IntAct European Bioinformatics Institute IntAct intact http://www.ebi.ac.uk/ http://www.ebi.ac.uk/intact/query/${ac} EBI-[0-9]+|IA:[0-9]+ INTerAction database (IntAct) provides an open source database and toolkit for the storage, presentation and analysis of molecular interactions. http://www.ebi.ac.uk/intact European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge; CB10 1SD; United Kingdom http://www.ebi.ac.uk/intact/ http://www.ebi.ac.uk/ blasche-2013-1 The protein interaction network of bacteriophage lambda with its host, Escherichia coli. yeasx Saccharomyces cerevisiae (Baker's yeast) Baker's yeast 2 hybrid two hybrid 2H 2h Gal4 transcription regeneration two-hybrid yeast two hybrid 2-hybrid classical two hybrid classical two hybrid 2H two-hybrid 2-hybrid Gal4 transcription regeneration 2h yeast two hybrid Y2H Y-2H 2 hybrid predetermined predetermined participant predetermined Blasche S., Wuchty S., Rajagopala S.V., Uetz P. Virus - Publications including interactions involving viral proteins 68 phage lambda ORFs were cloned into the bait vectors pGBKT7g and pDEST32 and screened against the E. coli W3110 library of single ORF clones in the prey vectors pGADT7g and pDEST22. Each bait was tested against preys pooled in different combinations and the positive preys were identified by colony PCR and sequencing. Promiscuous baits and preys were identified and discarded and finally 144 interacting lambda-host pairs were found as multiple hits in these initial screens. This set and selected additional interactions from the initial screen were re-tested using binary Y2H tests. Out of these 162 were tested positive, yielding an overlap of 62 “high confidence” interactions", which are the ones curated in this entry. peter@uetz.us J. Virol. (0022-538X) 2013 Only protein-protein interactions imex curation nuog_ecoli NADH-quinone oxidoreductase subunit G NADH dehydrogenase I subunit G NDH-1 subunit G NUO7 nuoG b2283 JW2278 protein protein ecoli Escherichia coli (strain K12) MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRKWDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGEENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALAVRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVVLENDLHRHASAIRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNEGRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPELAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEGNNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTSVPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGTRVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ j3jzz6_lambd protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MCQSRGVFVQDYNCHTPPKLTDRRIQMDAQTRRRERRAEKQAQWKAANPLLVGVSAKPVNRPILSLNRKPKSRVESALNPIDLTVLAEYHKQIESNLQRIERKNQRTWYSKPGERGITCSGRQKIKGKSIPLI c6zcx5_lambd protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MNKEQSADDPSVDLIRVKNMLNSTISMSYPDVVIACIEHKVSLEAFRAIEAALVKHDNNMKDYSLVVD ybcw_ecoli Uncharacterized protein YbcW ybcW b0559 JW0548 protein protein ecoli Escherichia coli (strain K12) MNKEQSADDPSVDLIRVKNMLNSTISMSYPDVVIACIEHKVSLEAFRAIEAALVKHDNNMKDYSLVVD nusa_ecoli Transcription termination/antitermination protein NusA N utilization substance protein A Transcription termination/antitermination L factor JW3138 b3169 nusA protein protein ecoli Escherichia coli (strain K12) MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA This sequence has been withdrawn from Uniprot. nohd_ecoli DNA-packaging protein NU1 homolog nohD nohB JW0549 b0560 protein protein ecoli Escherichia coli (strain K12) MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERDAEIENEKLRREVEELLQASETDLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMNKAAALDELIPGLLSEYIEQSG terl_lambd Terminase, large subunit A DNA-packaging protein A Large terminase protein gpA lambdap02 protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MNISNSQVNRLRHFVRAGLRSLFRPEPQTAVEWADANYYLPKESAYQEGRWETLPFQRAIMNAMGSDYIREVNVVKSARVGYSKMLLGVYAYFIEHKQRNTLIWLPTDGDAENFMKTHVEPTIRDIPSLLALAPWYGKKHRDNTLTMKRFTNGRGFWCLGGKAAKNYREKSVDVAGYDELAAFDDDIEQEGSPTFLGDKRIEGSVWPKSIRGSTPKVRGTCQIERAASESPHFMRFHVACPHCGEEQYLKFGDKETPFGLKWTPDDPSSVFYLCEHNACVIRQQELDFTDARYICEKTGIWTRDGILWFSSSGEEIEPPDSVTFHIWTAYSPFTTWVQIVKDWMKTKGDTGKRKTFVNTTLGETWEAKIGERPDAEVMAERKEHYSAPVPDRVAYLTAGIDSQLDRYEMRVWGWGPGEESWLIDRQIIMGRHDDEQTLLRVDEAINKTYTRRNGAEMSISRICWDTGGIDPTIVYERSKKHGLFRVIPIKGASVYGKPVASMPRKRNKNGVYLTEIGTDTAKEQIYNRFTLTPEGDEPLPGAVHFPNNPDIFDLTEAQQLTAEEQVEKWVDGRKKILWDSKKRRNEALDCFVYALAALRISISRWQLDLSALLASLQEEDGAATNKKTLADYARALSGEDE clpp_ecoli ATP-dependent Clp protease proteolytic subunit clpP lopP Endopeptidase Clp Caseinolytic protease Protease Ti Heat shock protein F21.5 b0437 JW0427 protein protein ecoli Escherichia coli (strain K12) MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN g_lambd Tail assembly protein G G Gene product G Minor tail protein G Tail assembly chaperone lambdap14 protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MFLKTESFEHNGVTVTLSELSALQRIEHLALMKRQAEQAESDSNRKFTVEDAIRTGAFLVAMSLWHNHPQKTQMPSMNEAVKQIEQEVLTTWPTEAISHAENVVYRLSGMYEFVVNNAPEQTEDAGPAEPVSAGKCSTVS c6zcy3_lambd protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MTKDELIARLRSLGEQLNRDVSLTGTKEELALRVAELKEELDDTDETAGQDTPLSRENVLTGHENEVGSAQPDTVILDTSELVTVVALVKLHTDALHATRDEPVAFVLPGTAFRVSAGVAAEMTERGLARMQ eutn_ecoli Bacterial microcompartment vertex protein EutN eutN cchB yffY JW2440 b2456 Ethanolamine catabolic microcompartment shell protein EutN Ethanolamine utilization protein EutN protein protein ecoli Escherichia coli (strain K12) MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAIDNIGAGTGEWVLLVSGSSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHK yqhc_ecoli Uncharacterized HTH-type transcriptional regulator YqhC yqhC JW5849 b3010 protein protein ecoli Escherichia coli (strain K12) MLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSGLLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN regq_lambd Antitermination protein Q Q protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MRLESVAKFHSPKSPMMSDSPRATASDSLSGTDVMAAMGMAQSQAGFGMAAFCGKHELSQNDKQKAINYLMQFAHKVSGKYRGVAKLEGNTKAKVLQVLATFAYADYCRSAATPGARCRDCHGTGRAVDIAKTELWGRVVEKECGRCKGVGYSRMPASAAYRAVTMLIPNLTQPTWSRTVKPLYDALVVQCHKEESIADNILNAVTR atpe_ecoli ATP synthase epsilon chain atpC papG uncC b3731 ATP synthase F1 sector epsilon subunit JW3709 F-ATPase epsilon subunit protein protein ecoli Escherichia coli (strain K12) MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM vrpp_lambd Replication protein P P protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MKNIAAQMVNFDREQMRRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNEVNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVTAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGASV matp_ecoli Macrodomain Ter protein matP b0956 JW0939 ycbG protein protein ecoli Escherichia coli (strain K12) MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGKE noha_ecoli Prophage DNA-packing protein NohA nohA Prophage Qin DNA-packaging protein Nu1 homolog nohQ JW1541 b1548 protein protein ecoli Escherichia coli (strain K12) MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIRWYAERDAEIENEKLRREVEELRQASETDLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMNKAAALDELIPGLLSEYNRADRQYAGGSRS j7qz11_ecolx yliL BN17_06151 protein protein ecolx Escherichia coli MERGPHPRAAIYAGLQEDRASRRSGQLLTNKSFAKGIANPTKSGVFQTKTRYACMKAGVKRRTATPLFIGRFILLRFVVDHIAQHREQH proq_ecoli RNA chaperone ProQ proQ yebJ yobE yoeC JW5300 b1831 protein protein ecoli Escherichia coli (strain K12) MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVDRVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQLEEAKARVQAQRAEQQAKKREAAATAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQKPVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLNSGMSLIVRAEHLVF c6zcu8_lambd protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MSINELESEQKDWALSMLCRSGVLSPCRHHEGVYVDEGIDIESAYKYSMKVYKSNEDKSPFCNVREMTDTVQNYYHEYGGNDTCPLCTKHIDD mine_ecoli Cell division topological specificity factor minE b1174 JW1163 protein protein ecoli Escherichia coli (strain K12) MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRKDILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK yjdi_ecoli Uncharacterized protein YjdI yjdI b4126 JW4087 protein protein ecoli Escherichia coli (strain K12) MDQALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVVKVIDTCPSGALKYRHK yeiw_ecoli UPF0153 protein YeiW yeiW JW5361 b4502 protein protein ecoli Escherichia coli (strain K12) MECRPGCGACCTAPSISSPIPGMPDGKPANTPCIQLDEQQRCKIFTSPLRPKVCAGLQASAEMCGNSRQQAMTWLIDLEMLTAP c6zcv8_9caud protein protein 9CAUD_Lambda_1H12 Escherichia virus Lambda_1H12 MSNIKKYIIDYDWKASIEIEIDHDVMTEEKLHQINNFWSDSEYRLNKHGSVLNAVLIMLAQHALLIAISSDLNAYGVVCEFDWNDGNGQEGWPPMDGSEGIRITDIDTSGIFDSDDMTIKAA rs7_ecoli 30S ribosomal protein S7 rpsG Small ribosomal subunit protein uS7 JW3303 b3341 protein protein ecoli Escherichia coli (strain K12) MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRWLSLRSFSHQAGASSKQPALGYLN rl27_ecoli 50S ribosomal protein L27 rpmA Large ribosomal subunit protein bL27 JW3152 b3185 protein protein ecoli Escherichia coli (strain K12) MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE soxs_ecoli Regulatory protein SoxS soxS b4062 JW4023 protein protein ecoli Escherichia coli (strain K12) MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYRHRL rmf_ecoli Ribosome modulation factor rmf Protein E JW0936 b0953 Hibernation factor RMF protein protein ecoli Escherichia coli (strain K12) MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA pric_ecoli Primosomal replication protein N'' priC b0467 JW0456 protein protein ecoli Escherichia coli (strain K12) MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR npd_ecoli NAD-dependent protein deacylase cobB b1120 ycfY Regulatory protein SIR2 homolog JW1106 protein protein ecoli Escherichia coli (strain K12) MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA caif_ecoli Transcriptional activatory protein CaiF caiF b0034 JW0033 protein protein ecoli Escherichia coli (strain K12) MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR c6zcx1_lambd Endolysin Lysis protein Lysozyme Transglycosylase protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MVEINNQRKAFLDMLAWSEGTDNGRQKTRNHGYDVIVGGELFTDYSDHPRKLVTLNPKLKSTGAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIWASLPGAGYGQFEHKADSLIAKFKEAGGTVREIDV fhuf_ecoli Ferric iron reductase protein FhuF JW4331 yjjS fhuF b4367 protein protein ecoli Escherichia coli (strain K12) MAYRSAPLYEDVIWRTHLQPQDPTLAQAVRATIAKHREHLLEFIRLDEPAPLNAMTLAQWSSPNVLSSLLAVYSDHIYRNQPMMIRENKPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQHRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEKTLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCTLK c6zcx6_9caud protein protein 9CAUD_Lambda_ev243 Escherichia phage Lambda_ev243 MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERDAEIENEKLRREVEELRQASEADLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSRIAGEIASILDGLPLSVQRRFPELENRHVDFLKRDIIKAMNKAAALDELIPGLLSEYIEQSG dcrb_ecoli Inner membrane lipoprotein DcrB dcrB b3472 yhhR JW5682 protein protein ecoli Escherichia coli (strain K12) MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVNLLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQITLPADDQQKAQTTAENIINTLVIQ fixb_ecoli Protein FixB yaaR fixB b0042 JW0041 protein protein ecoli Escherichia coli (strain K12) MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR c6zcz0_lambd Tape measure protein H Gene product H Minor tail protein H protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MAEPVGDLVVDLSLDAARFDEQMARVRRHFSGTESDAKKTAAVVEQSLSRQALAAQKAGISVGQYKAAMRMLPAQFTDVATQLAGGQSPWLILLQQGGQVKDSFGGMIPMFRGLAGAITLPMVGATSLAVATGALAYAWYQGNSTLSDFNKTLVLSGNQAGLTADRMLVLSRAGQAAGLTFNQTSESLSALVKAGVSGEAQIASISQSVARFSSASGVEVDKVAEAFGKLTTDPTSGLTAMARQFHNVSAEQIAYVAQLQRSGDEAGALQAANEAATKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIGRPDTAQEMLIKAEAAYKKADDIWNLRKDDYFVNDEARARYWDDREKARLALEAARKKAEQQTQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLEKYTARQEELNKALKDGKILQADYNTLMAAAKKDYEATLKKPKQSSVKVSAGDRQEDSAHAALLTLQAELRTLEKHAGANEKISQQRRDLWKAESQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQLAALGDKVTYQERLNALAQQADKFAQQQRAKRAAIDAKSRGLTDRQAEREATEQRLKEQYGDNPLALNNVMSEQKKTWAAEDQLRGNWMAGLKSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMTEILLKQAMVGIVGSIGSAIGGAVGGGASASGGTAIQAAAAKFHFATGGFTGTGGKYEPAGIVHRGEFVFTKEATSRIGVGNLYRLMRGYATGGYVGTPGSMADSRSQASGTFEQNNHVVINNDGTNGQIGPAALKAVYDMARKGARDEIQTQMRDGGLFSGGGR yehd_ecoli Uncharacterized fimbrial-like protein YehD yehD b2111 JW2098 protein protein ecoli Escherichia coli (strain K12) MKRSIIAAAVFSSFFMSAGVFAADVDTGTLTIKGNIAESPCKFEAGGDSVSINMPTVPTSVFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDKITGNDKAIASSNDTVGYYLYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLTDNSVQSGDVLSSLVMRVAQD mdtq_ecoli Putative multidrug resistance outer membrane protein MdtQ mdtQ yohG yohH b2138 JW5838/JW5358 b2139 protein protein ecoli Escherichia coli (strain K12) MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTALPTALKMVGQTXQWWLEYHDNQLTSLINNALQNAPDMQVAEQRIQLAEAQAKAVATQDGPQIDFSADMERQKMSAEGLMGPFALNDPAAGTTGPWYTNGTFGLTAGWHLDIWGKNRAEVTARLGTVKARAAEREQTRQLLAGSVARLYWEWQTQAALNTVLQQIEKEQNTIIATDRQLYQNGITSSVEGVETDINASKTRQQLNDVAGKMKIIEARLSALTNNQTKSLKLKPVALPKVASQLPDELGYSLLARRADLQAAHWYVESSLSTIDAAKAAFYPDINLMAFLQQDALHLSDLFRHSAQQMGVTAGLTLPIFDSGRLNANLDIAKAESNLSIASYNKAVVEAVNDVARAASQVQTLAEKNQHQAQIERDALRVVGLAQARFNAGIIAGSRVSEARIPALRERANGLLLQGQWLDASIQLTGALGGGYKR yfcq_ecoli Uncharacterized fimbrial-like protein YfcQ yfcQ JW2331 b2334 protein protein ecoli Escherichia coli (strain K12) MRKTFLTLLCVSSAIAHAADEDITFHGTLLSPPTCSISGGKTIEVEFRDLIIDDINGNYGRKEVPYELTCDSTTRHPDWEMTLTWTGTQTSFNDAAIETDVPGFGIELQHDGQRFKLNTPLAINATDFTQKPKLEAVPVKASDAVLSDTNFSAYATLRVDYQ envr_ecoli Probable acrEF/envCD operon repressor yhdK envR b3264 JW3232 protein protein ecoli Escherichia coli (strain K12) MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIIDGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELSVM rpos_ecoli RNA polymerase sigma factor RpoS Sigma-38 rpoS appR katF nur otsX sigS b2741 JW5437 Sigma S protein protein ecoli Escherichia coli (strain K12) MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE minc_ecoli Septum site-determining protein MinC minC b1176 JW1165 protein protein ecoli Escherichia coli (strain K12) MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLKHAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGKEKAPRPAPTPQAPAQNTTPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARLQLVENALTVQPLN hcr_ecoli NADH oxidoreductase HCR hcr ybjV JW5117 b0872 protein protein ecoli Escherichia coli (strain K12) MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYALVSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMGEFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVRTPQDVIFADEWRNYPVTLVAENNVTEGFIAGRLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALGVTRFFKEKFFTPVAEAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA msrc_ecoli Free methionine-R-sulfoxide reductase msrC yebR JW1821 b1832 protein protein ecoli Escherichia coli (strain K12) MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG syga_ecoli Glycine--tRNA ligase alpha subunit glyQ glyS(A) b3560 JW3531 Glycyl-tRNA synthetase alpha subunit protein protein ecoli Escherichia coli (strain K12) MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMTCLRELGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSLKELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDFLFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASREALGFPMCNKDK hldd_ecoli ADP-L-glycero-D-manno-heptose-6-epimerase hldD htrM rfaD waaD b3619 JW3594 ADP-L-glycero-beta-D-manno-heptose-6-epimerase protein protein ecoli Escherichia coli (strain K12) MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA paac_ecoli 1,2-phenylacetyl-CoA epoxidase, subunit C paaC b1390 JW1385 ydbP 1,2-phenylacetyl-CoA epoxidase, structural subunit beta 1,2-phenylacetyl-CoA monooxygenase, subunit C protein protein ecoli Escherichia coli (strain K12) MNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKGLHTEHLGPMLAEMQYLQRVLPGQQW eutc_ecoli Ethanolamine ammonia-lyase small subunit eutC Ethanolamine ammonia-lyase beta subunit Ethanolamine ammonia-lyase light chain Ethanolamine deaminase small subunit JW2433 b2440 protein protein ecoli Escherichia coli (strain K12) MDQKQIEEIVRSVMASMGQAAPAPSEAKCATTNCAAPVTSESCALDLGSAEAKAWIGVENPHRADVLTELRRSTVARVCTGRAGPRPRTQALLRFLADHSRSKDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDMGRRLCAEAVEALKAQCVANPDVQVVISDGLSTDAITVNYEEILPPLMAGLKQAGLKVGTPFFVRYGRVKIEDQIGEILGAKVVILLVGERPGLGQSESLSCYAVYSPRMATTVEADRTCISNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINMTR vint_lambd Integrase int protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK rcnb_ecoli Nickel/cobalt homeostasis protein RcnB rcnB yohN JW5346 b2107 protein protein ecoli Escherichia coli (strain K12) MTIKNKMLLGALLLVTSAAWAAPATAGSTNTSGISKYELSSFIADFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIKAYDGEIFYHR nind_lambd Protein ninD ninD protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MMRCYRCGESKEDNRFRPNQPYWNRWCLRCERTPTGVLPLPQEKEDVWRDSDEVSPT sdia_ecoli Regulatory protein SdiA sdiA b1916 JW1901 protein protein ecoli Escherichia coli (strain K12) MQDKDFFSWRRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI pyrf_ecoli Orotidine 5'-phosphate decarboxylase pyrF b1281 JW1273 OMP decarboxylase protein protein ecoli Escherichia coli (strain K12) MTLTASSSSRAVTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQRSA bame_ecoli Outer membrane protein assembly factor BamE bamE smpA b2617 JW2598 protein protein ecoli Escherichia coli (strain K12) MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN hycg_ecoli Formate hydrogenlyase subunit 7 Hydrogenase-3 component G hycG hevG b2719 JW2689 protein protein ecoli Escherichia coli (strain K12) MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR slp_ecoli Outer membrane protein Slp slp b3506 JW3474 protein protein ecoli Escherichia coli (strain K12) MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEISVLPLDSYAKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYGYGAFWPEPGWGAPYYTNAVSQVTPELVK yhdw_ecoli Putative amino-acid ABC transporter-binding protein YhdW yhdW JW3236 b3268 protein protein ecoli Escherichia coli (strain K12) MKKMMIATLAAASVLLAVANQAXAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGIDVDICRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR csra_ecoli Carbon storage regulator csrA zfiA b2696 JW2666 Translational dual regulator CsrA protein protein ecoli Escherichia coli (strain K12) MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY ydgh_ecoli Protein YdgH ydgH b1604 JW1596 protein protein ecoli Escherichia coli (strain K12) MKLKNTLLASALLSAMAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK fdoh_ecoli Formate dehydrogenase-O iron-sulfur subunit fdoH b3893 Formate dehydrogenase-O subunit beta FDH-Z subunit beta Aerobic formate dehydrogenase iron-sulfur subunit JW3864 protein protein ecoli Escherichia coli (strain K12) MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKACQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKCTLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAGVGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHYVGVGPNRADEEENNLHEEKDEERK chac_ecoli Glutathione-specific gamma-glutamylcyclotransferase chaC Cation transport regulatory protein ChaC JW1209 b1218 protein protein ecoli Escherichia coli (strain K12) MITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDEGPVWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTTGVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDPRHPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLAENFPDGVLRPGFA q38267_lambd protein protein lambd Enterobacteria phage lambda Bacteriophage lambda MHKASSVELRTSIEMAHSLAQIGIRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADERNQV j3jzz6-p33602 1440643 p33602 nuoG ECK2277 JW2278 b2283 NADH-quinone oxidoreductase, chain g 1440644 unspecified role unspecified role prey prey j3jzz6 lambdap49 N 1440645 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK, pGBKC. c6zcx5-p64435 1440643 c6zcx5 lambdap79 orf_79 1440646 unspecified role unspecified role bait bait p64435 ybcW ECK0551 JW0548 b0559 conserved hypothetical protein 1440647 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pDEST, pGBK, pGBKC. j3jzz6-p0aff6 1440643 p0aff6 nusA ECK3158 JW3138 b3169 transcription elongation protein NusA 1440648 unspecified role unspecified role prey prey j3jzz6 lambdap49 N 1440645 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pDEST, pGBK, pGBKC. a-p31062 1440643 p31062 nohD ECK0552 JW0549 b0560 bacteriophage DNA packaging protein 1440649 unspecified role unspecified role prey prey p03708 lambdap02 A 1440650 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pDEST, pGBK, pGBKC. g-p0a6g7 1440643 p0a6g7 clpP ECK0431 JW0427 b0437 ATP-dependent Clp protease, proteolytic subunit ClpP 1440651 unspecified role unspecified role prey prey p03734 lambdap14 G 1440652 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pDEST, pGBK, pGBKC. fi-p0aej8 1440643 c6zcy3 lambdap09 Fi 1440653 unspecified role unspecified role bait bait p0aej8 eutN ECK2451 JW2440 b2456 Ethanolamine catabolic microcompartment shell protein 1440654 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK, pGBKC. q-q46855 1440643 q46855 yqhC ECK3002 JW5849 b3010 putative HTH-type transcriptional regulator YqhC 1440655 unspecified role unspecified role prey prey p03047 lambdap71 Q 1440656 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK, pGBKC. p-p0a6e6 1440643 p0a6e6 atpC ECK3724 JW3709 b3731 ATP synthase F1, epsilon subunit 1440657 unspecified role unspecified role prey prey p03689 lambdap61 P 1440658 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK, pGBKC. p-p0a8n0 1440643 p0a8n0 matP ECK0947 JW0939 b0956 protein YcbG 1440659 unspecified role unspecified role prey prey p03689 lambdap61 P 1440658 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK, pGBKC. a-p31061 1440643 p03708 lambdap02 A 1440650 unspecified role unspecified role bait bait p31061 nohQ ECK1541 JW1541 b1548 bacteriophage DNA packaging protein 1440660 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK, pGBKC. g-b7iyf4 1440643 p03734 lambdap14 G 1440652 unspecified role unspecified role bait bait b7iyf4 yliL ECK0805 JW5969 b0816 b0816 hypothetical protein (yliL) {Escherichia coli W3110} 1440661 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK, pGBKC. g-p45577 1440643 p03734 lambdap14 G 1440652 unspecified role unspecified role bait bait p45577 proQ ECK1830 JW5300 b1831 ProP effector 1440662 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK, pGBKC. ea8_5-p0a734 1440643 c6zcu8 lambdap36 ea8.5 1440663 unspecified role unspecified role bait bait p0a734 minE ECK1162 JW1163 b1174 cell division topological specificity factor MinE 1440664 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea8_5-p0af59 1440643 p0af59 yjdI ECK4119 JW4087 b4126 conserved hypothetical protein 1440665 unspecified role unspecified role prey prey c6zcu8 lambdap36 ea8.5 1440663 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea8_5-p0aft8 1440643 c6zcu8 lambdap36 ea8.5 1440663 unspecified role unspecified role bait bait p0aft8 yeiW ECK2164 JW5361 b4502 proteinase inhibitor 1440666 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea10-b7iyf4 1440643 c6zcv8 lambdap45 ea10 1440667 unspecified role unspecified role bait bait b7iyf4 yliL ECK0805 JW5969 b0816 b0816 hypothetical protein (yliL) {Escherichia coli W3110} 1440661 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea10-p02359 1440643 c6zcv8 lambdap45 ea10 1440667 unspecified role unspecified role bait bait p02359 rpsG ECK3328 JW3303 b3341 ribosomal protein S7 1440668 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea10-p0a7l8 1440643 c6zcv8 lambdap45 ea10 1440667 unspecified role unspecified role bait bait p0a7l8 rpmA ECK3174 JW3152 b3185 ribosomal protein L27 1440669 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea10-p0a8n0 1440643 p0a8n0 matP ECK0947 JW0939 b0956 protein YcbG 1440659 unspecified role unspecified role prey prey c6zcv8 lambdap45 ea10 1440667 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea10-p0a9e2 1440643 c6zcv8 lambdap45 ea10 1440667 unspecified role unspecified role bait bait p0a9e2 soxS ECK4054 JW4023 b4062 regulatory protein SoxS 1440670 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea10-p0afw2 1440643 c6zcv8 lambdap45 ea10 1440667 unspecified role unspecified role bait bait p0afw2 rmf ECK0944 JW0936 b0953 b0953 ribosome modulation factor (rmf) {Escherichia coli W3110} 1440671 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea10-p23862 1440643 p23862 priC ECK0461 JW0456 b0467 primosomal replication protein N 1440672 unspecified role unspecified role prey prey c6zcv8 lambdap45 ea10 1440667 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. ea10-p75960 1440643 p75960 cobB ECK1106 JW1106 b1120 NAD-dependent deacetylase 1440673 unspecified role unspecified role prey prey c6zcv8 lambdap45 ea10 1440667 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. r-p0ae58 1440643 p0ae58 caiF ECK0035 JW0033 b0034 transcriptional activatory protein CaiF 1440674 unspecified role unspecified role prey prey c6zcx1 lambdap75 R 1440675 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. r-p39405 1440643 p39405 fhuF ECK4357 JW4331 b4367 ferric iron reductase protein FhuF 1440676 unspecified role unspecified role prey prey c6zcx1 lambdap75 R 1440675 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nu1-p0aee1 1440643 c6zcx6 lambdap01 nu1 1440677 unspecified role unspecified role bait bait p0aee1 dcrB ECK3456 JW5682 b3472 protein DcrB 1440678 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. fi-p31574 1440643 c6zcy3 lambdap09 Fi 1440653 unspecified role unspecified role bait bait p31574 fixB ECK0043 JW0041 b0042 protein FixB 1440679 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. h-b7iyf4 1440643 c6zcz0 lambdap16 H 1440680 unspecified role unspecified role bait bait b7iyf4 yliL ECK0805 JW5969 b0816 b0816 hypothetical protein (yliL) {Escherichia coli W3110} 1440661 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. h-p0aft8 1440643 p0aft8 yeiW ECK2164 JW5361 b4502 proteinase inhibitor 1440666 unspecified role unspecified role prey prey c6zcz0 lambdap16 H 1440680 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. h-p33343 1440643 p33343 yehD ECK2104 JW2098 b2111 fimbrial protein 1440681 unspecified role unspecified role prey prey c6zcz0 lambdap16 H 1440680 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. h-p33369 1440643 c6zcz0 lambdap16 H 1440680 unspecified role unspecified role bait bait p33369 mdtQ ECK2132 JW5358 b2139 YohH 1440682 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. h-p76500 1440643 p76500 yfcQ ECK2328 JW2331 b2334 conserved hypothetical protein 1440683 unspecified role unspecified role prey prey c6zcz0 lambdap16 H 1440680 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. j3jzz6-p0a8n0 1440643 j3jzz6 lambdap49 N 1440645 unspecified role unspecified role bait bait p0a8n0 matP ECK0947 JW0939 b0956 protein YcbG 1440659 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. j3jzz6-p0act2 1440643 p0act2 envR ECK3251 JW3232 b3264 probable acrEF/envCD operon repressor 1440684 unspecified role unspecified role prey prey j3jzz6 lambdap49 N 1440645 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. j3jzz6-p13445 1440643 j3jzz6 lambdap49 N 1440645 unspecified role unspecified role bait bait p13445 rpoS ECK2736 JW5437 b2741 RNA polymerase sigma factor RpoS 1440685 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. j3jzz6-p18196 1440643 p18196 minC ECK1164 JW1165 b1176 septum site-determining protein MinC 1440686 unspecified role unspecified role prey prey j3jzz6 lambdap49 N 1440645 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. j3jzz6-p75824 1440643 j3jzz6 lambdap49 N 1440645 unspecified role unspecified role bait bait p75824 hcr ECK0863 JW5117 b0872 NADH oxidoreductase hcr 1440687 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. j3jzz6-p76270 1440643 j3jzz6 lambdap49 N 1440645 unspecified role unspecified role bait bait p76270 msrC ECK1831 JW1821 b1832 protein YebR 1440688 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. q-p00960 1440643 p00960 glyQ ECK3548 JW3531 b3560 glycyl-tRNA synthetase, alpha subunit 1440689 unspecified role unspecified role prey prey p03047 lambdap71 Q 1440656 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. q-p67910 1440643 p03047 lambdap71 Q 1440656 unspecified role unspecified role bait bait p67910 hldD ECK3609 JW3594 b3619 ADP-L-glycero-D-manno-heptose-6-epimerase 1440690 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. q-p76079 1440643 p76079 paaC ECK1387 JW1385 b1390 phenylacetate-CoA oxygenase, PaaI subunit 1440691 unspecified role unspecified role prey prey p03047 lambdap71 Q 1440656 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. p-p19636 1440643 p03689 lambdap61 P 1440658 unspecified role unspecified role bait bait p19636 eutC ECK2435 JW2433 b2440 ethanolamine ammonia-lyase, light chain 1440692 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. int-p31062 1440643 p31062 nohD ECK0552 JW0549 b0560 bacteriophage DNA packaging protein 1440649 unspecified role unspecified role prey prey p03700 lambdap33 int 1440693 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. g-p64534 1440643 p64534 rcnB ECK2100 JW5346 b2107 conserved hypothetical protein 1440694 unspecified role unspecified role prey prey p03734 lambdap14 G 1440652 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p07026 1440643 p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait p07026 sdiA ECK1915 JW1901 b1916 regulatory protein SdiA 1440696 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p08244 1440643 p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait p08244 pyrF ECK1276 JW1273 b1281 orotidine 5'-phosphate decarboxylase 1440697 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p0a734 1440643 p0a734 minE ECK1162 JW1163 b1174 cell division topological specificity factor MinE 1440664 unspecified role unspecified role prey prey p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p0a937 1440643 p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait p0a937 bamE ECK2613 JW2598 b2617 small protein A 1440698 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p0a9e2 1440643 p0a9e2 soxS ECK4054 JW4023 b4062 regulatory protein SoxS 1440670 unspecified role unspecified role prey prey p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p0af59 1440643 p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait p0af59 yjdI ECK4119 JW4087 b4126 conserved hypothetical protein 1440665 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p16433 1440643 p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait p16433 HycG ECK2714 JW2689 b2719 hydrogenase-4 component I 1440699 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p37194 1440643 p37194 slp ECK3490 JW3474 b3506 outer membrane protein slp 1440700 unspecified role unspecified role prey prey p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p45766 1440643 p45766 yhdW ECK3255 JW3236 b3268 general L-amino acid-binding periplasmic protein AapJ 1440701 unspecified role unspecified role prey prey p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p69913 1440643 p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait p69913 csrA ECK2691 JW2666 b2696 carbon storage regulator 1440702 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. nind-p76270 1440643 p76270 msrC ECK1831 JW1821 b1832 protein YebR 1440688 unspecified role unspecified role prey prey p03767 lambdap65 NinD 1440695 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBK. fi-p0a734 1440643 c6zcy3 lambdap09 Fi 1440653 unspecified role unspecified role bait bait p0a734 minE ECK1162 JW1163 b1174 cell division topological specificity factor MinE 1440664 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBKC. fi-p76177 1440643 p76177 ydgH ECK1599 JW1596 b1604 protein YdgH 1440703 unspecified role unspecified role prey prey c6zcy3 lambdap09 Fi 1440653 unspecified role unspecified role bait bait physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBKC. p-q46855 1440643 p03689 lambdap61 P 1440658 unspecified role unspecified role bait bait q46855 yqhC ECK3002 JW5849 b3010 putative HTH-type transcriptional regulator YqhC 1440655 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBKC. g-p0aaj5 1440643 p03734 lambdap14 G 1440652 unspecified role unspecified role bait bait p0aaj5 fdoH ECK3886 JW3864 b3893 formate dehydrogenase, beta subunit 1440704 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBKC. g-p39163 1440643 p03734 lambdap14 G 1440652 unspecified role unspecified role bait bait p39163 chaC ECK1212 JW1209 b1218 cation transport protein ChaC 1440705 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBKC. g-p39405 1440643 p03734 lambdap14 G 1440652 unspecified role unspecified role bait bait p39405 fhuF ECK4357 JW4331 b4367 ferric iron reductase protein FhuF 1440676 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBKC. q38267-q46855 1440643 q38267 lambdap38 orf63 1440706 unspecified role unspecified role bait bait q46855 yqhC ECK3002 JW5849 b3010 putative HTH-type transcriptional regulator YqhC 1440655 unspecified role unspecified role prey prey physical association physical association false false false Table 4, suppl. table S1 Interaction found using the following vector systems: pGBKC.