IntAct European Bioinformatics Institute IntAct intact http://www.ebi.ac.uk/ http://www.ebi.ac.uk/intact/query/${ac} EBI-[0-9]+|IA:[0-9]+ INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions. http://www.ebi.ac.uk/intact European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom http://www.ebi.ac.uk/intact/ http://www.ebi.ac.uk/ welch-2007-1 Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action. yeasx Saccharomyces cerevisiae (Baker's yeast) Baker's yeast 2 hybrid two hybrid 2H 2h Gal4 transcription regeneration two-hybrid yeast two hybrid 2-hybrid classical two hybrid classical two hybrid 2H two-hybrid 2-hybrid Gal4 transcription regeneration 2h yeast two hybrid Y2H Y-2H 2 hybrid predetermined predetermined participant predetermined Welch D., Hassan H., Blilou I., Immink R., Heidstra R., Scheres B. A Split-YFP analysis was carried out; the coding sequence of Enhanced Yellow Fluorescence Protein (EYFP, Clontech Laboratories) was fragmented into an N-terminal domain of 154 amino acids (YFP/N) and a C-terminal domain of 84 amino acids (YFP/C). b.scheres@bio.uu.nl Genes Dev. (0890-9369) 2007 Only protein-protein interactions imex curation welch-2007-2 Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action. allce Allium cepa (Onion) Onion bifc bimolecular fluorescence complementation bifc tag fluorescence tag visualisation by fluorescence tag fluorescence Welch D., Hassan H., Blilou I., Immink R., Heidstra R., Scheres B. A Split-YFP analysis was carried out; the coding sequence of Enhanced Yellow Fluorescence Protein (EYFP, Clontech Laboratories) was fragmented into an N-terminal domain of 154 amino acids (YFP/N) and a C-terminal domain of 84 amino acids (YFP/C). b.scheres@bio.uu.nl Genes Dev. (0890-9369) 2007 Only protein-protein interactions imex curation idd10_arath Zinc finger protein JACKDAW IDZ3 ID1-like zinc finger protein 3 IDD10 Protein indeterminate-domain 10 JKD F15A17.180 MOK16.6 At5g03150 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MQMIPGDPFSISSSMGGFVHQETHLHHLQQQIPDLNPNSNPNPNAKPNSSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNVMNNPNLPHGFVHRGVHHPDINAAISQFGLGFGHDLSAMHAQGLSEMVQMASTGNHHLFPSSSSSLPDFSGHHQFQIPMTSTNPSLTLSSSSTSQQTSASLQHQTLKDSSFSPLFSSSSENKQNKPLSPMSATALLQKAAQMGSTRSNSSTAPSFFAGPTMTSSSATASPPPRSSSPMMIQQQLNNFNTNVLRENHNRAPPPLSGVSTSSVDNNPFQSNRSGLNPAQQMGLTRDFLGVSNEHHPHQTGRRPFLPQELARFAPLG shr_arath Protein SHORT-ROOT SHR SGR7 Protein SHOOT GRAVITROPISM 7 At4g37650 F19F18.140 GRAS family protein 26 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MDTLFRLVSLQQQQQSDSIITNQSSLSRTSTTTTGSPQTAYHYNFPQNDVVEECFNFFMDEEDLSSSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGHHNDPSAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFGAVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWRPT scr_arath Protein SCARECROW SCR At3g54220 GRAS family protein 20 SGR1 Protein SHOOT GRAVITROPISM 1 F24B22.180 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MAESGDFNGGQPPPHSPLRTTSSGSSSSNNRGPPPPPPPPLVMVRKRLASEMSSNPDYNNSSRPPRRVSHLLDSNYNTVTPQQPPSLTAAATVSSQPNPPLSVCGFSGLPVFPSDRGGRNVMMSVQPMDQDSSSSSASPTVWVDAIIRDLIHSSTSVSIPQLIQNVRDIIFPCNPNLGALLEYRLRSLMLLDPSSSSDPSPQTFEPLYQISNNPSPPQQQQQHQQQQQQHKPPPPPIQQQERENSSTDAPPQPETVTATVPAVQTNTAEALRERKEEIKRQKQDEEGLHLLTLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGEVKFESWREKMQQCGFKGISLAGNAATQATLLLGMFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTPRS idd3_arath Zinc finger protein MAGPIE MGP IDD3 Protein indeterminate-domain 3 F11M21.23 At1g03840 PSG3 Protein POLLEN SPECIFIC GENE 3 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MTTEDQTISSSGGYVQSSSTTDHVDHHHHDQHESLNPPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATAGSNLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMKPASTLSLWSGGNINHHQQVTIEDRMAPQPHSPQEDYNWVFGNANNHGELITTSDSLITHDNNINIVQSKENANGATSLSVPSLFSSVDQITQDANAASVAVANMSATALLQKAAQMGATSSTSPTTTITTDQSAYLQSFASKSNQIVEDGGSDRFFASFGSNSVELMSNNNNGLHEIGNPRNGVTVVSGMGELQNYPWKRRRVDIGNAGGGGQTRDFLGVGVQTICHSSSINGWI stm_arath Homeobox protein SHOOT MERISTEMLESS At1g62360 F2401.9 STM protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MESGSNSTSCPMAFAGDNSDGPMCPMMMMMPPIMTSHQHHGHDHQHQQQEHDGYAYQSHHQQSSSLFLQSLAPPQGTKNKVASSSSPSSCAPAYSLMEIHHNEIVAGGINPCSSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTGCLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHHYFMDNVLGNPFPMDHISSTML ath1_arath Homeobox protein ATH1 ATH1 At4g32980 F26P21.100 protein protein arath Arabidopsis thaliana (Mouse-ear cress) Mouse-ear cress MDNNNNNNTFSSLDNVMTNQNPLLMDFIPSREDSTSFSTMLPWNTIRSDPLQMGGFDIFNSMLTNKYLSSSPRSIDVQDNRNVEFMAPPPHPPPLHPLDHLRHYDDSSNNMWGFEANSEFQAFSGVVGPSEPMMSTFGEEDFPFLISNKRNNELSLSLASDVSDECSEISLCAATRLASEQASCSSKDISNNVVTQGFSQLIFGSKYLHSVQEILSHFAAYSLDYSSRGTESGAASSAFTSRFENITEFLDGDSNNSEAGFGSTFQRRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVISAFHAATELDPQLHTRFALQTVSFLYKNLRERICKKIISMGSVLERGKDKTQETSMFHQHCLLQQLKRKNHQIWRPQRGLPEKSVSVLRNWMFQNFLHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKLNNSHIQPNGPTLRMPKSVMMSQAMHK jkd1-jkd1 JKD1 homodimer 668967 N/A 668969 unspecified role unspecified role prey prey N/A 668969 unspecified role unspecified role bait bait region required to bind necessary binding region required to bind certain certain sequence position certain certain certain sequence position certain false physical association physical association false false false Figure 6, Supplementary Figure 3 jkd1-shr JKD1 interacts with SHR 668967 N/A 668970 unspecified role unspecified role prey prey N/A 668969 unspecified role unspecified role bait bait region required to bind necessary binding region required to bind certain certain sequence position certain certain certain sequence position certain false physical association physical association false false false Figure 6, Supplementary Figure 3 jkd1-scr JKD1 interacts with SCR 668967 N/A 668971 unspecified role unspecified role prey prey N/A 668969 unspecified role unspecified role bait bait region required to bind necessary binding region required to bind certain certain sequence position certain certain certain sequence position certain false physical association physical association false false false Figure 6, Supplementary Figure 3 jkd1-mgp1 JKD1 interacts with MGP1 668967 N/A 668969 unspecified role unspecified role bait bait region required to bind necessary binding region required to bind certain certain sequence position certain certain certain sequence position certain false N/A 668972 unspecified role unspecified role prey prey physical association physical association false false false Figure 6, Supplementary Figure 3 mgp1-jkd1 MGP1 interacts with JKD1 668967 N/A 668972 unspecified role unspecified role bait bait region required to bind necessary binding region required to bind certain certain sequence position certain certain certain sequence position certain false N/A 668969 unspecified role unspecified role prey prey physical association physical association false false false Figure 6, Supplementary Figure 3 mgp1-scr MGP1 interacts with SCR 668967 N/A 668972 unspecified role unspecified role bait bait region required to bind necessary binding region required to bind certain certain sequence position certain certain certain sequence position certain false N/A 668971 unspecified role unspecified role prey prey physical association physical association false false false Figure 6, Supplementary Figure 3 The authors decribe the interaction between the two proteins as 'weak'. mgp1-shr MGP1 interacts with SHR 668967 N/A 668972 unspecified role unspecified role bait bait region required to bind necessary binding region required to bind certain certain sequence position certain certain certain sequence position certain false N/A 668970 unspecified role unspecified role prey prey physical association physical association false false false Figure 6, Supplementary Figure 3 scr-shr-8 SCR1 interacts with SHR 668967 N/A 668971 unspecified role unspecified role bait bait N/A 668970 unspecified role unspecified role prey prey physical association physical association false false false Supplementary Figure 3 shr-shr SHR homodimer 668967 N/A 668971 unspecified role unspecified role prey prey N/A 668971 unspecified role unspecified role bait bait physical association physical association false false false Supplementary Figure 3 scr-mgp1 SCR1 interacts with MGP1 668967 N/A 668971 unspecified role unspecified role bait bait N/A 668972 unspecified role unspecified role prey prey physical association physical association false false false Supplementary Figure 3 shr-mgp1 SHR interacts with MGP1 668967 N/A 668971 unspecified role unspecified role bait bait N/A 668972 unspecified role unspecified role prey prey physical association physical association false false false Supplementary Figure 3 jkd1-jkd1-1 JKD1 homodimer 668968 N/A 668969 unspecified role unspecified role neutral component neutral component N/A 668969 unspecified role unspecified role neutral component neutral component physical association physical association false false false Supplementary Table 2 jkd1-mgp1-1 JKD1 interacts with MGP1 668968 N/A 668972 unspecified role unspecified role neutral component neutral component N/A 668969 unspecified role unspecified role neutral component neutral component physical association physical association false false false Supplementary Table 2 jkd1-scr-1 JKD1 interacts with SCR 668968 N/A 668969 unspecified role unspecified role neutral component neutral component N/A 668971 unspecified role unspecified role neutral component neutral component physical association physical association false false false Supplementary Table 2 jkd1-shr-1 JKD1 interacts with SHR 668968 N/A 668969 unspecified role unspecified role neutral component neutral component N/A 668970 unspecified role unspecified role neutral component neutral component physical association physical association false false false Supplementary Table 2 shr-stm SHR interacts with STM 668968 N/A 668971 unspecified role unspecified role neutral component neutral component N/A 668973 unspecified role unspecified role neutral component neutral component physical association physical association false false false Supplementary Table 2 stm-ath1-3 STM interacts with ATH1 668968 N/A 668974 unspecified role unspecified role neutral component neutral component N/A 668973 unspecified role unspecified role neutral component neutral component physical association physical association false false false Supplementary Table 2