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    <entry>
        <source releaseDate="2013-09-02+01:00">
            <names>
                <shortLabel>MINT</shortLabel>
                <fullName>MINT, Dpt of Biology, University of Rome Tor Vergata</fullName>
                <alias typeAc="MI:1041" type="synonym">MINT</alias>
            </names>
            <bibref>
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            <attributeList>
                <attribute name="url" nameAc="MI:0614">http://mint.bio.uniroma2.it/mint</attribute>
                <attribute name="url" nameAc="MI:0614">url&amp;gt;http://mint.bio.uniroma2.it/mint/</attribute>
                <attribute name="url" nameAc="MI:0614">https://mint.bio.uniroma2.it</attribute>
                <attribute name="id-validation-regexp" nameAc="MI:0628">MINT-[0-9]+</attribute>
                <attribute name="search-url" nameAc="MI:0615">https://mint.bio.uniroma2.it/index.php/results-interactions/?id=${ac}</attribute>
                <attribute name="definition">The Molecular INTeraction database (MINT) is a relational database designed to store interactions between biological molecules.</attribute>
                <attribute name="url" nameAc="MI:0614">http://mint.bio.uniroma2.it</attribute>
                <attribute name="url">http://mint.bio.uniroma2.it/mint</attribute>
            </attributeList>
        </source>
        <experimentList>
            <experimentDescription id="1167511">
                <names>
                    <shortLabel>sharadamma-2011-1</shortLabel>
                    <fullName>Synergy between the N-terminal and C-terminal domains of Mycobacterium tuberculosis HupB is essential for high-affinity binding, DNA supercoiling and inhibition of RecA-promoted strand exchange.</fullName>
                </names>
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                    <primaryRef db="mint" dbAc="MI:0471" id="MINT-8196528" refType="identity" refTypeAc="MI:0356"/>
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                        <names>
                            <shortLabel>in vitro</shortLabel>
                            <fullName>In vitro</fullName>
                        </names>
                    </hostOrganism>
                </hostOrganismList>
                <interactionDetectionMethod>
                    <names>
                        <shortLabel>crosslink</shortLabel>
                        <fullName>cross-linking study</fullName>
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                <participantIdentificationMethod>
                    <names>
                        <shortLabel>predetermined</shortLabel>
                        <fullName>predetermined participant</fullName>
                        <alias typeAc="MI:1041" type="synonym">predetermined</alias>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0396" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-1465" refType="identity" refTypeAc="MI:0356"/>
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                    </xref>
                </participantIdentificationMethod>
                <attributeList>
                    <attribute name="author-list" nameAc="MI:0636">Sharadamma N., Khan K., Kumar S., Patil KN., Hasnain SE., Muniyappa K.</attribute>
                    <attribute name="journal" nameAc="MI:0885">FEBS J. (1742-464X)</attribute>
                    <attribute name="publication year" nameAc="MI:0886">2011</attribute>
                    <attribute name="imex-exported"/>
                    <attribute name="full coverage" nameAc="MI:0957">Only protein-protein interactions</attribute>
                    <attribute name="imex curation" nameAc="MI:0959"/>
                    <attribute name="curation depth" nameAc="MI:0955">imex curation</attribute>
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            </experimentDescription>
        </experimentList>
        <interactorList>
            <interactor id="1167512">
                <names>
                    <shortLabel>dbh_myctu</shortLabel>
                    <fullName>DNA-binding protein HU homolog</fullName>
                    <alias typeAc="MI:0301" type="gene name">hup</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">hlp</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">hupB</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">lbp21</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">21 kDa laminin-2-binding protein</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">28 kDa iron-regulated protein</alias>
                    <alias typeAc="MI:0302" type="gene name synonym">Histone-like protein</alias>
                    <alias typeAc="MI:0306" type="orf name">MTCY349.01</alias>
                    <alias typeAc="MI:0305" type="locus name">Rv2986c</alias>
                </names>
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                    <primaryRef db="uniprotkb" dbAc="MI:0486" id="P9WMK7" version="SP_82" refType="identity" refTypeAc="MI:0356"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0003677" secondary="DNA binding" version="SP_43"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0000976" secondary="transcription cis-regulatory region binding" version="SP_43"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0045893" secondary="positive regulation of transcription, DNA-templated" version="SP_43"/>
                    <secondaryRef db="refseq" dbAc="MI:0481" id="NP_217502.1"/>
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                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0030261" secondary="chromosome condensation" version="SP_43"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0042262" secondary="DNA protection" version="SP_43"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR020816"/>
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                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0005829" secondary="cytosol" version="SP_43"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR000119"/>
                    <secondaryRef db="interpro" dbAc="MI:0449" id="IPR010992"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4PT4"/>
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                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0005886" secondary="plasma membrane" version="SP_43"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0097100" secondary="supercoiled DNA binding" version="SP_43"/>
                    <secondaryRef db="rcsb pdb" dbAc="MI:0460" id="4DKY"/>
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                    <secondaryRef db="refseq" dbAc="MI:0481" id="WP_003415107.1"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0010106" secondary="cellular response to iron ion starvation" version="SP_43"/>
                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0090143" secondary="nucleoid organization" version="SP_43"/>
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                    <secondaryRef db="go" dbAc="MI:0448" id="GO:0005618" secondary="cell wall" version="SP_43"/>
                    <secondaryRef db="intact" dbAc="MI:0469" id="MINT-8196539" refType="intact-secondary"/>
                </xref>
                <interactorType>
                    <names>
                        <shortLabel>protein</shortLabel>
                        <fullName>protein</fullName>
                    </names>
                    <xref>
                        <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0326" refType="identity" refTypeAc="MI:0356"/>
                        <secondaryRef db="so" dbAc="MI:0601" id="SO:0000358" refType="see-also" refTypeAc="MI:0361"/>
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                        <secondaryRef db="intact" dbAc="MI:0469" id="EBI-619654" refType="identity" refTypeAc="MI:0356"/>
                    </xref>
                </interactorType>
                <organism ncbiTaxId="83332">
                    <names>
                        <shortLabel>myctu</shortLabel>
                        <fullName>Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)</fullName>
                    </names>
                </organism>
                <sequence>MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAAKKVAKKAPAKKATKAAKKAATKAPARKAATKAPAKKAATKAPAKKAVKATKSPAKKVTKAVKKTAVKASVRKAATKAPAKKAAAKRPATKAPAKKATARRGRK</sequence>
                <attributeList>
                    <attribute name="comment" nameAc="MI:0612">mint</attribute>
                </attributeList>
            </interactor>
        </interactorList>
        <interactionList>
            <interaction imexId="IM-16764-1" id="1167513">
                <names>
                    <shortLabel>hup-1</shortLabel>
                </names>
                <xref>
                    <primaryRef db="mint" dbAc="MI:0471" id="MINT-8196567" refType="identity" refTypeAc="MI:0356"/>
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                    <secondaryRef db="intact" dbAc="MI:0469" id="EBI-7044393" refType="identity" refTypeAc="MI:0356"/>
                </xref>
                <experimentList>
                    <experimentRef>1167511</experimentRef>
                </experimentList>
                <participantList>
                    <participant id="1167514">
                        <names>
                            <shortLabel>dbh_myctu</shortLabel>
                            <alias typeAc="MI:0345" type="author assigned name">hupB</alias>
                        </names>
                        <xref>
                            <primaryRef db="mint" dbAc="MI:0471" id="MINT-8196569" refType="identity" refTypeAc="MI:0356"/>
                            <secondaryRef db="intact" dbAc="MI:0469" id="EBI-7044399" refType="identity" refTypeAc="MI:0356"/>
                        </xref>
                        <interactorRef>1167512</interactorRef>
                        <participantIdentificationMethodList>
                            <participantIdentificationMethod>
                                <names>
                                    <shortLabel>weight silver stain</shortLabel>
                                    <fullName>molecular weight estimation by silver staining</fullName>
                                    <alias typeAc="MI:1041" type="synonym">weight silver stain</alias>
                                </names>
                                <xref>
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                            </participantIdentificationMethod>
                        </participantIdentificationMethodList>
                        <biologicalRole>
                            <names>
                                <shortLabel>unspecified role</shortLabel>
                                <fullName>unspecified role</fullName>
                            </names>
                            <xref>
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                        <experimentalRoleList>
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                                <names>
                                    <shortLabel>neutral component</shortLabel>
                                    <fullName>neutral component</fullName>
                                </names>
                                <xref>
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                                </xref>
                            </experimentalRole>
                        </experimentalRoleList>
                        <experimentalPreparationList>
                            <experimentalPreparation>
                                <names>
                                    <shortLabel>purified</shortLabel>
                                    <fullName>purified</fullName>
                                </names>
                                <xref>
                                    <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0350" refType="identity" refTypeAc="MI:0356"/>
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                                    <secondaryRef db="pubmed" dbAc="MI:0446" id="14755292" refType="primary-reference" refTypeAc="MI:0358"/>
                                </xref>
                            </experimentalPreparation>
                        </experimentalPreparationList>
                        <featureList>
                            <feature id="1167515">
                                <names>
                                    <shortLabel>binding site</shortLabel>
                                </names>
                                <xref>
                                    <primaryRef db="mint" dbAc="MI:0471" id="MINT-8196574" refType="identity" refTypeAc="MI:0356"/>
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                                </xref>
                                <featureType>
                                    <names>
                                        <shortLabel>binding region</shortLabel>
                                        <fullName>binding-associated region</fullName>
                                        <alias typeAc="MI:1041" type="synonym">binding region</alias>
                                    </names>
                                    <xref>
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                                </featureType>
                                <featureDetectionMethod>
                                    <names>
                                        <shortLabel>deletion analysis</shortLabel>
                                        <fullName>deletion analysis</fullName>
                                    </names>
                                    <xref>
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                                </featureDetectionMethod>
                                <featureRangeList>
                                    <featureRange>
                                        <startStatus>
                                            <names>
                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
                                                <alias typeAc="MI:1041" type="synonym">certain</alias>
                                            </names>
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                                        <begin position="1"/>
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                                            <names>
                                                <shortLabel>certain</shortLabel>
                                                <fullName>certain sequence position</fullName>
                                                <alias typeAc="MI:1041" type="synonym">certain</alias>
                                            </names>
                                            <xref>
                                                <primaryRef db="psi-mi" dbAc="MI:0488" id="MI:0335" refType="identity" refTypeAc="MI:0356"/>
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                                        </endStatus>
                                        <end position="95"/>
                                        <isLink>false</isLink>
                                    </featureRange>
                                </featureRangeList>
                            </feature>
                        </featureList>
                    </participant>
                </participantList>
                <interactionType>
                    <names>
                        <shortLabel>direct interaction</shortLabel>
                        <fullName>direct interaction</fullName>
                    </names>
                    <xref>
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                    </xref>
                </interactionType>
                <modelled>false</modelled>
                <intraMolecular>false</intraMolecular>
                <negative>false</negative>
                <attributeList>
                    <attribute name="figure legend" nameAc="MI:0599">F2</attribute>
                    <attribute name="comment" nameAc="MI:0612">mint</attribute>
                    <attribute name="comment" nameAc="MI:0612">The oligomerization state of HupB and HupBMtbN was examined by chemical  cross-linking, we observed a slower migrating band  corresponding to a dimer of HupB or HupBMtbN (Fig. 2, lanes 3 6, left and right panels  respectively) whose intensity increased with increasing concentrations of  glutaraldehyde. Taken together, these results suggest that both HupB and HupBMtbN
occur as dimers, and exclude the possible existence of protein aggregates in solution</attribute>
                </attributeList>
            </interaction>
        </interactionList>
    </entry>
</entrySet>
