360 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr76-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858361 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr17a-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858362 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr18-1 1858339 N/A 1858363 unspecified role unspecified role neutral component neutral component N/A 1858342 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr68-1 1858339 N/A 1858364 unspecified role unspecified role neutral component neutral component N/A 1858365 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr190-1 1858339 N/A 1858364 unspecified role unspecified role neutral component neutral component N/A 1858366 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table s1 snr41-1 1858339 N/A 1858364 unspecified role unspecified role neutral component neutral component N/A 1858367 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr58-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858368 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr69-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858369 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr71-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858370 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr75-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858371 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr17b-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858372 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr76-2 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858361 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr51-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858373 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr47-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858374 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr50-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858375 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr74-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858376 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr70-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858377 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 snr63-1 1858339 N/A 1858342 unspecified role unspecified role neutral component neutral component N/A 1858378 unspecified role unspecified role neutral component neutral component physical association physical association false false false Fig1 Table S1 rrna 27-snr4-1 1858340 N/A 1858379 unspecified role unspecified role neutral component neutral component N/A 1858380 unspecified role unspecified role neutral component neutral component physical association physical association false false false S2 snr4_5srna-1 1858340 N/A 1858381 unspecified role unspecified role neutral component neutral component N/A 1858380 unspecified role unspecified role neutral component neutral component physical association physical association false false false S1 u14_27srna-1 1858340 N/A 1858379 unspecified role unspecified role neutral component neutral component N/A 1858345 unspecified role unspecified role neutral component neutral component physical association physical association false false false S1