#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:A0A1B2JER8 uniprotkb:C4QZQ7 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800027|ensemblfungi:CAY68731 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4qzq7_kompg(display_long)|uniprotkb:PAS_chr2-1_0125(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6J50|rcsb pdb:6J51|rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|ensemblfungi:CAY68731(transcript)|ensemblfungi:PAS_chr2-1_0125(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005721"(pericentric heterochromatin)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0032549"(ribonucleoside binding)|go:"GO:0046872"(metal ion binding)|rcsb pdb:6INQ|refseq:XP_002491011.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR037033|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR037034|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR007646(RNA polymerase Rpb2, domain 4)|interpro:IPR007647(RNA polymerase Rpb2, domain 5)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:gcT/MsMEB3P8v3j3Pppq08HpzZU644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:C4R009 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800218|ensemblfungi:CAY68833 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4r009_kompg(display_long)|uniprotkb:PAS_chr2-1_0223(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6IR9|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY68833(transcript)|ensemblfungi:PAS_chr2-1_0223(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|rcsb pdb:6INQ|refseq:XP_002491113.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR023580|interpro:IPR020789|interpro:IPR000268(RNA polymerases, N/8 Kd subunits)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:1ay4K0OWVYfU09LaWaEKYqDEXuk644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:C4R1V1 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800134|ensemblfungi:CAY69475 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4r1v1_kompg(display_long)|uniprotkb:PAS_chr2-2_0434(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY69475(transcript)|ensemblfungi:PAS_chr2-2_0434(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|rcsb pdb:6INQ|refseq:XP_002491755.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR020708|interpro:IPR006110(RNA polymerase Rpb6)|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR028363|interpro:IPR036161|interpro:IPR006111(DNA-directed RNA polymerase, 14 to 18 kDa subunit)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:sOgXLbXs4iRGdaUFfb88ZVm1W98644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:C4R273 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800178|ensemblfungi:CAY69597 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4r273_kompg(display_long)|uniprotkb:PAS_chr2-2_0309(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY69597(transcript)|ensemblfungi:PAS_chr2-2_0309(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|rcsb pdb:6INQ|refseq:XP_002491877.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR005570(RNA polymerase, Rpb8)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:MnvasHhqga4MIKsh8kH1/bpM0wc644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:C4R2U9 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800081|ensemblfungi:CAY69823 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4r2u9_kompg(display_long)|uniprotkb:PAS_chr2-2_0104(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|rcsb pdb:6IR9|rcsb pdb:6J4W|ensemblfungi:CAY69823(transcript)|ensemblfungi:PAS_chr2-2_0104(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0000288"(nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay)|go:"GO:0000932"(P-body)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0003727"(single-stranded RNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0006367"(transcription initiation from RNA polymerase II promoter)|go:"GO:0031369"(translation initiation factor binding)|go:"GO:0031990"(mRNA export from nucleus in response to heat stress)|go:"GO:0034402"(recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex)|go:"GO:0045948"(positive regulation of translational initiation)|rcsb pdb:6INQ|refseq:XP_002492103.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR010997(HRDC-like)|interpro:IPR006590(RNA polymerase II, Rpb4, core)|interpro:IPR005574(RNA polymerase II, Rpb4)|interpro:IPR038324|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:/017Xpkf83C3N7U8UYAXzDWDlv8644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:C4R3P8 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800108|ensemblfungi:CAY70112 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4r3p8_kompg(display_long)|uniprotkb:PAS_chr3_0157(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6J50|rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J51|ensemblfungi:CAY70112(transcript)|ensemblfungi:PAS_chr3_0157(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0006360"(transcription by RNA polymerase I)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0006383"(transcription by RNA polymerase III)|rcsb pdb:6INQ|refseq:XP_002492363.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR014381(DNA-directed RNA polymerase, RPB5 subunit)|interpro:IPR005571(RNA polymerase, Rpb5, N-terminal)|interpro:IPR036710|interpro:IPR000783(RNA polymerase, subunit H/Rpb5 C-terminal)|interpro:IPR020608|interpro:IPR035913|interpro:IPR020609|interpro:IPR039531|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:uvHyo3JNliA/f1LdlRdTrLHAhu8644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:C4R3Z5 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800241|ensemblfungi:CAY70274 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4r3z5_kompg(display_long)|uniprotkb:PAS_chr3_0244(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY70274(transcript)|ensemblfungi:PAS_chr3_0244(gene)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0046983"(protein dimerization activity)|rcsb pdb:6INQ|refseq:XP_002492460.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR037685|interpro:IPR036603|interpro:IPR009025(DNA-directed RNA polymerase, RBP11-like)|interpro:IPR008193(DNA-directed RNA polymerase Rpb11, 13-16 kDa subunit, conserved site)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:Bcxi1i7CjZerdkNw1zlStjnDbGA644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:C4R4Y0 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20799999|ensemblfungi:CAY70616 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4r4y0_kompg(display_long)|uniprotkb:PAS_chr3_0568(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 interpro:IPR042102|rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY70616(transcript)|ensemblfungi:PAS_chr3_0568(gene)|go:"GO:0000785"(chromatin)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0046872"(metal ion binding)|rcsb pdb:6INQ|refseq:XP_002492795.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR000684(RNA polymerase II, heptapeptide repeat, eukaryotic)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007075(RNA polymerase Rpb1, domain 6)|interpro:IPR007073(RNA polymerase Rpb1, domain 7)|interpro:IPR038593|interpro:IPR038120|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:/Iegq8f+rYdUcNLjKKqdngz4RxI644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:C4R7L2 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800059|ensemblfungi:CAY71587 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4r7l2_kompg(display_long)|uniprotkb:PAS_chr4_0344(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY71587(transcript)|ensemblfungi:PAS_chr4_0344(gene)|go:"GO:0000785"(chromatin)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0046983"(protein dimerization activity)|rcsb pdb:6INQ|refseq:XP_002493766.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR001514(DNA-directed RNA polymerase, 30-40 kDa subunit, conserved site)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR036603|interpro:IPR036643|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:aRUBPn6vT0brJH8ce/7n4CfRPV8644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:C4R9A1 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800159|ensemblfungi:CAY72176 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:c4r9a1_kompg(display_long)|uniprotkb:PAS_chr4_0906(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY72176(transcript)|ensemblfungi:PAS_chr4_0906(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0010590"(regulation of septum digestion after cytokinesis)|go:"GO:0097394"(telomeric repeat-containing RNA transcription by RNA polymerase II)|rcsb pdb:6INQ|refseq:XP_002494355.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR036898|interpro:IPR005576(RNA polymerase Rpb7, N-terminal)|interpro:IPR003029(S1, RNA binding)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:uE/3Z3mElfHD6zyWFofgkpflFOg644223 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:F2QMI1 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800261|ensemblfungi:CCA36628 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:f2qmi1_kompc(display_long)|uniprotkb:RPC10(gene name)|psi-mi:RPC10(display_short)|uniprotkb:PP7435_Chr1-0476(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:981350(kompc)|taxid:981350("Komagataella phaffii (strain ATCC 76273 / CBS 7435 / CECT 11047 / NRRL Y-11430 / Wegner 21-1)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CCA36628(transcript)|ensemblfungi:PP7435_CHR1-0476(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|rcsb pdb:6INQ|rcsb pdb:5XOG|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR029040|interpro:IPR039747|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:XNaJRCB6Mz0dez4DoFiRGfxeoZA981350 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:F2QPE6 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-20800198|ensemblfungi:CCA37274 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:f2qpe6_kompc(display_long)|uniprotkb:RPB9(gene name)|psi-mi:RPB9(display_short)|uniprotkb:PP7435_Chr1-1144(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:981350(kompc)|taxid:981350("Komagataella phaffii (strain ATCC 76273 / CBS 7435 / CECT 11047 / NRRL Y-11430 / Wegner 21-1)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CCA37274(transcript)|ensemblfungi:PP7435_CHR1-1144(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005730"(nucleolus)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0006379"(mRNA cleavage)|go:"GO:0008270"(zinc ion binding)|rcsb pdb:6INQ|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|interpro:IPR019761|interpro:IPR001529(DNA-directed RNA polymerase, M/15 kDa subunit)|interpro:IPR012164(DNA-directed RNA polymerase, subunit C11/M/9)|interpro:IPR034012|interpro:IPR001222(Zinc finger, TFIIS-type)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:K8GCq9GcWsMRVlapEcuaLTOLJfc981350 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A0A1B2JER8 uniprotkb:F2QUC3 intact:EBI-26494290|ensemblfungi:ANZ76288 intact:EBI-26494300|ensemblfungi:CCA39001 psi-mi:a0a1b2jer8_picpa(display_long)|uniprotkb:ELF1(gene name)|psi-mi:ELF1(display_short)|uniprotkb:ATY40_BA7504229(orf name) psi-mi:f2quc3_kompc(display_long)|uniprotkb:SPT5(gene name)|psi-mi:SPT5(display_short)|uniprotkb:Chromatin elongation factor spt5(gene name synonym)|uniprotkb:transcription Elongation factor SPT5(gene name synonym)|uniprotkb:PP7435_Chr3-0027(locus name) psi-mi:"MI:0114"(x-ray crystallography) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:4922(picpa)|taxid:4922("Pichia pastoris (Yeast)") taxid:981350(kompc)|taxid:981350("Komagataella phaffii (strain ATCC 76273 / CBS 7435 / CECT 11047 / NRRL Y-11430 / Wegner 21-1)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494288|wwpdb:5XOG|imex:IM-28546-1 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:ANZ76288(transcript)|ensemblfungi:ATY40_BA7504229(gene)|go:"GO:0005634"(nucleus)|go:"GO:0046872"(metal ion binding)|rcsb pdb:5XOG|interpro:IPR007808(Protein of unknown function DUF701, zinc-binding putative)|interpro:IPR038567 ensemblfungi:CCA39001(transcript)|ensemblfungi:PP7435_CHR3-0027(gene)|go:"GO:0005634"(nucleus)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0006397"(mRNA processing)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|rcsb pdb:5XOG|interpro:IPR005824(KOW)|interpro:IPR041973|interpro:IPR041975|interpro:IPR041976|interpro:IPR041977|interpro:IPR041978|interpro:IPR005100(Supt5 repeat)|interpro:IPR036735|interpro:IPR039385|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR039659|interpro:IPR022581|interpro:IPR017071(Transcription elongation factor Spt5)|interpro:IPR008991(Translation protein SH3-like) - - - figure legend:Fig 1, Fig S3, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:XxvFkObXKaBByhANCU8hXXYhRRI4922 rogid:fiReSF3elv/T+GigQdEyO6vkdHQ981350 rigid:bR/n6nErMNVboeMckctb+5gqNUg false mutation:53-53,54-54,55-55|sufficient binding region:4-85 sufficient binding region:736-815 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4QY79 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-26494400|ensemblfungi:CAY68202 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4qy79_kompg(display_long)|uniprotkb:PAS_chr1-4_0359(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005730"(nucleolus)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0006379"(mRNA cleavage)|go:"GO:0008270"(zinc ion binding)|ensemblfungi:CAY68202(transcript)|ensemblfungi:PAS_chr1-4_0359(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|refseq:XP_002490483.1|rcsb pdb:5XON|interpro:IPR001529(DNA-directed RNA polymerase, M/15 kDa subunit)|interpro:IPR012164(DNA-directed RNA polymerase, subunit C11/M/9)|interpro:IPR034012|interpro:IPR001222(Zinc finger, TFIIS-type) - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:cp+aciY4RjdZWt6szw3VWvsiF+s644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 sufficient binding region:9-113 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4QZQ7 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20800027|ensemblfungi:CAY68731 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4qzq7_kompg(display_long)|uniprotkb:PAS_chr2-1_0125(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6J50|rcsb pdb:6J51|rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|ensemblfungi:CAY68731(transcript)|ensemblfungi:PAS_chr2-1_0125(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005721"(pericentric heterochromatin)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0032549"(ribonucleoside binding)|go:"GO:0046872"(metal ion binding)|rcsb pdb:6INQ|refseq:XP_002491011.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR037033|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR037034|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR007646(RNA polymerase Rpb2, domain 4)|interpro:IPR007647(RNA polymerase Rpb2, domain 5)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:gcT/MsMEB3P8v3j3Pppq08HpzZU644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R009 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20800218|ensemblfungi:CAY68833 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r009_kompg(display_long)|uniprotkb:PAS_chr2-1_0223(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6IR9|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY68833(transcript)|ensemblfungi:PAS_chr2-1_0223(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|rcsb pdb:6INQ|refseq:XP_002491113.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR023580|interpro:IPR020789|interpro:IPR000268(RNA polymerases, N/8 Kd subunits)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:1ay4K0OWVYfU09LaWaEKYqDEXuk644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R0E6 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-21272943|ensemblfungi:CAY68970 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r0e6_kompg(display_long)|uniprotkb:PAS_chr2-1_0350(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:PAS_chr2-1_0350(gene)|go:"GO:0000182"(rDNA binding)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0000776"(kinetochore)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003727"(single-stranded RNA binding)|go:"GO:0006342"|go:"GO:0006370"(7-methylguanosine mRNA capping)|go:"GO:0007059"(chromosome segregation)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008298"(intracellular mRNA localization)|go:"GO:0010507"(negative regulation of autophagy)|go:"GO:0031934"(mating-type region heterochromatin)|go:"GO:0032044"(DSIF complex)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0033553"(rDNA heterochromatin)|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0090262"(regulation of transcription-coupled nucleotide-excision repair)|go:"GO:2000232"(regulation of rRNA processing)|go:"GO:2001208"(negative regulation of transcription elongation by RNA polymerase I)|go:"GO:2001209"(positive regulation of transcription elongation from RNA polymerase I promoter)|ensemblfungi:CAY68970(transcript)|refseq:XP_002491250.1|rcsb pdb:5XON|interpro:IPR029040|interpro:IPR009287(Transcription initiation Spt4)|interpro:IPR022800|interpro:IPR038510 - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:ywCrJ9W9Xggw4QlYjFSer87BELk644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 sufficient binding region:8-114 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R1V1 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20800134|ensemblfungi:CAY69475 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r1v1_kompg(display_long)|uniprotkb:PAS_chr2-2_0434(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY69475(transcript)|ensemblfungi:PAS_chr2-2_0434(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|rcsb pdb:6INQ|refseq:XP_002491755.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR020708|interpro:IPR006110(RNA polymerase Rpb6)|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR028363|interpro:IPR036161|interpro:IPR006111(DNA-directed RNA polymerase, 14 to 18 kDa subunit)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:sOgXLbXs4iRGdaUFfb88ZVm1W98644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R273 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20800178|ensemblfungi:CAY69597 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r273_kompg(display_long)|uniprotkb:PAS_chr2-2_0309(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY69597(transcript)|ensemblfungi:PAS_chr2-2_0309(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|rcsb pdb:6INQ|refseq:XP_002491877.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR005570(RNA polymerase, Rpb8)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:MnvasHhqga4MIKsh8kH1/bpM0wc644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R2R6 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-26494439|ensemblfungi:CAY69790 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r2r6_kompg(display_long)|uniprotkb:PAS_chr2-2_0135(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 ensemblfungi:CAY69790(transcript)|ensemblfungi:PAS_chr2-2_0135(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|refseq:XP_002492070.1|rcsb pdb:5XON|interpro:IPR035100|interpro:IPR003617(Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type)|interpro:IPR035441|interpro:IPR003618(Transcription elongation factor S-II, central region)|interpro:IPR036575|interpro:IPR017923|interpro:IPR006289(Transcription elongation factor, TFIIS)|interpro:IPR001222(Zinc finger, TFIIS-type) - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:4SQEFOHxdZfcF7SRJd4/DQkS0ZE644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 sufficient binding region:99-285 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R2U9 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20800081|ensemblfungi:CAY69823 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r2u9_kompg(display_long)|uniprotkb:PAS_chr2-2_0104(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|rcsb pdb:6IR9|rcsb pdb:6J4W|ensemblfungi:CAY69823(transcript)|ensemblfungi:PAS_chr2-2_0104(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0000288"(nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay)|go:"GO:0000932"(P-body)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0003727"(single-stranded RNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0006367"(transcription initiation from RNA polymerase II promoter)|go:"GO:0031369"(translation initiation factor binding)|go:"GO:0031990"(mRNA export from nucleus in response to heat stress)|go:"GO:0034402"(recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex)|go:"GO:0045948"(positive regulation of translational initiation)|rcsb pdb:6INQ|refseq:XP_002492103.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR010997(HRDC-like)|interpro:IPR006590(RNA polymerase II, Rpb4, core)|interpro:IPR005574(RNA polymerase II, Rpb4)|interpro:IPR038324|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:/017Xpkf83C3N7U8UYAXzDWDlv8644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R370 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-21272973|ensemblfungi:CAY71204 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r370_kompg(display_long)|uniprotkb:Chromatin elongation factor spt5(gene name synonym)|uniprotkb:transcription Elongation factor SPT5(gene name synonym)|uniprotkb:PAS_chr3_1136(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 interpro:IPR041973|interpro:IPR041975|interpro:IPR041976|interpro:IPR041977|interpro:IPR041978|rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY71204(transcript)|ensemblfungi:PAS_chr3_1136(gene)|go:"GO:0005634"(nucleus)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0006397"(mRNA processing)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|refseq:XP_002493383.1|rcsb pdb:5XON|interpro:IPR005824(KOW)|interpro:IPR005100(Supt5 repeat)|interpro:IPR036735|interpro:IPR039385|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR039659|interpro:IPR022581|interpro:IPR017071(Transcription elongation factor Spt5)|interpro:IPR008991(Translation protein SH3-like) - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:fiReSF3elv/T+GigQdEyO6vkdHQ644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 sufficient binding region:206-815 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R3P8 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20800108|ensemblfungi:CAY70112 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r3p8_kompg(display_long)|uniprotkb:PAS_chr3_0157(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6J50|rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J51|ensemblfungi:CAY70112(transcript)|ensemblfungi:PAS_chr3_0157(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0006360"(transcription by RNA polymerase I)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0006383"(transcription by RNA polymerase III)|rcsb pdb:6INQ|refseq:XP_002492363.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR014381(DNA-directed RNA polymerase, RPB5 subunit)|interpro:IPR005571(RNA polymerase, Rpb5, N-terminal)|interpro:IPR036710|interpro:IPR000783(RNA polymerase, subunit H/Rpb5 C-terminal)|interpro:IPR020608|interpro:IPR035913|interpro:IPR020609|interpro:IPR039531|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:uvHyo3JNliA/f1LdlRdTrLHAhu8644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R3Z5 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20800241|ensemblfungi:CAY70274 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r3z5_kompg(display_long)|uniprotkb:PAS_chr3_0244(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY70274(transcript)|ensemblfungi:PAS_chr3_0244(gene)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0046983"(protein dimerization activity)|rcsb pdb:6INQ|refseq:XP_002492460.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR037685|interpro:IPR036603|interpro:IPR009025(DNA-directed RNA polymerase, RBP11-like)|interpro:IPR008193(DNA-directed RNA polymerase Rpb11, 13-16 kDa subunit, conserved site)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:Bcxi1i7CjZerdkNw1zlStjnDbGA644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R4Y0 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20799999|ensemblfungi:CAY70616 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r4y0_kompg(display_long)|uniprotkb:PAS_chr3_0568(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 interpro:IPR042102|rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY70616(transcript)|ensemblfungi:PAS_chr3_0568(gene)|go:"GO:0000785"(chromatin)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0046872"(metal ion binding)|rcsb pdb:6INQ|refseq:XP_002492795.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR000684(RNA polymerase II, heptapeptide repeat, eukaryotic)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007075(RNA polymerase Rpb1, domain 6)|interpro:IPR007073(RNA polymerase Rpb1, domain 7)|interpro:IPR038593|interpro:IPR038120|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:/Iegq8f+rYdUcNLjKKqdngz4RxI644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R7L2 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20800059|ensemblfungi:CAY71587 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r7l2_kompg(display_long)|uniprotkb:PAS_chr4_0344(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY71587(transcript)|ensemblfungi:PAS_chr4_0344(gene)|go:"GO:0000785"(chromatin)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046872"(metal ion binding)|go:"GO:0046983"(protein dimerization activity)|rcsb pdb:6INQ|refseq:XP_002493766.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR001514(DNA-directed RNA polymerase, 30-40 kDa subunit, conserved site)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR036603|interpro:IPR036643|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:aRUBPn6vT0brJH8ce/7n4CfRPV8644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:C4QWA8 uniprotkb:C4R9A1 intact:EBI-26494417|ensemblfungi:CAY67531 intact:EBI-20800159|ensemblfungi:CAY72176 psi-mi:c4qwa8_kompg(display_long)|uniprotkb:PAS_chr1-1_0166(locus name) psi-mi:c4r9a1_kompg(display_long)|uniprotkb:PAS_chr4_0906(locus name) psi-mi:"MI:0410"(3D electron microscopy) Ehara et al. (2017) pubmed:28775211|imex:IM-28546 taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") taxid:644223(picpg)|taxid:644223("Komagataella pastoris (strain GS115 / ATCC 20864)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-26494398|wwpdb:5XON|emdb:EMD-6747|imex:IM-28546-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblfungi:CAY67531(transcript)|ensemblfungi:PAS_chr1-1_0166(gene)|go:"GO:0001054"(RNA polymerase I activity)|go:"GO:0001055"(RNA polymerase II activity)|go:"GO:0001056"(RNA polymerase III activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003968"(RNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005736"(RNA polymerase I complex)|go:"GO:0008270"(zinc ion binding)|go:"GO:0042797"(tRNA transcription by RNA polymerase III)|refseq:XP_002489812.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XON|interpro:IPR006591(RNA polymerase Rbp10)|interpro:IPR039747|interpro:IPR029040 rcsb pdb:6IR9|rcsb pdb:6J4W|rcsb pdb:6J4X|rcsb pdb:6J4Y|rcsb pdb:6J4Z|rcsb pdb:6J50|rcsb pdb:6J51|ensemblfungi:CAY72176(transcript)|ensemblfungi:PAS_chr4_0906(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0010590"(regulation of septum digestion after cytokinesis)|go:"GO:0097394"(telomeric repeat-containing RNA transcription by RNA polymerase II)|rcsb pdb:6INQ|refseq:XP_002494355.1|rcsb pdb:5X4Z|rcsb pdb:5X50|rcsb pdb:5X51|rcsb pdb:5XOG|rcsb pdb:5XON|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR036898|interpro:IPR005576(RNA polymerase Rpb7, N-terminal)|interpro:IPR003029(S1, RNA binding)|rcsb pdb:6A5L|rcsb pdb:6A5O|rcsb pdb:6A5P|rcsb pdb:6A5R|rcsb pdb:6A5T|rcsb pdb:6A5U - - - figure legend:Fig 2, Fig S6, S10, Table S2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2020/11/30 2020/11/30 rogid:SCUxe+mxQp8tr4hY+WdUgxVSVF0644223 rogid:uE/3Z3mElfHD6zyWFofgkpflFOg644223 rigid:jmhbbGx1Q+VHhsJ20ieHUZVaTYs false sufficient binding region:1-69 - 1 1 psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant)