#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:P18616 uniprotkb:Q9LUJ3 intact:EBI-1540537|uniprotkb:P31635|uniprotkb:Q9SZS8|uniprotkb:Q56Z04|ensemblplants:AT4G35800.1|ensemblplants:AT4G35800.2 intact:EBI-15850569|ensemblplants:AT3G22680.1|uniprotkb:Q84MD0 psi-mi:nrpb1_arath(display_long)|uniprotkb:DNA-directed RNA polymerase II largest subunit(gene name synonym)|uniprotkb:DNA-directed RNA polymerase II subunit 1(gene name synonym)|uniprotkb:NRPB1(gene name)|psi-mi:NRPB1(display_short)|uniprotkb:RPB1(gene name synonym)|uniprotkb:RPB205(gene name synonym)|uniprotkb:RPII(gene name synonym)|uniprotkb:F4B14.70(orf name)|uniprotkb:At4g35800(locus name) psi-mi:rdm1_arath(display_long)|uniprotkb:RDM1(gene name)|psi-mi:RDM1(display_short)|uniprotkb:Protein RNA-directed DNA methylation 1(gene name synonym)|uniprotkb:MWI23.5(orf name)|uniprotkb:At3g22680(locus name) psi-mi:"MI:0006"(anti bait coimmunoprecipitation) Gao et al. (2010) pubmed:20410883|doi:10.1038/nature09025|imex:IM-16316 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-15850592|imex:IM-16316-1|dip:DIP-187483E - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_195305.2|refseq:NP_001329346.1|dip:DIP-40008N|ensemblplants:AT4G35800(gene)|ensemblplants:AT4G35800.1(transcript)|ensemblplants:AT4G35800.2(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005773"(vacuole)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0009506"(plasmodesma)|go:"GO:0046872"(metal ion binding)|interpro:IPR000684(RNA polymerase II, heptapeptide repeat, eukaryotic)|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007073(RNA polymerase Rpb1, domain 7)|interpro:IPR007075(RNA polymerase Rpb1, domain 6)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR038120|interpro:IPR038593|interpro:IPR042102 ensemblplants:AT3G22680(gene)|ensemblplants:AT3G22680.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0043621"(protein self-association)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0070918"(primary sncRNA processing)|interpro:IPR015270(Protein of unknown function DUF1950)|interpro:IPR036319|rcsb pdb:1VK5|rcsb pdb:2Q3T|rcsb pdb:3GAN|rcsb pdb:6OIS|rcsb pdb:6OIT|refseq:NP_188907.2|dip:DIP-59278N psi-mi:"MI:0465"(dip) - - full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") - 2017/08/06 2017/08/10 rogid:d+KJYil9+hodjkCjOaNefD/uBDo3702 rogid:6STtXrTjm0Rvf3a0D4IGOcX+cYw3702 rigid:dFDKXX3uws7RdCF9Q2y5DHo7fNE false - - - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:Q9M548 uniprotkb:Q9LUJ3 intact:EBI-6923904|ensemblplants:AT5G14620.1|uniprotkb:Q9LYJ7|uniprotkb:Q9LYJ8 intact:EBI-15850569|ensemblplants:AT3G22680.1|uniprotkb:Q84MD0 psi-mi:drm2_arath(display_long)|uniprotkb:DRM2(gene name)|psi-mi:DRM2(display_short)|uniprotkb:Protein DOMAINS REARRANGED METHYLASE 2(gene name synonym)|uniprotkb:T15N1.110/T15N1.120(orf name)|uniprotkb:At5g14620/At5g14630(locus name) psi-mi:rdm1_arath(display_long)|uniprotkb:RDM1(gene name)|psi-mi:RDM1(display_short)|uniprotkb:Protein RNA-directed DNA methylation 1(gene name synonym)|uniprotkb:MWI23.5(orf name)|uniprotkb:At3g22680(locus name) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Gao et al. (2010) pubmed:20410883|doi:10.1038/nature09025|imex:IM-16316 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-15850609|imex:IM-16316-2|dip:DIP-187481E - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G14620(gene)|ensemblplants:AT5G14620.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0009008"(DNA-methyltransferase activity)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0050832"(defense response to fungus)|go:"GO:0051567"(histone H3-K9 methylation)|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|interpro:IPR009060(UBA-like)|interpro:IPR015940(Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)|interpro:IPR030380|interpro:IPR029063|refseq:NP_196966.2|dip:DIP-59279N ensemblplants:AT3G22680(gene)|ensemblplants:AT3G22680.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0043621"(protein self-association)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0070918"(primary sncRNA processing)|interpro:IPR015270(Protein of unknown function DUF1950)|interpro:IPR036319|rcsb pdb:1VK5|rcsb pdb:2Q3T|rcsb pdb:3GAN|rcsb pdb:6OIS|rcsb pdb:6OIT|refseq:NP_188907.2|dip:DIP-59278N psi-mi:"MI:0465"(dip) - - full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") - 2017/08/06 2017/08/10 rogid:3KptoF31WNjcCxnLlXEYJ2tSDsU3702 rogid:6STtXrTjm0Rvf3a0D4IGOcX+cYw3702 rigid:8zd2zdmQoxtlGh7bKtkzDIwUTho false flag tag:n-n - - - psi-mi:"MI:0705"(anti tag western blot) psi-mi:"MI:0705"(anti tag western blot) uniprotkb:Q9ZVD5 uniprotkb:Q9LUJ3 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 intact:EBI-15850569|ensemblplants:AT3G22680.1|uniprotkb:Q84MD0 psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:rdm1_arath(display_long)|uniprotkb:RDM1(gene name)|psi-mi:RDM1(display_short)|uniprotkb:Protein RNA-directed DNA methylation 1(gene name synonym)|uniprotkb:MWI23.5(orf name)|uniprotkb:At3g22680(locus name) psi-mi:"MI:0006"(anti bait coimmunoprecipitation) Gao et al. (2010) pubmed:20410883|doi:10.1038/nature09025|imex:IM-16316 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-15850628|imex:IM-16316-3|dip:DIP-187482E - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 ensemblplants:AT3G22680(gene)|ensemblplants:AT3G22680.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0043621"(protein self-association)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0070918"(primary sncRNA processing)|interpro:IPR015270(Protein of unknown function DUF1950)|interpro:IPR036319|rcsb pdb:1VK5|rcsb pdb:2Q3T|rcsb pdb:3GAN|rcsb pdb:6OIS|rcsb pdb:6OIT|refseq:NP_188907.2|dip:DIP-59278N psi-mi:"MI:0465"(dip) - - full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") - 2017/08/06 2017/08/10 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 rogid:6STtXrTjm0Rvf3a0D4IGOcX+cYw3702 rigid:ZHJ5O11XOtWC1Zhzy0uhZTKfn4o false myc tag:n-n - - - psi-mi:"MI:0705"(anti tag western blot) psi-mi:"MI:0705"(anti tag western blot) uniprotkb:Q9M548 uniprotkb:Q9LUJ3 intact:EBI-6923904|ensemblplants:AT5G14620.1|uniprotkb:Q9LYJ7|uniprotkb:Q9LYJ8 intact:EBI-15850569|ensemblplants:AT3G22680.1|uniprotkb:Q84MD0 psi-mi:drm2_arath(display_long)|uniprotkb:DRM2(gene name)|psi-mi:DRM2(display_short)|uniprotkb:Protein DOMAINS REARRANGED METHYLASE 2(gene name synonym)|uniprotkb:T15N1.110/T15N1.120(orf name)|uniprotkb:At5g14620/At5g14630(locus name) psi-mi:rdm1_arath(display_long)|uniprotkb:RDM1(gene name)|psi-mi:RDM1(display_short)|uniprotkb:Protein RNA-directed DNA methylation 1(gene name synonym)|uniprotkb:MWI23.5(orf name)|uniprotkb:At3g22680(locus name) psi-mi:"MI:0006"(anti bait coimmunoprecipitation) Gao et al. (2010) pubmed:20410883|doi:10.1038/nature09025|imex:IM-16316 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-15850647|imex:IM-16316-4|dip:DIP-187481E - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G14620(gene)|ensemblplants:AT5G14620.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0009008"(DNA-methyltransferase activity)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0050832"(defense response to fungus)|go:"GO:0051567"(histone H3-K9 methylation)|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|interpro:IPR009060(UBA-like)|interpro:IPR015940(Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)|interpro:IPR030380|interpro:IPR029063|refseq:NP_196966.2|dip:DIP-59279N ensemblplants:AT3G22680(gene)|ensemblplants:AT3G22680.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0043621"(protein self-association)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0070918"(primary sncRNA processing)|interpro:IPR015270(Protein of unknown function DUF1950)|interpro:IPR036319|rcsb pdb:1VK5|rcsb pdb:2Q3T|rcsb pdb:3GAN|rcsb pdb:6OIS|rcsb pdb:6OIT|refseq:NP_188907.2|dip:DIP-59278N psi-mi:"MI:0465"(dip) - - full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") - 2017/08/06 2017/08/10 rogid:3KptoF31WNjcCxnLlXEYJ2tSDsU3702 rogid:6STtXrTjm0Rvf3a0D4IGOcX+cYw3702 rigid:8zd2zdmQoxtlGh7bKtkzDIwUTho false flag tag:n-n - - - psi-mi:"MI:0705"(anti tag western blot) psi-mi:"MI:0705"(anti tag western blot) uniprotkb:Q9LUJ3 uniprotkb:Q9LUJ3 intact:EBI-15850569|ensemblplants:AT3G22680.1|uniprotkb:Q84MD0 intact:EBI-15850569|ensemblplants:AT3G22680.1|uniprotkb:Q84MD0 psi-mi:rdm1_arath(display_long)|uniprotkb:RDM1(gene name)|psi-mi:RDM1(display_short)|uniprotkb:Protein RNA-directed DNA methylation 1(gene name synonym)|uniprotkb:MWI23.5(orf name)|uniprotkb:At3g22680(locus name) psi-mi:rdm1_arath(display_long)|uniprotkb:RDM1(gene name)|psi-mi:RDM1(display_short)|uniprotkb:Protein RNA-directed DNA methylation 1(gene name synonym)|uniprotkb:MWI23.5(orf name)|uniprotkb:At3g22680(locus name) psi-mi:"MI:0018"(two hybrid) Gao et al. (2010) pubmed:20410883|doi:10.1038/nature09025|imex:IM-16316 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0407"(direct interaction) psi-mi:"MI:0465"(DIP) intact:EBI-15850666|imex:IM-16316-5|dip:DIP-187484E - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT3G22680(gene)|ensemblplants:AT3G22680.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0043621"(protein self-association)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0070918"(primary sncRNA processing)|interpro:IPR015270(Protein of unknown function DUF1950)|interpro:IPR036319|rcsb pdb:1VK5|rcsb pdb:2Q3T|rcsb pdb:3GAN|rcsb pdb:6OIS|rcsb pdb:6OIT|refseq:NP_188907.2|dip:DIP-59278N ensemblplants:AT3G22680(gene)|ensemblplants:AT3G22680.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0043621"(protein self-association)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0070918"(primary sncRNA processing)|interpro:IPR015270(Protein of unknown function DUF1950)|interpro:IPR036319|rcsb pdb:1VK5|rcsb pdb:2Q3T|rcsb pdb:3GAN|rcsb pdb:6OIS|rcsb pdb:6OIT|refseq:NP_188907.2|dip:DIP-59278N psi-mi:"MI:0465"(dip) - - full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2017/08/06 2017/08/10 rogid:6STtXrTjm0Rvf3a0D4IGOcX+cYw3702 rogid:6STtXrTjm0Rvf3a0D4IGOcX+cYw3702 rigid:0Xo4Hkceyhb1FJwjPyuiepdWC6A false mutation disrupting interaction:132-132,128-128 mutation disrupting interaction:132-132,128-128 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P18616 uniprotkb:Q9LUJ3 intact:EBI-1540537|uniprotkb:P31635|uniprotkb:Q9SZS8|uniprotkb:Q56Z04|ensemblplants:AT4G35800.1|ensemblplants:AT4G35800.2 intact:EBI-15850569|ensemblplants:AT3G22680.1|uniprotkb:Q84MD0 psi-mi:nrpb1_arath(display_long)|uniprotkb:DNA-directed RNA polymerase II largest subunit(gene name synonym)|uniprotkb:DNA-directed RNA polymerase II subunit 1(gene name synonym)|uniprotkb:NRPB1(gene name)|psi-mi:NRPB1(display_short)|uniprotkb:RPB1(gene name synonym)|uniprotkb:RPB205(gene name synonym)|uniprotkb:RPII(gene name synonym)|uniprotkb:F4B14.70(orf name)|uniprotkb:At4g35800(locus name) psi-mi:rdm1_arath(display_long)|uniprotkb:RDM1(gene name)|psi-mi:RDM1(display_short)|uniprotkb:Protein RNA-directed DNA methylation 1(gene name synonym)|uniprotkb:MWI23.5(orf name)|uniprotkb:At3g22680(locus name) psi-mi:"MI:0006"(anti bait coimmunoprecipitation) Gao et al. (2010) pubmed:20410883|doi:10.1038/nature09025|imex:IM-16316 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-15850691|imex:IM-16316-6|dip:DIP-187483E - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_195305.2|refseq:NP_001329346.1|dip:DIP-40008N|ensemblplants:AT4G35800(gene)|ensemblplants:AT4G35800.1(transcript)|ensemblplants:AT4G35800.2(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005665"(RNA polymerase II, core complex)|go:"GO:0005773"(vacuole)|go:"GO:0006366"(transcription by RNA polymerase II)|go:"GO:0009506"(plasmodesma)|go:"GO:0046872"(metal ion binding)|interpro:IPR000684(RNA polymerase II, heptapeptide repeat, eukaryotic)|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007073(RNA polymerase Rpb1, domain 7)|interpro:IPR007075(RNA polymerase Rpb1, domain 6)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR038120|interpro:IPR038593|interpro:IPR042102 ensemblplants:AT3G22680(gene)|ensemblplants:AT3G22680.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0043621"(protein self-association)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0070918"(primary sncRNA processing)|interpro:IPR015270(Protein of unknown function DUF1950)|interpro:IPR036319|rcsb pdb:1VK5|rcsb pdb:2Q3T|rcsb pdb:3GAN|rcsb pdb:6OIS|rcsb pdb:6OIT|refseq:NP_188907.2|dip:DIP-59278N psi-mi:"MI:0465"(dip) - - full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") - 2017/08/06 2017/08/10 rogid:d+KJYil9+hodjkCjOaNefD/uBDo3702 rogid:6STtXrTjm0Rvf3a0D4IGOcX+cYw3702 rigid:dFDKXX3uws7RdCF9Q2y5DHo7fNE false - - - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:Q9ZVD5 uniprotkb:Q9LUJ3 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 intact:EBI-15850569|ensemblplants:AT3G22680.1|uniprotkb:Q84MD0 psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:rdm1_arath(display_long)|uniprotkb:RDM1(gene name)|psi-mi:RDM1(display_short)|uniprotkb:Protein RNA-directed DNA methylation 1(gene name synonym)|uniprotkb:MWI23.5(orf name)|uniprotkb:At3g22680(locus name) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Gao et al. (2010) pubmed:20410883|doi:10.1038/nature09025|imex:IM-16316 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0465"(DIP) intact:EBI-15850708|imex:IM-16316-7|dip:DIP-187482E - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 ensemblplants:AT3G22680(gene)|ensemblplants:AT3G22680.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0043621"(protein self-association)|go:"GO:0044030"(regulation of DNA methylation)|go:"GO:0070918"(primary sncRNA processing)|interpro:IPR015270(Protein of unknown function DUF1950)|interpro:IPR036319|rcsb pdb:1VK5|rcsb pdb:2Q3T|rcsb pdb:3GAN|rcsb pdb:6OIS|rcsb pdb:6OIT|refseq:NP_188907.2|dip:DIP-59278N psi-mi:"MI:0465"(dip) - - full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") - 2017/08/06 2017/08/10 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 rogid:6STtXrTjm0Rvf3a0D4IGOcX+cYw3702 rigid:ZHJ5O11XOtWC1Zhzy0uhZTKfn4o false myc tag:n-n - - - psi-mi:"MI:0705"(anti tag western blot) psi-mi:"MI:0705"(anti tag western blot)