#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:P34223	uniprotkb:P25694	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-4308|ensemblfungi:YDL126C|uniprotkb:D6VRM4	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:cdc48_yeast(display_long)|uniprotkb:CDC48(gene name)|psi-mi:CDC48(display_short)|uniprotkb:Cell division cycle protein 48(gene name synonym)|uniprotkb:Transitional endoplasmic reticulum ATPase homolog(gene name synonym)|uniprotkb:YDL126C(locus name)	psi-mi:"MI:0410"(3D electron microscopy)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0407"(direct interaction)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915148|wwpdb:6OPC|emdb:EMD-20214|emdb:EMD-20138|imex:IM-28194-1	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	refseq:NP_010157.1|sgd:S000002284|ensemblfungi:YDL126C(gene)|ensemblfungi:YDL126C_mRNA(transcript)|go:"GO:0000837"(Doa10p ubiquitin ligase complex)|dip:DIP-2704N|mint:P25694|go:"GO:0000839"(Hrd1p ubiquitin ligase ERAD-L complex)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005739"(mitochondrion)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005829"(cytosol)|go:"GO:0006274"(DNA replication termination)|go:"GO:0010636"(positive regulation of mitochondrial fusion)|go:"GO:0016236"(macroautophagy)|go:"GO:0016320"(endoplasmic reticulum membrane fusion)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030894"(replisome)|go:"GO:0030970"(retrograde protein transport, ER to cytosol)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031593"(polyubiquitin modification-dependent protein binding)|go:"GO:0034098"(VCP-NPL4-UFD1 AAA ATPase complex)|go:"GO:0034517"(ribophagy)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0036266"(Cdc48p-Npl4p-Vms1p AAA ATPase complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043328"(protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway)|go:"GO:0043332"(mating projection tip)|go:"GO:0043624"|go:"GO:0046034"(ATP metabolic process)|go:"GO:0051228"(mitotic spindle disassembly)|go:"GO:0051974"(negative regulation of telomerase activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071629"(cytoplasm protein quality control by the ubiquitin-proteasome system)|go:"GO:0071630"(nuclear protein quality control by the ubiquitin-proteasome system)|go:"GO:0071712"(ER-associated misfolded protein catabolic process)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:0097352"(autophagosome maturation)|go:"GO:0120174"(stress-induced homeostatically regulated protein degradation pathway)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|go:"GO:1990171"(SCF complex disassembly in response to cadmium stress)|go:"GO:2001168"(positive regulation of histone H2B ubiquitination)|interpro:IPR003338(AAA ATPase VAT, N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR004201(Cell division protein 48, CDC48, domain 2)|interpro:IPR005938(AAA ATPase, CDC48)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR015415(Vps4 oligomerisation, C-terminal)|interpro:IPR027417|interpro:IPR029067|interpro:IPR041569|rcsb pdb:6OA9|rcsb pdb:6OAA|rcsb pdb:6OAB|rcsb pdb:6OMB|rcsb pdb:6OPC|reactome:R-SCE-110320|reactome:R-SCE-3371511|reactome:R-SCE-532668|reactome:R-SCE-5358346|reactome:R-SCE-5689896|reactome:R-SCE-6798695|reactome:R-SCE-8876725	-	crc64:AB46C88D7ED4F11C	crc64:02ADDB9A227614D8	figure legend:Fig 1, Table S1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:qM/04kWcyjkQ3QCa3WklyvhNigE559292	rigid:lmnXeWUc5UuRTxO/TClb7Z+LJ0g	false	flag tag:c-c	-	1	6	psi-mi:"MI:0396"(predetermined participant)|psi-mi:"MI:2287"(identification by structure determination)	psi-mi:"MI:2287"(identification by structure determination)
uniprotkb:P34223	uniprotkb:P12695	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-12469|ensemblfungi:YNL071W|uniprotkb:D6W1A8	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:odp2_yeast(display_long)|uniprotkb:LAT1(gene name)|psi-mi:LAT1(display_short)|uniprotkb:ODP2(gene name synonym)|uniprotkb:YNL071W(locus name)|uniprotkb:N2374(orf name)|uniprotkb:Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex(gene name synonym)|uniprotkb:Pyruvate dehydrogenase complex component E2(gene name synonym)|uniprotkb:PDA2(gene name synonym)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	ensemblfungi:YNL071W(gene)|ensemblfungi:YNL071W_mRNA(transcript)|go:"GO:0004742"(dihydrolipoyllysine-residue acetyltransferase activity)|go:"GO:0005739"(mitochondrion)|go:"GO:0005967"(mitochondrial pyruvate dehydrogenase complex)|go:"GO:0006086"(acetyl-CoA biosynthetic process from pyruvate)|interpro:IPR000089(Biotin/lipoyl attachment)|interpro:IPR001078(Catalytic domain of components of various dehydrogenase complexes)|interpro:IPR003016(2-oxo acid dehydrogenase, lipoyl-binding site)|interpro:IPR004167(E3 binding)|interpro:IPR006257(Dihydrolipoamide acetyltransferase, long form)|interpro:IPR011053(Single hybrid motif)|interpro:IPR023213|interpro:IPR036625|reactome:R-SCE-389661|reactome:R-SCE-70268|refseq:NP_014328.3|sgd:S000005015|mint:P12695|dip:DIP-6782N	-	crc64:AB46C88D7ED4F11C	crc64:49D64C738926E784	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:+1Uhr/HuwJcUlpFSLPageTN92iI559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:Q12018	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-4321|ensemblfungi:YDL132W|uniprotkb:D6VRL7	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:cdc53_yeast(display_long)|uniprotkb:CDC53(gene name)|psi-mi:CDC53(display_short)|uniprotkb:YDL132W(locus name)|uniprotkb:D2190(orf name)|uniprotkb:Cullin-A(gene name synonym)|uniprotkb:E3 ubiquitin ligase complex SCF subunit CDC53(gene name synonym)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	dip:DIP-1234N|ensemblfungi:YDL132W(gene)|ensemblfungi:YDL132W_mRNA(transcript)|go:"GO:0000082"(G1/S transition of mitotic cell cycle)|go:"GO:0000086"(G2/M transition of mitotic cell cycle)|go:"GO:0003688"(DNA replication origin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0019005"(SCF ubiquitin ligase complex)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0031146"(SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)|go:"GO:0031461"(cullin-RING ubiquitin ligase complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0051301"(cell division)|interpro:IPR001373(Cullin, N-terminal region)|interpro:IPR016157(Cullin, conserved site)|interpro:IPR016158(Cullin homology)|interpro:IPR016159(Cullin repeat-like)|interpro:IPR019559|interpro:IPR036317|interpro:IPR036388|interpro:IPR036390|rcsb pdb:3O2P|rcsb pdb:3O6B|reactome:R-SCE-174113|refseq:NP_010150.1|sgd:S000002290|mint:Q12018|reactome:R-SCE-68949|reactome:R-SCE-8854050|reactome:R-SCE-8951664|reactome:R-SCE-983168	-	crc64:AB46C88D7ED4F11C	crc64:22BC8B35034EDDEF	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:ycwncb4mcXUbeLZlAdn3jN34zsI559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P54730	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-28127|uniprotkb:D6VZP1|ensemblfungi:YMR067C	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:ubx4_yeast(display_long)|uniprotkb:UBX4(gene name)|psi-mi:UBX4(display_short)|uniprotkb:YM9916.06C(orf name)|uniprotkb:YMR067C(locus name)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	refseq:NP_013783.1|sgd:S000004671|dip:DIP-5070N|mint:P54730|ensemblfungi:YMR067C(gene)|ensemblfungi:YMR067C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0019898"(extrinsic component of membrane)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030435"(sporulation resulting in formation of a cellular spore)|go:"GO:0044877"(protein-containing complex binding)|interpro:IPR001012(UBX)|interpro:IPR021569|interpro:IPR029071	-	crc64:AB46C88D7ED4F11C	-	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:B+Y/VZraHyjzyGKkVi6LFUfVD3w559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P26570	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-13807|uniprotkb:Q00979|ensemblfungi:YML016C|uniprotkb:D6VZF8	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:ppz1_yeast(display_long)|uniprotkb:PPZ1(gene name)|psi-mi:PPZ1(display_short)|uniprotkb:YM9571.02C(orf name)|uniprotkb:YML016C(locus name)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	ensemblfungi:YML016C(gene)|ensemblfungi:YML016C_mRNA(transcript)|go:"GO:0004722"(protein serine/threonine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006883"(cellular sodium ion homeostasis)|go:"GO:0019897"(extrinsic component of plasma membrane)|go:"GO:0034613"(cellular protein localization)|go:"GO:0046872"(metal ion binding)|go:"GO:0106306"|go:"GO:0106307"|interpro:IPR004843(Metallophosphoesterase)|interpro:IPR006186("Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase")|interpro:IPR011159(Phosphoprotein phosphatase PPZ)|interpro:IPR029052|interpro:IPR031675|refseq:NP_013696.1|sgd:S000004478|mint:P26570|dip:DIP-557N	-	crc64:AB46C88D7ED4F11C	crc64:8B7F009521F72C15	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:aybUrPA5WH/mgdDx6VD8N4F/4x0559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P33329	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-13815|ensemblfungi:YDR436W|uniprotkb:D6VT63	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:ppz2_yeast(display_long)|uniprotkb:PPZ2(gene name)|psi-mi:PPZ2(display_short)|uniprotkb:D9461.22(orf name)|uniprotkb:YDR436W(locus name)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	ensemblfungi:YDR436W(gene)|ensemblfungi:YDR436W_mRNA(transcript)|go:"GO:0004722"(protein serine/threonine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006883"(cellular sodium ion homeostasis)|go:"GO:0046872"(metal ion binding)|go:"GO:0106307"|interpro:IPR004843(Metallophosphoesterase)|interpro:IPR006186("Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase")|interpro:IPR011159(Phosphoprotein phosphatase PPZ)|interpro:IPR029052|interpro:IPR031675|go:"GO:0106306"|refseq:NP_010724.1|sgd:S000002844|mint:P33329|dip:DIP-6355N	-	crc64:AB46C88D7ED4F11C	crc64:3095F37046489AFB	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:WpYxSWimbMNz9ZdZHpezPp/B2Sc559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P32945	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-13787|ensemblfungi:YPL179W|uniprotkb:D6W3I9	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:ppq1_yeast(display_long)|uniprotkb:PPQ1(gene name)|psi-mi:PPQ1(display_short)|uniprotkb:SAL6(gene name synonym)|uniprotkb:YPL179W(locus name)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	ensemblfungi:YPL179W(gene)|ensemblfungi:YPL179W_mRNA(transcript)|go:"GO:0004721"(phosphoprotein phosphatase activity)|go:"GO:0004722"(protein serine/threonine phosphatase activity)|go:"GO:0106307"|interpro:IPR004843(Metallophosphoesterase)|interpro:IPR006186("Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase")|interpro:IPR011159(Phosphoprotein phosphatase PPZ)|interpro:IPR029052|interpro:IPR031675|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0046872"(metal ion binding)|go:"GO:0090029"(negative regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion)|go:"GO:0106306"|refseq:NP_015146.1|sgd:S000006100|dip:DIP-5504N	-	crc64:AB46C88D7ED4F11C	crc64:1E26D05E2865A8C1	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:TZHy65LiDXE7vjMSaCf1/mDd8bA559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P32598	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-13715|ensemblfungi:YER133W|uniprotkb:D3DM39	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:pp12_yeast(display_long)|uniprotkb:GLC7(gene name)|psi-mi:GLC7(display_short)|uniprotkb:CID1(gene name synonym)|uniprotkb:DIS2(gene name synonym)|uniprotkb:YER133W(locus name)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	ensemblfungi:YER133W(gene)|ensemblfungi:YER133W_mRNA(transcript)|go:"GO:0000076"(DNA replication checkpoint signaling)|go:"GO:0000077"(DNA damage checkpoint signaling)|go:"GO:0000164"(protein phosphatase type 1 complex)|go:"GO:0000723"(telomere maintenance)|go:"GO:0000776"(kinetochore)|go:"GO:0001400"(mating projection base)|go:"GO:0004722"(protein serine/threonine phosphatase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0005935"(cellular bud neck)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0006397"(mRNA processing)|go:"GO:0006470"(protein dephosphorylation)|go:"GO:0006873"(cellular ion homeostasis)|go:"GO:0006986"(response to unfolded protein)|go:"GO:0007059"(chromosome segregation)|go:"GO:0007094"(mitotic spindle assembly checkpoint signaling)|go:"GO:0007116"(regulation of cell budding)|go:"GO:0007346"(regulation of mitotic cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0009408"(response to heat)|go:"GO:0005816"(spindle pole body)|go:"GO:0016576"(histone dephosphorylation)|go:"GO:0030437"(ascospore formation)|go:"GO:0031297"(replication fork processing)|go:"GO:0032153"(cell division site)|go:"GO:0034501"(protein localization to kinetochore)|go:"GO:0035307"(positive regulation of protein dephosphorylation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051321"(meiotic cell cycle)|go:"GO:0051726"(regulation of cell cycle)|go:"GO:0061587"(transfer RNA gene-mediated silencing)|go:"GO:0070873"(regulation of glycogen metabolic process)|go:"GO:0106306"|go:"GO:0106307"|go:"GO:1901901"(regulation of protein localization to cell division site involved in cytokinesis)|go:"GO:1903501"(positive regulation of mitotic actomyosin contractile ring assembly)|go:"GO:2000370"(positive regulation of clathrin-dependent endocytosis)|interpro:IPR004843(Metallophosphoesterase)|interpro:IPR006186("Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase")|interpro:IPR029052|interpro:IPR031675|interpro:IPR037981|go:"GO:0070940"(dephosphorylation of RNA polymerase II C-terminal domain)|sgd:S000000935|refseq:NP_011059.3|mint:P32598|dip:DIP-1336N	-	crc64:AB46C88D7ED4F11C	crc64:71B20E3A4ED93235	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:wXXOB38if1fxEN0yLxeYTCXsuyU559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:Q01476	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-19826|uniprotkb:Q99357|uniprotkb:D6W2I2|ensemblfungi:YOR124C	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:ubp2_yeast(display_long)|uniprotkb:UBP2(gene name)|psi-mi:UBP2(display_short)|uniprotkb:YOR124C(locus name)|uniprotkb:O3281(orf name)|uniprotkb:YOR3281C(orf name)|uniprotkb:Ubiquitin-specific-processing protease 2(gene name synonym)|uniprotkb:Deubiquitinating enzyme 2(gene name synonym)|uniprotkb:Ubiquitin thioesterase 2(gene name synonym)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	sgd:S000005650|ensemblfungi:YOR124C(gene)|ensemblfungi:YOR124C_mRNA(transcript)|go:"GO:0004197"(cysteine-type endopeptidase activity)|go:"GO:0004843"(thiol-dependent deubiquitinase)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0010636"(positive regulation of mitochondrial fusion)|go:"GO:0010992"(ubiquitin recycling)|go:"GO:0016578"(histone deubiquitination)|go:"GO:0016579"(protein deubiquitination)|go:"GO:0043162"(ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway)|interpro:IPR001394(Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2)|interpro:IPR018200|interpro:IPR025305|interpro:IPR028889|interpro:IPR038765|reactome:R-SCE-5689880|reactome:R-SCE-6781823|reactome:R-SCE-6782135|reactome:R-SCE-6782210|reactome:R-SCE-8866652|reactome:R-SCE-8948747|refseq:NP_014767.3|dip:DIP-2647N|mint:Q01476	-	crc64:AB46C88D7ED4F11C	-	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:wvzwwQr30ORu21tW5V8taIKw1V4559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P43587	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-22913|uniprotkb:D6VTN3|ensemblfungi:YFR003C	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:ypi1_yeast(display_long)|uniprotkb:YFR003C(locus name)|uniprotkb:YPI1(gene name)|psi-mi:YPI1(display_short)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	refseq:NP_116658.1|sgd:S000001899|dip:DIP-5442N|mint:P43587|ensemblfungi:YFR003C(gene)|ensemblfungi:YFR003C_mRNA(transcript)|go:"GO:0004865"(protein serine/threonine phosphatase inhibitor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0006873"(cellular ion homeostasis)|go:"GO:0007094"(mitotic spindle assembly checkpoint signaling)|go:"GO:0008157"(protein phosphatase 1 binding)|go:"GO:0032515"(negative regulation of phosphoprotein phosphatase activity)|go:"GO:0032516"(positive regulation of phosphoprotein phosphatase activity)|go:"GO:0035308"(negative regulation of protein dephosphorylation)|go:"GO:0072542"(protein phosphatase activator activity)|go:"GO:1900180"(regulation of protein localization to nucleus)|interpro:IPR011107(Protein phosphatase inhibitor)	-	crc64:AB46C88D7ED4F11C	crc64:E191184DCD5EF8A1	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:9O1nEkPevKE4PL5c7cu+WdqATL8559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P38349	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-21157|uniprotkb:D6VQR9|ensemblfungi:YBR273C	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:ubx7_yeast(display_long)|uniprotkb:YBR1741(orf name)|uniprotkb:YBR273C(locus name)|uniprotkb:UBX7(gene name)|psi-mi:UBX7(display_short)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	refseq:NP_009832.1|sgd:S000000477|mint:P38349|dip:DIP-4498N|ensemblfungi:YBR273C(gene)|ensemblfungi:YBR273C_mRNA(transcript)|go:"GO:0005635"(nuclear envelope)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0030435"(sporulation resulting in formation of a cellular spore)|interpro:IPR001012(UBX)|interpro:IPR029071	-	crc64:AB46C88D7ED4F11C	-	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:5qnD0uPooYQPRZby9+kcjyXDb8Y559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:Q04311	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-784329|uniprotkb:D6VS36|uniprotkb:Q66RH0|ensemblfungi:YDR049W	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:vms1_yeast(display_long)|uniprotkb:YDR049W(locus name)|uniprotkb:VMS1(gene name)|psi-mi:VMS1(display_short)|uniprotkb:VCP/CDC48-associated mitochondrial stress-responsive protein 1(gene name synonym)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	refseq:NP_010334.1|sgd:S000002456|mint:Q04311|dip:DIP-6303N|ensemblfungi:YDR049W(gene)|ensemblfungi:YDR049W_mRNA(transcript)|go:"GO:0004045"(aminoacyl-tRNA hydrolase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005739"(mitochondrion)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005829"(cytosol)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0036266"(Cdc48p-Npl4p-Vms1p AAA ATPase complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0071630"(nuclear protein quality control by the ubiquitin-proteasome system)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|interpro:IPR036770|interpro:IPR041175|rcsb pdb:5WHG|rcsb pdb:6R87|rcsb pdb:6R86	-	crc64:AB46C88D7ED4F11C	crc64:98A2007E5591A220	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:L63HNWxt77Qg5uxDK2ZOKUyf9Yk559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P54860	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-20003|uniprotkb:D6VRG3|ensemblfungi:YDL190C	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:ufd2_yeast(display_long)|uniprotkb:UFD2(gene name)|psi-mi:UFD2(display_short)|uniprotkb:YDL190C(locus name)|uniprotkb:D1255(orf name)|uniprotkb:Ubiquitin fusion degradation protein 2(gene name synonym)|uniprotkb:Ubiquitin conjugation factor E4(gene name synonym)|uniprotkb:RING-type E3 ubiquitin transferase UFD2(gene name synonym)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	refseq:NP_010091.2|sgd:S000002349|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0031398"(positive regulation of protein ubiquitination)|go:"GO:0034450"(ubiquitin-ubiquitin ligase activity)|go:"GO:0070936"(protein K48-linked ubiquitination)|interpro:IPR003613(U box)|interpro:IPR013083(Zinc finger, RING/FYVE/PHD-type)|go:"GO:0016567"(protein ubiquitination)|interpro:IPR019474|rcsb pdb:2QIZ|rcsb pdb:2QJ0|rcsb pdb:3M62|rcsb pdb:3M63|reactome:R-SCE-983168|ensemblfungi:YDL190C(gene)|ensemblfungi:YDL190C_mRNA(transcript)|go:"GO:0000151"(ubiquitin ligase complex)|go:"GO:0000209"(protein polyubiquitination)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|dip:DIP-5925N|mint:P54860	-	crc64:AB46C88D7ED4F11C	crc64:877ACB59AC29634A	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:E8YkPPAM7RTsLwjUHSHNCjQWq9M559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P36047	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-16783|ensemblfungi:YKL193C|uniprotkb:D6VX07	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:sds22_yeast(display_long)|uniprotkb:YKL193C(locus name)|uniprotkb:SDS22(gene name)|psi-mi:SDS22(display_short)|uniprotkb:EGP1(gene name synonym)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	interpro:IPR032675|interpro:IPR003591(Leucine-rich repeat, typical subtype)|ensemblfungi:YKL193C(gene)|ensemblfungi:YKL193C_mRNA(transcript)|go:"GO:0000164"(protein phosphatase type 1 complex)|go:"GO:0004865"(protein serine/threonine phosphatase inhibitor activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0007059"(chromosome segregation)|go:"GO:0051301"(cell division)|go:"GO:0051457"(maintenance of protein location in nucleus)|go:"GO:0072542"(protein phosphatase activator activity)|interpro:IPR001611(Leucine-rich repeat)|refseq:NP_012728.1|sgd:S000001676|dip:DIP-2378N|mint:P36047	-	crc64:AB46C88D7ED4F11C	crc64:1EF434C7276ABAEA	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:0EB+IWHQJapt77CfEgNmk733koU559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P36037	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-6017|uniprotkb:D6VWZ0|ensemblfungi:YKL213C	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:doa1_yeast(display_long)|uniprotkb:YKL213C(locus name)|uniprotkb:DOA1(gene name)|psi-mi:DOA1(display_short)|uniprotkb:UFD3(gene name synonym)|uniprotkb:ZZZ4(gene name synonym)|uniprotkb:Degradation of alpha protein 1(gene name synonym)|uniprotkb:Ubiquitin fusion degradation protein 3(gene name synonym)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	refseq:NP_012709.1|sgd:S000001696|dip:DIP-6274N|mint:P36037|ensemblfungi:YKL213C(gene)|ensemblfungi:YKL213C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006303"(double-strand break repair via nonhomologous end joining)|go:"GO:0010008"(endosome membrane)|go:"GO:0010992"(ubiquitin recycling)|go:"GO:0032473"(cytoplasmic side of mitochondrial outer membrane)|go:"GO:0034517"(ribophagy)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:0140036"(ubiquitin-dependent protein binding)|interpro:IPR001680(WD40 repeat)|interpro:IPR011989(Armadillo-like helical)|interpro:IPR013535(PUL)|interpro:IPR015155("PFU (PLAA family ubiquitin binding)")|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR020472|interpro:IPR036322|interpro:IPR038122|rcsb pdb:3GAE|rcsb pdb:3L3F|rcsb pdb:3ODT|rcsb pdb:3PSP|rcsb pdb:3PST|reactome:R-SCE-8951664|reactome:R-SCE-983168	-	crc64:AB46C88D7ED4F11C	crc64:593B808169283B5F	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:LDW5eHy5h0O5as31w32uEH3P4kc559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P07991	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-12430|ensemblfungi:YLR438W|uniprotkb:D6VZ72	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:oat_yeast(display_long)|uniprotkb:CAR2(gene name)|psi-mi:CAR2(display_short)|uniprotkb:CARGB(gene name synonym)|uniprotkb:YLR438W(locus name)|uniprotkb:L9753.2(orf name)|uniprotkb:Ornithine--oxo-acid aminotransferase(gene name synonym)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	ensemblfungi:YLR438W(gene)|ensemblfungi:YLR438W_mRNA(transcript)|go:"GO:0004587"(ornithine-oxo-acid transaminase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006527"(arginine catabolic process)|go:"GO:0006591"(ornithine metabolic process)|go:"GO:0010121"(arginine catabolic process to proline via ornithine)|go:"GO:0019544"(arginine catabolic process to glutamate)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042802"(identical protein binding)|go:"GO:0050155"("ornithine(lysine) transaminase activity")|go:"GO:0055129"(L-proline biosynthetic process)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR010164(Ornithine aminotransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:NP_013542.1|sgd:S000004430|dip:DIP-1225N|reactome:R-SCE-8964539	-	crc64:AB46C88D7ED4F11C	crc64:A0B6BE492FC5C1B8	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:yDHpJ9F41bj9y7BFrkgMqSt+R08559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)
uniprotkb:P34223	uniprotkb:P25694	intact:EBI-17093|ensemblfungi:YBL058W|uniprotkb:D6VPU2|uniprotkb:E9P8S9	intact:EBI-4308|ensemblfungi:YDL126C|uniprotkb:D6VRM4	psi-mi:ubx1_yeast(display_long)|uniprotkb:SHP1(gene name)|psi-mi:SHP1(display_short)|uniprotkb:YBL058W(locus name)|uniprotkb:YBL0509(orf name)|uniprotkb:YBL0515(orf name)|uniprotkb:UBX1(gene name synonym)|uniprotkb:Suppressor of high-copy PP1 protein(gene name synonym)	psi-mi:cdc48_yeast(display_long)|uniprotkb:CDC48(gene name)|psi-mi:CDC48(display_short)|uniprotkb:Cell division cycle protein 48(gene name synonym)|uniprotkb:Transitional endoplasmic reticulum ATPase homolog(gene name synonym)|uniprotkb:YDL126C(locus name)	psi-mi:"MI:0019"(coimmunoprecipitation)	Cooney et al. (2019)	pubmed:31249134|imex:IM-28194	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0465"(DIP)	intact:EBI-21915167|imex:IM-28194-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009495.1|sgd:S000000154|ensemblfungi:YBL058W(gene)|ensemblfungi:YBL058W_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0005977"(glycogen metabolic process)|go:"GO:0007030"(Golgi organization)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030437"(ascospore formation)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031468"(nuclear membrane reassembly)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061025"(membrane fusion)|interpro:IPR001012(UBX)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR012989(SEP)|interpro:IPR029071|interpro:IPR036241|rcsb pdb:6OPC|dip:DIP-2789N|mint:P34223	refseq:NP_010157.1|sgd:S000002284|ensemblfungi:YDL126C(gene)|ensemblfungi:YDL126C_mRNA(transcript)|go:"GO:0000837"(Doa10p ubiquitin ligase complex)|dip:DIP-2704N|mint:P25694|go:"GO:0000839"(Hrd1p ubiquitin ligase ERAD-L complex)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005739"(mitochondrion)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005829"(cytosol)|go:"GO:0006274"(DNA replication termination)|go:"GO:0010636"(positive regulation of mitochondrial fusion)|go:"GO:0016236"(macroautophagy)|go:"GO:0016320"(endoplasmic reticulum membrane fusion)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019888"(protein phosphatase regulator activity)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0030894"(replisome)|go:"GO:0030970"(retrograde protein transport, ER to cytosol)|go:"GO:0031134"(sister chromatid biorientation)|go:"GO:0031593"(polyubiquitin modification-dependent protein binding)|go:"GO:0034098"(VCP-NPL4-UFD1 AAA ATPase complex)|go:"GO:0034517"(ribophagy)|go:"GO:0034727"(piecemeal microautophagy of the nucleus)|go:"GO:0036266"(Cdc48p-Npl4p-Vms1p AAA ATPase complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043328"(protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway)|go:"GO:0043332"(mating projection tip)|go:"GO:0043624"|go:"GO:0046034"(ATP metabolic process)|go:"GO:0051228"(mitotic spindle disassembly)|go:"GO:0051974"(negative regulation of telomerase activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071629"(cytoplasm protein quality control by the ubiquitin-proteasome system)|go:"GO:0071630"(nuclear protein quality control by the ubiquitin-proteasome system)|go:"GO:0071712"(ER-associated misfolded protein catabolic process)|go:"GO:0072671"(mitochondria-associated ubiquitin-dependent protein catabolic process)|go:"GO:0097352"(autophagosome maturation)|go:"GO:0120174"(stress-induced homeostatically regulated protein degradation pathway)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|go:"GO:1900182"(positive regulation of protein localization to nucleus)|go:"GO:1990112"(RQC complex)|go:"GO:1990116"(ribosome-associated ubiquitin-dependent protein catabolic process)|go:"GO:1990171"(SCF complex disassembly in response to cadmium stress)|go:"GO:2001168"(positive regulation of histone H2B ubiquitination)|interpro:IPR003338(AAA ATPase VAT, N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR004201(Cell division protein 48, CDC48, domain 2)|interpro:IPR005938(AAA ATPase, CDC48)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR015415(Vps4 oligomerisation, C-terminal)|interpro:IPR027417|interpro:IPR029067|interpro:IPR041569|rcsb pdb:6OA9|rcsb pdb:6OAA|rcsb pdb:6OAB|rcsb pdb:6OMB|rcsb pdb:6OPC|reactome:R-SCE-110320|reactome:R-SCE-3371511|reactome:R-SCE-532668|reactome:R-SCE-5358346|reactome:R-SCE-5689896|reactome:R-SCE-6798695|reactome:R-SCE-8876725	-	crc64:AB46C88D7ED4F11C	crc64:02ADDB9A227614D8	figure legend:Fig S10|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	-	2019/07/13	2019/07/13	rogid:4AfNSojU3u+tuCxP+u89jtHmmPo559292	rogid:qM/04kWcyjkQ3QCa3WklyvhNigE559292	rigid:/6j35gQwhxh0pOKWy5W5XyXBgNM	false	flag tag:c-c	-	-	-	psi-mi:"MI:0658"(multidimensional protein identification technology)	psi-mi:"MI:0658"(multidimensional protein identification technology)