#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:Q72FE8 uniprotkb:Q72FF6 intact:EBI-10071896|ensemblbacteria:AAS94749 intact:EBI-11759817|ensemblbacteria:AAS94741 psi-mi:q72fe8_desvh(display_long)|uniprotkb:DVU_0266(locus name) psi-mi:q72ff6_desvh(display_long)|uniprotkb:DVU_0258(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759834 author score:0.893 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94749(transcript)|ensemblbacteria:DVU_0266(gene)|interpro:IPR015943(WD40/YVTN repeat-like) refseq:WP_010937567.1|refseq:YP_009482.1|interpro:IPR011006(CheY-like)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR000014(PAS)|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR013656(PAS fold-4)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR001789(Signal transduction response regulator, receiver region)|ensemblbacteria:AAS94741(transcript)|ensemblbacteria:DVU_0258(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|interpro:IPR035965|interpro:IPR036097|interpro:IPR036890 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:pAQeBO0nB+suC3Z/7B2a1Bna8jc882 rogid:6DBBeM2ivJ4Z9bk6K0YQfThMmGQ882 rigid:sT0cI2ehS9SFzpty4cFiNZQ593U false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FE8 uniprotkb:Q72FF0 intact:EBI-10071896|ensemblbacteria:AAS94749 intact:EBI-10071893|ensemblbacteria:AAS94747 psi-mi:q72fe8_desvh(display_long)|uniprotkb:DVU_0266(locus name) psi-mi:q72ff0_desvh(display_long)|uniprotkb:DVU_0264(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759810 author score:0.998 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94749(transcript)|ensemblbacteria:DVU_0266(gene)|interpro:IPR015943(WD40/YVTN repeat-like) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_009488.1|refseq:WP_010937573.1|ensemblbacteria:AAS94747(transcript)|ensemblbacteria:DVU_0264(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:pAQeBO0nB+suC3Z/7B2a1Bna8jc882 rogid:t19Ou93+B6vQ0rFvwWG5c05wJA8882 rigid:LXbXaTJQxabfK449gl2FqBqh9nc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FE8 uniprotkb:Q72FF3 intact:EBI-10071896|ensemblbacteria:AAS94749 intact:EBI-10067996|ensemblbacteria:AAS94744 psi-mi:q72fe8_desvh(display_long)|uniprotkb:DVU_0266(locus name) psi-mi:q72ff3_desvh(display_long)|uniprotkb:DVU_0261(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759803 author score:0.766 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94749(transcript)|ensemblbacteria:DVU_0266(gene)|interpro:IPR015943(WD40/YVTN repeat-like) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_009485.1|refseq:WP_010937570.1|ensemblbacteria:AAS94744(transcript)|ensemblbacteria:DVU_0261(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:pAQeBO0nB+suC3Z/7B2a1Bna8jc882 rogid:DPmcT0m1/bzdzacQUAw3qCATXoM882 rigid:6Mkl1fXyp9XBGqK0C8ozNHNaMV4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FF2 uniprotkb:Q72FF3 intact:EBI-11759790|ensemblbacteria:AAS94745 intact:EBI-10067996|ensemblbacteria:AAS94744 psi-mi:q72ff2_desvh(display_long)|uniprotkb:DVU_0262(locus name) psi-mi:q72ff3_desvh(display_long)|uniprotkb:DVU_0261(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759796 author score:0.531 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937571.1|refseq:YP_009486.1|ensemblbacteria:AAS94745(transcript)|ensemblbacteria:DVU_0262(gene) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_009485.1|refseq:WP_010937570.1|ensemblbacteria:AAS94744(transcript)|ensemblbacteria:DVU_0261(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:IPSp9jdXxmf4CjeNICvinHXTBLI882 rogid:DPmcT0m1/bzdzacQUAw3qCATXoM882 rigid:XuMntCgwnjQiIjQDiiPa/5Di4IE false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FP0 uniprotkb:Q72FP1 intact:EBI-10071733|ensemblbacteria:AAS94657 intact:EBI-10071935|ensemblbacteria:AAS94656 psi-mi:q72fp0_desvh(display_long)|uniprotkb:DVU_0173(locus name) psi-mi:q72fp1_desvh(display_long)|uniprotkb:DVU_0172(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759783 author score:0.686 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937484.1|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_009398.1|ensemblbacteria:AAS94657(transcript)|ensemblbacteria:DVU_0173(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding) interpro:IPR017896|interpro:IPR017900|refseq:YP_009397.1|refseq:WP_010937483.1|ensemblbacteria:AAS94656(transcript)|ensemblbacteria:DVU_0172(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:HOWDlzWfMJqA2qohHsZrDe3Oqqk882 rogid:6oB91/fAr4PPRje2nLQv5a1GfNE882 rigid:w/TsHIIhFmNwe1S7115HxUDTtvM false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FY9 uniprotkb:Q72FZ1 intact:EBI-11759766|ensemblbacteria:AAS94558 intact:EBI-11759755|ensemblbacteria:AAS94556 psi-mi:q72fy9_desvh(display_long)|uniprotkb:DVU_0074(locus name) psi-mi:q72fz1_desvh(display_long)|uniprotkb:DVU_0072(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759776 author score:0.474 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937385.1|refseq:YP_009299.1|interpro:IPR014710(RmlC-like jelly roll fold)|interpro:IPR011051(Cupin, RmlC-type)|ensemblbacteria:AAS94558(transcript)|ensemblbacteria:DVU_0074(gene) interpro:IPR013446(Glucose-1-phosphate cytidylyltransferase)|refseq:WP_010937383.1|refseq:YP_009297.1|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR029044|ensemblbacteria:AAS94556(transcript)|ensemblbacteria:DVU_0072(gene)|go:"GO:0009058"(biosynthetic process)|go:"GO:0047343"(glucose-1-phosphate cytidylyltransferase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:QoIJwQYGdjR4EQzvo9VlN4duW5I882 rogid:i9p0bP/a6WrsBABhFCIFCTSkDWI882 rigid:5SDBDp2P6jZLftWXOngn7IodwU0 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q72F93 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-11759874|ensemblbacteria:AAS94804 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:coax_desvh(display_long)|uniprotkb:coaX(gene name)|psi-mi:coaX(display_short)|uniprotkb:PanK-III(gene name synonym)|uniprotkb:Pantothenic acid kinase(gene name synonym)|uniprotkb:DVU_0321(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759887 author score:0.674 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849 refseq:WP_010937628.1|refseq:YP_009545.1|interpro:IPR004619(Bordetella pertussis Bvg accessory factor)|interpro:IPR043129|ensemblbacteria:AAS94804(transcript)|ensemblbacteria:DVU_0321(gene)|go:"GO:0004594"(pantothenate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0046872"(metal ion binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:vbnNMcMrRwNgAmsNC0jW/SryRzY882 rigid:OlVMyx5veQeu+rTgBT/hnbZ+erQ false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62450 uniprotkb:P62364 intact:EBI-10064978|ensemblbacteria:AAS94769 intact:EBI-11759848|ensemblbacteria:AAS94598 psi-mi:his6_desvh(display_long)|uniprotkb:IGP synthase cyclase subunit(gene name synonym)|uniprotkb:IGP synthase subunit HisF(gene name synonym)|uniprotkb:ImGP synthase subunit HisF(gene name synonym)|uniprotkb:DVU_0286(locus name)|uniprotkb:hisF(gene name)|psi-mi:hisF(display_short) psi-mi:his1_desvh(display_long)|uniprotkb:hisG(gene name)|psi-mi:hisG(display_short)|uniprotkb:DVU_0114(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759867 author score:0.777 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004651(Histidine biosynthesis, HisF)|interpro:IPR006062(Histidine biosynthesis)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009510.1|refseq:WP_010937595.1|ensemblbacteria:AAS94769(transcript)|ensemblbacteria:DVU_0286(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0000107"(imidazoleglycerol-phosphate synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0016829"(lyase activity) refseq:WP_010937425.1|refseq:YP_009339.1|interpro:IPR013820(ATP phosphoribosyltransferase, catalytic region)|interpro:IPR018198|interpro:IPR001348("Histidine biosynthesis HisG: ATP phosphoribosyltransferase")|interpro:IPR020621|interpro:IPR013115(Histidine biosynthesis HisG, C-terminal)|interpro:IPR011322(Nitrogen regulatory PII-like, alpha/beta)|interpro:IPR015867(Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal)|ensemblbacteria:AAS94598(transcript)|ensemblbacteria:DVU_0114(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003879"(ATP phosphoribosyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:4xHW6/vARu+RwFf9UnBK9t2kzpI882 rogid:SBYy0gjub8euyFkq33Sxr2Ff1jo882 rigid:MrvAU/rcNVP74EjnRkkSLflhE+Q false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62450 uniprotkb:P61779 intact:EBI-10064978|ensemblbacteria:AAS94769 intact:EBI-10064985|ensemblbacteria:AAS94768 psi-mi:his6_desvh(display_long)|uniprotkb:IGP synthase cyclase subunit(gene name synonym)|uniprotkb:IGP synthase subunit HisF(gene name synonym)|uniprotkb:ImGP synthase subunit HisF(gene name synonym)|uniprotkb:DVU_0286(locus name)|uniprotkb:hisF(gene name)|psi-mi:hisF(display_short) psi-mi:his5_desvh(display_long)|uniprotkb:IGP synthase subunit HisH(gene name synonym)|uniprotkb:ImGP synthase subunit HisH(gene name synonym)|uniprotkb:DVU_0285(locus name)|uniprotkb:hisH(gene name)|psi-mi:hisH(display_short)|uniprotkb:IGP synthase glutaminase subunit(gene name synonym) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759841 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004651(Histidine biosynthesis, HisF)|interpro:IPR006062(Histidine biosynthesis)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009510.1|refseq:WP_010937595.1|ensemblbacteria:AAS94769(transcript)|ensemblbacteria:DVU_0286(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0000107"(imidazoleglycerol-phosphate synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0016829"(lyase activity) interpro:IPR010139(Imidazole glycerol phosphate synthase, subunit H)|interpro:IPR017926|interpro:IPR029062|refseq:WP_010937594.1|refseq:YP_009509.1|ensemblbacteria:AAS94768(transcript)|ensemblbacteria:DVU_0285(gene)|go:"GO:0000107"(imidazoleglycerol-phosphate synthase activity)|go:"GO:0004359"(glutaminase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0000105"(histidine biosynthetic process) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:4xHW6/vARu+RwFf9UnBK9t2kzpI882 rogid:pkkcUYckOQc+xrA/m1VOG/2gNgM882 rigid:LEBuvdokMAtzZhpTep8V3HNN3lk false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV5 uniprotkb:Q72EV7 intact:EBI-10065482|ensemblbacteria:AAS94946 intact:EBI-10091224|ensemblbacteria:AAS94944 psi-mi:q72ev5_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate synthase(gene name synonym)|uniprotkb:DVU_0463(locus name)|uniprotkb:aroA(gene name)|psi-mi:aroA(display_short) psi-mi:q72ev7_desvh(display_long)|uniprotkb:DVU_0461(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760033 author score:0.558 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001986(3-phosphoshikimate 1-carboxyvinyltransferase, core)|interpro:IPR006264(3-phosphoshikimate 1-carboxyvinyltransferase, subgroup)|interpro:IPR013792(RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)|refseq:WP_010937770.1|refseq:YP_009687.1|ensemblbacteria:AAS94946(transcript)|ensemblbacteria:DVU_0463(gene)|go:"GO:0003866"(3-phosphoshikimate 1-carboxyvinyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR036968 interpro:IPR002812(3-dehydroquinate synthase, prokaryotic-type)|refseq:YP_009685.1|refseq:WP_010937768.1|ensemblbacteria:AAS94944(transcript)|ensemblbacteria:DVU_0461(gene)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016491"(oxidoreductase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:wTgIPqX9LPxWksya/Ts48V+an18882 rogid:mwofksyiY4DfvShUI1oibskQqkI882 rigid:A1132woLcsvsq5JrlAtvMoF/E2Q false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV6 uniprotkb:Q72EV7 intact:EBI-10089656|ensemblbacteria:AAS94945 intact:EBI-10091224|ensemblbacteria:AAS94944 psi-mi:q72ev6_desvh(display_long)|uniprotkb:Chorismate mutase(gene name synonym)|uniprotkb:Chorismate mutase-prephenate dehydratase(gene name synonym)|uniprotkb:Prephenate dehydratase(gene name synonym)|uniprotkb:p-protein(gene name synonym)|uniprotkb:DVU_0462(locus name) psi-mi:q72ev7_desvh(display_long)|uniprotkb:DVU_0461(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760026 author score:0.747 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001086(Prephenate dehydratase)|interpro:IPR002701(Chorismate mutase)|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR008242(Bifunctional chorismate mutase/prephenate dehydratase P-protein)|refseq:YP_009686.1|refseq:WP_010937769.1|ensemblbacteria:AAS94945(transcript)|ensemblbacteria:DVU_0462(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0004664"(prephenate dehydratase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0009094"(L-phenylalanine biosynthetic process)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR036263|interpro:IPR036979 interpro:IPR002812(3-dehydroquinate synthase, prokaryotic-type)|refseq:YP_009685.1|refseq:WP_010937768.1|ensemblbacteria:AAS94944(transcript)|ensemblbacteria:DVU_0461(gene)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016491"(oxidoreductase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:tBuoxwxPmclckWTlqumufFQC8Qs882 rogid:mwofksyiY4DfvShUI1oibskQqkI882 rigid:3OibbopiApPMAu13QjHJjXPQhSU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EZ7 uniprotkb:Q72F01 intact:EBI-10065165|ensemblbacteria:AAS94904 intact:EBI-10071577|ensemblbacteria:AAS94900 psi-mi:q72ez7_desvh(display_long)|uniprotkb:DVU_0421(locus name) psi-mi:q72f01_desvh(display_long)|uniprotkb:DVU_0417(locus name)|uniprotkb:speA(gene name)|psi-mi:speA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760019 author score:0.457 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937728.1|interpro:IPR005925(Putative agmatinase)|interpro:IPR006035(Ureohydrolase)|interpro:IPR020855|refseq:YP_009645.1|ensemblbacteria:AAS94904(transcript)|ensemblbacteria:DVU_0421(gene)|go:"GO:0016813"("hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines")|go:"GO:0046872"(metal ion binding)|interpro:IPR023696 interpro:IPR000183(Orn/DAP/Arg decarboxylase 2)|interpro:IPR002985(Arginine decarboxylase)|interpro:IPR009006(Alanine racemase/group IV decarboxylase, C-terminal)|interpro:IPR022644|interpro:IPR022653|interpro:IPR029066|refseq:YP_009641.1|ensemblbacteria:AAS94900(transcript)|ensemblbacteria:DVU_0417(gene)|go:"GO:0006527"(arginine catabolic process)|go:"GO:0008295"(spermidine biosynthetic process)|go:"GO:0008792"(arginine decarboxylase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR040634|interpro:IPR041128 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:sg5FV00Th193ptxS1xLH01RfruM882 rogid:5t9Qil8MLQ/+Hs6JvepbHUciS/c882 rigid:A8SJQK+Rig91euiEw2tjrPkwlZ4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F03 uniprotkb:Q72F04 intact:EBI-11759997|ensemblbacteria:AAS94898 intact:EBI-11759983|ensemblbacteria:AAS94897 psi-mi:ampa_desvh(display_long)|uniprotkb:pepA(gene name)|psi-mi:pepA(display_short)|uniprotkb:Leucine aminopeptidase(gene name synonym)|uniprotkb:Leucyl aminopeptidase(gene name synonym)|uniprotkb:DVU_0415(locus name) psi-mi:q72f04_desvh(display_long)|uniprotkb:DVU_0414(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760012 author score:0.536 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR043472|refseq:WP_010937722.1|refseq:YP_009639.1|interpro:IPR011356(Peptidase M17, leucyl aminopeptidase)|interpro:IPR000819(Peptidase M17, leucyl aminopeptidase, C-terminal)|interpro:IPR023042|interpro:IPR008283(Peptidase M17, leucyl aminopeptidase, N-terminal)|ensemblbacteria:AAS94898(transcript)|ensemblbacteria:DVU_0415(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0030145"(manganese ion binding)|go:"GO:0070006"(metalloaminopeptidase activity) refseq:WP_010937721.1|refseq:YP_009638.1|interpro:IPR012301(Malic enzyme, N-terminal)|interpro:IPR012302(Malic enzyme, NAD-binding)|interpro:IPR001891(Malic oxidoreductase)|ensemblbacteria:AAS94897(transcript)|ensemblbacteria:DVU_0414(gene)|go:"GO:0004471"("malate dehydrogenase (decarboxylating) (NAD+) activity")|go:"GO:0046872"(metal ion binding)|go:"GO:0051287"(NAD binding)|interpro:IPR036291|interpro:IPR037062 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:cmUNYf8p8P1dQCYRj43nSMdJDpI882 rogid:tyjQljAZuonms9jEzE0WynRtRrM882 rigid:A5uYoLISA6MttrZa2nm4+NOZPug false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F13 uniprotkb:P45574 intact:EBI-10069996|ensemblbacteria:AAS94888 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:q72f13_desvh(display_long)|uniprotkb:Cobyrinic acid a,c-diamide synthetase(gene name synonym)|uniprotkb:cbiA(gene name synonym)|uniprotkb:DVU_0405(locus name)|uniprotkb:cobB-1(gene name)|psi-mi:cobB-1(display_short) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759976 author score:0.639 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR004484(Cobyrinic acid a,c-diamide synthase CbiA)|interpro:IPR011698(CobB/CobQ-like glutamine amidotransferase)|interpro:IPR027417|interpro:IPR029062|refseq:YP_009629.1|refseq:WP_010937712.1|ensemblbacteria:AAS94888(transcript)|ensemblbacteria:DVU_0405(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0009236"(cobalamin biosynthetic process)|go:"GO:0042242"(cobyrinic acid a,c-diamide synthase activity) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:bFjBPICxF7WxZiyxcioI5nqmbDw882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 rigid:Sz1ByOti6lngejeQM3S0Zi0t1nw false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45575 uniprotkb:P45574 intact:EBI-9016987|ensemblbacteria:AAS94886 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759969 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136 ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 rigid:SQ1PqtvvBDqV1trnkkcP8Mc9QD8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F51 uniprotkb:Q72F52 intact:EBI-11759951|ensemblbacteria:AAS94847 intact:EBI-11759935|ensemblbacteria:AAS94846 psi-mi:q72f51_desvh(display_long)|uniprotkb:pabA(gene name)|psi-mi:pabA(display_short)|uniprotkb:DVU_0364(locus name) psi-mi:q72f52_desvh(display_long)|uniprotkb:pabB(gene name)|psi-mi:pabB(display_short)|uniprotkb:DVU_0363(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759962 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937671.1|refseq:YP_009588.1|interpro:IPR029062|interpro:IPR017926|ensemblbacteria:AAS94847(transcript)|ensemblbacteria:DVU_0364(gene)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0016740"(transferase activity)|interpro:IPR006221(Glutamine amidotransferase of anthranilate synthase) interpro:IPR005801(Anthranilate synthase component I and chorismate binding protein)|interpro:IPR019999|interpro:IPR015890(Chorismate binding, C-terminal)|ensemblbacteria:AAS94846(transcript)|ensemblbacteria:DVU_0363(gene)|go:"GO:0009058"(biosynthetic process) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:jY6ttnCpqy05GkwXE2Z+saV+CJs882 rogid:CVKynR8Sof0f0P3ktmYWwrgU1m0882 rigid:7a8T/kWkcl7nxZSuYz7BELv6mkM false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F52 uniprotkb:Q72FU8 intact:EBI-11759935|ensemblbacteria:AAS94846 intact:EBI-11759918|ensemblbacteria:AAS94599 psi-mi:q72f52_desvh(display_long)|uniprotkb:pabB(gene name)|psi-mi:pabB(display_short)|uniprotkb:DVU_0363(locus name) psi-mi:q72fu8_desvh(display_long)|uniprotkb:aroE(gene name)|psi-mi:aroE(display_short)|uniprotkb:DVU_0115(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759944 author score:0.694 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005801(Anthranilate synthase component I and chorismate binding protein)|interpro:IPR019999|interpro:IPR015890(Chorismate binding, C-terminal)|ensemblbacteria:AAS94846(transcript)|ensemblbacteria:DVU_0363(gene)|go:"GO:0009058"(biosynthetic process) refseq:WP_010937426.1|refseq:YP_009340.1|interpro:IPR011342(Quinate/shikimate 5-dehydrogenase)|interpro:IPR013708(Shikimate dehydrogenase substrate binding, N-terminal)|interpro:IPR022893|interpro:IPR006151(Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase)|ensemblbacteria:AAS94599(transcript)|ensemblbacteria:DVU_0115(gene)|go:"GO:0004764"("shikimate 3-dehydrogenase (NADP+) activity")|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0019632"(shikimate metabolic process)|go:"GO:0050661"(NADP binding)|interpro:IPR041121|interpro:IPR036291 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:CVKynR8Sof0f0P3ktmYWwrgU1m0882 rogid:4/RrN7nxK98Wyi55g9U1ks4/Cag882 rigid:rdmt11KFiIw0Zah08HoKV5cETkU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F71 uniprotkb:Q72F72 intact:EBI-10071736|ensemblbacteria:AAS94826 intact:EBI-11759901|ensemblbacteria:AAS94825 psi-mi:q72f71_desvh(display_long)|uniprotkb:DVU_0343(locus name) psi-mi:q72f72_desvh(display_long)|uniprotkb:DVU_0342(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759911 author score:0.505 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005000(HpcH/HpaI aldolase)|interpro:IPR015813(Pyruvate/Phosphoenolpyruvate kinase, catalytic core)|refseq:YP_009567.1|refseq:WP_010937650.1|ensemblbacteria:AAS94826(transcript)|ensemblbacteria:DVU_0343(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR040442 refseq:WP_010937649.1|refseq:YP_009566.1|interpro:IPR001509(NAD-dependent epimerase/dehydratase)|ensemblbacteria:AAS94825(transcript)|ensemblbacteria:DVU_0342(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR036291 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:CZ1W4c4uvL8Y9SbNXSUYS0z6P2o882 rogid:g6bDmqv3wqb7ILr/7tO+tGOqo88882 rigid:sOHWIOAseXx5Oe8MqsO1Sy7ajlY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F88 uniprotkb:Q72F89 intact:EBI-10088412|ensemblbacteria:AAS94809 intact:EBI-10068092|ensemblbacteria:AAS94808 psi-mi:q72f88_desvh(display_long)|uniprotkb:DVU_0326(locus name)|uniprotkb:hypE(gene name)|psi-mi:hypE(display_short) psi-mi:q72f89_desvh(display_long)|uniprotkb:DVU_0325(locus name)|uniprotkb:hypD(gene name)|psi-mi:hypD(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11759894 author score:0.99 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010918(AIR synthase related protein, C-terminal)|interpro:IPR011854(Hydrogenase expression/formation protein HypE)|interpro:IPR016188(PurM, N-terminal-like)|rcsb pdb:2Z1T|rcsb pdb:2Z1U|refseq:YP_009550.1|refseq:WP_010937633.1|ensemblbacteria:AAS94809(transcript)|ensemblbacteria:DVU_0326(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036676|interpro:IPR036921 interpro:IPR002780(Hydrogenase formation HypD protein)|refseq:YP_009549.1|refseq:WP_010937632.1|ensemblbacteria:AAS94808(transcript)|ensemblbacteria:DVU_0325(gene)|go:"GO:0046872"(metal ion binding)|interpro:IPR042243|interpro:IPR042244 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:p980NC3Iaue+21RLGV2vj+8YKAM882 rogid:1a0X/rE8bnCMqYTDpcVesfb+F2w882 rigid:OyoSU8/WkMq1DCIvCfE/HkSzj/E false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DN8 uniprotkb:Q72DN9 intact:EBI-10087709|ensemblbacteria:AAS95371 intact:EBI-11760394|ensemblbacteria:AAS95370 psi-mi:q72dn8_desvh(display_long)|uniprotkb:DVU_0891(locus name) psi-mi:q72dn9_desvh(display_long)|uniprotkb:hom(gene name)|psi-mi:hom(display_short)|uniprotkb:DVU_0890(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760413 author score:0.543 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_010112.1|refseq:WP_010938190.1|ensemblbacteria:AAS95371(transcript)|ensemblbacteria:DVU_0891(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding) refseq:WP_010938189.1|refseq:YP_010111.1|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR005106(Aspartate/homoserine dehydrogenase, NAD-binding)|interpro:IPR016204(Homoserine dehydrogenase)|interpro:IPR001342(Homoserine dehydrogenase, catalytic)|interpro:IPR019811|ensemblbacteria:AAS95370(transcript)|ensemblbacteria:DVU_0890(gene)|go:"GO:0004412"(homoserine dehydrogenase activity)|go:"GO:0009086"(methionine biosynthetic process)|go:"GO:0009088"(threonine biosynthetic process)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0050661"(NADP binding)|interpro:IPR036291 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:w2S2MRSGsipunb/zk1q0Qm1ZDDs882 rogid:LZRxWNu8tIGkjtrwsK/Fr+BE5bA882 rigid:rYztVKdZCrSsRvXRcFzepbl4UXw false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DQ6 uniprotkb:Q72DR0 intact:EBI-10089708|ensemblbacteria:AAS95353 intact:EBI-11760377|ensemblbacteria:AAS95349 psi-mi:efts_desvh(display_long)|uniprotkb:DVU_0873(locus name)|uniprotkb:tsf(gene name)|psi-mi:tsf(display_short) psi-mi:q72dr0_desvh(display_long)|uniprotkb:uppS(gene name)|psi-mi:uppS(display_short)|uniprotkb:DVU_0869(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760387 author score:0.857 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001816(Translation elongation factor EFTs/EF1B)|interpro:IPR009060(UBA-like)|interpro:IPR014039(Translation elongation factor EFTs/EF1B, dimerisation)|interpro:IPR018101|refseq:YP_010094.1|refseq:WP_010938172.1|ensemblbacteria:AAS95353(transcript)|ensemblbacteria:DVU_0873(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036402 refseq:WP_010938168.1|refseq:YP_010090.1|interpro:IPR001441(Di-trans-poly-cis-decaprenylcistransferase)|ensemblbacteria:AAS95349(transcript)|ensemblbacteria:DVU_0869(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004659"(prenyltransferase activity)|interpro:IPR036424 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Tie/iQR38odopnxnAA7OFDzElCg882 rogid:yaTB2s0rolkzVbR8lyLhQAN47gg882 rigid:Ro+rg5wiIwMfO58eEgcw0M9vtLg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS2 uniprotkb:Q72DS5 intact:EBI-10069393|ensemblbacteria:AAS95337 intact:EBI-10070029|ensemblbacteria:AAS95334 psi-mi:q72ds2_desvh(display_long)|uniprotkb:DVU_0857(locus name) psi-mi:ahba_desvh(display_long)|uniprotkb:DVU_0854(locus name)|uniprotkb:ahbA(gene name)|psi-mi:ahbA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760370 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR023885|refseq:YP_010078.1|interpro:IPR030894|refseq:WP_010938157.1|ensemblbacteria:AAS95337(transcript)|ensemblbacteria:DVU_0857(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034479|interpro:IPR017200(Coenzyme PQQ biosynthesis protein E) interpro:IPR000485(Transcription regulator, AsnC/Lrp)|refseq:YP_010075.1|refseq:WP_010938154.1|ensemblbacteria:AAS95334(transcript)|ensemblbacteria:DVU_0854(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016829"(lyase activity)|go:"GO:0043565"(sequence-specific DNA binding)|interpro:IPR040523|interpro:IPR036388|interpro:IPR036390 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:g+y+xJ7Wd0gLKuQHBvSJDQ1tDow882 rogid:qaiFlK+73tflzG6JkOBnw818l2E882 rigid:cBwyChSc5m3uXD3ucBBwpWRONUQ false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS2 uniprotkb:Q72DS4 intact:EBI-10069393|ensemblbacteria:AAS95337 intact:EBI-11760348|ensemblbacteria:AAS95335 psi-mi:q72ds2_desvh(display_long)|uniprotkb:DVU_0857(locus name) psi-mi:ahbd_desvh(display_long)|uniprotkb:ahbD(gene name)|psi-mi:ahbD(display_short)|uniprotkb:DVU_0855(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760363 author score:0.709 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR023885|refseq:YP_010078.1|interpro:IPR030894|refseq:WP_010938157.1|ensemblbacteria:AAS95337(transcript)|ensemblbacteria:DVU_0857(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034479|interpro:IPR017200(Coenzyme PQQ biosynthesis protein E) refseq:YP_010076.1|interpro:IPR023885|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR030896|ensemblbacteria:AAS95335(transcript)|ensemblbacteria:DVU_0855(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034391|interpro:IPR017200(Coenzyme PQQ biosynthesis protein E) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:g+y+xJ7Wd0gLKuQHBvSJDQ1tDow882 rogid:erfwyDVFNhstzuFcBEeLF7srg4k882 rigid:kSSbJypLUCF4gwK5YIgTRODe32E false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS3 uniprotkb:Q72E45 intact:EBI-10090593|ensemblbacteria:AAS95336 intact:EBI-11760325|ensemblbacteria:AAS95214 psi-mi:q72ds3_desvh(display_long)|uniprotkb:Porphobilinogen synthase(gene name synonym)|uniprotkb:DVU_0856(locus name)|uniprotkb:hemB(gene name)|psi-mi:hemB(display_short) psi-mi:q72e45_desvh(display_long)|uniprotkb:Uroporphyrinogen-III C-methyltransferase(gene name synonym)|uniprotkb:DVU_0734(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760341 author score:0.725 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001731(Tetrapyrrole biosynthesis, porphobilinogen synthase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_010077.1|refseq:WP_010938156.1|ensemblbacteria:AAS95336(transcript)|ensemblbacteria:DVU_0856(gene)|go:"GO:0004655"(porphobilinogen synthase activity)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0046872"(metal ion binding) interpro:IPR000878(Tetrapyrrole methylase)|interpro:IPR003754(Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)|interpro:IPR014777(Tetrapyrrole methylase, subdomain 1)|interpro:IPR014776(Tetrapyrrole methylase, subdomain 2)|interpro:IPR006366(Uroporphyrin-III C-methyltransferase, C-terminal)|interpro:IPR003043(Uroporphiryn-III C-methyltransferase, conserved site)|refseq:WP_010938035.1|refseq:YP_009955.1|ensemblbacteria:AAS95214(transcript)|ensemblbacteria:DVU_0734(gene)|go:"GO:0004851"(uroporphyrin-III C-methyltransferase activity)|go:"GO:0004852"(uroporphyrinogen-III synthase activity)|go:"GO:0019354"(siroheme biosynthetic process)|go:"GO:0032259"(methylation)|interpro:IPR035996|interpro:IPR036108 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:35P4mJnlMzL1NgU/GnDo/eYWMmk882 rogid:KCprz+JEB3MllI7ProDOCaAXQBY882 rigid:oOhe1Q3b/Q4JQ2R99ed0hZLTNJ0 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS8 uniprotkb:Q72DT0 intact:EBI-10070308|ensemblbacteria:AAS95331 intact:EBI-10070311|ensemblbacteria:AAS95329 psi-mi:q72ds8_desvh(display_long)|uniprotkb:DVU_0851(locus name) psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760318 author score:0.815 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010072.1|refseq:WP_010938151.1|ensemblbacteria:DVU_0851(gene)|ensemblbacteria:AAS95331(transcript) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:E+DnBDT+UKmTb3MFm/r+lc56m9Y882 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rigid:ldt4rTmojKXeGVaqw5JCLvHV13E false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:P45574 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760311 author score:0.595 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188 ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 rigid:B+izHPi1kM3LGYsR5w/24eAk3W4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:Q72DT2 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-11760290|ensemblbacteria:AAS95327 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q72dt2_desvh(display_long)|uniprotkb:aprA(gene name)|psi-mi:aprA(display_short)|uniprotkb:DVU_0847(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760304 author score:0.981 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188 refseq:WP_010938147.1|refseq:YP_010068.1|interpro:IPR011803(Adenylylsulphate reductase, alpha subunit)|interpro:IPR003953(Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal)|interpro:IPR027477|ensemblbacteria:AAS95327(transcript)|ensemblbacteria:DVU_0847(gene)|go:"GO:0009973"(adenylyl-sulfate reductase activity)|interpro:IPR036188|interpro:IPR037099|interpro:IPR011280(Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:KCXE18lawkNKHpY4CH+OxCRwiQU882 rigid:qN+wxpIaqINRc1Zn6ua9c/bb/+E false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:Q72FS0 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-11760276|ensemblbacteria:AAS94627 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q72fs0_desvh(display_long)|uniprotkb:DVU_0143(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760283 author score:0.824 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188 refseq:WP_010937454.1|refseq:YP_009368.1|interpro:IPR005358(Protein of unknown function UPF0153)|ensemblbacteria:AAS94627(transcript)|ensemblbacteria:DVU_0143(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:MU6HgD9wiV0rgDezMMIB/5vesos882 rigid:GNLxxAR8wVgpvOfuthRywtWvadg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:Q72DT1 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-10068244|ensemblbacteria:AAS95328 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q72dt1_desvh(display_long)|uniprotkb:DVU_0848(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760269 author score:0.93 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188 refseq:YP_010069.1|refseq:WP_010938148.1|ensemblbacteria:AAS95328(transcript)|ensemblbacteria:DVU_0848(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR023753|interpro:IPR036188|interpro:IPR039650 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:8fJEeFdsNociGk3VqQ6Jvr/Q4gs882 rigid:m4kKQ9yqUBO++FQvFVkceOMdNvI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E01 uniprotkb:Q72E04 intact:EBI-10089570|ensemblbacteria:AAS95258 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:atpd_desvh(display_long)|uniprotkb:atpH(gene name)|psi-mi:atpH(display_short)|uniprotkb:"ATP synthase F(1) sector subunit delta"(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:DVU_0778(locus name) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760262 author score:0.5 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR020781|interpro:IPR026015|refseq:YP_009999.1|refseq:WP_010938079.1|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|ensemblbacteria:AAS95258(transcript)|ensemblbacteria:DVU_0778(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)") interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:APC9KRGIwvOyavhDbY/gm+447W0882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 rigid:9r4CV3e46QNR+mcNi1FN5DYpYEA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E01 uniprotkb:Q72E02 intact:EBI-10089570|ensemblbacteria:AAS95258 intact:EBI-10070589|ensemblbacteria:AAS95257 psi-mi:atpd_desvh(display_long)|uniprotkb:atpH(gene name)|psi-mi:atpH(display_short)|uniprotkb:"ATP synthase F(1) sector subunit delta"(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:DVU_0778(locus name) psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760255 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR020781|interpro:IPR026015|refseq:YP_009999.1|refseq:WP_010938079.1|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|ensemblbacteria:AAS95258(transcript)|ensemblbacteria:DVU_0778(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)") interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:APC9KRGIwvOyavhDbY/gm+447W0882 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 rigid:w+3y6rVdmE4M+6YYTnQPNpVcJk4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E01 uniprotkb:Q72E03 intact:EBI-10089570|ensemblbacteria:AAS95258 intact:EBI-10070593|ensemblbacteria:AAS95256 psi-mi:atpd_desvh(display_long)|uniprotkb:atpH(gene name)|psi-mi:atpH(display_short)|uniprotkb:"ATP synthase F(1) sector subunit delta"(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:DVU_0778(locus name) psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760248 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR020781|interpro:IPR026015|refseq:YP_009999.1|refseq:WP_010938079.1|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|ensemblbacteria:AAS95258(transcript)|ensemblbacteria:DVU_0778(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)") interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:APC9KRGIwvOyavhDbY/gm+447W0882 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 rigid:2HpDedIWpltshaA0geQk1agcYL4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E02 uniprotkb:Q72E04 intact:EBI-10070589|ensemblbacteria:AAS95257 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760241 author score:0.94 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121 interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 rigid:0cWmtoYDi3HfgRzA0g88Mg15+0E false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E02 uniprotkb:Q72E03 intact:EBI-10070589|ensemblbacteria:AAS95257 intact:EBI-10070593|ensemblbacteria:AAS95256 psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760234 author score:0.91 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121 interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 rigid:Nnp8w6x51FBGPG6AP8fRRFU91oY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E03 uniprotkb:Q72E04 intact:EBI-10070593|ensemblbacteria:AAS95256 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760227 author score:0.99 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968 interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 rigid:6dsfMdpayDGveI9ll6p8ppSaQBU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EB3 uniprotkb:Q72EB4 intact:EBI-10070871|ensemblbacteria:AAS95146 intact:EBI-10067158|ensemblbacteria:AAS95145 psi-mi:q72eb3_desvh(display_long)|uniprotkb:DVU_0665(locus name) psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760220 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041854|interpro:IPR034904|interpro:IPR001075(NIF system FeS cluster assembly, NifU, C-terminal)|interpro:IPR002871(NIF system FeS cluster assembly, NifU, N-terminal)|interpro:IPR007419(BFD-like [2Fe-2S]-binding region)|interpro:IPR010238(NIF system FeS cluster assembly, NifU)|interpro:IPR016217(Nitrogen fixation, NifU)|refseq:YP_009887.1|refseq:WP_010937968.1|ensemblbacteria:AAS95146(transcript)|ensemblbacteria:DVU_0665(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009399"(nitrogen fixation)|go:"GO:0016226"(iron-sulfur cluster assembly)|go:"GO:0051536"(iron-sulfur cluster binding) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:CxKzcSdGmA+3Xsei74XQM2yBE2E882 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 rigid:GdkA6sChMx2m4rxrENS5ElL+OJM false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EB4 uniprotkb:Q72FP0 intact:EBI-10067158|ensemblbacteria:AAS95145 intact:EBI-10071733|ensemblbacteria:AAS94657 psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:q72fp0_desvh(display_long)|uniprotkb:DVU_0173(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760213 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) refseq:WP_010937484.1|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_009398.1|ensemblbacteria:AAS94657(transcript)|ensemblbacteria:DVU_0173(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 rogid:HOWDlzWfMJqA2qohHsZrDe3Oqqk882 rigid:qc4CJSDMKugNdnX69aW5JnI+yAE false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EF1 uniprotkb:Q72EF2 intact:EBI-10070958|ensemblbacteria:AAS95108 intact:EBI-10070962|ensemblbacteria:AAS95107 psi-mi:q72ef1_desvh(display_long)|uniprotkb:DVU_0627(locus name)|uniprotkb:ptB(gene name)|psi-mi:ptB(display_short) psi-mi:q72ef2_desvh(display_long)|uniprotkb:DVU_0626(locus name)|uniprotkb:ilvN-1(gene name)|psi-mi:ilvN-1(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760206 author score:0.849 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR012147(Phosphate acetyl/butyryltransferase)|refseq:YP_009849.1|refseq:WP_010937930.1|ensemblbacteria:AAS95108(transcript)|ensemblbacteria:DVU_0627(gene)|go:"GO:0050182"(phosphate butyryltransferase activity) interpro:IPR027271|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR004789(Acetolactate synthase, small subunit)|interpro:IPR019455|refseq:YP_009848.1|refseq:WP_010937929.1|ensemblbacteria:AAS95107(transcript)|ensemblbacteria:DVU_0626(gene)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:1990610"(acetolactate synthase regulator activity)|interpro:IPR039557 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:oRRqj3WQRWyE/OrD35tQi/Cs9eQ882 rogid:hTBmiwTFmRnSE8eK3TG3YKPbq3I882 rigid:e5aDqz/2PXqW4qnhx6tS8HMpURw false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EH1 uniprotkb:Q72EH2 intact:EBI-11760185|ensemblbacteria:AAS95088 intact:EBI-11760171|ensemblbacteria:AAS95087 psi-mi:sahh_desvh(display_long)|uniprotkb:ahcY(gene name)|psi-mi:ahcY(display_short)|uniprotkb:S-adenosyl-L-homocysteine hydrolase(gene name synonym)|uniprotkb:DVU_0607(locus name) psi-mi:q72eh2_desvh(display_long)|uniprotkb:DVU_0606(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760199 author score:0.714 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937910.1|refseq:YP_009829.1|interpro:IPR000043(S-adenosyl-L-homocysteine hydrolase)|interpro:IPR015878(S-adenosyl-L-homocysteine hydrolase, NAD binding)|interpro:IPR020082|interpro:IPR042172|ensemblbacteria:AAS95088(transcript)|ensemblbacteria:DVU_0607(gene)|go:"GO:0004013"(adenosylhomocysteinase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006730"(one-carbon metabolic process)|interpro:IPR036291 refseq:WP_010937909.1|refseq:YP_009828.1|interpro:IPR001845(Bacterial regulatory protein, ArsR)|interpro:IPR013216(Methyltransferase type 11)|interpro:IPR029063|interpro:IPR011991(Winged helix repressor DNA-binding)|ensemblbacteria:AAS95087(transcript)|ensemblbacteria:DVU_0606(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR036388|interpro:IPR036390 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Z4isXyFU3Ae0eHAKxBQCSVfJ5ks882 rogid:FIUEHW40g/pQQIPbHVoTcuQ/weY882 rigid:samGBVUR39h/bERj538jaYbLQPk false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EI9 uniprotkb:Q72EJ9 intact:EBI-11760152|ensemblbacteria:AAS95070 intact:EBI-11760137|ensemblbacteria:AAS95060 psi-mi:q72ei9_desvh(display_long)|uniprotkb:DVU_0589(locus name) psi-mi:q72ej9_desvh(display_long)|uniprotkb:mobA(gene name)|psi-mi:mobA(display_short)|uniprotkb:"GTP:molybdopterin guanylyltransferase"(gene name synonym)|uniprotkb:Mo-MPT guanylyltransferase(gene name synonym)|uniprotkb:Molybdopterin guanylyltransferase(gene name synonym)|uniprotkb:Molybdopterin-guanine dinucleotide synthase(gene name synonym)|uniprotkb:DVU_0579(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760164 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009811.1|interpro:IPR007202(Putative Fe-S cluster)|interpro:IPR004435(Molybdopterin-guanine dinucleotide biosynthesis MobB region)|interpro:IPR027417|ensemblbacteria:AAS95070(transcript)|ensemblbacteria:DVU_0589(gene)|go:"GO:0005525"(GTP binding)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937892.1 refseq:WP_010937882.1|refseq:YP_009801.1|interpro:IPR025877|interpro:IPR013482(Molybdopterin-guanine dinucleotide biosynthesis protein A)|interpro:IPR029044|ensemblbacteria:AAS95060(transcript)|ensemblbacteria:DVU_0579(gene)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0061603"(molybdenum cofactor guanylyltransferase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:jNHEjb5IQjRis9ktDPmXitH8H+8882 rogid:qTF/bHt5Boaf+eOQe1kDGrLSULY882 rigid:cknaSZP5tJy5s6tTCKf/hDGIg+M false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EQ0 uniprotkb:Q72EQ1 intact:EBI-11760116|ensemblbacteria:AAS95001 intact:EBI-11760108|ensemblbacteria:AAS95000 psi-mi:q72eq0_desvh(display_long)|uniprotkb:DVU_0519(locus name) psi-mi:q72eq1_desvh(display_long)|uniprotkb:DVU_0518(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760130 author score:0.534 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR019776|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR002371(Flagellar hook-associated protein)|refseq:WP_010937825.1|refseq:YP_009742.1|ensemblbacteria:AAS95001(transcript)|ensemblbacteria:DVU_0519(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009424"(bacterial-type flagellum hook)|go:"GO:0044780"(bacterial-type flagellum assembly) interpro:IPR007809(FlgN)|refseq:WP_010937824.1|refseq:YP_009741.1|ensemblbacteria:AAS95000(transcript)|ensemblbacteria:DVU_0518(gene)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR036679 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:VEGruKV6m7YmiPTk1GT7OX3Z+Uk882 rogid:9N1xGSpoD+mHAPxm830tRDNOv5Y882 rigid:L4Ez3c0cJgx4HEbMSK7aCMgBR04 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EU7 uniprotkb:Q72EV7 intact:EBI-10071399|ensemblbacteria:AAS94954 intact:EBI-10091224|ensemblbacteria:AAS94944 psi-mi:trpa_desvh(display_long)|uniprotkb:DVU_0471(locus name)|uniprotkb:trpA(gene name)|psi-mi:trpA(display_short) psi-mi:q72ev7_desvh(display_long)|uniprotkb:DVU_0461(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760101 author score:0.499 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002028(Tryptophan synthase, alpha chain)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR018204|refseq:YP_009695.1|refseq:WP_010937778.1|ensemblbacteria:AAS94954(transcript)|ensemblbacteria:DVU_0471(gene)|go:"GO:0004834"(tryptophan synthase activity) interpro:IPR002812(3-dehydroquinate synthase, prokaryotic-type)|refseq:YP_009685.1|refseq:WP_010937768.1|ensemblbacteria:AAS94944(transcript)|ensemblbacteria:DVU_0461(gene)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016491"(oxidoreductase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:/nGrZtsjZuKHECdaoQPXZu7Wc0E882 rogid:mwofksyiY4DfvShUI1oibskQqkI882 rigid:lAfVtNU+U1pWB4VRTha6deEzl/Q false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EU7 uniprotkb:Q72EU8 intact:EBI-10071399|ensemblbacteria:AAS94954 intact:EBI-10071392|ensemblbacteria:AAS94953 psi-mi:trpa_desvh(display_long)|uniprotkb:DVU_0471(locus name)|uniprotkb:trpA(gene name)|psi-mi:trpA(display_short) psi-mi:q72eu8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0470(locus name)|uniprotkb:trpB-2(gene name)|psi-mi:trpB-2(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760094 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002028(Tryptophan synthase, alpha chain)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR018204|refseq:YP_009695.1|refseq:WP_010937778.1|ensemblbacteria:AAS94954(transcript)|ensemblbacteria:DVU_0471(gene)|go:"GO:0004834"(tryptophan synthase activity) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009694.1|refseq:WP_010937777.1|ensemblbacteria:AAS94953(transcript)|ensemblbacteria:DVU_0470(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:/nGrZtsjZuKHECdaoQPXZu7Wc0E882 rogid:g/enmCvxQAXl3YhQAd4uEJWnxY0882 rigid:9zp1izyerPdVL4t/vNfjUd68xdg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EU7 uniprotkb:Q72EV3 intact:EBI-10071399|ensemblbacteria:AAS94954 intact:EBI-10071430|ensemblbacteria:AAS94948 psi-mi:trpa_desvh(display_long)|uniprotkb:DVU_0471(locus name)|uniprotkb:trpA(gene name)|psi-mi:trpA(display_short) psi-mi:q72ev3_desvh(display_long)|uniprotkb:DVU_0465(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760087 author score:0.99 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002028(Tryptophan synthase, alpha chain)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR018204|refseq:YP_009695.1|refseq:WP_010937778.1|ensemblbacteria:AAS94954(transcript)|ensemblbacteria:DVU_0471(gene)|go:"GO:0004834"(tryptophan synthase activity) refseq:WP_010937772.1|interpro:IPR005801(Anthranilate synthase component I and chorismate binding protein)|interpro:IPR006805(Anthranilate synthase component I, N-terminal)|interpro:IPR015890(Chorismate binding, C-terminal)|interpro:IPR019999|refseq:YP_009689.1|ensemblbacteria:AAS94948(transcript)|ensemblbacteria:DVU_0465(gene)|go:"GO:0009058"(biosynthetic process) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:/nGrZtsjZuKHECdaoQPXZu7Wc0E882 rogid:jsErEG9dxouMNJRysnV/sU5s3kU882 rigid:FeuCpSLnZmB2cjElenfTGo3skCg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EU7 uniprotkb:Q72FX8 intact:EBI-10071399|ensemblbacteria:AAS94954 intact:EBI-10072062|ensemblbacteria:AAS94569 psi-mi:trpa_desvh(display_long)|uniprotkb:DVU_0471(locus name)|uniprotkb:trpA(gene name)|psi-mi:trpA(display_short) psi-mi:q72fx8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0085(locus name)|uniprotkb:trpB-1(gene name)|psi-mi:trpB-1(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760080 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002028(Tryptophan synthase, alpha chain)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR018204|refseq:YP_009695.1|refseq:WP_010937778.1|ensemblbacteria:AAS94954(transcript)|ensemblbacteria:DVU_0471(gene)|go:"GO:0004834"(tryptophan synthase activity) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009310.1|refseq:WP_010937396.1|ensemblbacteria:AAS94569(transcript)|ensemblbacteria:DVU_0085(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:/nGrZtsjZuKHECdaoQPXZu7Wc0E882 rogid:QG1JuXc3xiLvoPiZ3+VpXwTyp8o882 rigid:E/A3DjH++CaqA8HNRISmViZmXd8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EU9 uniprotkb:Q72EV0 intact:EBI-11760060|ensemblbacteria:AAS94952 intact:EBI-10071140|ensemblbacteria:AAS94951 psi-mi:q72eu9_desvh(display_long)|uniprotkb:trpF-1(gene name)|psi-mi:trpF-1(display_short)|uniprotkb:trpF(gene name synonym)|uniprotkb:DVU_0469(locus name) psi-mi:q72ev0_desvh(display_long)|uniprotkb:DVU_0468(locus name)|uniprotkb:trpC(gene name)|psi-mi:trpC(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760073 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009693.1|interpro:IPR001240("N-(5'phosphoribosyl)anthranilate isomerase (PRAI)")|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR044643|ensemblbacteria:AAS94952(transcript)|ensemblbacteria:DVU_0469(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004640"(phosphoribosylanthranilate isomerase activity) refseq:WP_010937775.1|interpro:IPR001468(Indole-3-glycerol phosphate synthase, central region)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|refseq:YP_009692.1|ensemblbacteria:AAS94951(transcript)|ensemblbacteria:DVU_0468(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:EtZeLRn7ThrO7rJ2mZsQZuD4iiY882 rogid:5pzSTXRUajEFmQznXEvuOW7nihs882 rigid:QOTFNXtWdjiopWHCbFimQt2C3ck false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV2 uniprotkb:Q72EV3 intact:EBI-11760040|ensemblbacteria:AAS94949 intact:EBI-10071430|ensemblbacteria:AAS94948 psi-mi:q72ev2_desvh(display_long)|uniprotkb:trpG(gene name)|psi-mi:trpG(display_short)|uniprotkb:DVU_0466(locus name) psi-mi:q72ev3_desvh(display_long)|uniprotkb:DVU_0465(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760053 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937773.1|refseq:YP_009690.1|interpro:IPR029062|interpro:IPR017926|interpro:IPR006221(Glutamine amidotransferase of anthranilate synthase)|ensemblbacteria:AAS94949(transcript)|ensemblbacteria:DVU_0466(gene)|go:"GO:0004049"(anthranilate synthase activity)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0016740"(transferase activity) refseq:WP_010937772.1|interpro:IPR005801(Anthranilate synthase component I and chorismate binding protein)|interpro:IPR006805(Anthranilate synthase component I, N-terminal)|interpro:IPR015890(Chorismate binding, C-terminal)|interpro:IPR019999|refseq:YP_009689.1|ensemblbacteria:AAS94948(transcript)|ensemblbacteria:DVU_0465(gene)|go:"GO:0009058"(biosynthetic process) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:0BmWvcX07xq8mMR4TOKxkRT/gx8882 rogid:jsErEG9dxouMNJRysnV/sU5s3kU882 rigid:jTlnC1Eu7iJP0aYNjQgg9aZyUPc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DK5 uniprotkb:Q72EB5 intact:EBI-11760458|ensemblbacteria:AAS95404 intact:EBI-10089549|ensemblbacteria:AAS95144 psi-mi:y924_desvh(display_long)|uniprotkb:DVU_0924(locus name) psi-mi:q72eb5_desvh(display_long)|uniprotkb:cysK(gene name)|psi-mi:cysK(display_short)|uniprotkb:DVU_0663(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760476 author score:0.49 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938223.1|refseq:YP_010145.1|interpro:IPR030390|interpro:IPR030391|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR029063|interpro:IPR002792(Deoxyribonuclease/rho motif-related TRAM)|interpro:IPR010280("(Uracil-5)-methyltransferase")|ensemblbacteria:AAS95404(transcript)|ensemblbacteria:DVU_0924(gene)|go:"GO:0006396"(RNA processing)|go:"GO:0008173"(RNA methyltransferase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding) interpro:IPR001216(Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site)|interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR005856(Cysteine synthase K/M)|interpro:IPR005859(Cysteine synthase A)|refseq:WP_010937966.1|refseq:YP_009885.1|ensemblbacteria:AAS95144(transcript)|ensemblbacteria:DVU_0663(gene)|go:"GO:0004124"(cysteine synthase activity)|go:"GO:0006535"(cysteine biosynthetic process from serine)|interpro:IPR036052 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:+yZF3eDKPl4doQttSsAIR7xJQvk882 rogid:9q1f/v85pdu//RCxN9LYoRcaPPE882 rigid:BCRHnxsJkddvUjqV3D32SX4Mt5A false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DL9 uniprotkb:Q72G17 intact:EBI-10070265|ensemblbacteria:AAS95390 intact:EBI-10070272|ensemblbacteria:AAS94530 psi-mi:q72dl9_desvh(display_long)|uniprotkb:DVU_0910(locus name)|uniprotkb:fliM(gene name)|psi-mi:fliM(display_short) psi-mi:q72g17_desvh(display_long)|uniprotkb:DVU_0046(locus name)|uniprotkb:fliN(gene name)|psi-mi:fliN(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760451 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR001689(Flagellar motor switch protein FliM)|interpro:IPR028976|refseq:YP_010131.1|refseq:WP_010938209.1|ensemblbacteria:AAS95390(transcript)|ensemblbacteria:DVU_0910(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR036429 interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|refseq:YP_009271.1|refseq:WP_010937357.1|ensemblbacteria:AAS94530(transcript)|ensemblbacteria:DVU_0046(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0016020"(membrane)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR036429 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:zBURU8Qi05Sx5HEDdVEsLoB+BZU882 rogid:7svK9NXlE+9UxjIwzx2C9uSIdPg882 rigid:LUkGnn4BYx0fOenF2G6SWq+5hxk false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DM7 uniprotkb:Q72DM8 intact:EBI-11760435|ensemblbacteria:AAS95382 intact:EBI-11760420|ensemblbacteria:AAS95381 psi-mi:q72dm7_desvh(display_long)|uniprotkb:DVU_0902(locus name) psi-mi:pyrf_desvh(display_long)|uniprotkb:DVU_0901(locus name)|uniprotkb:OMP decarboxylase(gene name synonym)|uniprotkb:pyrF(gene name)|psi-mi:pyrF(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760444 author score:0.611 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938201.1|refseq:YP_010123.1|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|ensemblbacteria:AAS95382(transcript)|ensemblbacteria:DVU_0902(gene) refseq:WP_010938200.1|refseq:YP_010122.1|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR014732(Orotidine 5'-phosphate decarboxylase, subfamily 1, core)|interpro:IPR018089|interpro:IPR001754(Orotidine 5'-phosphate decarboxylase, core)|interpro:IPR011060(Ribulose-phosphate binding barrel)|ensemblbacteria:AAS95381(transcript)|ensemblbacteria:DVU_0901(gene)|go:"GO:0004590"(orotidine-5'-phosphate decarboxylase activity)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:TrtFxA0cr8+PIFTAUa6zNECU8MI882 rogid:lD355KjOgNUXnJS9IszoWQHQTQg882 rigid:b0x7PGUa2OYD3GS0f3Ok0w2gZ7c false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA0 uniprotkb:P62450 intact:EBI-10068791|ensemblbacteria:AAS95509 intact:EBI-10064978|ensemblbacteria:AAS94769 psi-mi:his8_desvh(display_long)|uniprotkb:Imidazole acetol-phosphate transaminase(gene name synonym)|uniprotkb:DVU_1029(locus name)|uniprotkb:hisC(gene name)|psi-mi:hisC(display_short) psi-mi:his6_desvh(display_long)|uniprotkb:IGP synthase cyclase subunit(gene name synonym)|uniprotkb:IGP synthase subunit HisF(gene name synonym)|uniprotkb:ImGP synthase subunit HisF(gene name synonym)|uniprotkb:DVU_0286(locus name)|uniprotkb:hisF(gene name)|psi-mi:hisF(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760550 author score:0.496 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001917(Aminotransferase, class-II, pyridoxal-phosphate binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR005861(Histidinol-phosphate aminotransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_010250.1|refseq:WP_010938328.1|ensemblbacteria:AAS95509(transcript)|ensemblbacteria:DVU_1029(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0004400"(histidinol-phosphate transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding) interpro:IPR004651(Histidine biosynthesis, HisF)|interpro:IPR006062(Histidine biosynthesis)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009510.1|refseq:WP_010937595.1|ensemblbacteria:AAS94769(transcript)|ensemblbacteria:DVU_0286(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0000107"(imidazoleglycerol-phosphate synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0016829"(lyase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:H14oWaNYwas/HBMZFA+aT/uTER4882 rogid:4xHW6/vARu+RwFf9UnBK9t2kzpI882 rigid:xXkVpdwP1HKOoq1yFrC5JpCr+t8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA1 uniprotkb:Q72EV5 intact:EBI-10068720|ensemblbacteria:AAS95508 intact:EBI-10065482|ensemblbacteria:AAS94946 psi-mi:kcy_desvh(display_long)|uniprotkb:Cytidine monophosphate kinase(gene name synonym)|uniprotkb:DVU_1028(locus name)|uniprotkb:cmk(gene name)|psi-mi:cmk(display_short) psi-mi:q72ev5_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate synthase(gene name synonym)|uniprotkb:DVU_0463(locus name)|uniprotkb:aroA(gene name)|psi-mi:aroA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760543 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938327.1|interpro:IPR003136(Cytidylate kinase)|interpro:IPR011994(Cytidylate kinase region)|interpro:IPR027417|refseq:YP_010249.1|ensemblbacteria:AAS95508(transcript)|ensemblbacteria:DVU_1028(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006220"(pyrimidine nucleotide metabolic process)|go:"GO:0036430"(CMP kinase activity)|go:"GO:0036431"(dCMP kinase activity) interpro:IPR001986(3-phosphoshikimate 1-carboxyvinyltransferase, core)|interpro:IPR006264(3-phosphoshikimate 1-carboxyvinyltransferase, subgroup)|interpro:IPR013792(RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)|refseq:WP_010937770.1|refseq:YP_009687.1|ensemblbacteria:AAS94946(transcript)|ensemblbacteria:DVU_0463(gene)|go:"GO:0003866"(3-phosphoshikimate 1-carboxyvinyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR036968 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:ClS/sOrefmGxSmfBt++7bwK30OQ882 rogid:wTgIPqX9LPxWksya/Ts48V+an18882 rigid:+Bmx90iNrGUB7a62/vkMiZD+96E false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DH7 uniprotkb:Q72DH8 intact:EBI-10089470|ensemblbacteria:AAS95432 intact:EBI-10070167|ensemblbacteria:AAS95431 psi-mi:q72dh7_desvh(display_long)|uniprotkb:DVU_0952(locus name) psi-mi:q72dh8_desvh(display_long)|uniprotkb:DVU_0951(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760536 author score:0.487 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005235(Conserved hypothetical protein CHP00282)|interpro:IPR029052|refseq:YP_010173.1|refseq:WP_010938251.1|ensemblbacteria:AAS95432(transcript)|ensemblbacteria:DVU_0952(gene)|go:"GO:0046872"(metal ion binding) interpro:IPR038987|interpro:IPR001453(Molybdopterin binding)|interpro:IPR005110(MoeA, N-terminal, domain I and II)|interpro:IPR005111(MoeA, C-terminal, domain IV)|refseq:YP_010172.1|refseq:WP_010938250.1|ensemblbacteria:AAS95431(transcript)|ensemblbacteria:DVU_0951(gene)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0032324"(molybdopterin cofactor biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0061599"(molybdopterin molybdotransferase activity)|interpro:IPR036135|interpro:IPR036425|interpro:IPR036688 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:atgn/L7NN4xNICzmtISeHHpXpJg882 rogid:jfLOJBXgGRfEVSuZy4qxSuhUr88882 rigid:6R8R0aAXw+Xr7zFulADrzc6n5QY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EI9 uniprotkb:Q72DH8 intact:EBI-11760152|ensemblbacteria:AAS95070 intact:EBI-10070167|ensemblbacteria:AAS95431 psi-mi:q72ei9_desvh(display_long)|uniprotkb:DVU_0589(locus name) psi-mi:q72dh8_desvh(display_long)|uniprotkb:DVU_0951(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760529 author score:0.777 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009811.1|interpro:IPR007202(Putative Fe-S cluster)|interpro:IPR004435(Molybdopterin-guanine dinucleotide biosynthesis MobB region)|interpro:IPR027417|ensemblbacteria:AAS95070(transcript)|ensemblbacteria:DVU_0589(gene)|go:"GO:0005525"(GTP binding)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937892.1 interpro:IPR038987|interpro:IPR001453(Molybdopterin binding)|interpro:IPR005110(MoeA, N-terminal, domain I and II)|interpro:IPR005111(MoeA, C-terminal, domain IV)|refseq:YP_010172.1|refseq:WP_010938250.1|ensemblbacteria:AAS95431(transcript)|ensemblbacteria:DVU_0951(gene)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0032324"(molybdopterin cofactor biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0061599"(molybdopterin molybdotransferase activity)|interpro:IPR036135|interpro:IPR036425|interpro:IPR036688 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:jNHEjb5IQjRis9ktDPmXitH8H+8882 rogid:jfLOJBXgGRfEVSuZy4qxSuhUr88882 rigid:iMe/BnaZsRTAsuVwaue0DfxzPPs false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D35 uniprotkb:Q72FQ1 intact:EBI-11760594|ensemblbacteria:AAS95576 intact:EBI-10065635|ensemblbacteria:AAS94646 psi-mi:otc_desvh(display_long)|uniprotkb:argF(gene name)|psi-mi:argF(display_short)|uniprotkb:DVU_1096(locus name) psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760610 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938395.1|refseq:YP_010317.1|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR002292(Ornithine carbamoyltransferase)|interpro:IPR024904|ensemblbacteria:AAS95576(transcript)|ensemblbacteria:DVU_1096(gene)|go:"GO:0004585"(ornithine carbamoyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0016597"(amino acid binding)|interpro:IPR036901 interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:hDIOvVaaovjE5ETteUYCdI3jfJY882 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 rigid:aXG4IGE4JwxRD9BFUMaeNC/6kqY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P61522 uniprotkb:Q72FQ1 intact:EBI-11760571|ensemblbacteria:AAS95575 intact:EBI-10065635|ensemblbacteria:AAS94646 psi-mi:assy_desvh(display_long)|uniprotkb:Citrulline--aspartate ligase(gene name synonym)|uniprotkb:DVU_1095(locus name)|uniprotkb:argG(gene name)|psi-mi:argG(display_short) psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760587 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938394.1|refseq:YP_010316.1|interpro:IPR001518(Argininosuccinate synthase)|interpro:IPR018223|interpro:IPR023434|interpro:IPR024074|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|ensemblbacteria:AAS95575(transcript)|ensemblbacteria:DVU_1095(gene)|go:"GO:0004055"(argininosuccinate synthase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006526"(arginine biosynthetic process) interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:KPYoBRLOW/OUjr7k2Rt/22eO/hs882 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 rigid:PdCQFfbBBm0JRPb4FqFKHqO7m4I false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D42 uniprotkb:Q72D43 intact:EBI-10069744|ensemblbacteria:AAS95568 intact:EBI-10069738|ensemblbacteria:AAS95567 psi-mi:q72d42_desvh(display_long)|uniprotkb:DVU_1088(locus name) psi-mi:q72d43_desvh(display_long)|uniprotkb:DVU_1087(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760564 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010309.1|ensemblbacteria:AAS95568(transcript)|ensemblbacteria:DVU_1088(gene) interpro:IPR002882(Protein of unknown function UPF0052 and CofD)|interpro:IPR027591|refseq:YP_010308.1|ensemblbacteria:AAS95567(transcript)|ensemblbacteria:DVU_1087(gene)|go:"GO:0043743"("LPPG:FO 2-phospho-L-lactate transferase activity") - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:jwg3nrcFmmhBWaZ8QqdpmxAmYEo882 rogid:gE5MPWWXKfdBpm1Fy3WRz6a7sC4882 rigid:mhlGr9/hOZCasRO3By2pGRCrPig false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D85 uniprotkb:Q72D86 intact:EBI-10064794|ensemblbacteria:AAS95524 intact:EBI-10089853|ensemblbacteria:AAS95523 psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:guaa_desvh(display_long)|uniprotkb:GMP synthetase(gene name synonym)|uniprotkb:Glutamine amidotransferase(gene name synonym)|uniprotkb:DVU_1043(locus name)|uniprotkb:guaA(gene name)|psi-mi:guaA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760557 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding) interpro:IPR022310|interpro:IPR001674(GMP synthase, C-terminal)|interpro:IPR004739(GMP synthase, N-terminal)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR017926|interpro:IPR022955|interpro:IPR025777|interpro:IPR029062|refseq:YP_010264.1|refseq:WP_010938342.1|ensemblbacteria:AAS95523(transcript)|ensemblbacteria:DVU_1043(gene)|go:"GO:0003922"("GMP synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0016462"(pyrophosphatase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 rogid:X3/RckqU2py4hBDbXDehupdXnzs882 rigid:Xc0Rc8x9bSH+KXffH+vygNPHCgE false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CK0 uniprotkb:Q72CK1 intact:EBI-10069053|ensemblbacteria:AAS95761 intact:EBI-11760692|ensemblbacteria:AAS95760 psi-mi:q72ck0_desvh(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:DVU_1283(locus name)|uniprotkb:galU(gene name)|psi-mi:galU(display_short) psi-mi:glmm_desvh(display_long)|uniprotkb:glmM(gene name)|psi-mi:glmM(display_short)|uniprotkb:DVU_1282(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760724 author score:0.913 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR029044|refseq:YP_010502.1|ensemblbacteria:AAS95761(transcript)|ensemblbacteria:DVU_1283(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process) refseq:WP_010938578.1|refseq:YP_010501.1|interpro:IPR005844(Alpha-D-phosphohexomutase, alpha/beta/alpha domain I)|interpro:IPR016055(Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III)|interpro:IPR005845(Alpha-D-phosphohexomutase, alpha/beta/alpha domain II)|interpro:IPR005846(Alpha-D-phosphohexomutase, alpha/beta/alpha domain III)|interpro:IPR005843(Alpha-D-phosphohexomutase, C-terminal)|interpro:IPR016066(Alpha-D-phosphohexomutase, conserved site)|interpro:IPR005841(Alpha-D-phosphohexomutase, N-terminal)|interpro:IPR006352(Phosphoglucosamine mutase)|ensemblbacteria:AAS95760(transcript)|ensemblbacteria:DVU_1282(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0008966"(phosphoglucosamine mutase activity)|interpro:IPR036900 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:d6iZYQ9JPNw37P78x10YDxMTefo882 rogid:WTOG/g0uvQSnNfPFTCZ5ARFE1YU882 rigid:D9e2MYKRzieD8OXfjRfwV7RyTXQ false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CK1 uniprotkb:Q72E81 intact:EBI-11760692|ensemblbacteria:AAS95760 intact:EBI-10070783|ensemblbacteria:AAS95178 psi-mi:glmm_desvh(display_long)|uniprotkb:glmM(gene name)|psi-mi:glmM(display_short)|uniprotkb:DVU_1282(locus name) psi-mi:q72e81_desvh(display_long)|uniprotkb:DVU_0697(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760717 author score:0.939 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938578.1|refseq:YP_010501.1|interpro:IPR005844(Alpha-D-phosphohexomutase, alpha/beta/alpha domain I)|interpro:IPR016055(Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III)|interpro:IPR005845(Alpha-D-phosphohexomutase, alpha/beta/alpha domain II)|interpro:IPR005846(Alpha-D-phosphohexomutase, alpha/beta/alpha domain III)|interpro:IPR005843(Alpha-D-phosphohexomutase, C-terminal)|interpro:IPR016066(Alpha-D-phosphohexomutase, conserved site)|interpro:IPR005841(Alpha-D-phosphohexomutase, N-terminal)|interpro:IPR006352(Phosphoglucosamine mutase)|ensemblbacteria:AAS95760(transcript)|ensemblbacteria:DVU_1282(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0008966"(phosphoglucosamine mutase activity)|interpro:IPR036900 interpro:IPR001538(Mannose-6-phosphate isomerase, type II, C-terminal)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR006375(Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase)|interpro:IPR011051(Cupin, RmlC-type)|interpro:IPR014710(RmlC-like jelly roll fold)|interpro:IPR029044|refseq:YP_009919.1|refseq:WP_010937999.1|ensemblbacteria:AAS95178(transcript)|ensemblbacteria:DVU_0697(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0004475"(mannose-1-phosphate guanylyltransferase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0016853"(isomerase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:WTOG/g0uvQSnNfPFTCZ5ARFE1YU882 rogid:JlWqcLs0KhiVS9Nk/6grCg+uFRs882 rigid:QkW0KRV2QaZ1dzZxeoixrhBfJLs false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CK1 uniprotkb:Q72CK4 intact:EBI-11760692|ensemblbacteria:AAS95760 intact:EBI-11760678|ensemblbacteria:AAS95757 psi-mi:glmm_desvh(display_long)|uniprotkb:glmM(gene name)|psi-mi:glmM(display_short)|uniprotkb:DVU_1282(locus name) psi-mi:q72ck4_desvh(display_long)|uniprotkb:Dihydropteroate pyrophosphorylase(gene name synonym)|uniprotkb:DVU_1279(locus name)|uniprotkb:folP(gene name)|psi-mi:folP(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760710 author score:0.468 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938578.1|refseq:YP_010501.1|interpro:IPR005844(Alpha-D-phosphohexomutase, alpha/beta/alpha domain I)|interpro:IPR016055(Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III)|interpro:IPR005845(Alpha-D-phosphohexomutase, alpha/beta/alpha domain II)|interpro:IPR005846(Alpha-D-phosphohexomutase, alpha/beta/alpha domain III)|interpro:IPR005843(Alpha-D-phosphohexomutase, C-terminal)|interpro:IPR016066(Alpha-D-phosphohexomutase, conserved site)|interpro:IPR005841(Alpha-D-phosphohexomutase, N-terminal)|interpro:IPR006352(Phosphoglucosamine mutase)|ensemblbacteria:AAS95760(transcript)|ensemblbacteria:DVU_1282(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0008966"(phosphoglucosamine mutase activity)|interpro:IPR036900 refseq:WP_010938575.1|refseq:YP_010498.1|interpro:IPR006390(Dihydropteroate synthase)|interpro:IPR011005(Dihydropteroate synthase-like)|interpro:IPR000489(Dihydropteroate synthase, DHPS)|ensemblbacteria:AAS95757(transcript)|ensemblbacteria:DVU_1279(gene)|go:"GO:0004156"(dihydropteroate synthase activity)|go:"GO:0046654"(tetrahydrofolate biosynthetic process)|go:"GO:0046656"(folic acid biosynthetic process)|go:"GO:0046872"(metal ion binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:WTOG/g0uvQSnNfPFTCZ5ARFE1YU882 rogid:osdFo/StmuqbBQL+/lsZccElSuQ882 rigid:CfGirPEVrcHmi840BWUToObJ6Oc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CS9 uniprotkb:Q72CT7 intact:EBI-10069619|ensemblbacteria:AAS95682 intact:EBI-11760636|ensemblbacteria:AAS95674 psi-mi:q72cs9_desvh(display_long)|uniprotkb:DVU_1204(locus name)|uniprotkb:fabF(gene name)|psi-mi:fabF(display_short) psi-mi:syl_desvh(display_long)|uniprotkb:Leucyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_1196(locus name)|uniprotkb:leuS(gene name)|psi-mi:leuS(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760671 author score:0.642 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR020841|interpro:IPR000794(Beta-ketoacyl synthase)|interpro:IPR014030(Beta-ketoacyl synthase, N-terminal)|interpro:IPR014031(Beta-ketoacyl synthase, C-terminal)|interpro:IPR016039(Thiolase-like)|interpro:IPR017568(3-oxoacyl-[acyl-carrier-protein] synthase 2)|interpro:IPR018201|refseq:YP_010423.1|refseq:WP_010938500.1|ensemblbacteria:AAS95682(transcript)|ensemblbacteria:DVU_1204(gene)|go:"GO:0004315"(3-oxoacyl-[acyl-carrier-protein] synthase activity)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0033817" interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|refseq:WP_010938492.1|refseq:YP_010415.1|interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002302(Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial)|interpro:IPR025709|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|ensemblbacteria:AAS95674(transcript)|ensemblbacteria:DVU_1196(gene)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004823"(leucine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006429"(leucyl-tRNA aminoacylation) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:mq+nfhNJdNQ1WG1VkFX3dqSw/Ic882 rogid:IzJcWu2R8WaRFQpL2Ay+H/AJ+0E882 rigid:0Js5o5czHz4dTgJ0nRp8ksNryEE false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CS9 uniprotkb:Q72CT0 intact:EBI-10069619|ensemblbacteria:AAS95682 intact:EBI-10065973|ensemblbacteria:AAS95681 psi-mi:q72cs9_desvh(display_long)|uniprotkb:DVU_1204(locus name)|uniprotkb:fabF(gene name)|psi-mi:fabF(display_short) psi-mi:glya_desvh(display_long)|uniprotkb:DVU_1203(locus name)|uniprotkb:glyA(gene name)|psi-mi:glyA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760664 author score:0.492 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR020841|interpro:IPR000794(Beta-ketoacyl synthase)|interpro:IPR014030(Beta-ketoacyl synthase, N-terminal)|interpro:IPR014031(Beta-ketoacyl synthase, C-terminal)|interpro:IPR016039(Thiolase-like)|interpro:IPR017568(3-oxoacyl-[acyl-carrier-protein] synthase 2)|interpro:IPR018201|refseq:YP_010423.1|refseq:WP_010938500.1|ensemblbacteria:AAS95682(transcript)|ensemblbacteria:DVU_1204(gene)|go:"GO:0004315"(3-oxoacyl-[acyl-carrier-protein] synthase activity)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0033817" interpro:IPR001085(Glycine hydroxymethyltransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR019798|refseq:YP_010422.1|refseq:WP_010938499.1|ensemblbacteria:AAS95681(transcript)|ensemblbacteria:DVU_1203(gene)|go:"GO:0004372"(glycine hydroxymethyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019264"(glycine biosynthetic process from serine)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0035999"(tetrahydrofolate interconversion)|interpro:IPR039429 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:mq+nfhNJdNQ1WG1VkFX3dqSw/Ic882 rogid:qvZABnUa4OAh0x1pR2kjrAk4Hrk882 rigid:jyfZmCdJC+bbx90Hg3PNwxGoaLY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CT7 uniprotkb:Q72G53 intact:EBI-11760636|ensemblbacteria:AAS95674 intact:EBI-11760617|ensemblbacteria:AAS94491 psi-mi:syl_desvh(display_long)|uniprotkb:Leucyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_1196(locus name)|uniprotkb:leuS(gene name)|psi-mi:leuS(display_short) psi-mi:syn_desvh(display_long)|uniprotkb:Asparaginyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_0007(locus name)|uniprotkb:asnS(gene name)|psi-mi:asnS(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760657 author score:0.607 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|refseq:WP_010938492.1|refseq:YP_010415.1|interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002302(Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial)|interpro:IPR025709|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|ensemblbacteria:AAS95674(transcript)|ensemblbacteria:DVU_1196(gene)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004823"(leucine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006429"(leucyl-tRNA aminoacylation) refseq:YP_009232.1|interpro:IPR004364("Aminoacyl-tRNA synthetase, class II (D, K and N)")|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR004522(Asparaginyl-tRNA synthetase, class IIb)|interpro:IPR002312(Aspartyl-tRNA synthetase, class IIb)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR004365(Nucleic acid binding, OB-fold, tRNA/helicase-type)|refseq:WP_010937318.1|ensemblbacteria:AAS94491(transcript)|ensemblbacteria:DVU_0007(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004816"(asparagine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006421"(asparaginyl-tRNA aminoacylation) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:IzJcWu2R8WaRFQpL2Ay+H/AJ+0E882 rogid:YgwJJsgKth7X0sr3xJBFkHjxEHY882 rigid:4HLxbEaTrOT+SKHBsNLtx7eWxUI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C59 uniprotkb:Q72C60 intact:EBI-10069291|ensemblbacteria:AAS95903 intact:EBI-10069287|ensemblbacteria:AAS95902 psi-mi:gcspa_desvh(display_long)|uniprotkb:Glycine cleavage system P-protein subunit 1(gene name synonym)|uniprotkb:Glycine decarboxylase subunit 1(gene name synonym)|uniprotkb:"Glycine dehydrogenase (aminomethyl-transferring) subunit 1"(gene name synonym)|uniprotkb:DVU_1425(locus name)|uniprotkb:gcvPA(gene name)|psi-mi:gcvPA(display_short) psi-mi:q72c60_desvh(display_long)|uniprotkb:DVU_1424(locus name)|uniprotkb:gcvPB(gene name)|psi-mi:gcvPB(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760840 author score:0.986 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020581|interpro:IPR023010|refseq:YP_010644.1|refseq:WP_010938718.1|ensemblbacteria:AAS95903(transcript)|ensemblbacteria:DVU_1425(gene)|go:"GO:0004375"("glycine dehydrogenase (decarboxylating) activity")|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019464"(glycine decarboxylation via glycine cleavage system)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2) interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020581|refseq:YP_010643.1|refseq:WP_010938717.1|ensemblbacteria:AAS95902(transcript)|ensemblbacteria:DVU_1424(gene)|go:"GO:0004375"("glycine dehydrogenase (decarboxylating) activity")|go:"GO:0006546"(glycine catabolic process)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:NN8JwphJrH9Gj80Pv1v9BaEc82Y882 rogid:tXkD34WrNn4zSKZodVuNrlw8S6E882 rigid:gBo3Vn7mNy47X489yyt4AlFfHwI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C78 uniprotkb:Q72ET0 intact:EBI-11760819|ensemblbacteria:AAS95884 intact:EBI-11760796|ensemblbacteria:AAS94971 psi-mi:q72c78_desvh(display_long)|uniprotkb:AIR synthase(gene name synonym)|uniprotkb:AIRS(gene name synonym)|uniprotkb:Phosphoribosyl-aminoimidazole synthetase(gene name synonym)|uniprotkb:DVU_1406(locus name)|uniprotkb:purM(gene name)|psi-mi:purM(display_short) psi-mi:q72et0_desvh(display_long)|uniprotkb:GARS(gene name synonym)|uniprotkb:Glycinamide ribonucleotide synthetase(gene name synonym)|uniprotkb:Phosphoribosylglycinamide synthetase(gene name synonym)|uniprotkb:DVU_0488(locus name)|uniprotkb:purD(gene name)|psi-mi:purD(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760833 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938699.1|refseq:YP_010625.1|interpro:IPR010918(AIR synthase related protein, C-terminal)|interpro:IPR016188(PurM, N-terminal-like)|interpro:IPR004733(Phosphoribosylformylglycinamidine cyclo-ligase)|ensemblbacteria:AAS95884(transcript)|ensemblbacteria:DVU_1406(gene)|go:"GO:0004641"(phosphoribosylformylglycinamidine cyclo-ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006189"('de novo' IMP biosynthetic process)|interpro:IPR036676|interpro:IPR036921 refseq:WP_010937795.1|refseq:YP_009712.1|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR020561|interpro:IPR000115(Phosphoribosylglycinamide synthetase)|interpro:IPR020560|interpro:IPR020559|interpro:IPR020562|ensemblbacteria:DVU_0488(gene)|go:"GO:0004637"(phosphoribosylamine-glycine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0009113"(purine nucleobase biosynthetic process)|go:"GO:0046872"(metal ion binding)|ensemblbacteria:AAS94971(transcript)|interpro:IPR037123 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:hCngAil0VkRNs46KvkH1BR1TArg882 rogid:TcIFu8HY2ct2JSTOFtvHog427PE882 rigid:nL+OO9kjO5hgYFOIdZYDMho1Apk false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CD9 uniprotkb:Q72G08 intact:EBI-10087615|ensemblbacteria:AAS95822 intact:EBI-10072158|ensemblbacteria:AAS94539 psi-mi:ispg_desvh(display_long)|uniprotkb:"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase"(gene name synonym)|uniprotkb:DVU_1344(locus name)|uniprotkb:ispG(gene name)|psi-mi:ispG(display_short) psi-mi:isph_desvh(display_long)|uniprotkb:DVU_0055(locus name)|uniprotkb:ispH(gene name)|psi-mi:ispH(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760789 author score:0.644 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004588(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type)|interpro:IPR011005(Dihydropteroate synthase-like)|interpro:IPR016425(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial)|refseq:YP_010563.1|ensemblbacteria:AAS95822(transcript)|ensemblbacteria:DVU_1344(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046429"(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding) interpro:IPR003451(LytB protein)|refseq:YP_009280.1|refseq:WP_010937366.1|ensemblbacteria:AAS94539(transcript)|ensemblbacteria:DVU_0055(gene)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050992"(dimethylallyl diphosphate biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0051745"(4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:caynhpgg6DreuOCdNYjsh6v10RU882 rogid:ByPumi3wifO+Jw0OBXZG3SpnqEg882 rigid:TH/6jDn0J2+nI3R1158SBD9fGQU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE6 uniprotkb:Q72CE7 intact:EBI-10069535|ensemblbacteria:AAS95815 intact:EBI-10089155|ensemblbacteria:AAS95814 psi-mi:lon_desvh(display_long)|uniprotkb:ATP-dependent protease La(gene name synonym)|uniprotkb:DVU_1337(locus name)|uniprotkb:lon(gene name)|psi-mi:lon(display_short) psi-mi:clpx_desvh(display_long)|uniprotkb:clpX(gene name)|psi-mi:clpX(display_short)|uniprotkb:DVU_1336(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760782 author score:0.519 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003111(Peptidase S16, lon N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004815(Peptidase S16, ATP-dependent protease La)|interpro:IPR008268(Peptidase S16, active site)|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR015947(PUA-like)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|interpro:IPR027543|refseq:YP_010556.1|refseq:WP_010938632.1|ensemblbacteria:AAS95815(transcript)|ensemblbacteria:DVU_1337(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0034605"(cellular response to heat)|go:"GO:0043565"(sequence-specific DNA binding) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004487(ClpX, ATPase regulatory subunit)|interpro:IPR010603(Zinc finger, C4-type)|interpro:IPR019489|interpro:IPR027417|refseq:YP_010555.1|refseq:WP_010938631.1|ensemblbacteria:AAS95814(transcript)|ensemblbacteria:DVU_1336(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006457"(protein folding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0046983"(protein dimerization activity)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR038366 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:K+5mhLOOcEzqnf49msI210n9o+s882 rogid:mY7tQ2gySkCAoFvNfosszT4Zt5M882 rigid:ewXx0PJyEXk0JlT51kIn5BR8fJY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CI8 uniprotkb:Q72DT2 intact:EBI-11760754|ensemblbacteria:AAS95773 intact:EBI-11760290|ensemblbacteria:AAS95327 psi-mi:q72ci8_desvh(display_long)|uniprotkb:sat(gene name)|psi-mi:sat(display_short)|uniprotkb:DVU_1295(locus name) psi-mi:q72dt2_desvh(display_long)|uniprotkb:aprA(gene name)|psi-mi:aprA(display_short)|uniprotkb:DVU_0847(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760775 author score:0.958 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938590.1|refseq:YP_010514.1|interpro:IPR025980|interpro:IPR015947(PUA-like)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR024951|interpro:IPR002650(ATP-sulphurylase)|ensemblbacteria:AAS95773(transcript)|ensemblbacteria:DVU_1295(gene)|go:"GO:0000103"(sulfate assimilation)|go:"GO:0004781"("sulfate adenylyltransferase (ATP) activity")|go:"GO:0005524"(ATP binding) refseq:WP_010938147.1|refseq:YP_010068.1|interpro:IPR011803(Adenylylsulphate reductase, alpha subunit)|interpro:IPR003953(Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal)|interpro:IPR027477|ensemblbacteria:AAS95327(transcript)|ensemblbacteria:DVU_0847(gene)|go:"GO:0009973"(adenylyl-sulfate reductase activity)|interpro:IPR036188|interpro:IPR037099|interpro:IPR011280(Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:NadFlg06bcZBsH7luwDG012OKmM882 rogid:KCXE18lawkNKHpY4CH+OxCRwiQU882 rigid:NqtgbvQp7QUr2HJrGUadHvaCvEA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CI8 uniprotkb:Q72DT0 intact:EBI-11760754|ensemblbacteria:AAS95773 intact:EBI-10070311|ensemblbacteria:AAS95329 psi-mi:q72ci8_desvh(display_long)|uniprotkb:sat(gene name)|psi-mi:sat(display_short)|uniprotkb:DVU_1295(locus name) psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760768 author score:0.785 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938590.1|refseq:YP_010514.1|interpro:IPR025980|interpro:IPR015947(PUA-like)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR024951|interpro:IPR002650(ATP-sulphurylase)|ensemblbacteria:AAS95773(transcript)|ensemblbacteria:DVU_1295(gene)|go:"GO:0000103"(sulfate assimilation)|go:"GO:0004781"("sulfate adenylyltransferase (ATP) activity")|go:"GO:0005524"(ATP binding) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:NadFlg06bcZBsH7luwDG012OKmM882 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rigid:65GDSCotxbYquMKJ2+Iiv1cnHKA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CK0 uniprotkb:Q72E93 intact:EBI-10069053|ensemblbacteria:AAS95761 intact:EBI-11760731|ensemblbacteria:AAS95166 psi-mi:q72ck0_desvh(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:DVU_1283(locus name)|uniprotkb:galU(gene name)|psi-mi:galU(display_short) psi-mi:q72e93_desvh(display_long)|uniprotkb:DVU_0685(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760747 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR029044|refseq:YP_010502.1|ensemblbacteria:AAS95761(transcript)|ensemblbacteria:DVU_1283(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process) refseq:WP_010937988.1|refseq:YP_009907.1|interpro:IPR005844(Alpha-D-phosphohexomutase, alpha/beta/alpha domain I)|interpro:IPR016055(Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III)|interpro:IPR005845(Alpha-D-phosphohexomutase, alpha/beta/alpha domain II)|interpro:IPR005846(Alpha-D-phosphohexomutase, alpha/beta/alpha domain III)|interpro:IPR005843(Alpha-D-phosphohexomutase, C-terminal)|interpro:IPR016066(Alpha-D-phosphohexomutase, conserved site)|interpro:IPR005841(Alpha-D-phosphohexomutase, N-terminal)|ensemblbacteria:AAS95166(transcript)|ensemblbacteria:DVU_0685(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004615"(phosphomannomutase activity)|go:"GO:0005975"(carbohydrate metabolic process)|interpro:IPR036900 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:d6iZYQ9JPNw37P78x10YDxMTefo882 rogid:8hcpu5COmX+Gl4h9QTaJHVE7w78882 rigid:teyk4aSOpsq+wamGu37n6ZUEsLY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AZ8 uniprotkb:Q72AZ9 intact:EBI-11761007|ensemblbacteria:AAS96318 intact:EBI-10070789|ensemblbacteria:AAS96317 psi-mi:q72az8_desvh(display_long)|uniprotkb:DVU_1842(locus name) psi-mi:f16pa_desvh(display_long)|uniprotkb:D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1(gene name synonym)|uniprotkb:DVU_1841(locus name)|uniprotkb:fbp(gene name)|psi-mi:fbp(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761013 author score:0.474 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939128.1|refseq:YP_011059.1|ensemblbacteria:AAS96318(transcript)|ensemblbacteria:DVU_1842(gene) interpro:IPR033391|interpro:IPR000146(Inositol phosphatase/fructose-1,6-bisphosphatase)|interpro:IPR028343|refseq:YP_011058.1|refseq:WP_010939127.1|ensemblbacteria:AAS96317(transcript)|ensemblbacteria:DVU_1841(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|interpro:IPR044015 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:aFOUXti74MCR/+XrHU65drOtzLs882 rogid:M4TLbaLSH8QEk2PR+1+08HJmQoY882 rigid:OVw+jmTAiBlGy9ONvedpD/fV+as false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B00 uniprotkb:Q72DR5 intact:EBI-10068484|ensemblbacteria:AAS96316 intact:EBI-10068478|ensemblbacteria:AAS95344 psi-mi:tsad_desvh(display_long)|uniprotkb:N6-L-threonylcarbamoyladenine synthase(gene name synonym)|uniprotkb:gcp(gene name synonym)|uniprotkb:"t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD"(gene name synonym)|uniprotkb:tRNA threonylcarbamoyladenosine biosynthesis protein TsaD(gene name synonym)|uniprotkb:DVU_1840(locus name)|uniprotkb:tsaD(gene name)|psi-mi:tsaD(display_short) psi-mi:q72dr5_desvh(display_long)|uniprotkb:DVU_0864(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761000 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000905(Peptidase M22, glycoprotease)|interpro:IPR017860|interpro:IPR017861|interpro:IPR022450|refseq:YP_011057.1|refseq:WP_010939126.1|ensemblbacteria:AAS96316(transcript)|ensemblbacteria:DVU_1840(gene)|go:"GO:0002949"(tRNA threonylcarbamoyladenosine modification)|go:"GO:0005506"(iron ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0061711"("N(6)-L-threonylcarbamoyladenine synthase activity")|interpro:IPR043129 interpro:IPR000905(Peptidase M22, glycoprotease)|interpro:IPR022496|refseq:YP_010085.1|refseq:WP_010938163.1|ensemblbacteria:AAS95344(transcript)|ensemblbacteria:DVU_0864(gene)|go:"GO:0002949"(tRNA threonylcarbamoyladenosine modification)|go:"GO:0008233"(peptidase activity)|interpro:IPR043129 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:D0WWzs3UvatBRfi2m4zNX5zVwfc882 rogid:g2lFoirIYGplDml+E1YZ5TRZOwk882 rigid:1Hb6zfh/l8E+y/43A0Gpa6elbhA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B16 uniprotkb:Q72B18 intact:EBI-10068314|ensemblbacteria:AAS96300 intact:EBI-10068567|ensemblbacteria:AAS96298 psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760993 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 rigid:CGevNfnKzdjQiPr6roIU7Qp8pZw false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B16 uniprotkb:Q72B17 intact:EBI-10068314|ensemblbacteria:AAS96300 intact:EBI-10068561|ensemblbacteria:AAS96299 psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760986 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 rigid:bngz+qmi24xrapIUrjwMjBw0uBs false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B17 uniprotkb:Q72B18 intact:EBI-10068561|ensemblbacteria:AAS96299 intact:EBI-10068567|ensemblbacteria:AAS96298 psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760979 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 rigid:KdeNv0j2vIKa+gj7E6W5lzciVXI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BF9 uniprotkb:Q72BQ4 intact:EBI-10068771|ensemblbacteria:AAS96154 intact:EBI-11760947|ensemblbacteria:AAS96058 psi-mi:tpis_desvh(display_long)|uniprotkb:Triose-phosphate isomerase(gene name synonym)|uniprotkb:DVU_1677(locus name)|uniprotkb:tpiA(gene name)|psi-mi:tpiA(display_short) psi-mi:q72bq4_desvh(display_long)|uniprotkb:DVU_1580(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760972 author score:0.997 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000652(Triosephosphate isomerase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020861|interpro:IPR022896|refseq:YP_010895.1|refseq:WP_010938966.1|ensemblbacteria:AAS96154(transcript)|ensemblbacteria:DVU_1677(gene)|go:"GO:0004807"(triose-phosphate isomerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|interpro:IPR035990 refseq:WP_010938871.1|refseq:YP_010799.1|interpro:IPR004785(Ribose 5-phosphate isomerase B)|interpro:IPR003500(Ribose/galactose isomerase)|ensemblbacteria:AAS96058(transcript)|ensemblbacteria:DVU_1580(gene)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR036569 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:VrC0riNuKTTJq5PMjJty4QtwPqI882 rogid:YpnGz9nRE9HU5O97muYSeubqgUs882 rigid:nkOOQzUyviASJ6UNWuIBUFRCOOU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BQ4 uniprotkb:Q72CT0 intact:EBI-11760947|ensemblbacteria:AAS96058 intact:EBI-10065973|ensemblbacteria:AAS95681 psi-mi:q72bq4_desvh(display_long)|uniprotkb:DVU_1580(locus name) psi-mi:glya_desvh(display_long)|uniprotkb:DVU_1203(locus name)|uniprotkb:glyA(gene name)|psi-mi:glyA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760965 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938871.1|refseq:YP_010799.1|interpro:IPR004785(Ribose 5-phosphate isomerase B)|interpro:IPR003500(Ribose/galactose isomerase)|ensemblbacteria:AAS96058(transcript)|ensemblbacteria:DVU_1580(gene)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR036569 interpro:IPR001085(Glycine hydroxymethyltransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR019798|refseq:YP_010422.1|refseq:WP_010938499.1|ensemblbacteria:AAS95681(transcript)|ensemblbacteria:DVU_1203(gene)|go:"GO:0004372"(glycine hydroxymethyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019264"(glycine biosynthetic process from serine)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0035999"(tetrahydrofolate interconversion)|interpro:IPR039429 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:YpnGz9nRE9HU5O97muYSeubqgUs882 rogid:qvZABnUa4OAh0x1pR2kjrAk4Hrk882 rigid:1tAl+DHW2xR3n2zEkBveP1wvfUU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BQ4 uniprotkb:Q72DA4 intact:EBI-11760947|ensemblbacteria:AAS96058 intact:EBI-11760933|ensemblbacteria:AAS95505 psi-mi:q72bq4_desvh(display_long)|uniprotkb:DVU_1580(locus name) psi-mi:upp_desvh(display_long)|uniprotkb:UMP pyrophosphorylase(gene name synonym)|uniprotkb:UPRTase(gene name synonym)|uniprotkb:upp(gene name)|psi-mi:upp(display_short)|uniprotkb:DVU_1025(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760958 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938871.1|refseq:YP_010799.1|interpro:IPR004785(Ribose 5-phosphate isomerase B)|interpro:IPR003500(Ribose/galactose isomerase)|ensemblbacteria:AAS96058(transcript)|ensemblbacteria:DVU_1580(gene)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR036569 interpro:IPR034332|interpro:IPR029057|interpro:IPR005765(Uracil phosphoribosyl transferase)|refseq:WP_010938324.1|refseq:YP_010246.1|ensemblbacteria:AAS95505(transcript)|ensemblbacteria:DVU_1025(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004845"(uracil phosphoribosyltransferase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0006223"(uracil salvage)|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0044206"(UMP salvage)|interpro:IPR000836(Phosphoribosyltransferase) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:YpnGz9nRE9HU5O97muYSeubqgUs882 rogid:SLQL+E61mTgXJ5Bo6sjvNEO36Hw882 rigid:43GFXAI6JCFzeHoSvbunyjsDQno false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BR4 uniprotkb:Q72BR5 intact:EBI-10068994|ensemblbacteria:AAS96048 intact:EBI-10068990|ensemblbacteria:AAS96047 psi-mi:q72br4_desvh(display_long)|uniprotkb:DVU_1570(locus name)|uniprotkb:porB(gene name)|psi-mi:porB(display_short) psi-mi:q72br5_desvh(display_long)|uniprotkb:DVU_1569(locus name)|uniprotkb:porA(gene name)|psi-mi:porA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760926 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR011896("2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate")|interpro:IPR029061|refseq:YP_010789.1|refseq:WP_010938861.1|interpro:IPR032686|ensemblbacteria:AAS96048(transcript)|ensemblbacteria:DVU_1570(gene)|go:"GO:0019164"(pyruvate synthase activity)|go:"GO:0030976"(thiamine pyrophosphate binding) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR019752|interpro:IPR022367|interpro:IPR029061|refseq:YP_010788.1|refseq:WP_010938860.1|ensemblbacteria:AAS96047(transcript)|ensemblbacteria:DVU_1569(gene)|go:"GO:0019164"(pyruvate synthase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:KPsJE1oLOivI3xVRLE8dBiQIkvw882 rogid:NiPqIE+kT8bgxCOoK6KTDryJgXI882 rigid:3vcI/cUAmI7csHRmPU31JgoJFR8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BT9 uniprotkb:Q72DB7 intact:EBI-11760909|ensemblbacteria:AAS96023 intact:EBI-10070000|ensemblbacteria:AAS95492 psi-mi:q72bt9_desvh(display_long)|uniprotkb:DVU_1545(locus name) psi-mi:q72db7_desvh(display_long)|uniprotkb:DVU_1012(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760919 author score:0.464 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010764.1|interpro:IPR018511|interpro:IPR011049(Serralysin-like metalloprotease, C-terminal)|ensemblbacteria:AAS96023(transcript)|ensemblbacteria:DVU_1545(gene)|go:"GO:0005509"(calcium ion binding)|interpro:IPR038081|interpro:IPR001343(Haemolysin-type calcium-binding region) interpro:IPR002035(von Willebrand factor, type A)|interpro:IPR010221(VCBS)|interpro:IPR011049(Serralysin-like metalloprotease, C-terminal)|interpro:IPR018511|refseq:YP_010233.1|refseq:WP_010938311.1|ensemblbacteria:AAS95492(transcript)|ensemblbacteria:DVU_1012(gene)|go:"GO:0005509"(calcium ion binding)|interpro:IPR013783(Immunoglobulin-like fold)|interpro:IPR036465|interpro:IPR040853|interpro:IPR001343(Haemolysin-type calcium-binding region) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:nfsVAA54B81tMp6NYFbQiqlvkKs882 rogid:j6yzspWr15cOn9QM+H6gdlRLyPQ882 rigid:8Q7rHwOHwmqPF6c0lmc7MnPdx48 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C23 uniprotkb:Q72E45 intact:EBI-11760886|ensemblbacteria:AAS95939 intact:EBI-11760325|ensemblbacteria:AAS95214 psi-mi:hem1_desvh(display_long)|uniprotkb:hemA(gene name)|psi-mi:hemA(display_short)|uniprotkb:DVU_1461(locus name) psi-mi:q72e45_desvh(display_long)|uniprotkb:Uroporphyrinogen-III C-methyltransferase(gene name synonym)|uniprotkb:DVU_0734(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760902 author score:0.667 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938754.1|refseq:YP_010680.1|interpro:IPR000343(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase)|interpro:IPR015896(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal)|interpro:IPR015895(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal)|interpro:IPR018214|interpro:IPR006151(Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase)|ensemblbacteria:AAS95939(transcript)|ensemblbacteria:DVU_1461(gene)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008883"(glutamyl-tRNA reductase activity)|go:"GO:0050661"(NADP binding)|interpro:IPR036291|interpro:IPR036343|interpro:IPR036453 interpro:IPR000878(Tetrapyrrole methylase)|interpro:IPR003754(Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)|interpro:IPR014777(Tetrapyrrole methylase, subdomain 1)|interpro:IPR014776(Tetrapyrrole methylase, subdomain 2)|interpro:IPR006366(Uroporphyrin-III C-methyltransferase, C-terminal)|interpro:IPR003043(Uroporphiryn-III C-methyltransferase, conserved site)|refseq:WP_010938035.1|refseq:YP_009955.1|ensemblbacteria:AAS95214(transcript)|ensemblbacteria:DVU_0734(gene)|go:"GO:0004851"(uroporphyrin-III C-methyltransferase activity)|go:"GO:0004852"(uroporphyrinogen-III synthase activity)|go:"GO:0019354"(siroheme biosynthetic process)|go:"GO:0032259"(methylation)|interpro:IPR035996|interpro:IPR036108 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:iwbUXtNatoO9g2bZ16MEjE3BN/I882 rogid:KCprz+JEB3MllI7ProDOCaAXQBY882 rigid:Fhf4ibOgoXjlQHfVhfc8zcV0Uqw false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C30 uniprotkb:Q72DR3 intact:EBI-10069217|ensemblbacteria:AAS95932 intact:EBI-11760862|ensemblbacteria:AAS95346 psi-mi:ispdf_desvh(display_long)|uniprotkb:ispD(gene name synonym)|uniprotkb:DVU_1454(locus name)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short) psi-mi:dxr_desvh(display_long)|uniprotkb:1-deoxyxylulose-5-phosphate reductoisomerase(gene name synonym)|uniprotkb:2-C-methyl-D-erythritol 4-phosphate synthase(gene name synonym)|uniprotkb:DVU_0866(locus name)|uniprotkb:dxr(gene name)|psi-mi:dxr(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760879 author score:0.513 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|interpro:IPR029044|refseq:YP_010673.1|refseq:WP_010938747.1|ensemblbacteria:AAS95932(transcript)|ensemblbacteria:DVU_1454(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|interpro:IPR034683|interpro:IPR036571 refseq:YP_010087.1|refseq:WP_010938165.1|interpro:IPR003821(1-deoxy-D-xylulose 5-phosphate reductoisomerase)|interpro:IPR013644(1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal)|interpro:IPR013512(1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal)|interpro:IPR026877|ensemblbacteria:AAS95346(transcript)|ensemblbacteria:DVU_0866(gene)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0030604"(1-deoxy-D-xylulose-5-phosphate reductoisomerase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0070402"(NADPH binding)|interpro:IPR036169|interpro:IPR036291 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:09vx9flKicV2MNGXlhhB263lymE882 rogid:X4qIRz6sAz1dgW/GnK05XWBlBgU882 rigid:rrIB6S4oOFC9/52A3/lawN4uBCw false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C43 uniprotkb:Q72DR7 intact:EBI-10090056|ensemblbacteria:AAS95919 intact:EBI-11760847|ensemblbacteria:AAS95342 psi-mi:q72c43_desvh(display_long)|uniprotkb:DVU_1441(locus name) psi-mi:q72dr7_desvh(display_long)|uniprotkb:DVU_0862(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11760855 author score:0.517 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_010660.1|interpro:IPR042187|refseq:WP_010938734.1|ensemblbacteria:AAS95919(transcript)|ensemblbacteria:DVU_1441(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility) refseq:WP_010938161.1|refseq:YP_010083.1|interpro:IPR003713(Flagellar protein FliS)|ensemblbacteria:AAS95342(transcript)|ensemblbacteria:DVU_0862(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR036584 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:UCl1QnRslU8qgMo3h/QmxNPhMfs882 rogid:qUF0lKzCcstuED66FwrUXknajU8882 rigid:4g8io1PR4goY+9bXOmTqgy9yRmk false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AA3 uniprotkb:Q72AA4 intact:EBI-10067665|ensemblbacteria:AAS96567 intact:EBI-10067658|ensemblbacteria:AAS96566 psi-mi:q72aa3_desvh(display_long)|uniprotkb:DVU_2094(locus name)|uniprotkb:thiG(gene name)|psi-mi:thiG(display_short) psi-mi:q72aa4_desvh(display_long)|uniprotkb:DVU_2093(locus name)|uniprotkb:thiH(gene name)|psi-mi:thiH(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761171 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008867(Thiazole biosynthesis)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:WP_010939371.1|refseq:YP_011307.1|ensemblbacteria:AAS96567(transcript)|ensemblbacteria:DVU_2094(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:1990107"(thiazole synthase activity)|interpro:IPR033983 interpro:IPR010722(Biotin and thiamin synthesis associated)|interpro:IPR012726(Thiazole biosynthesis ThiH)|refseq:YP_011306.1|refseq:WP_010939370.1|ensemblbacteria:AAS96566(transcript)|ensemblbacteria:DVU_2093(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034428 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:nwI9TbvedKsctIY5UofhF0JPPl4882 rogid:wfS251/hAHdZ2zy6jozSvp8FKgc882 rigid:bmy/5OEs5uFtbjkpZH4RI82k3Qg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AA3 uniprotkb:Q72C73 intact:EBI-10067665|ensemblbacteria:AAS96567 intact:EBI-10087998|ensemblbacteria:AAS95889 psi-mi:q72aa3_desvh(display_long)|uniprotkb:DVU_2094(locus name)|uniprotkb:thiG(gene name)|psi-mi:thiG(display_short) psi-mi:q72c73_desvh(display_long)|uniprotkb:DVU_1411(locus name)|uniprotkb:thiC(gene name)|psi-mi:thiC(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761164 author score:0.972 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008867(Thiazole biosynthesis)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:WP_010939371.1|refseq:YP_011307.1|ensemblbacteria:AAS96567(transcript)|ensemblbacteria:DVU_2094(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:1990107"(thiazole synthase activity)|interpro:IPR033983 interpro:IPR002817(Thiamine biosynthesis protein ThiC)|refseq:YP_010630.1|refseq:WP_010938704.1|ensemblbacteria:AAS95889(transcript)|ensemblbacteria:DVU_1411(gene)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0016829"(lyase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR038521 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:nwI9TbvedKsctIY5UofhF0JPPl4882 rogid:AislqSLTTBJQfn2wam+sVAEOL1s882 rigid:OGfmRaivTTxfv1UzWrnjge9Si6k false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AA4 uniprotkb:Q72C73 intact:EBI-10067658|ensemblbacteria:AAS96566 intact:EBI-10087998|ensemblbacteria:AAS95889 psi-mi:q72aa4_desvh(display_long)|uniprotkb:DVU_2093(locus name)|uniprotkb:thiH(gene name)|psi-mi:thiH(display_short) psi-mi:q72c73_desvh(display_long)|uniprotkb:DVU_1411(locus name)|uniprotkb:thiC(gene name)|psi-mi:thiC(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761157 author score:0.951 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010722(Biotin and thiamin synthesis associated)|interpro:IPR012726(Thiazole biosynthesis ThiH)|refseq:YP_011306.1|refseq:WP_010939370.1|ensemblbacteria:AAS96566(transcript)|ensemblbacteria:DVU_2093(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034428 interpro:IPR002817(Thiamine biosynthesis protein ThiC)|refseq:YP_010630.1|refseq:WP_010938704.1|ensemblbacteria:AAS95889(transcript)|ensemblbacteria:DVU_1411(gene)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0016829"(lyase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR038521 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:wfS251/hAHdZ2zy6jozSvp8FKgc882 rogid:AislqSLTTBJQfn2wam+sVAEOL1s882 rigid:rPJ9sdlQZ5FJfm97x5rCP2aRDSY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AB5 uniprotkb:Q72EP7 intact:EBI-10071272|ensemblbacteria:AAS96555 intact:EBI-10067084|ensemblbacteria:AAS95004 psi-mi:q72ab5_desvh(display_long)|uniprotkb:DVU_2082(locus name) psi-mi:fliw_desvh(display_long)|uniprotkb:DVU_0522(locus name)|uniprotkb:fliW(gene name)|psi-mi:fliW(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761150 author score:0.611 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011295.1|refseq:WP_010939359.1|ensemblbacteria:AAS96555(transcript)|ensemblbacteria:DVU_2082(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187 interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|refseq:YP_009745.1|refseq:WP_010937828.1|ensemblbacteria:AAS95004(transcript)|ensemblbacteria:DVU_0522(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:9Qv+5NMFmhdNFWdT0bYugLJEInA882 rogid:c5C5ClnCJ+W3GJvhTC/v7zqusRE882 rigid:Gbo4lJvvdHZ5sVaW6/AP9s2IxmA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AD4 uniprotkb:Q72AD5 intact:EBI-11761136|ensemblbacteria:AAS96536 intact:EBI-11761122|ensemblbacteria:AAS96535 psi-mi:q72ad4_desvh(display_long)|uniprotkb:DVU_2063(locus name) psi-mi:q72ad5_desvh(display_long)|uniprotkb:DVU_2062(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761143 author score:0.999 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939341.1|refseq:YP_011276.1|interpro:IPR027417|ensemblbacteria:AAS96536(transcript)|ensemblbacteria:DVU_2063(gene)|interpro:IPR038726 refseq:WP_010939340.1|refseq:YP_011275.1|interpro:IPR014017(DNA helicase, UvrD-like, C terminal)|interpro:IPR000212(DNA helicase, UvrD/REP type)|interpro:IPR027417|interpro:IPR014016(Helicase, superfamily 1, UvrD-related)|ensemblbacteria:AAS96535(transcript)|ensemblbacteria:DVU_2062(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0140603"(obsolete ATP hydrolysis activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:H2e9y3wnf3yovgkK7bi+72Hjdlw882 rogid:SOzefuaMmu88GgVh4JQ3ybuhW4s882 rigid:2AI8CI5aIB6wsGsvqgmAonTOrfk false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AE2 uniprotkb:Q72ES5 intact:EBI-10067762|ensemblbacteria:AAS96528 intact:EBI-10087949|ensemblbacteria:AAS94976 psi-mi:q72ae2_desvh(display_long)|uniprotkb:metG(gene name)|psi-mi:metG(display_short)|uniprotkb:Methionyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2055(locus name) psi-mi:q72es5_desvh(display_long)|uniprotkb:DVU_0494(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761115 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041872|interpro:IPR033911|interpro:IPR002547(tRNA-binding region)|interpro:IPR004495(Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR014758(Methionyl-tRNA synthetase, class Ia, N-terminal)|interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|interpro:IPR023457|refseq:WP_010939333.1|refseq:YP_011268.1|interpro:IPR032678|ensemblbacteria:AAS96528(transcript)|ensemblbacteria:DVU_2055(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004825"(methionine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006431"(methionyl-tRNA aminoacylation)|go:"GO:0046872"(metal ion binding) interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020578|interpro:IPR024169|refseq:YP_009717.1|refseq:WP_010937800.1|ensemblbacteria:AAS94976(transcript)|ensemblbacteria:DVU_0494(gene)|go:"GO:0008483"(transaminase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:h1kUEOwSshrNiJpCu6I400O/Ay0882 rogid:SqYmSI/1aehXmns52M32WUK8MEA882 rigid:kVSJJx0p4HgIS2tdJtID2ChO5GA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AP1 uniprotkb:Q72AP2 intact:EBI-10067921|ensemblbacteria:AAS96427 intact:EBI-10067915|ensemblbacteria:AAS96426 psi-mi:q72ap1_desvh(display_long)|uniprotkb:Indolepyruvate ferredoxin oxidoreductase subunit alpha(gene name synonym)|uniprotkb:DVU_1951(locus name) psi-mi:q72ap2_desvh(display_long)|uniprotkb:DVU_1950(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761108 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR017721(Indolepyruvate ferredoxin oxidoreductase, alpha subunit)|interpro:IPR029061|refseq:WP_010939237.1|refseq:YP_011168.1|ensemblbacteria:AAS96427(transcript)|ensemblbacteria:DVU_1951(gene)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0043805"(indolepyruvate ferredoxin oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_011167.1|refseq:WP_010939236.1|ensemblbacteria:AAS96426(transcript)|ensemblbacteria:DVU_1950(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:lUDGwTlHt7ECY7zmUCEGEf7kBNc882 rogid:XIFvbMdm9uLfPz0ytgOCBaOkzXI882 rigid:bYw5rMpZYYcAJaehzFHvpTWDxpA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AQ2 uniprotkb:Q72AQ3 intact:EBI-10067970|ensemblbacteria:AAS96416 intact:EBI-10067964|ensemblbacteria:AAS96415 psi-mi:q72aq2_desvh(display_long)|uniprotkb:DVU_1940(locus name) psi-mi:q72aq3_desvh(display_long)|uniprotkb:DVU_1939(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761101 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041854|interpro:IPR000447(FAD-dependent glycerol-3-phosphate dehydrogenase)|interpro:IPR006076(FAD dependent oxidoreductase)|interpro:IPR017752(Anaerobic glycerol-3-phosphate dehydrogenase, A subunit)|refseq:YP_011157.1|refseq:WP_010939226.1|ensemblbacteria:AAS96416(transcript)|ensemblbacteria:DVU_1940(gene)|go:"GO:0004368"("glycerol-3-phosphate dehydrogenase (quinone) activity")|go:"GO:0005886"(plasma membrane)|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0009331"(glycerol-3-phosphate dehydrogenase complex)|go:"GO:0010181"(FMN binding)|go:"GO:0046174"(polyol catabolic process)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188 interpro:IPR003953(Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal)|interpro:IPR009158(Anaerobic glycerol-3-phosphate dehydrogenase, subunit B)|refseq:WP_010939225.1|refseq:YP_011156.1|ensemblbacteria:AAS96415(transcript)|ensemblbacteria:DVU_1939(gene)|go:"GO:0004368"("glycerol-3-phosphate dehydrogenase (quinone) activity")|interpro:IPR036188 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:8qrPawzvsaA35hPIEHBjH51pbtA882 rogid:vwQc/Cox2C7ShF0sPx/UqNuunyw882 rigid:Lp6RrcomEPJgMxkmR+t1YBK1aLg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR8 uniprotkb:Q72F89 intact:EBI-10068099|ensemblbacteria:AAS96400 intact:EBI-10068092|ensemblbacteria:AAS94808 psi-mi:q72ar8_desvh(display_long)|uniprotkb:DVU_1924(locus name)|uniprotkb:hypC(gene name)|psi-mi:hypC(display_short) psi-mi:q72f89_desvh(display_long)|uniprotkb:DVU_0325(locus name)|uniprotkb:hypD(gene name)|psi-mi:hypD(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761094 author score:0.941 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001109("Hydrogenase expression/formation protein (HUPF/HYPC)")|refseq:YP_011141.1|refseq:WP_010939210.1|ensemblbacteria:AAS96400(transcript)|ensemblbacteria:DVU_1924(gene) interpro:IPR002780(Hydrogenase formation HypD protein)|refseq:YP_009549.1|refseq:WP_010937632.1|ensemblbacteria:AAS94808(transcript)|ensemblbacteria:DVU_0325(gene)|go:"GO:0046872"(metal ion binding)|interpro:IPR042243|interpro:IPR042244 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:jQ67NXN/qOVP9dkMPrWZC15RQx8882 rogid:1a0X/rE8bnCMqYTDpcVesfb+F2w882 rigid:cbxaderP3AzRW0hCCCLlQB5QeHY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS3 uniprotkb:Q72AS4 intact:EBI-9012330 intact:EBI-9012326|ensemblbacteria:AAS96393 psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:q72as4_desvh(display_long)|uniprotkb:hysB(gene name)|psi-mi:hysB(display_short)|uniprotkb:DVU_1917(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761087 author score:0.99 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC refseq:WP_010939203.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001821([Ni-Fe]-hydrogenase, small subunit)|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR019546|interpro:IPR027394|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011134.1|interpro:IPR037024|interpro:IPR037148|ensemblbacteria:AAS96393(transcript)|ensemblbacteria:DVU_1917(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0009375"(ferredoxin hydrogenase complex)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0047806"(cytochrome-c3 hydrogenase activity)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 rogid:cFMZoNAlsTxUdQceJ2E0f3gFhhE882 rigid:PfBhyZbCODpNDmFCZhIRWpSXhYg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F89 uniprotkb:Q72AS4 intact:EBI-10068092|ensemblbacteria:AAS94808 intact:EBI-9012326|ensemblbacteria:AAS96393 psi-mi:q72f89_desvh(display_long)|uniprotkb:DVU_0325(locus name)|uniprotkb:hypD(gene name)|psi-mi:hypD(display_short) psi-mi:q72as4_desvh(display_long)|uniprotkb:hysB(gene name)|psi-mi:hysB(display_short)|uniprotkb:DVU_1917(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761080 author score:0.741 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002780(Hydrogenase formation HypD protein)|refseq:YP_009549.1|refseq:WP_010937632.1|ensemblbacteria:AAS94808(transcript)|ensemblbacteria:DVU_0325(gene)|go:"GO:0046872"(metal ion binding)|interpro:IPR042243|interpro:IPR042244 refseq:WP_010939203.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001821([Ni-Fe]-hydrogenase, small subunit)|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR019546|interpro:IPR027394|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011134.1|interpro:IPR037024|interpro:IPR037148|ensemblbacteria:AAS96393(transcript)|ensemblbacteria:DVU_1917(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0009375"(ferredoxin hydrogenase complex)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0047806"(cytochrome-c3 hydrogenase activity)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:1a0X/rE8bnCMqYTDpcVesfb+F2w882 rogid:cFMZoNAlsTxUdQceJ2E0f3gFhhE882 rigid:I0OtBttZjEX2YrJy2piFq5nMlSo false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS8 uniprotkb:Q72BI9 intact:EBI-10068219|ensemblbacteria:AAS96389 intact:EBI-11761055|ensemblbacteria:AAS96124 psi-mi:q72as8_desvh(display_long)|uniprotkb:DVU_1913(locus name) psi-mi:q72bi9_desvh(display_long)|uniprotkb:lysA-1(gene name)|psi-mi:lysA-1(display_short)|uniprotkb:lysA(gene name synonym)|uniprotkb:DVU_1647(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761073 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041740|interpro:IPR001048(Aspartate/glutamate/uridylate kinase)|interpro:IPR001341(Aspartate kinase region)|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR005260(Aspartate kinase, monofunctional class)|interpro:IPR018042|interpro:IPR027795|refseq:YP_011130.1|refseq:WP_010939199.1|ensemblbacteria:AAS96389(transcript)|ensemblbacteria:DVU_1913(gene)|go:"GO:0004072"(aspartate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0009088"(threonine biosynthetic process)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|interpro:IPR036393 interpro:IPR009006(Alanine racemase/group IV decarboxylase, C-terminal)|interpro:IPR002986(Diaminopimelate decarboxylase)|interpro:IPR022643|interpro:IPR022657|interpro:IPR022644|interpro:IPR000183(Orn/DAP/Arg decarboxylase 2)|interpro:IPR029066|refseq:WP_010938936.1|refseq:YP_010865.1|ensemblbacteria:AAS96124(transcript)|ensemblbacteria:DVU_1647(gene)|go:"GO:0008836"(diaminopimelate decarboxylase activity)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|go:"GO:0030170"(pyridoxal phosphate binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:HE9TyJTBPSQEIR8r17NML2E9oCU882 rogid:2obeogJJ0lBEJwVA4CXpTiLSZO4882 rigid:rACtxbUZNSZNPEvhvol7qoAy1oM false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU2 uniprotkb:Q72AU3 intact:EBI-10068257|ensemblbacteria:AAS96374 intact:EBI-10068264|ensemblbacteria:AAS96373 psi-mi:syga_desvh(display_long)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:DVU_1898(locus name)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short) psi-mi:sygb_desvh(display_long)|uniprotkb:Glycyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:DVU_1897(locus name)|uniprotkb:glyS(gene name)|psi-mi:glyS(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761048 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:YP_011115.1|refseq:WP_010939184.1|ensemblbacteria:AAS96374(transcript)|ensemblbacteria:DVU_1898(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation) interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|interpro:IPR015944(Glycyl-tRNA synthetase, class IIc, beta subunit)|refseq:YP_011114.1|refseq:WP_010939183.1|ensemblbacteria:AAS96373(transcript)|ensemblbacteria:DVU_1897(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:wk4lgJci269FcwmzVC1ITw0mVpw882 rogid:k2bvkoXxWkZtFh/MnAwUgMJhQWA882 rigid:bEnu9sinTMZfQu7AukW3U8Jx21A false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AV4 uniprotkb:Q72AV5 intact:EBI-11761034|ensemblbacteria:AAS96362 intact:EBI-10068341|ensemblbacteria:AAS96361 psi-mi:q72av4_desvh(display_long)|uniprotkb:DVU_1886(locus name) psi-mi:gatb_desvh(display_long)|uniprotkb:DVU_1885(locus name)|uniprotkb:gatB(gene name)|psi-mi:gatB(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761041 author score:0.668 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939172.1|refseq:YP_011103.1|interpro:IPR025350|ensemblbacteria:AAS96362(transcript)|ensemblbacteria:DVU_1886(gene) interpro:IPR042114|interpro:IPR023168|interpro:IPR003789(GatB/Yqey)|interpro:IPR004413("Glutamyl-tRNA(Gln) amidotransferase B subunit")|interpro:IPR006075(GatB N-terminal region)|interpro:IPR017958|interpro:IPR017959|interpro:IPR018027|refseq:YP_011102.1|refseq:WP_010939171.1|ensemblbacteria:AAS96361(transcript)|ensemblbacteria:DVU_1885(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:l+UZJT/hdnniAeAr4lIkgXSEKGs882 rogid:5dDsK9dmzftNNeagZxDm1pWlmBU882 rigid:TWihVob4dUlMYrqTrHbFCMGhucI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AV5 uniprotkb:Q72DX1 intact:EBI-10068341|ensemblbacteria:AAS96361 intact:EBI-10068330|ensemblbacteria:AAS95288 psi-mi:gatb_desvh(display_long)|uniprotkb:DVU_1885(locus name)|uniprotkb:gatB(gene name)|psi-mi:gatB(display_short) psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761027 author score:0.99 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042114|interpro:IPR023168|interpro:IPR003789(GatB/Yqey)|interpro:IPR004413("Glutamyl-tRNA(Gln) amidotransferase B subunit")|interpro:IPR006075(GatB N-terminal region)|interpro:IPR017958|interpro:IPR017959|interpro:IPR018027|refseq:YP_011102.1|refseq:WP_010939171.1|ensemblbacteria:AAS96361(transcript)|ensemblbacteria:DVU_1885(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:5dDsK9dmzftNNeagZxDm1pWlmBU882 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 rigid:5Mi4jUeLk6+jNzVHTklIrSqFysM false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AW4 uniprotkb:Q72AW5 intact:EBI-10068372|ensemblbacteria:AAS96352 intact:EBI-10068375|ensemblbacteria:AAS96351 psi-mi:q72aw4_desvh(display_long)|uniprotkb:DVU_1876(locus name) psi-mi:q72aw5_desvh(display_long)|uniprotkb:DVU_1875(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761020 author score:0.63 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001623(Heat shock protein DnaJ, N-terminal)|interpro:IPR002939(Chaperone DnaJ, C-terminal)|interpro:IPR008971(HSP40/DnaJ peptide-binding)|interpro:IPR018253|refseq:YP_011093.1|refseq:WP_010939162.1|ensemblbacteria:AAS96352(transcript)|ensemblbacteria:DVU_1876(gene)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036869 refseq:YP_011092.1|refseq:WP_010939161.1|ensemblbacteria:AAS96351(transcript)|ensemblbacteria:DVU_1875(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:lYpy6gR6cAedxr5LBah9piNkyBw882 rogid:teM1VjT6+wAHBOOgznm0s6z3ny0882 rigid:xRUaIoZiqLv949rjGFfXk9unu8w false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728U4 uniprotkb:Q72D75 intact:EBI-11761533|ensemblbacteria:AAS96980 intact:EBI-11761522|ensemblbacteria:AAS95534 psi-mi:q728u4_desvh(display_long)|uniprotkb:D-alanyl-D-alanine-adding enzyme(gene name synonym)|uniprotkb:DVU_2508(locus name)|uniprotkb:murF(gene name)|psi-mi:murF(display_short) psi-mi:q72d75_desvh(display_long)|uniprotkb:DVU_1054(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761552 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939778.1|refseq:YP_011720.1|interpro:IPR004101(Mur ligase, C-terminal)|interpro:IPR013221(Mur ligase, central)|interpro:IPR000713(Mur ligase, N-terminal)|interpro:IPR005863(UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase)|ensemblbacteria:AAS96980(transcript)|ensemblbacteria:DVU_2508(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008766"(UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0047480"(UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|go:"GO:0008360"(regulation of cell shape)|interpro:IPR035911|interpro:IPR036565|interpro:IPR036615 refseq:WP_010938353.1|refseq:YP_010275.1|interpro:IPR023214|interpro:IPR006549(HAD-superfamily hydrolase, subfamily IIIA)|interpro:IPR006543(Histidinol-phosphate phosphatase)|ensemblbacteria:AAS95534(transcript)|ensemblbacteria:DVU_1054(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0016791"(phosphatase activity)|interpro:IPR004446(Histidinol phosphatase-related protein)|interpro:IPR036412 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:32IQ8RmflBhASpSxTKR3J6oMT0o882 rogid:8GA4L3PCvl0RgJN2KrbNSqeTDN0882 rigid:iKUmDRdhriDD9wTfa2ronN3+idU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P61678 uniprotkb:Q728V3 intact:EBI-11761468|ensemblbacteria:AAS96975 intact:EBI-11761495|ensemblbacteria:AAS96971 psi-mi:murc_desvh(display_long)|uniprotkb:murC(gene name)|psi-mi:murC(display_short)|uniprotkb:UDP-N-acetylmuramoyl-L-alanine synthetase(gene name synonym)|uniprotkb:DVU_2503(locus name) psi-mi:q728v3_desvh(display_long)|uniprotkb:ftsZ(gene name)|psi-mi:ftsZ(display_short)|uniprotkb:DVU_2499(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761515 author score:0.45 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939773.1|refseq:YP_011715.1|interpro:IPR004101(Mur ligase, C-terminal)|interpro:IPR013221(Mur ligase, central)|interpro:IPR000713(Mur ligase, N-terminal)|interpro:IPR005758(UDP-N-acetylmuramate-alanine ligase)|ensemblbacteria:AAS96975(transcript)|ensemblbacteria:DVU_2503(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008763"(UDP-N-acetylmuramate-L-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|interpro:IPR036565|interpro:IPR036615 refseq:WP_010939769.1|refseq:YP_011711.1|interpro:IPR000158(Cell division protein FtsZ, N-terminal)|interpro:IPR020805|interpro:IPR024757|interpro:IPR008280(Tubulin/FtsZ, C-terminal)|interpro:IPR018316|interpro:IPR003008(Tubulin/FtsZ, GTPase)|ensemblbacteria:AAS96971(transcript)|ensemblbacteria:DVU_2499(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051258"(protein polymerization)|interpro:IPR036525|interpro:IPR037103 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:3fwId5DeCqqKqbCFegY4jF9jCdY882 rogid:j7qegvsjyUHgDfMH5FzErqQliOs882 rigid:9rMQepeltbdD5w1Nzr2wcIt9puU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P61678 uniprotkb:Q72C30 intact:EBI-11761468|ensemblbacteria:AAS96975 intact:EBI-10069217|ensemblbacteria:AAS95932 psi-mi:murc_desvh(display_long)|uniprotkb:murC(gene name)|psi-mi:murC(display_short)|uniprotkb:UDP-N-acetylmuramoyl-L-alanine synthetase(gene name synonym)|uniprotkb:DVU_2503(locus name) psi-mi:ispdf_desvh(display_long)|uniprotkb:ispD(gene name synonym)|uniprotkb:DVU_1454(locus name)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761488 author score:0.847 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939773.1|refseq:YP_011715.1|interpro:IPR004101(Mur ligase, C-terminal)|interpro:IPR013221(Mur ligase, central)|interpro:IPR000713(Mur ligase, N-terminal)|interpro:IPR005758(UDP-N-acetylmuramate-alanine ligase)|ensemblbacteria:AAS96975(transcript)|ensemblbacteria:DVU_2503(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008763"(UDP-N-acetylmuramate-L-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|interpro:IPR036565|interpro:IPR036615 interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|interpro:IPR029044|refseq:YP_010673.1|refseq:WP_010938747.1|ensemblbacteria:AAS95932(transcript)|ensemblbacteria:DVU_1454(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|interpro:IPR034683|interpro:IPR036571 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:3fwId5DeCqqKqbCFegY4jF9jCdY882 rogid:09vx9flKicV2MNGXlhhB263lymE882 rigid:dzhYxZOvcHeFZXfNge9V5t0Qo4Q false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728X0 uniprotkb:Q72EK1 intact:EBI-10066862 intact:EBI-10089789|ensemblbacteria:AAS95058 psi-mi:q728x0_desvh(display_long)|uniprotkb:DVU_2482(locus name)|uniprotkb:fdnG-2(gene name)|psi-mi:fdnG-2(display_short) psi-mi:q72ek1_desvh(display_long)|uniprotkb:DVU_0577(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761461 author score:0.61 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR006443(Formate dehydrogenase, alpha subunit, anaerobic)|interpro:IPR006655(Molybdopterin oxidoreductase, prokaryotic, conserved site)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_011694.1|refseq:WP_010939752.1|go:"GO:0008863"("formate dehydrogenase (NAD+) activity")|go:"GO:0009055"(electron transfer activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0045333"(cellular respiration)|go:"GO:0046872"(metal ion binding)|go:"GO:0047111"("formate dehydrogenase (cytochrome-c-553) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding) interpro:IPR006452(Formate dehydrogenase accessory protein)|interpro:IPR024064|refseq:YP_009799.1|refseq:WP_010937880.1|ensemblbacteria:AAS95058(transcript)|ensemblbacteria:DVU_0577(gene)|go:"GO:0005737"(cytoplasm) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:UeHdNQzWHi+2qYGNZoRNm/DOzVM882 rogid:nmtKlMxE5DAUT8p9XDUpjuTJHOI882 rigid:sjA9z4yAU/znxLCR+4/AcfmA68U false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q728Z3 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10066285|ensemblbacteria:AAS96931 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761454 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 rigid:1s3GWWM+w1OfW/ikm0JBz65qG0s false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729E7 uniprotkb:Q729F1 intact:EBI-10065752|ensemblbacteria:AAS96877 intact:EBI-10067171|ensemblbacteria:AAS96873 psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761447 author score:0.531 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 rigid:l0bQ0J/vblLtXk7Y/3EQ/wRajcE false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729E8 uniprotkb:Q729F3 intact:EBI-11761425|ensemblbacteria:AAS96876 intact:EBI-10067211|ensemblbacteria:AAS96871 psi-mi:q729e8_desvh(display_long)|uniprotkb:hdrB(gene name)|psi-mi:hdrB(display_short)|uniprotkb:DVU_2403(locus name) psi-mi:q729f3_desvh(display_long)|uniprotkb:DVU_2398(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761440 author score:0.469 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939675.1|refseq:YP_011616.1|interpro:IPR004017(Cysteine-rich region, CCG)|ensemblbacteria:AAS96876(transcript)|ensemblbacteria:DVU_2403(gene) interpro:IPR003251(Rubrerythrin)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_011611.1|refseq:WP_010939670.1|ensemblbacteria:AAS96871(transcript)|ensemblbacteria:DVU_2398(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:sYDPvDf+uVi1Q/GpJl+PktsRPxE882 rogid:5c3Z5OiIk/A6fVPUkfms43vqlOA882 rigid:HqLrolyQo+rTA8b+G/JBRFzZyNM false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729E8 uniprotkb:Q729F2 intact:EBI-11761425|ensemblbacteria:AAS96876 intact:EBI-10067174|ensemblbacteria:AAS96872 psi-mi:q729e8_desvh(display_long)|uniprotkb:hdrB(gene name)|psi-mi:hdrB(display_short)|uniprotkb:DVU_2403(locus name) psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761433 author score:0.639 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939675.1|refseq:YP_011616.1|interpro:IPR004017(Cysteine-rich region, CCG)|ensemblbacteria:AAS96876(transcript)|ensemblbacteria:DVU_2403(gene) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:sYDPvDf+uVi1Q/GpJl+PktsRPxE882 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 rigid:ZH29lWchJk35Wm6tI5Jx0x2rqPQ false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729E9 uniprotkb:Q729F0 intact:EBI-10065732|ensemblbacteria:AAS96875 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761418 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650 interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 rigid:tMtB5IQq9+CMQsoqNGUBAHBe3LQ false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729E9 uniprotkb:Q729F2 intact:EBI-10065732|ensemblbacteria:AAS96875 intact:EBI-10067174|ensemblbacteria:AAS96872 psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761411 author score:0.936 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650 interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 rigid:hjK6ZmovTxM2P5/xHZG/lV3/d9o false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729E9 uniprotkb:Q729F1 intact:EBI-10065732|ensemblbacteria:AAS96875 intact:EBI-10067171|ensemblbacteria:AAS96873 psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761404 author score:0.902 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650 interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 rigid:UKmonTy5Enl76xYqVp4atnxkHoo false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F0 uniprotkb:Q729F2 intact:EBI-10065740|ensemblbacteria:AAS96874 intact:EBI-10067174|ensemblbacteria:AAS96872 psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761397 author score:0.947 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 rigid:4sKij6ugcv4R7yj+YZhXK5+ykLc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F0 uniprotkb:Q729F3 intact:EBI-10065740|ensemblbacteria:AAS96874 intact:EBI-10067211|ensemblbacteria:AAS96871 psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:q729f3_desvh(display_long)|uniprotkb:DVU_2398(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761390 author score:0.493 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) interpro:IPR003251(Rubrerythrin)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_011611.1|refseq:WP_010939670.1|ensemblbacteria:AAS96871(transcript)|ensemblbacteria:DVU_2398(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 rogid:5c3Z5OiIk/A6fVPUkfms43vqlOA882 rigid:1qg7if1IfyjxyGiAVyvO+NcoQ+w false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F0 uniprotkb:Q729F1 intact:EBI-10065740|ensemblbacteria:AAS96874 intact:EBI-10067171|ensemblbacteria:AAS96873 psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761383 author score:0.876 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 rigid:Kcli9nnB80s9mn2V3TElYbytQ6o false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F1 uniprotkb:Q729F2 intact:EBI-10067171|ensemblbacteria:AAS96873 intact:EBI-10067174|ensemblbacteria:AAS96872 psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761376 author score:0.997 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 rigid:nDTHtdO1tTBbeUalzPJvPU1K130 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F2 uniprotkb:Q729F3 intact:EBI-10067174|ensemblbacteria:AAS96872 intact:EBI-10067211|ensemblbacteria:AAS96871 psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:q729f3_desvh(display_long)|uniprotkb:DVU_2398(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761369 author score:0.536 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261 interpro:IPR003251(Rubrerythrin)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_011611.1|refseq:WP_010939670.1|ensemblbacteria:AAS96871(transcript)|ensemblbacteria:DVU_2398(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 rogid:5c3Z5OiIk/A6fVPUkfms43vqlOA882 rigid:1dL5HXrvqfA4sml2fY682hxtba4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P61452 uniprotkb:Q72CS7 intact:EBI-10069611|ensemblbacteria:AAS96841 intact:EBI-10069770|ensemblbacteria:AAS95684 psi-mi:fabz_desvh(display_long)|uniprotkb:"(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase"(gene name synonym)|uniprotkb:Beta-hydroxyacyl-ACP dehydratase(gene name synonym)|uniprotkb:DVU_2368(locus name)|uniprotkb:fabZ(gene name)|psi-mi:fabZ(display_short) psi-mi:q72cs7_desvh(display_long)|uniprotkb:DVU_1206(locus name)|uniprotkb:fabG(gene name)|psi-mi:fabG(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761362 author score:0.526 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010084("Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ")|interpro:IPR013114("Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ")|interpro:IPR029069|refseq:YP_011581.1|refseq:WP_010939641.1|ensemblbacteria:AAS96841(transcript)|ensemblbacteria:DVU_2368(gene)|go:"GO:0004317"(3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008659"("(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity")|go:"GO:0008693"(3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0047451"(3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity) interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR011284("3-oxoacyl-(acyl-carrier-protein) reductase")|interpro:IPR020904|refseq:YP_010425.1|refseq:WP_010938502.1|ensemblbacteria:AAS95684(transcript)|ensemblbacteria:DVU_1206(gene)|go:"GO:0004316"("3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity")|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0051287"(NAD binding)|go:"GO:0102131"(obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity)|go:"GO:0102132"(obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity)|interpro:IPR036291 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:06uzME8m4t1mfmvVX5FYT8tcbA8882 rogid:nP40fho4nf5FZcXaxfSMEPniz+M882 rigid:PAKm6aej5+2u8Bh1fh8h0Ky6QaQ false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729I6 uniprotkb:Q72BM6 intact:EBI-10065723|ensemblbacteria:AAS96837 intact:EBI-11761337|ensemblbacteria:AAS96087 psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:dapb_desvh(display_long)|uniprotkb:dapB(gene name)|psi-mi:dapB(display_short)|uniprotkb:DVU_1609(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761355 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding) refseq:WP_010938900.1|refseq:YP_010828.1|interpro:IPR022663|interpro:IPR000846(Dihydrodipicolinate reductase)|interpro:IPR023940|ensemblbacteria:AAS96087(transcript)|ensemblbacteria:DVU_1609(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008839"(4-hydroxy-tetrahydrodipicolinate reductase)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|go:"GO:0016726"(oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor)|go:"GO:0019877"(diaminopimelate biosynthetic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR036291 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 rogid:Wne2FDgJeL68erbqXNpzsF0uyxc882 rigid:CX4exqP8l4hgquPG+HeMCfiE7Go false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729K3 uniprotkb:P62060 intact:EBI-11761314|ensemblbacteria:AAS96820 intact:EBI-11761301|ensemblbacteria:AAS95303 psi-mi:q729k3_desvh(display_long)|uniprotkb:argD(gene name)|psi-mi:argD(display_short)|uniprotkb:DVU_2347(locus name) psi-mi:argj_desvh(display_long)|uniprotkb:argJ(gene name)|psi-mi:argJ(display_short)|uniprotkb:DVU_0823(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761330 author score:0.732 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939620.1|refseq:YP_011560.1|interpro:IPR004636(Acetylornithine and succinylornithine aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|ensemblbacteria:AAS96820(transcript)|ensemblbacteria:DVU_2347(gene)|go:"GO:0003992"("N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity")|go:"GO:0005737"(cytoplasm)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding) refseq:WP_010938124.1|refseq:YP_010044.1|interpro:IPR002813(Arginine biosynthesis protein ArgJ)|interpro:IPR016117(Peptidase S58 DmpA/arginine biosynthesis protein ArgJ)|ensemblbacteria:AAS95303(transcript)|ensemblbacteria:DVU_0823(gene)|go:"GO:0004042"("acetyl-CoA:L-glutamate N-acetyltransferase activity")|go:"GO:0004358"(glutamate N-acetyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0103045"(methione N-acyltransferase activity)|interpro:IPR042195 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:mkpCeKZsl7rA6Yw+WTKLfm3x4Us882 rogid:ck2xvEllBG9qFi/NMRvoKEnokfo882 rigid:XcsPQ5tGl2uikUs8PyWQimlYDG8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729M0 uniprotkb:Q729M1 intact:EBI-11761281|ensemblbacteria:AAS96803 intact:EBI-11761262|ensemblbacteria:AAS96802 psi-mi:q729m0_desvh(display_long)|uniprotkb:DVU_2330(locus name) psi-mi:q729m1_desvh(display_long)|uniprotkb:hypB(gene name)|psi-mi:hypB(display_short)|uniprotkb:DVU_2329(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761294 author score:0.614 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939603.1|refseq:YP_011543.1|interpro:IPR019591|interpro:IPR000808(Mrp, conserved site)|interpro:IPR027417|ensemblbacteria:AAS96803(transcript)|ensemblbacteria:DVU_2330(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016226"(iron-sulfur cluster assembly)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR033756 refseq:WP_010939602.1|refseq:YP_011542.1|interpro:IPR003495("Cobalamin (vitamin B12) biosynthesis CobW-like")|interpro:IPR004392(Hydrogenase accessory protein HypB)|interpro:IPR027417|ensemblbacteria:AAS96802(transcript)|ensemblbacteria:DVU_2329(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:n4G0Pb81tIc+CzhCccesnPCie7s882 rogid:rG1+k0buD9Pe3X6gl4Ql7ro51N0882 rigid:Ln1DFzZEr4QRDiwu2pLrtUKSbVg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729M1 uniprotkb:Q72F89 intact:EBI-11761262|ensemblbacteria:AAS96802 intact:EBI-10068092|ensemblbacteria:AAS94808 psi-mi:q729m1_desvh(display_long)|uniprotkb:hypB(gene name)|psi-mi:hypB(display_short)|uniprotkb:DVU_2329(locus name) psi-mi:q72f89_desvh(display_long)|uniprotkb:DVU_0325(locus name)|uniprotkb:hypD(gene name)|psi-mi:hypD(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761274 author score:0.855 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939602.1|refseq:YP_011542.1|interpro:IPR003495("Cobalamin (vitamin B12) biosynthesis CobW-like")|interpro:IPR004392(Hydrogenase accessory protein HypB)|interpro:IPR027417|ensemblbacteria:AAS96802(transcript)|ensemblbacteria:DVU_2329(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation) interpro:IPR002780(Hydrogenase formation HypD protein)|refseq:YP_009549.1|refseq:WP_010937632.1|ensemblbacteria:AAS94808(transcript)|ensemblbacteria:DVU_0325(gene)|go:"GO:0046872"(metal ion binding)|interpro:IPR042243|interpro:IPR042244 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:rG1+k0buD9Pe3X6gl4Ql7ro51N0882 rogid:1a0X/rE8bnCMqYTDpcVesfb+F2w882 rigid:mzRYqdtYiahxIRIfAVNBvaBjVpA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q8 uniprotkb:Q729Q9 intact:EBI-10067332|ensemblbacteria:AAS96764 intact:EBI-10067338|ensemblbacteria:AAS96763 psi-mi:q729q8_desvh(display_long)|uniprotkb:DVU_2291(locus name) psi-mi:q729q9_desvh(display_long)|uniprotkb:DVU_2290(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761255 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|refseq:WP_010939566.1|interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR029014|refseq:YP_011504.1|ensemblbacteria:AAS96764(transcript)|ensemblbacteria:DVU_2291(gene)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding) interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|ensemblbacteria:AAS96763(transcript)|ensemblbacteria:DVU_2290(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|interpro:IPR037232 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Yt5P32YlY9IMEma6vpaTTK4+uUc882 rogid:vId31Wmn6in1ErXb+Zeb8SIpIjQ882 rigid:naRIe79OtHSCo/4snhuZD/aAWms false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q9 uniprotkb:Q72EY8 intact:EBI-10067338|ensemblbacteria:AAS96763 intact:EBI-10071548|ensemblbacteria:AAS94913 psi-mi:q729q9_desvh(display_long)|uniprotkb:DVU_2290(locus name) psi-mi:q72ey8_desvh(display_long)|uniprotkb:DVU_0430(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761248 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|ensemblbacteria:AAS96763(transcript)|ensemblbacteria:DVU_2290(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|interpro:IPR037232 interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|interpro:IPR029014|refseq:YP_009654.1|refseq:WP_010937737.1|ensemblbacteria:AAS94913(transcript)|ensemblbacteria:DVU_0430(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:vId31Wmn6in1ErXb+Zeb8SIpIjQ882 rogid:eyLxgOA8tI+qucvmVtOAAJlSJwo882 rigid:/9zyzr5Ct0JPUGMYqPPGOCxfCN4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729U7 uniprotkb:Q729U8 intact:EBI-10065900|ensemblbacteria:AAS96724 intact:EBI-10067367|ensemblbacteria:AAS96723 psi-mi:q729u7_desvh(display_long)|uniprotkb:DVU_2251(locus name) psi-mi:q729u8_desvh(display_long)|uniprotkb:DVU_2250(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761241 author score:0.603 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001387(Helix-turn-helix type 3)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|interpro:IPR011051(Cupin, RmlC-type)|interpro:IPR013096(Cupin 2, conserved barrel)|interpro:IPR014710(RmlC-like jelly roll fold)|refseq:YP_011464.1|refseq:WP_010939526.1|ensemblbacteria:AAS96724(transcript)|ensemblbacteria:DVU_2251(gene)|go:"GO:0003677"(DNA binding) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR020845|interpro:IPR025110|refseq:YP_011463.1|refseq:WP_010939525.1|ensemblbacteria:AAS96723(transcript)|ensemblbacteria:DVU_2250(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:9GqiNXYRfuPwD7YOjwThmdE6ATI882 rogid:MRzyTgNuRcZ46t/X+BFkEa+oOkM882 rigid:Wp7Duyioq64msl3H9Fj+zSZ5P+Y false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72A55 uniprotkb:Q72A57 intact:EBI-11761221|ensemblbacteria:AAS96615 intact:EBI-10069070|ensemblbacteria:AAS96613 psi-mi:sure_desvh(display_long)|uniprotkb:surE(gene name)|psi-mi:surE(display_short)|uniprotkb:Nucleoside 5'-monophosphate phosphohydrolase(gene name synonym)|uniprotkb:DVU_2142(locus name) psi-mi:kthy_desvh(display_long)|uniprotkb:dTMP kinase(gene name synonym)|uniprotkb:DVU_2140(locus name)|uniprotkb:tmk(gene name)|psi-mi:tmk(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761234 author score:0.533 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939419.1|refseq:YP_011355.1|interpro:IPR030048|interpro:IPR002828(Survival protein SurE-like phosphatase/nucleotidase)|ensemblbacteria:AAS96615(transcript)|ensemblbacteria:DVU_2142(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008253"(5'-nucleotidase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR036523 interpro:IPR018094|interpro:IPR018095|interpro:IPR027417|refseq:YP_011353.1|refseq:WP_010939417.1|ensemblbacteria:AAS96613(transcript)|ensemblbacteria:DVU_2140(gene)|go:"GO:0004798"(thymidylate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006233"(dTDP biosynthetic process)|go:"GO:0006235"(dTTP biosynthetic process)|interpro:IPR039430 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Sm90Pl6W7hFTbCFGTkiD37mYahs882 rogid:h/HaVwefbDuBbQGwEFm9KY0Y3m4882 rigid:SxzidAWCIJVqAByNkX6F6UNofu0 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72A93 uniprotkb:Q72A94 intact:EBI-10065729|ensemblbacteria:AAS96577 intact:EBI-10065907|ensemblbacteria:AAS96576 psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:q72a94_desvh(display_long)|uniprotkb:DVU_2103(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761214 author score:0.877 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011316.1|refseq:WP_010939380.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|ensemblbacteria:AAS96576(transcript)|ensemblbacteria:DVU_2103(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 rogid:bIlVXxSJZO2d9vZ2o9xs0d/Wo/Q882 rigid:J2KXMZTPl6pwyidEcpbCEMGVKy8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72A97 uniprotkb:Q72DN6 intact:EBI-10090342|ensemblbacteria:AAS96573 intact:EBI-11761197|ensemblbacteria:AAS95373 psi-mi:q72a97_desvh(display_long)|uniprotkb:DVU_2100(locus name) psi-mi:q72dn6_desvh(display_long)|uniprotkb:DVU_0893(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761207 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_011313.1|refseq:WP_010939377.1|ensemblbacteria:AAS96573(transcript)|ensemblbacteria:DVU_2100(gene) refseq:YP_010114.1|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|ensemblbacteria:AAS95373(transcript)|ensemblbacteria:DVU_0893(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:tGVslyGqzuRQay5gf8RzFeNOHAA882 rogid:O8ekxKtydmNmpffV5oFA7MK46Fc882 rigid:WcSCN9JllL4Jb8pkpdwkjk/EsSU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F3 uniprotkb:Q72D35 intact:EBI-10066383|ensemblbacteria:AAS97374 intact:EBI-11760594|ensemblbacteria:AAS95576 psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:otc_desvh(display_long)|uniprotkb:argF(gene name)|psi-mi:argF(display_short)|uniprotkb:DVU_1096(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761907 author score:0.984 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process) refseq:WP_010938395.1|refseq:YP_010317.1|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR002292(Ornithine carbamoyltransferase)|interpro:IPR024904|ensemblbacteria:AAS95576(transcript)|ensemblbacteria:DVU_1096(gene)|go:"GO:0004585"(ornithine carbamoyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0016597"(amino acid binding)|interpro:IPR036901 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 rogid:hDIOvVaaovjE5ETteUYCdI3jfJY882 rigid:cTFkKhK8sDWYMzBadOY12D5kSVg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F3 uniprotkb:Q72FQ1 intact:EBI-10066383|ensemblbacteria:AAS97374 intact:EBI-10065635|ensemblbacteria:AAS94646 psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761900 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process) interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 rigid:lLFMyNOSh9vYkTiQ7ZLsDJx4TE0 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F3 uniprotkb:Q728X6 intact:EBI-10066383|ensemblbacteria:AAS97374 intact:EBI-11761880|ensemblbacteria:AAS96948 psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:q728x6_desvh(display_long)|uniprotkb:gltA(gene name)|psi-mi:gltA(display_short)|uniprotkb:DVU_2476(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761893 author score:0.991 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process) refseq:WP_010939746.1|refseq:YP_011688.1|interpro:IPR028261|interpro:IPR023753|interpro:IPR006004("Glutamate synthase (NADPH), homotetrameric")|interpro:IPR009051(Alpha-helical ferredoxin)|ensemblbacteria:AAS96948(transcript)|ensemblbacteria:DVU_2476(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 rogid:cIfdj0uDbR5ao0CcR/ZhroPTLEY882 rigid:7MMZ1e0jjiLOF7ssNOQLkGMhqZ4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F3 uniprotkb:Q72CA0 intact:EBI-10066383|ensemblbacteria:AAS97374 intact:EBI-10069386|ensemblbacteria:AAS95862 psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:q72ca0_desvh(display_long)|uniprotkb:DVU_1384(locus name)|uniprotkb:pyrR(gene name)|psi-mi:pyrR(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761873 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process) interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR023050|interpro:IPR029057|refseq:YP_010603.1|refseq:WP_010938679.1|ensemblbacteria:AAS95862(transcript)|ensemblbacteria:DVU_1384(gene)|go:"GO:0004845"(uracil phosphoribosyltransferase activity)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009116"(nucleoside metabolic process) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 rogid:51zB9j3d6COhAw2JbqKtWWvfdlw882 rigid:AU8hUM6oBjQouKN+9hvY4VriaAc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F3 uniprotkb:Q727F4 intact:EBI-10066383|ensemblbacteria:AAS97374 intact:EBI-10066379|ensemblbacteria:AAS97373 psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:pyrb_desvh(display_long)|uniprotkb:Aspartate transcarbamylase(gene name synonym)|uniprotkb:DVU_2901(locus name)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761866 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process) interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|refseq:YP_012113.1|refseq:WP_010940161.1|ensemblbacteria:AAS97373(transcript)|ensemblbacteria:DVU_2901(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR036901 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 rogid:W13RREVUawgRc7XxXkARSwTUTDA882 rigid:56aUpNUl+2dsFYDITRe9NKKfok8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F4 uniprotkb:Q72FQ1 intact:EBI-10066379|ensemblbacteria:AAS97373 intact:EBI-10065635|ensemblbacteria:AAS94646 psi-mi:pyrb_desvh(display_long)|uniprotkb:Aspartate transcarbamylase(gene name synonym)|uniprotkb:DVU_2901(locus name)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short) psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761859 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|refseq:YP_012113.1|refseq:WP_010940161.1|ensemblbacteria:AAS97373(transcript)|ensemblbacteria:DVU_2901(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR036901 interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:W13RREVUawgRc7XxXkARSwTUTDA882 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 rigid:QQUiDdo+t/+KQef23OEoKh4aZqY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F4 uniprotkb:Q72CA0 intact:EBI-10066379|ensemblbacteria:AAS97373 intact:EBI-10069386|ensemblbacteria:AAS95862 psi-mi:pyrb_desvh(display_long)|uniprotkb:Aspartate transcarbamylase(gene name synonym)|uniprotkb:DVU_2901(locus name)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short) psi-mi:q72ca0_desvh(display_long)|uniprotkb:DVU_1384(locus name)|uniprotkb:pyrR(gene name)|psi-mi:pyrR(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761852 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|refseq:YP_012113.1|refseq:WP_010940161.1|ensemblbacteria:AAS97373(transcript)|ensemblbacteria:DVU_2901(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR036901 interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR023050|interpro:IPR029057|refseq:YP_010603.1|refseq:WP_010938679.1|ensemblbacteria:AAS95862(transcript)|ensemblbacteria:DVU_1384(gene)|go:"GO:0004845"(uracil phosphoribosyltransferase activity)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009116"(nucleoside metabolic process) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:W13RREVUawgRc7XxXkARSwTUTDA882 rogid:51zB9j3d6COhAw2JbqKtWWvfdlw882 rigid:O0mmNTyx1pOrCYz76iBL/TU7PxQ false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45573 uniprotkb:P45574 intact:EBI-9017020|ensemblbacteria:AAS97248 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761845 author score:0.88 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072 ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 rigid:c8+snihnJ8yykiHu0upkCQKhD+s false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45573 uniprotkb:P45575 intact:EBI-9017020|ensemblbacteria:AAS97248 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761838 author score:0.9 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072 ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 rigid:8cd7/HEQdtXFDA2FjQM2cabg3AQ false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727T4 uniprotkb:Q72FF5 intact:EBI-11761821|ensemblbacteria:AAS97242 intact:EBI-10087927|ensemblbacteria:AAS94742 psi-mi:q727t4_desvh(display_long)|uniprotkb:DVU_2770(locus name) psi-mi:q72ff5_desvh(display_long)|uniprotkb:DVU_0259(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761831 author score:0.462 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940036.1|refseq:YP_011982.1|interpro:IPR011006(CheY-like)|interpro:IPR001789(Signal transduction response regulator, receiver region)|ensemblbacteria:AAS97242(transcript)|ensemblbacteria:DVU_2770(gene)|go:"GO:0000160"(phosphorelay signal transduction system) refseq:WP_010937568.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR011006(CheY-like)|refseq:YP_009483.1|ensemblbacteria:AAS94742(transcript)|ensemblbacteria:DVU_0259(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:UXFJVidjrlzwg8HVFKE7twOfGN4882 rogid:XMlzvvO1z0LpSxD/QapDjJNTdbI882 rigid:8XWOREAtI3Zdqq1w4Jfkq9A5WWc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U1 uniprotkb:Q72BF3 intact:EBI-11761803|ensemblbacteria:AAS97235 intact:EBI-11761797|ensemblbacteria:AAS96160 psi-mi:q727u1_desvh(display_long)|uniprotkb:DVU_2763(locus name) psi-mi:q72bf3_desvh(display_long)|uniprotkb:DVU_1683(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761814 author score:0.892 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011990(Tetratricopeptide-like helical)|refseq:YP_011975.1|interpro:IPR000160(GGDEF)|interpro:IPR029787|interpro:IPR019734|ensemblbacteria:AAS97235(transcript)|ensemblbacteria:DVU_2763(gene)|interpro:IPR043128 refseq:WP_010938972.1|refseq:YP_010901.1|ensemblbacteria:AAS96160(transcript)|ensemblbacteria:DVU_1683(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:ob9qljST2pyVLjyfrCiBJC08BZc882 rogid:fYYRveBQVgLUCmx7V91MNcrKxmM882 rigid:WMtACaV9lNuhWMF1vggGJuJ/rF0 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U7 uniprotkb:Q727U8 intact:EBI-10066608|ensemblbacteria:AAS97229 intact:EBI-10066617|ensemblbacteria:AAS97228 psi-mi:q727u7_desvh(display_long)|uniprotkb:mqnC(gene name)|psi-mi:mqnC(display_short)|uniprotkb:Dehypoxanthine futalosine cyclase(gene name synonym)|uniprotkb:Menaquinone biosynthetic enzyme MqnC(gene name synonym)|uniprotkb:DVU_2757(locus name) psi-mi:q727u8_desvh(display_long)|uniprotkb:mqnE(gene name)|psi-mi:mqnE(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnE(gene name synonym)|uniprotkb:DVU_2756(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761790 author score:0.972 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022431|refseq:WP_010940023.1|refseq:YP_011969.1|ensemblbacteria:AAS97229(transcript)|ensemblbacteria:DVU_2757(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016765"("transferase activity, transferring alkyl or aryl (other than methyl) groups")|go:"GO:0046992"(oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034405 interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022432|refseq:YP_011968.1|refseq:WP_010940022.1|ensemblbacteria:AAS97228(transcript)|ensemblbacteria:DVU_2756(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102573"(aminodeoxyfutalosine synthase activity)|interpro:IPR034405 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:xfEZwr+QU1wyHEErrzqsORFf6SE882 rogid:bb3wBr3eiO33UmFoNQPmFaoQ0Ok882 rigid:DO+jtGgNtcU/U32qMmlcKCfcQ1E false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728D3 uniprotkb:Q728D4 intact:EBI-11761774|ensemblbacteria:AAS97142 intact:EBI-10066654|ensemblbacteria:AAS97141 psi-mi:q728d3_desvh(display_long)|uniprotkb:DVU_2670(locus name) psi-mi:q728d4_desvh(display_long)|uniprotkb:DVU_2669(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761783 author score:0.621 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939939.1|refseq:YP_011882.1|interpro:IPR007838(Cell division protein ZapA-like)|ensemblbacteria:AAS97142(transcript)|ensemblbacteria:DVU_2670(gene)|interpro:IPR036192 interpro:IPR009252(Protein of unknown function DUF904)|refseq:YP_011881.1|refseq:WP_010939938.1|ensemblbacteria:AAS97141(transcript)|ensemblbacteria:DVU_2669(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0090529"(cell septum assembly) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:d9XgWa+DMc2uRmjq97eCpRPMQSk882 rogid:Y0lpJ9N1HoulRyR3vcl5T+8xv0c882 rigid:Ndnwt3WZ/NrBtUM8FJmng+ZT+N0 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728D5 uniprotkb:Q72CK1 intact:EBI-11761743|ensemblbacteria:AAS97140 intact:EBI-11760692|ensemblbacteria:AAS95760 psi-mi:glmu_desvh(display_long)|uniprotkb:glmU(gene name)|psi-mi:glmU(display_short)|uniprotkb:DVU_2668(locus name) psi-mi:glmm_desvh(display_long)|uniprotkb:glmM(gene name)|psi-mi:glmM(display_short)|uniprotkb:DVU_1282(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761767 author score:0.925 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038009|refseq:WP_010939937.1|refseq:YP_011880.1|interpro:IPR005882(UDP-N-acetylglucosamine pyrophosphorylase)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR018357|interpro:IPR025877|interpro:IPR029044|interpro:IPR011004(Trimeric LpxA-like)|ensemblbacteria:AAS97140(transcript)|ensemblbacteria:DVU_2668(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0003977"(UDP-N-acetylglucosamine diphosphorylase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006048"(UDP-N-acetylglucosamine biosynthetic process)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0019134"(glucosamine-1-phosphate N-acetyltransferase activity)|go:"GO:0071555"(cell wall organization) refseq:WP_010938578.1|refseq:YP_010501.1|interpro:IPR005844(Alpha-D-phosphohexomutase, alpha/beta/alpha domain I)|interpro:IPR016055(Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III)|interpro:IPR005845(Alpha-D-phosphohexomutase, alpha/beta/alpha domain II)|interpro:IPR005846(Alpha-D-phosphohexomutase, alpha/beta/alpha domain III)|interpro:IPR005843(Alpha-D-phosphohexomutase, C-terminal)|interpro:IPR016066(Alpha-D-phosphohexomutase, conserved site)|interpro:IPR005841(Alpha-D-phosphohexomutase, N-terminal)|interpro:IPR006352(Phosphoglucosamine mutase)|ensemblbacteria:AAS95760(transcript)|ensemblbacteria:DVU_1282(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0008966"(phosphoglucosamine mutase activity)|interpro:IPR036900 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:AQkVmUlLMOPGOZAwSaFXP+/FNWk882 rogid:WTOG/g0uvQSnNfPFTCZ5ARFE1YU882 rigid:QqzbfP5k1ZwuNgGhK/9q7NpPStM false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728M2 uniprotkb:Q72FF5 intact:EBI-11761726|ensemblbacteria:AAS97053 intact:EBI-10087927|ensemblbacteria:AAS94742 psi-mi:q728m2_desvh(display_long)|uniprotkb:DVU_2581(locus name) psi-mi:q72ff5_desvh(display_long)|uniprotkb:DVU_0259(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761736 author score:0.514 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939851.1|refseq:YP_011793.1|interpro:IPR011006(CheY-like)|interpro:IPR001789(Signal transduction response regulator, receiver region)|ensemblbacteria:AAS97053(transcript)|ensemblbacteria:DVU_2581(gene)|go:"GO:0000160"(phosphorelay signal transduction system) refseq:WP_010937568.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR011006(CheY-like)|refseq:YP_009483.1|ensemblbacteria:AAS94742(transcript)|ensemblbacteria:DVU_0259(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:uiVCCTssmaxoRBhsyuuqWdo1Q2Y882 rogid:XMlzvvO1z0LpSxD/QapDjJNTdbI882 rigid:OpTq3M74tUvcUUdcnqNvpesoVOc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728R9 uniprotkb:Q728S0 intact:EBI-10066828|ensemblbacteria:AAS97006 intact:EBI-10066832|ensemblbacteria:AAS97005 psi-mi:syfa_desvh(display_long)|uniprotkb:Phenylalanyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:DVU_2534(locus name)|uniprotkb:pheS(gene name)|psi-mi:pheS(display_short) psi-mi:syfb_desvh(display_long)|uniprotkb:Phenylalanyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:DVU_2533(locus name)|uniprotkb:pheT(gene name)|psi-mi:pheT(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761719 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002319(Phenylalanyl-tRNA synthetase, class IIc)|interpro:IPR004188(Phenylalanyl-tRNA synthetase, class II, N-terminal)|interpro:IPR004529(Phenylalanyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR010978(tRNA-binding arm)|interpro:IPR022911|refseq:YP_011746.1|interpro:IPR004530(Phenylalanyl-tRNA synthetase, class IIc, mitochondrial)|refseq:WP_010939804.1|ensemblbacteria:AAS97006(transcript)|ensemblbacteria:DVU_2534(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004826"(phenylalanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006432"(phenylalanyl-tRNA aminoacylation) interpro:IPR033714|interpro:IPR041616|interpro:IPR002547(tRNA-binding region)|interpro:IPR004532(Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial)|interpro:IPR005121(Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding)|interpro:IPR005146(B3/B4 tRNA-binding domain)|interpro:IPR005147(tRNA synthetase, B5)|interpro:IPR009061(Putative DNA binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR020825|refseq:YP_011745.1|refseq:WP_010939803.1|ensemblbacteria:AAS97005(transcript)|ensemblbacteria:DVU_2533(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004826"(phenylalanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006432"(phenylalanyl-tRNA aminoacylation)|interpro:IPR036690 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:aiELm7w+ZvsH59BO0c+ku2JbKUo882 rogid:M5KKtI51DqQ6nkdWC6SRIfl5s4c882 rigid:k12tDjKeWS5ZwPFFotxbVccO4Hg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728S0 uniprotkb:P61700 intact:EBI-10066832|ensemblbacteria:AAS97005 intact:EBI-11761690|ensemblbacteria:AAS95569 psi-mi:syfb_desvh(display_long)|uniprotkb:Phenylalanyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:DVU_2533(locus name)|uniprotkb:pheT(gene name)|psi-mi:pheT(display_short) psi-mi:sya_desvh(display_long)|uniprotkb:alaS(gene name)|psi-mi:alaS(display_short)|uniprotkb:Alanyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_1089(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761712 author score:0.777 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033714|interpro:IPR041616|interpro:IPR002547(tRNA-binding region)|interpro:IPR004532(Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial)|interpro:IPR005121(Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding)|interpro:IPR005146(B3/B4 tRNA-binding domain)|interpro:IPR005147(tRNA synthetase, B5)|interpro:IPR009061(Putative DNA binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR020825|refseq:YP_011745.1|refseq:WP_010939803.1|ensemblbacteria:AAS97005(transcript)|ensemblbacteria:DVU_2533(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004826"(phenylalanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006432"(phenylalanyl-tRNA aminoacylation)|interpro:IPR036690 refseq:WP_010938388.1|refseq:YP_010310.1|interpro:IPR002318(Alanyl-tRNA synthetase, class IIc)|interpro:IPR018162|interpro:IPR018165|interpro:IPR018164|interpro:IPR023033|interpro:IPR003156(Phosphoesterase, DHHA1)|interpro:IPR018163|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR012947(Threonyl/alanyl tRNA synthetase, SAD)|ensemblbacteria:AAS95569(transcript)|ensemblbacteria:DVU_1089(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004813"(alanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006419"(alanyl-tRNA aminoacylation)|go:"GO:0008270"(zinc ion binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:M5KKtI51DqQ6nkdWC6SRIfl5s4c882 rogid:7rgvxv0/VRblPs/EiDzNtwugc4s882 rigid:WN7xhHNtAi5OWwfUuYCoSWeqTNg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728S2 uniprotkb:Q728S3 intact:EBI-11761668|ensemblbacteria:AAS97003 intact:EBI-11761644|ensemblbacteria:AAS97002 psi-mi:q728s2_desvh(display_long)|uniprotkb:rpe(gene name)|psi-mi:rpe(display_short)|uniprotkb:DVU_2531(locus name) psi-mi:q728s3_desvh(display_long)|uniprotkb:tkt(gene name)|psi-mi:tkt(display_short)|uniprotkb:DVU_2530(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761683 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939801.1|refseq:YP_011743.1|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR026019|interpro:IPR000056(Ribulose-phosphate 3-epimerase)|interpro:IPR011060(Ribulose-phosphate binding barrel)|ensemblbacteria:AAS97003(transcript)|ensemblbacteria:DVU_2531(gene)|go:"GO:0004750"(D-ribulose-phosphate 3-epimerase activity)|go:"GO:0006098"(pentose-phosphate shunt)|go:"GO:0019323"(pentose catabolic process)|go:"GO:0046872"(metal ion binding) refseq:WP_010939800.1|refseq:YP_011742.1|interpro:IPR029061|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR005475(Transketolase, central region)|interpro:IPR005478(Bacterial transketolase)|interpro:IPR020826|interpro:IPR033248|interpro:IPR033247|interpro:IPR005474(Transketolase, N-terminal)|ensemblbacteria:AAS97002(transcript)|ensemblbacteria:DVU_2530(gene)|go:"GO:0004802"(transketolase activity)|go:"GO:0046872"(metal ion binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:ZVqV4b14hoDn9sOaTS7N1NknpOc882 rogid:4PBMk4DqH5Im4xbXSoqecsOHr2Q882 rigid:SqX9ppimK3/osUtZvwcL9+6EPjM false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728S3 uniprotkb:Q72A53 intact:EBI-11761644|ensemblbacteria:AAS97002 intact:EBI-10067563|ensemblbacteria:AAS96617 psi-mi:q728s3_desvh(display_long)|uniprotkb:tkt(gene name)|psi-mi:tkt(display_short)|uniprotkb:DVU_2530(locus name) psi-mi:q72a53_desvh(display_long)|uniprotkb:DVU_2144(locus name)|uniprotkb:gap-2(gene name)|psi-mi:gap-2(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761661 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939800.1|refseq:YP_011742.1|interpro:IPR029061|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR005475(Transketolase, central region)|interpro:IPR005478(Bacterial transketolase)|interpro:IPR020826|interpro:IPR033248|interpro:IPR033247|interpro:IPR005474(Transketolase, N-terminal)|ensemblbacteria:AAS97002(transcript)|ensemblbacteria:DVU_2530(gene)|go:"GO:0004802"(transketolase activity)|go:"GO:0046872"(metal ion binding) refseq:WP_010939421.1|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:YP_011357.1|ensemblbacteria:AAS96617(transcript)|ensemblbacteria:DVU_2144(gene)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0016620"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR036291 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:4PBMk4DqH5Im4xbXSoqecsOHr2Q882 rogid:mnhUR9jhbpL2tSACKeOzSSgcQFs882 rigid:e+AEAweg5XEiGoskUG6yQ+Cb5wU false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728T1 uniprotkb:Q72EV5 intact:EBI-11761620|ensemblbacteria:AAS96993 intact:EBI-10065482|ensemblbacteria:AAS94946 psi-mi:q728t1_desvh(display_long)|uniprotkb:aroK-2(gene name)|psi-mi:aroK-2(display_short)|uniprotkb:aroK(gene name synonym)|uniprotkb:DVU_2521(locus name) psi-mi:q72ev5_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate synthase(gene name synonym)|uniprotkb:DVU_0463(locus name)|uniprotkb:aroA(gene name)|psi-mi:aroA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761637 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR031322|interpro:IPR000623(Shikimate kinase)|interpro:IPR027417|refseq:WP_010939791.1|refseq:YP_011733.1|ensemblbacteria:AAS96993(transcript)|ensemblbacteria:DVU_2521(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004765"(shikimate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process) interpro:IPR001986(3-phosphoshikimate 1-carboxyvinyltransferase, core)|interpro:IPR006264(3-phosphoshikimate 1-carboxyvinyltransferase, subgroup)|interpro:IPR013792(RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)|refseq:WP_010937770.1|refseq:YP_009687.1|ensemblbacteria:AAS94946(transcript)|ensemblbacteria:DVU_0463(gene)|go:"GO:0003866"(3-phosphoshikimate 1-carboxyvinyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR036968 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:kiowcnpB1GJ+SIHoNQ7Xl6RHy3E882 rogid:wTgIPqX9LPxWksya/Ts48V+an18882 rigid:mcBjlTYWzC+UWyAzWd/9ltd8tjA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728U3 uniprotkb:Q728V0 intact:EBI-11761559|ensemblbacteria:AAS96981 intact:EBI-11761592|ensemblbacteria:AAS96974 psi-mi:q728u3_desvh(display_long)|uniprotkb:murE(gene name)|psi-mi:murE(display_short)|uniprotkb:Meso-A2pm-adding enzyme(gene name synonym)|uniprotkb:Meso-diaminopimelate-adding enzyme(gene name synonym)|uniprotkb:"UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase"(gene name synonym)|uniprotkb:UDP-MurNAc-tripeptide synthetase(gene name synonym)|uniprotkb:UDP-N-acetylmuramyl-tripeptide synthetase(gene name synonym)|uniprotkb:DVU_2509(locus name) psi-mi:murb_desvh(display_long)|uniprotkb:murB(gene name)|psi-mi:murB(display_short)|uniprotkb:UDP-N-acetylmuramate dehydrogenase(gene name synonym)|uniprotkb:DVU_2502(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761613 author score:0.818 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939779.1|refseq:YP_011721.1|interpro:IPR004101(Mur ligase, C-terminal)|interpro:IPR013221(Mur ligase, central)|interpro:IPR000713(Mur ligase, N-terminal)|interpro:IPR005761(UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase)|ensemblbacteria:AAS96981(transcript)|ensemblbacteria:DVU_2509(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008765"(UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|interpro:IPR035911|interpro:IPR036565|interpro:IPR036615 interpro:IPR016167(FAD-binding, type 2, subdomain 1)|interpro:IPR003170(UDP-N-acetylenolpyruvoylglucosamine reductase)|interpro:IPR011601(UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal)|interpro:IPR006094(FAD linked oxidase, N-terminal)|refseq:WP_010939772.1|refseq:YP_011714.1|interpro:IPR016166(FAD-binding, type 2)|ensemblbacteria:AAS96974(transcript)|ensemblbacteria:DVU_2502(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008762"(UDP-N-acetylmuramate dehydrogenase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|go:"GO:0071949"(FAD binding)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR036318|interpro:IPR036635 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:dS3rfGiYyONsEBlk1ppMVwbaBRA882 rogid:6P7uO9IaH2ZeIsBcAg1gls8dBwo882 rigid:BILfv6M6f12UkqHHTHtE67lok4c false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728U3 uniprotkb:Q72DR0 intact:EBI-11761559|ensemblbacteria:AAS96981 intact:EBI-11760377|ensemblbacteria:AAS95349 psi-mi:q728u3_desvh(display_long)|uniprotkb:murE(gene name)|psi-mi:murE(display_short)|uniprotkb:Meso-A2pm-adding enzyme(gene name synonym)|uniprotkb:Meso-diaminopimelate-adding enzyme(gene name synonym)|uniprotkb:"UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase"(gene name synonym)|uniprotkb:UDP-MurNAc-tripeptide synthetase(gene name synonym)|uniprotkb:UDP-N-acetylmuramyl-tripeptide synthetase(gene name synonym)|uniprotkb:DVU_2509(locus name) psi-mi:q72dr0_desvh(display_long)|uniprotkb:uppS(gene name)|psi-mi:uppS(display_short)|uniprotkb:DVU_0869(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761585 author score:0.851 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939779.1|refseq:YP_011721.1|interpro:IPR004101(Mur ligase, C-terminal)|interpro:IPR013221(Mur ligase, central)|interpro:IPR000713(Mur ligase, N-terminal)|interpro:IPR005761(UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase)|ensemblbacteria:AAS96981(transcript)|ensemblbacteria:DVU_2509(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008765"(UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|interpro:IPR035911|interpro:IPR036565|interpro:IPR036615 refseq:WP_010938168.1|refseq:YP_010090.1|interpro:IPR001441(Di-trans-poly-cis-decaprenylcistransferase)|ensemblbacteria:AAS95349(transcript)|ensemblbacteria:DVU_0869(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004659"(prenyltransferase activity)|interpro:IPR036424 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:dS3rfGiYyONsEBlk1ppMVwbaBRA882 rogid:yaTB2s0rolkzVbR8lyLhQAN47gg882 rigid:ITgV/cg3xUam00N1ijlI59eVHiI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728U3 uniprotkb:P61678 intact:EBI-11761559|ensemblbacteria:AAS96981 intact:EBI-11761468|ensemblbacteria:AAS96975 psi-mi:q728u3_desvh(display_long)|uniprotkb:murE(gene name)|psi-mi:murE(display_short)|uniprotkb:Meso-A2pm-adding enzyme(gene name synonym)|uniprotkb:Meso-diaminopimelate-adding enzyme(gene name synonym)|uniprotkb:"UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase"(gene name synonym)|uniprotkb:UDP-MurNAc-tripeptide synthetase(gene name synonym)|uniprotkb:UDP-N-acetylmuramyl-tripeptide synthetase(gene name synonym)|uniprotkb:DVU_2509(locus name) psi-mi:murc_desvh(display_long)|uniprotkb:murC(gene name)|psi-mi:murC(display_short)|uniprotkb:UDP-N-acetylmuramoyl-L-alanine synthetase(gene name synonym)|uniprotkb:DVU_2503(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761578 author score:0.909 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939779.1|refseq:YP_011721.1|interpro:IPR004101(Mur ligase, C-terminal)|interpro:IPR013221(Mur ligase, central)|interpro:IPR000713(Mur ligase, N-terminal)|interpro:IPR005761(UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase)|ensemblbacteria:AAS96981(transcript)|ensemblbacteria:DVU_2509(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008765"(UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|interpro:IPR035911|interpro:IPR036565|interpro:IPR036615 refseq:WP_010939773.1|refseq:YP_011715.1|interpro:IPR004101(Mur ligase, C-terminal)|interpro:IPR013221(Mur ligase, central)|interpro:IPR000713(Mur ligase, N-terminal)|interpro:IPR005758(UDP-N-acetylmuramate-alanine ligase)|ensemblbacteria:AAS96975(transcript)|ensemblbacteria:DVU_2503(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008763"(UDP-N-acetylmuramate-L-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|interpro:IPR036565|interpro:IPR036615 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:dS3rfGiYyONsEBlk1ppMVwbaBRA882 rogid:3fwId5DeCqqKqbCFegY4jF9jCdY882 rigid:DQOa1oPIrdlddPvgUBA2FI3sb5M false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S7 uniprotkb:Q726T1 intact:EBI-10087705|ensemblbacteria:AAS97500 intact:EBI-10069904|ensemblbacteria:AAS97496 psi-mi:pta_desvh(display_long)|uniprotkb:Phosphotransacetylase(gene name synonym)|uniprotkb:DVU_3029(locus name)|uniprotkb:pta(gene name)|psi-mi:pta(display_short) psi-mi:q726t1_desvh(display_long)|uniprotkb:poR(gene name)|psi-mi:poR(display_short)|uniprotkb:Pyruvate synthase(gene name synonym)|uniprotkb:DVU_3025(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762120 author score:0.471 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042112|interpro:IPR042113|interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR004614(Phosphate acetyltransferase)|interpro:IPR010766(DRTGG)|interpro:IPR016475(Phosphate acetyltransferase, bacteria)|interpro:IPR027417|interpro:IPR028979|refseq:YP_012240.1|refseq:WP_010940288.1|ensemblbacteria:AAS97500(transcript)|ensemblbacteria:DVU_3029(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006085"(acetyl-CoA biosynthetic process)|go:"GO:0008959"(phosphate acetyltransferase activity) interpro:IPR033412|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR011895("Pyruvate:ferredoxin (flavodoxin) oxidoreductase")|interpro:IPR017896|interpro:IPR017900|interpro:IPR019456|interpro:IPR019752|interpro:IPR029061|refseq:YP_012236.1|refseq:WP_010940284.1|ensemblbacteria:AAS97496(transcript)|ensemblbacteria:DVU_3025(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0019164"(pyruvate synthase activity)|go:"GO:0022900"(electron transport chain)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037112 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:M0XYPsqslSPJ4v3xp2CUfwXMxuA882 rogid:HjxGbqzD+v4RlI5kNJh2g0o5mEI882 rigid:qaIqahmnuNyrswDRBTj1CgFa7xc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S7 uniprotkb:Q72F04 intact:EBI-10087705|ensemblbacteria:AAS97500 intact:EBI-11759983|ensemblbacteria:AAS94897 psi-mi:pta_desvh(display_long)|uniprotkb:Phosphotransacetylase(gene name synonym)|uniprotkb:DVU_3029(locus name)|uniprotkb:pta(gene name)|psi-mi:pta(display_short) psi-mi:q72f04_desvh(display_long)|uniprotkb:DVU_0414(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762113 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042112|interpro:IPR042113|interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR004614(Phosphate acetyltransferase)|interpro:IPR010766(DRTGG)|interpro:IPR016475(Phosphate acetyltransferase, bacteria)|interpro:IPR027417|interpro:IPR028979|refseq:YP_012240.1|refseq:WP_010940288.1|ensemblbacteria:AAS97500(transcript)|ensemblbacteria:DVU_3029(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006085"(acetyl-CoA biosynthetic process)|go:"GO:0008959"(phosphate acetyltransferase activity) refseq:WP_010937721.1|refseq:YP_009638.1|interpro:IPR012301(Malic enzyme, N-terminal)|interpro:IPR012302(Malic enzyme, NAD-binding)|interpro:IPR001891(Malic oxidoreductase)|ensemblbacteria:AAS94897(transcript)|ensemblbacteria:DVU_0414(gene)|go:"GO:0004471"("malate dehydrogenase (decarboxylating) (NAD+) activity")|go:"GO:0046872"(metal ion binding)|go:"GO:0051287"(NAD binding)|interpro:IPR036291|interpro:IPR037062 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:M0XYPsqslSPJ4v3xp2CUfwXMxuA882 rogid:tyjQljAZuonms9jEzE0WynRtRrM882 rigid:CjK5g9HzkP7YddMRQVofOSdlEYE false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726U6 uniprotkb:Q726V2 intact:EBI-11762088|ensemblbacteria:AAS97481 intact:EBI-10070078|ensemblbacteria:AAS97475 psi-mi:q726u6_desvh(display_long)|uniprotkb:DVU_3010(locus name) psi-mi:q726v2_desvh(display_long)|uniprotkb:DVU_3004(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762106 author score:0.58 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940269.1|refseq:YP_012221.1|interpro:IPR000653(DegT/DnrJ/EryC1/StrS aminotransferase)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|ensemblbacteria:AAS97481(transcript)|ensemblbacteria:DVU_3010(gene)|go:"GO:0008483"(transaminase activity) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR023885|interpro:IPR029044|refseq:YP_012215.1|ensemblbacteria:AAS97475(transcript)|ensemblbacteria:DVU_3004(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:72FWvwcxpIjGMV0Kk8kIHGdLgh4882 rogid:KcIyHzFmrnxqtKOrnN9LJXpRids882 rigid:NEUGN6d89mvs+CX/azHgSnXpLA4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726U6 uniprotkb:Q726V0 intact:EBI-11762088|ensemblbacteria:AAS97481 intact:EBI-10070649|ensemblbacteria:AAS97477 psi-mi:q726u6_desvh(display_long)|uniprotkb:DVU_3010(locus name) psi-mi:q726v0_desvh(display_long)|uniprotkb:DVU_3006(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762099 author score:0.731 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940269.1|refseq:YP_012221.1|interpro:IPR000653(DegT/DnrJ/EryC1/StrS aminotransferase)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|ensemblbacteria:AAS97481(transcript)|ensemblbacteria:DVU_3010(gene)|go:"GO:0008483"(transaminase activity) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR025714|interpro:IPR029044|interpro:IPR029063|refseq:YP_012217.1|refseq:WP_010940265.1|ensemblbacteria:AAS97477(transcript)|ensemblbacteria:DVU_3006(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:72FWvwcxpIjGMV0Kk8kIHGdLgh4882 rogid:mYM7lchB09rIDxmq89XTGcpMboo882 rigid:AWt3T9DJoELMkweRPD+k+Bm5UTA false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726U7 uniprotkb:Q726V1 intact:EBI-11762048|ensemblbacteria:AAS97480 intact:EBI-10087759|ensemblbacteria:AAS97476 psi-mi:q726u7_desvh(display_long)|uniprotkb:DVU_3009(locus name) psi-mi:q726v1_desvh(display_long)|uniprotkb:DVU_3005(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762081 author score:0.607 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940268.1|refseq:YP_012220.1|interpro:IPR023885|interpro:IPR007197(Radical SAM)|ensemblbacteria:AAS97480(transcript)|ensemblbacteria:DVU_3009(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR034391 interpro:IPR000653(DegT/DnrJ/EryC1/StrS aminotransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_012216.1|refseq:WP_010940264.1|ensemblbacteria:AAS97476(transcript)|ensemblbacteria:DVU_3005(gene)|go:"GO:0008483"(transaminase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:qk3KlH+3F84blpwbBx5WQYEFKLY882 rogid:E/c5frXcx5GoC1Wa1DokTFt1Zw8882 rigid:It0cB1DPPoVFgQ3IhdZAnrux1iE false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726U7 uniprotkb:Q726U9 intact:EBI-11762048|ensemblbacteria:AAS97480 intact:EBI-11762067|ensemblbacteria:AAS97478 psi-mi:q726u7_desvh(display_long)|uniprotkb:DVU_3009(locus name) psi-mi:q726u9_desvh(display_long)|uniprotkb:DVU_3007(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762074 author score:0.542 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940268.1|refseq:YP_012220.1|interpro:IPR023885|interpro:IPR007197(Radical SAM)|ensemblbacteria:AAS97480(transcript)|ensemblbacteria:DVU_3009(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR034391 refseq:WP_010940266.1|refseq:YP_012218.1|interpro:IPR011990(Tetratricopeptide-like helical)|ensemblbacteria:AAS97478(transcript)|ensemblbacteria:DVU_3007(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:qk3KlH+3F84blpwbBx5WQYEFKLY882 rogid:LdScVJ1JBB4x0FXk9R8Ciz0WWp8882 rigid:ABm3iZ2sKIBWtxJtxTh0Uupo/uc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726U7 uniprotkb:Q726V3 intact:EBI-11762048|ensemblbacteria:AAS97480 intact:EBI-11762036|ensemblbacteria:AAS97474 psi-mi:q726u7_desvh(display_long)|uniprotkb:DVU_3009(locus name) psi-mi:q726v3_desvh(display_long)|uniprotkb:DVU_3003(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762060 author score:0.883 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940268.1|refseq:YP_012220.1|interpro:IPR023885|interpro:IPR007197(Radical SAM)|ensemblbacteria:AAS97480(transcript)|ensemblbacteria:DVU_3009(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR034391 refseq:WP_010940262.1|refseq:YP_012214.1|interpro:IPR023885|interpro:IPR007197(Radical SAM)|ensemblbacteria:AAS97474(transcript)|ensemblbacteria:DVU_3003(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR034391 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:qk3KlH+3F84blpwbBx5WQYEFKLY882 rogid:Y6vvE14T012++d5wmcWNRkZMDCc882 rigid:vfUxno1PCJly8/g1T0TzN9h+wNI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726V0 uniprotkb:Q726V2 intact:EBI-10070649|ensemblbacteria:AAS97477 intact:EBI-10070078|ensemblbacteria:AAS97475 psi-mi:q726v0_desvh(display_long)|uniprotkb:DVU_3006(locus name) psi-mi:q726v2_desvh(display_long)|uniprotkb:DVU_3004(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762029 author score:0.927 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR025714|interpro:IPR029044|interpro:IPR029063|refseq:YP_012217.1|refseq:WP_010940265.1|ensemblbacteria:AAS97477(transcript)|ensemblbacteria:DVU_3006(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR023885|interpro:IPR029044|refseq:YP_012215.1|ensemblbacteria:AAS97475(transcript)|ensemblbacteria:DVU_3004(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:mYM7lchB09rIDxmq89XTGcpMboo882 rogid:KcIyHzFmrnxqtKOrnN9LJXpRids882 rigid:VFV0NK6sgHLH408saU8yghf9PGk false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726W0 uniprotkb:Q726W1 intact:EBI-11762012|ensemblbacteria:AAS97467 intact:EBI-10066006|ensemblbacteria:AAS97466 psi-mi:q726w0_desvh(display_long)|uniprotkb:DVU_2996(locus name) psi-mi:q726w1_desvh(display_long)|uniprotkb:DVU_2995(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762022 author score:0.937 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940255.1|refseq:YP_012207.1|interpro:IPR001509(NAD-dependent epimerase/dehydratase)|ensemblbacteria:AAS97467(transcript)|ensemblbacteria:DVU_2996(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR036291 refseq:YP_012206.1|refseq:WP_010940254.1|ensemblbacteria:AAS97466(transcript)|ensemblbacteria:DVU_2995(gene)|go:"GO:0016757"(glycosyltransferase activity)|interpro:IPR001296(Glycosyl transferase, group 1) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:KZu+bzhV7E3THd9RYWjb8CLCbuk882 rogid:71gG1F/+ws72rW/2wuMArtxu0Yk882 rigid:d7vPWCXV0StWwt/2ZXhgzVxgXto false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726W6 uniprotkb:Q72DH8 intact:EBI-11761993|ensemblbacteria:AAS97461 intact:EBI-10070167|ensemblbacteria:AAS95431 psi-mi:q726w6_desvh(display_long)|uniprotkb:moeA(gene name)|psi-mi:moeA(display_short)|uniprotkb:DVU_2990(locus name) psi-mi:q72dh8_desvh(display_long)|uniprotkb:DVU_0951(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762005 author score:0.903 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038987|refseq:WP_010940249.1|refseq:YP_012201.1|interpro:IPR001453(Molybdopterin binding)|interpro:IPR005110(MoeA, N-terminal, domain I and II)|interpro:IPR024370|ensemblbacteria:AAS97461(transcript)|ensemblbacteria:DVU_2990(gene)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0032324"(molybdopterin cofactor biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0061599"(molybdopterin molybdotransferase activity)|interpro:IPR036135|interpro:IPR036425|interpro:IPR036688 interpro:IPR038987|interpro:IPR001453(Molybdopterin binding)|interpro:IPR005110(MoeA, N-terminal, domain I and II)|interpro:IPR005111(MoeA, C-terminal, domain IV)|refseq:YP_010172.1|refseq:WP_010938250.1|ensemblbacteria:AAS95431(transcript)|ensemblbacteria:DVU_0951(gene)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0032324"(molybdopterin cofactor biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0061599"(molybdopterin molybdotransferase activity)|interpro:IPR036135|interpro:IPR036425|interpro:IPR036688 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:RbOKZxLUc14tguK5PlVzBH3Wims882 rogid:jfLOJBXgGRfEVSuZy4qxSuhUr88882 rigid:y2o2ra/Z3pz2e4WLROKLhlI4x2g false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726X1 uniprotkb:Q726X4 intact:EBI-10065144|ensemblbacteria:AAS97456 intact:EBI-10066095|ensemblbacteria:AAS97453 psi-mi:leu3_desvh(display_long)|uniprotkb:3-IPM-DH(gene name synonym)|uniprotkb:Beta-IPM dehydrogenase(gene name synonym)|uniprotkb:DVU_2985(locus name)|uniprotkb:leuB(gene name)|psi-mi:leuB(display_short) psi-mi:leuc_desvh(display_long)|uniprotkb:Alpha-IPM isomerase(gene name synonym)|uniprotkb:Isopropylmalate isomerase(gene name synonym)|uniprotkb:DVU_2982(locus name)|uniprotkb:leuC(gene name)|psi-mi:leuC(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761986 author score:0.979 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004429(3-isopropylmalate dehydrogenase)|interpro:IPR019818|interpro:IPR024084|refseq:YP_012196.1|refseq:WP_010940244.1|ensemblbacteria:AAS97456(transcript)|ensemblbacteria:DVU_2985(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003862"(3-isopropylmalate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|go:"GO:0051287"(NAD binding) interpro:IPR033941|interpro:IPR001030(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha)|interpro:IPR006251(Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup)|interpro:IPR011826(Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic)|interpro:IPR015931(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3)|interpro:IPR018136|refseq:YP_012193.1|refseq:WP_010940241.1|ensemblbacteria:AAS97453(transcript)|ensemblbacteria:DVU_2982(gene)|go:"GO:0003861"(3-isopropylmalate dehydratase activity)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036008 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:eQSphPmKm1cowcE+Wb4axb7nrM0882 rogid:pLJ37zhPWm2JON8lTI0HnHv1Dy8882 rigid:HlxNZ6y4cXAEPdcdLuTXI+iJIM8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726X3 uniprotkb:Q726X4 intact:EBI-10066099|ensemblbacteria:AAS97454 intact:EBI-10066095|ensemblbacteria:AAS97453 psi-mi:leud_desvh(display_long)|uniprotkb:Alpha-IPM isomerase(gene name synonym)|uniprotkb:Isopropylmalate isomerase(gene name synonym)|uniprotkb:DVU_2983(locus name)|uniprotkb:leuD(gene name)|psi-mi:leuD(display_short) psi-mi:leuc_desvh(display_long)|uniprotkb:Alpha-IPM isomerase(gene name synonym)|uniprotkb:Isopropylmalate isomerase(gene name synonym)|uniprotkb:DVU_2982(locus name)|uniprotkb:leuC(gene name)|psi-mi:leuC(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761979 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033940|interpro:IPR000573(Aconitase A/isopropylmalate dehydratase small subunit, swivel)|interpro:IPR011827(3-isopropylmalate dehydratase, small subunit, subgroup)|interpro:IPR015928(Aconitase/3-isopropylmalate dehydratase, swivel)|refseq:YP_012194.1|refseq:WP_010940242.1|ensemblbacteria:AAS97454(transcript)|ensemblbacteria:DVU_2983(gene)|go:"GO:0003861"(3-isopropylmalate dehydratase activity)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process) interpro:IPR033941|interpro:IPR001030(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha)|interpro:IPR006251(Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup)|interpro:IPR011826(Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic)|interpro:IPR015931(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3)|interpro:IPR018136|refseq:YP_012193.1|refseq:WP_010940241.1|ensemblbacteria:AAS97453(transcript)|ensemblbacteria:DVU_2982(gene)|go:"GO:0003861"(3-isopropylmalate dehydratase activity)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036008 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:6v9ADe8X/uNq0OIGkaw+jevsVis882 rogid:pLJ37zhPWm2JON8lTI0HnHv1Dy8882 rigid:xiPyMko7AS5o3ttmdgzO208Nfak false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726X4 uniprotkb:Q726X5 intact:EBI-10066095|ensemblbacteria:AAS97453 intact:EBI-11761958|ensemblbacteria:AAS97452 psi-mi:leuc_desvh(display_long)|uniprotkb:Alpha-IPM isomerase(gene name synonym)|uniprotkb:Isopropylmalate isomerase(gene name synonym)|uniprotkb:DVU_2982(locus name)|uniprotkb:leuC(gene name)|psi-mi:leuC(display_short) psi-mi:q726x5_desvh(display_long)|uniprotkb:leuA(gene name)|psi-mi:leuA(display_short)|uniprotkb:Alpha-IPM synthase(gene name synonym)|uniprotkb:Alpha-isopropylmalate synthase(gene name synonym)|uniprotkb:DVU_2981(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761972 author score:0.783 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033941|interpro:IPR001030(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha)|interpro:IPR006251(Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup)|interpro:IPR011826(Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic)|interpro:IPR015931(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3)|interpro:IPR018136|refseq:YP_012193.1|refseq:WP_010940241.1|ensemblbacteria:AAS97453(transcript)|ensemblbacteria:DVU_2982(gene)|go:"GO:0003861"(3-isopropylmalate dehydratase activity)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036008 refseq:WP_010940240.1|refseq:YP_012192.1|interpro:IPR013709("2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain")|interpro:IPR002034(Alpha-isopropylmalate/homocitrate synthase, conserved site)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR005671(Bacterial 2-isopropylmalate synthase)|interpro:IPR000891(Pyruvate carboxyltransferase)|ensemblbacteria:AAS97452(transcript)|ensemblbacteria:DVU_2981(gene)|go:"GO:0003852"(2-isopropylmalate synthase activity)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|interpro:IPR036230 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:pLJ37zhPWm2JON8lTI0HnHv1Dy8882 rogid:34ad29tg7r6ljfTXq21OAfwuU2E882 rigid:rbIqkReFXyfhip3F3iyqxZZY35M false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727B7 uniprotkb:Q72AR1 intact:EBI-10068027|ensemblbacteria:AAS97410 intact:EBI-10068033|ensemblbacteria:AAS96407 psi-mi:q727b7_desvh(display_long)|uniprotkb:DVU_2938(locus name) psi-mi:q72ar1_desvh(display_long)|uniprotkb:DVU_1931(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761951 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002708(Protein of unknown function DUF39)|refseq:YP_012150.1|refseq:WP_010940198.1|ensemblbacteria:AAS97410(transcript)|ensemblbacteria:DVU_2938(gene) interpro:IPR017896|interpro:IPR017900|interpro:IPR018449|refseq:YP_011148.1|refseq:WP_010939217.1|ensemblbacteria:AAS96407(transcript)|ensemblbacteria:DVU_1931(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Yh3Az4Z6+Fja24xtMu0M+SurKtI882 rogid:37jX9UuPSQSj+NomyPZU1IsJ7rk882 rigid:UOsJUIQLncXuurFf4CYkm1AeOz8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q727C7 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761944 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120 interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 rigid:X5IftPlE0bhE/gjeOZyrpI2CGJk false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q72CF4 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761937 author score:0.94 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120 interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 rigid:on583g1fA7bUjgfgH1ceQ+V2En0 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C7 uniprotkb:Q72CF4 intact:EBI-10066295|ensemblbacteria:AAS97400 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11761930 author score:0.91 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034 interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 rigid:cWu2FKvU6OJnzg1u7Wq9y0ZPgPs false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725I2 uniprotkb:Q72DS2 intact:EBI-10070032|ensemblbacteria:AAS97637 intact:EBI-10069393|ensemblbacteria:AAS95337 psi-mi:ahbb_desvh(display_long)|uniprotkb:ahbB(gene name)|psi-mi:ahbB(display_short)|uniprotkb:DVU_3167(locus name) psi-mi:q72ds2_desvh(display_long)|uniprotkb:DVU_0857(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762209 author score:0.996 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR019888|refseq:YP_012377.1|refseq:WP_010940425.1|ensemblbacteria:AAS97637(transcript)|ensemblbacteria:DVU_3167(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016829"(lyase activity)|interpro:IPR040523|interpro:IPR036390 interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR023885|refseq:YP_010078.1|interpro:IPR030894|refseq:WP_010938157.1|ensemblbacteria:AAS95337(transcript)|ensemblbacteria:DVU_0857(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034479|interpro:IPR017200(Coenzyme PQQ biosynthesis protein E) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:KZz0Z88+2J4GOyInp6o0mhmhEMM882 rogid:g+y+xJ7Wd0gLKuQHBvSJDQ1tDow882 rigid:IdSfof1wzaUxbBd6hiaarA9vCBY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726F2 uniprotkb:Q728D5 intact:EBI-11762185|ensemblbacteria:AAS97626 intact:EBI-11761743|ensemblbacteria:AAS97140 psi-mi:q726f2_desvh(display_long)|uniprotkb:glmS(gene name)|psi-mi:glmS(display_short)|uniprotkb:D-fructose-6-phosphate amidotransferase(gene name synonym)|uniprotkb:GFAT(gene name synonym)|uniprotkb:Glucosamine-6-phosphate synthase(gene name synonym)|uniprotkb:Hexosephosphate aminotransferase(gene name synonym)|uniprotkb:L-glutamine--D-fructose-6-phosphate amidotransferase(gene name synonym)|uniprotkb:DVU_3156(locus name) psi-mi:glmu_desvh(display_long)|uniprotkb:glmU(gene name)|psi-mi:glmU(display_short)|uniprotkb:DVU_2668(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762202 author score:0.775 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940414.1|refseq:YP_012366.1|interpro:IPR017932|interpro:IPR005855(Glucosamine-fructose-6-phosphate aminotransferase, isomerising)|interpro:IPR029055|interpro:IPR001347("Sugar isomerase (SIS)")|ensemblbacteria:AAS97626(transcript)|ensemblbacteria:DVU_3156(gene)|go:"GO:0004360"("glutamine-fructose-6-phosphate transaminase (isomerizing) activity")|go:"GO:0005737"(cytoplasm)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0097367"(carbohydrate derivative binding)|go:"GO:1901137"(carbohydrate derivative biosynthetic process)|interpro:IPR035466|interpro:IPR035490 interpro:IPR038009|refseq:WP_010939937.1|refseq:YP_011880.1|interpro:IPR005882(UDP-N-acetylglucosamine pyrophosphorylase)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR018357|interpro:IPR025877|interpro:IPR029044|interpro:IPR011004(Trimeric LpxA-like)|ensemblbacteria:AAS97140(transcript)|ensemblbacteria:DVU_2668(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0003977"(UDP-N-acetylglucosamine diphosphorylase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006048"(UDP-N-acetylglucosamine biosynthetic process)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0019134"(glucosamine-1-phosphate N-acetyltransferase activity)|go:"GO:0071555"(cell wall organization) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:MqRVo8fwnOpjbxcpz9HBl/4Hxic882 rogid:AQkVmUlLMOPGOZAwSaFXP+/FNWk882 rigid:R4ImXsXwS0d/G6hM8eEeeup61YI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726J4 uniprotkb:Q72FQ1 intact:EBI-10065640|ensemblbacteria:AAS97584 intact:EBI-10065635|ensemblbacteria:AAS94646 psi-mi:cara_desvh(display_long)|uniprotkb:Carbamoyl-phosphate synthetase glutamine chain(gene name synonym)|uniprotkb:DVU_3113(locus name)|uniprotkb:carA(gene name)|psi-mi:carA(display_short) psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762178 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002474(Carbamoyl phosphate synthase, small subunit, N-terminal)|interpro:IPR006274(Carbamoyl phosphate synthase, small subunit)|interpro:IPR017926|interpro:IPR029062|refseq:YP_012324.1|refseq:WP_010940372.1|ensemblbacteria:DVU_3113(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|ensemblbacteria:AAS97584(transcript)|interpro:IPR035686|interpro:IPR036480 interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:X81Lv9JQcjmM+HsJv1TePNg/3i0882 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 rigid:Uj0ewrZ5PRS1vHHVQhJ6jpYeUJY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726J4 uniprotkb:Q727F4 intact:EBI-10065640|ensemblbacteria:AAS97584 intact:EBI-10066379|ensemblbacteria:AAS97373 psi-mi:cara_desvh(display_long)|uniprotkb:Carbamoyl-phosphate synthetase glutamine chain(gene name synonym)|uniprotkb:DVU_3113(locus name)|uniprotkb:carA(gene name)|psi-mi:carA(display_short) psi-mi:pyrb_desvh(display_long)|uniprotkb:Aspartate transcarbamylase(gene name synonym)|uniprotkb:DVU_2901(locus name)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762171 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002474(Carbamoyl phosphate synthase, small subunit, N-terminal)|interpro:IPR006274(Carbamoyl phosphate synthase, small subunit)|interpro:IPR017926|interpro:IPR029062|refseq:YP_012324.1|refseq:WP_010940372.1|ensemblbacteria:DVU_3113(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|ensemblbacteria:AAS97584(transcript)|interpro:IPR035686|interpro:IPR036480 interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|refseq:YP_012113.1|refseq:WP_010940161.1|ensemblbacteria:AAS97373(transcript)|ensemblbacteria:DVU_2901(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR036901 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:X81Lv9JQcjmM+HsJv1TePNg/3i0882 rogid:W13RREVUawgRc7XxXkARSwTUTDA882 rigid:Q0fexFEUMAo+lToWljGV+4V8TME false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q726S4 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762164 author score:0.903 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171 interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rigid:IkaedDuwqz2QBwFkloMKC/z/+I4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q72B55 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-11762150|ensemblbacteria:AAS96260 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q72b55_desvh(display_long)|uniprotkb:DVU_1783(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762157 author score:0.991 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171 refseq:WP_010939071.1|refseq:YP_011001.1|interpro:IPR004017(Cysteine-rich region, CCG)|ensemblbacteria:AAS96260(transcript)|ensemblbacteria:DVU_1783(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:J7cxuvBKNOtPtgiliI14fNiWfcc882 rigid:GvEQ2q4SwnhH9mei1jhcmaGP/lI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S6 uniprotkb:Q726S7 intact:EBI-11762127|ensemblbacteria:AAS97501 intact:EBI-10087705|ensemblbacteria:AAS97500 psi-mi:acka_desvh(display_long)|uniprotkb:ackA(gene name)|psi-mi:ackA(display_short)|uniprotkb:Acetokinase(gene name synonym)|uniprotkb:DVU_3030(locus name) psi-mi:pta_desvh(display_long)|uniprotkb:Phosphotransacetylase(gene name synonym)|uniprotkb:DVU_3029(locus name)|uniprotkb:pta(gene name)|psi-mi:pta(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762143 author score:0.971 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940289.1|refseq:YP_012241.1|interpro:IPR004372(Acetate kinase)|interpro:IPR000890(Acetate and butyrate kinase)|interpro:IPR023865|ensemblbacteria:AAS97501(transcript)|ensemblbacteria:DVU_3030(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006082"(organic acid metabolic process)|go:"GO:0006085"(acetyl-CoA biosynthetic process)|go:"GO:0008776"(acetate kinase activity)|interpro:IPR043129 interpro:IPR042112|interpro:IPR042113|interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR004614(Phosphate acetyltransferase)|interpro:IPR010766(DRTGG)|interpro:IPR016475(Phosphate acetyltransferase, bacteria)|interpro:IPR027417|interpro:IPR028979|refseq:YP_012240.1|refseq:WP_010940288.1|ensemblbacteria:AAS97500(transcript)|ensemblbacteria:DVU_3029(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006085"(acetyl-CoA biosynthetic process)|go:"GO:0008959"(phosphate acetyltransferase activity) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:67O3g4C3KYPKpK2+/zRtvCfu1a8882 rogid:M0XYPsqslSPJ4v3xp2CUfwXMxuA882 rigid:kuaUQ/3oygNcu/V8mQFpkmHzLs0 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725I0 uniprotkb:Q727V6 intact:EBI-11762253|ensemblbacteria:AAS97639 intact:EBI-11762237|ensemblbacteria:AAS97220 psi-mi:q725i0_desvh(display_long)|uniprotkb:cbiG(gene name)|psi-mi:cbiG(display_short)|uniprotkb:DVU_3169(locus name) psi-mi:q727v6_desvh(display_long)|uniprotkb:cobM(gene name)|psi-mi:cobM(display_short)|uniprotkb:DVU_2748(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762264 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940427.1|refseq:YP_012379.1|interpro:IPR021745|interpro:IPR021744|interpro:IPR002750("Cobalamin (vitamin B12) biosynthesis CbiG, core")|interpro:IPR038029|ensemblbacteria:AAS97639(transcript)|ensemblbacteria:DVU_3169(gene)|go:"GO:0009236"(cobalamin biosynthetic process)|interpro:IPR036518 refseq:YP_011960.1|interpro:IPR000878(Tetrapyrrole methylase)|interpro:IPR014777(Tetrapyrrole methylase, subdomain 1)|interpro:IPR014776(Tetrapyrrole methylase, subdomain 2)|interpro:IPR006362("Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core")|interpro:IPR003043(Uroporphiryn-III C-methyltransferase, conserved site)|ensemblbacteria:AAS97220(transcript)|ensemblbacteria:DVU_2748(gene)|go:"GO:0009236"(cobalamin biosynthetic process)|go:"GO:0032259"(methylation)|go:"GO:0046026"(precorrin-4 C11-methyltransferase activity)|interpro:IPR035996 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:NoZoPp/mox735XcGr0Z73aAw4qM882 rogid:Y6dNTamS4mqUkerX+mZu1b8LbEU882 rigid:kTYfWqYAAGaYvdeWvmj3bokIEbo false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725I1 uniprotkb:Q72E45 intact:EBI-10072079|ensemblbacteria:AAS97638 intact:EBI-11760325|ensemblbacteria:AAS95214 psi-mi:gsa_desvh(display_long)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym)|uniprotkb:DVU_3168(locus name)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short) psi-mi:q72e45_desvh(display_long)|uniprotkb:Uroporphyrinogen-III C-methyltransferase(gene name synonym)|uniprotkb:DVU_0734(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762230 author score:0.685 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_012378.1|refseq:WP_010940426.1|ensemblbacteria:AAS97638(transcript)|ensemblbacteria:DVU_3168(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity) interpro:IPR000878(Tetrapyrrole methylase)|interpro:IPR003754(Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)|interpro:IPR014777(Tetrapyrrole methylase, subdomain 1)|interpro:IPR014776(Tetrapyrrole methylase, subdomain 2)|interpro:IPR006366(Uroporphyrin-III C-methyltransferase, C-terminal)|interpro:IPR003043(Uroporphiryn-III C-methyltransferase, conserved site)|refseq:WP_010938035.1|refseq:YP_009955.1|ensemblbacteria:AAS95214(transcript)|ensemblbacteria:DVU_0734(gene)|go:"GO:0004851"(uroporphyrin-III C-methyltransferase activity)|go:"GO:0004852"(uroporphyrinogen-III synthase activity)|go:"GO:0019354"(siroheme biosynthetic process)|go:"GO:0032259"(methylation)|interpro:IPR035996|interpro:IPR036108 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:favigLRkFM2wUwADh0JCloRp2DQ882 rogid:KCprz+JEB3MllI7ProDOCaAXQBY882 rigid:sYJAaQblJAMS5Pyh7t4UDDR11qQ false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725I2 uniprotkb:Q72DS4 intact:EBI-10070032|ensemblbacteria:AAS97637 intact:EBI-11760348|ensemblbacteria:AAS95335 psi-mi:ahbb_desvh(display_long)|uniprotkb:ahbB(gene name)|psi-mi:ahbB(display_short)|uniprotkb:DVU_3167(locus name) psi-mi:ahbd_desvh(display_long)|uniprotkb:ahbD(gene name)|psi-mi:ahbD(display_short)|uniprotkb:DVU_0855(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762223 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR019888|refseq:YP_012377.1|refseq:WP_010940425.1|ensemblbacteria:AAS97637(transcript)|ensemblbacteria:DVU_3167(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016829"(lyase activity)|interpro:IPR040523|interpro:IPR036390 refseq:YP_010076.1|interpro:IPR023885|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR030896|ensemblbacteria:AAS95335(transcript)|ensemblbacteria:DVU_0855(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034391|interpro:IPR017200(Coenzyme PQQ biosynthesis protein E) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:KZz0Z88+2J4GOyInp6o0mhmhEMM882 rogid:erfwyDVFNhstzuFcBEeLF7srg4k882 rigid:0+QHdA180LXNjaM+af3pJDTh2J4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725I2 uniprotkb:Q72DS5 intact:EBI-10070032|ensemblbacteria:AAS97637 intact:EBI-10070029|ensemblbacteria:AAS95334 psi-mi:ahbb_desvh(display_long)|uniprotkb:ahbB(gene name)|psi-mi:ahbB(display_short)|uniprotkb:DVU_3167(locus name) psi-mi:ahba_desvh(display_long)|uniprotkb:DVU_0854(locus name)|uniprotkb:ahbA(gene name)|psi-mi:ahbA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762216 author score:0.842 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR019888|refseq:YP_012377.1|refseq:WP_010940425.1|ensemblbacteria:AAS97637(transcript)|ensemblbacteria:DVU_3167(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016829"(lyase activity)|interpro:IPR040523|interpro:IPR036390 interpro:IPR000485(Transcription regulator, AsnC/Lrp)|refseq:YP_010075.1|refseq:WP_010938154.1|ensemblbacteria:AAS95334(transcript)|ensemblbacteria:DVU_0854(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016829"(lyase activity)|go:"GO:0043565"(sequence-specific DNA binding)|interpro:IPR040523|interpro:IPR036388|interpro:IPR036390 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:KZz0Z88+2J4GOyInp6o0mhmhEMM882 rogid:qaiFlK+73tflzG6JkOBnw818l2E882 rigid:LwvRXjIA1ZSKxziRCBYer3gjsyI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S5 uniprotkb:Q725S6 intact:EBI-10065269|ensemblbacteria:AAS97818 intact:EBI-10065263|ensemblbacteria:AAS97817 psi-mi:q725s5_desvh(display_long)|uniprotkb:DVU_3349(locus name) psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762405 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033412|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|refseq:YP_012558.1|refseq:WP_010940605.1|go:"GO:0016491"(oxidoreductase activity)|ensemblbacteria:AAS97818(transcript)|ensemblbacteria:DVU_3349(gene) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:B9/pfTeEbS+8jOfuzf66hNvqUAY882 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 rigid:pIAoVMsD0QSTiQP1/618aydXcxs false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S5 uniprotkb:Q725S7 intact:EBI-10065269|ensemblbacteria:AAS97818 intact:EBI-10065266|ensemblbacteria:AAS97816 psi-mi:q725s5_desvh(display_long)|uniprotkb:DVU_3349(locus name) psi-mi:q725s7_desvh(display_long)|uniprotkb:DVU_3347(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762398 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033412|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|refseq:YP_012558.1|refseq:WP_010940605.1|go:"GO:0016491"(oxidoreductase activity)|ensemblbacteria:AAS97818(transcript)|ensemblbacteria:DVU_3349(gene) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_012556.1|refseq:WP_010940603.1|ensemblbacteria:AAS97816(transcript)|ensemblbacteria:DVU_3347(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:B9/pfTeEbS+8jOfuzf66hNvqUAY882 rogid:Civ/ah8AKETrJlNyqmunLGSpe1M882 rigid:ks+xfM1H808+5Z+77zoAdRY/pjs false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S6 uniprotkb:Q725S7 intact:EBI-10065263|ensemblbacteria:AAS97817 intact:EBI-10065266|ensemblbacteria:AAS97816 psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:q725s7_desvh(display_long)|uniprotkb:DVU_3347(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762391 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_012556.1|refseq:WP_010940603.1|ensemblbacteria:AAS97816(transcript)|ensemblbacteria:DVU_3347(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 rogid:Civ/ah8AKETrJlNyqmunLGSpe1M882 rigid:e/jykN24/ci7iyrQciuVoeY/ptE false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725V9 uniprotkb:Q727F3 intact:EBI-10065362|ensemblbacteria:AAS97784 intact:EBI-10066383|ensemblbacteria:AAS97374 psi-mi:q725v9_desvh(display_long)|uniprotkb:DVU_3316(locus name)|uniprotkb:pyrD(gene name)|psi-mi:pyrD(display_short) psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762384 author score:0.995 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940572.1|interpro:IPR033888|interpro:IPR001295(Dihydroorotate dehydrogenase, core)|interpro:IPR005720(Dihydroorotate dehydrogenase, class 1, core)|interpro:IPR012135(Dihydroorotate dehydrogenase, classes 1 and 2)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024920|refseq:YP_012524.1|ensemblbacteria:AAS97784(transcript)|ensemblbacteria:DVU_3316(gene)|go:"GO:0004152"(dihydroorotate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:s+GZoJbZ1WbnwValE/o98ek0FcA882 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 rigid:jfiK3k77UndNdvHoosO4dWzJPx8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725V9 uniprotkb:Q729F2 intact:EBI-10065362|ensemblbacteria:AAS97784 intact:EBI-10067174|ensemblbacteria:AAS96872 psi-mi:q725v9_desvh(display_long)|uniprotkb:DVU_3316(locus name)|uniprotkb:pyrD(gene name)|psi-mi:pyrD(display_short) psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762377 author score:0.894 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940572.1|interpro:IPR033888|interpro:IPR001295(Dihydroorotate dehydrogenase, core)|interpro:IPR005720(Dihydroorotate dehydrogenase, class 1, core)|interpro:IPR012135(Dihydroorotate dehydrogenase, classes 1 and 2)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024920|refseq:YP_012524.1|ensemblbacteria:AAS97784(transcript)|ensemblbacteria:DVU_3316(gene)|go:"GO:0004152"(dihydroorotate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:s+GZoJbZ1WbnwValE/o98ek0FcA882 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 rigid:2KnHJ/NMjYT4kJpmuUXlRedFrf0 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725V9 uniprotkb:Q728X6 intact:EBI-10065362|ensemblbacteria:AAS97784 intact:EBI-11761880|ensemblbacteria:AAS96948 psi-mi:q725v9_desvh(display_long)|uniprotkb:DVU_3316(locus name)|uniprotkb:pyrD(gene name)|psi-mi:pyrD(display_short) psi-mi:q728x6_desvh(display_long)|uniprotkb:gltA(gene name)|psi-mi:gltA(display_short)|uniprotkb:DVU_2476(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762370 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940572.1|interpro:IPR033888|interpro:IPR001295(Dihydroorotate dehydrogenase, core)|interpro:IPR005720(Dihydroorotate dehydrogenase, class 1, core)|interpro:IPR012135(Dihydroorotate dehydrogenase, classes 1 and 2)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024920|refseq:YP_012524.1|ensemblbacteria:AAS97784(transcript)|ensemblbacteria:DVU_3316(gene)|go:"GO:0004152"(dihydroorotate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process) refseq:WP_010939746.1|refseq:YP_011688.1|interpro:IPR028261|interpro:IPR023753|interpro:IPR006004("Glutamate synthase (NADPH), homotetrameric")|interpro:IPR009051(Alpha-helical ferredoxin)|ensemblbacteria:AAS96948(transcript)|ensemblbacteria:DVU_2476(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:s+GZoJbZ1WbnwValE/o98ek0FcA882 rogid:cIfdj0uDbR5ao0CcR/ZhroPTLEY882 rigid:pcZcN9vBcYWlq6YyJ1MgEJd7fAw false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725V9 uniprotkb:Q725W0 intact:EBI-10065362|ensemblbacteria:AAS97784 intact:EBI-10065366|ensemblbacteria:AAS97783 psi-mi:q725v9_desvh(display_long)|uniprotkb:DVU_3316(locus name)|uniprotkb:pyrD(gene name)|psi-mi:pyrD(display_short) psi-mi:q725w0_desvh(display_long)|uniprotkb:DVU_3315(locus name)|uniprotkb:pyrK(gene name)|psi-mi:pyrK(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762363 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940572.1|interpro:IPR033888|interpro:IPR001295(Dihydroorotate dehydrogenase, core)|interpro:IPR005720(Dihydroorotate dehydrogenase, class 1, core)|interpro:IPR012135(Dihydroorotate dehydrogenase, classes 1 and 2)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024920|refseq:YP_012524.1|ensemblbacteria:AAS97784(transcript)|ensemblbacteria:DVU_3316(gene)|go:"GO:0004152"(dihydroorotate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process) interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|refseq:YP_012523.1|refseq:WP_010940571.1|ensemblbacteria:AAS97783(transcript)|ensemblbacteria:DVU_3315(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:s+GZoJbZ1WbnwValE/o98ek0FcA882 rogid:tbxDfY8mz0HIUuZQfBQn+37c6ag882 rigid:HRuvlZ3p/mvJtPaANT8e5Jqm8F4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726A1 uniprotkb:Q72F96 intact:EBI-10065486|ensemblbacteria:AAS97742 intact:EBI-10071858|ensemblbacteria:AAS94801 psi-mi:q726a1_desvh(display_long)|uniprotkb:DVU_3272(locus name) psi-mi:q72f96_desvh(display_long)|uniprotkb:DVU_0318(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762356 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001440(Tetratricopeptide TPR-1)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|refseq:YP_012482.1|refseq:WP_010940530.1|ensemblbacteria:AAS97742(transcript)|ensemblbacteria:DVU_3272(gene) interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|refseq:YP_009542.1|refseq:WP_010937625.1|ensemblbacteria:AAS94801(transcript)|ensemblbacteria:DVU_0318(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:aCCnvWM114Max4sOCBsN5+djcjA882 rogid:51Gjsgm+sTN0uG7Br7nNjX2ujKc882 rigid:dzrWI/FZLtD3aN+4M7y7A89jFKc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726C8 uniprotkb:Q726C9 intact:EBI-10065537|ensemblbacteria:AAS97733 intact:EBI-10065541|ensemblbacteria:AAS97732 psi-mi:q726c8_desvh(display_long)|uniprotkb:DVU_3263(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:q726c9_desvh(display_long)|uniprotkb:DVU_3262(locus name)|uniprotkb:fdrA(gene name)|psi-mi:fdrA(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762349 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:YP_012473.1|refseq:WP_010940521.1|ensemblbacteria:AAS97733(transcript)|ensemblbacteria:DVU_3263(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036010 interpro:IPR003952(Fumarate reductase/succinate dehydrogenase, FAD-binding site)|interpro:IPR003953(Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal)|interpro:IPR014006(Succinate dehydrogenase or fumarate reductase, flavoprotein subunit)|interpro:IPR015939(Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal)|interpro:IPR027477|refseq:YP_012472.1|refseq:WP_010940520.1|ensemblbacteria:AAS97732(transcript)|ensemblbacteria:DVU_3262(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016627"(oxidoreductase activity, acting on the CH-CH group of donors)|go:"GO:0022900"(electron transport chain)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|interpro:IPR037099 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:KLRaHE5n9ReFozUKlyI8ZT+N7JA882 rogid:3PLDC1TVgGl0L9D3kG1MZ8jIpXo882 rigid:WU5ER5DFq1RPnOlbJljzh/W5kG4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726E1 uniprotkb:Q726B7 intact:EBI-11762328|ensemblbacteria:AAS97682 intact:EBI-10089204|ensemblbacteria:AAS97655 psi-mi:q726e1_desvh(display_long)|uniprotkb:DVU_3212(locus name) psi-mi:q726b7_desvh(display_long)|uniprotkb:roO(gene name)|psi-mi:roO(display_short)|uniprotkb:DVU_3185(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762342 author score:0.82 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940470.1|refseq:YP_012422.1|interpro:IPR023753|interpro:IPR016156(FAD/NAD-linked reductase, dimerisation)|interpro:IPR004099(Pyridine nucleotide-disulphide oxidoreductase, dimerisation)|interpro:IPR001763(Rhodanese-like)|ensemblbacteria:AAS97682(transcript)|ensemblbacteria:DVU_3212(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0045454"(cell redox homeostasis)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|interpro:IPR036873 interpro:IPR001279(Beta-lactamase-like)|interpro:IPR008254(Flavodoxin/nitric oxide synthase)|interpro:IPR016440(Rubredoxin-oxygen oxidoreductase)|interpro:IPR029039|refseq:YP_012395.1|refseq:WP_010940443.1|ensemblbacteria:AAS97655(transcript)|ensemblbacteria:DVU_3185(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036866 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:eoRqJA0rC7M+pud8+2SeSvngPik882 rogid:CNeOdvwXTJMCaulcUy+HDmdOOJY882 rigid:dFVludq8IJkhbOHvD2WFVwBvOuc false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726B8 uniprotkb:Q72BL3 intact:EBI-10090480|ensemblbacteria:AAS97651 intact:EBI-10067950|ensemblbacteria:AAS96100 psi-mi:q726b8_desvh(display_long)|uniprotkb:Formylglycinamide ribonucleotide amidotransferase subunit II(gene name synonym)|uniprotkb:Glutamine amidotransferase PurL(gene name synonym)|uniprotkb:Phosphoribosylformylglycinamidine synthase subunit II(gene name synonym)|uniprotkb:DVU_3181(locus name)|uniprotkb:purL(gene name)|psi-mi:purL(display_short) psi-mi:q72bl3_desvh(display_long)|uniprotkb:DVU_1622(locus name)|uniprotkb:purQ(gene name)|psi-mi:purQ(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762321 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010074(Phosphoribosylformylglycinamidine synthase II)|interpro:IPR010918(AIR synthase related protein, C-terminal)|interpro:IPR016188(PurM, N-terminal-like)|ensemblbacteria:AAS97651(transcript)|ensemblbacteria:DVU_3181(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004642"(phosphoribosylformylglycinamidine synthase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006189"('de novo' IMP biosynthetic process)|interpro:IPR036676|interpro:IPR036921|interpro:IPR041609 interpro:IPR010075(Phosphoribosylformylglycinamidine synthase I)|interpro:IPR029062|refseq:YP_010841.1|refseq:WP_010938913.1|ensemblbacteria:AAS96100(transcript)|ensemblbacteria:DVU_1622(gene)|go:"GO:0004642"(phosphoribosylformylglycinamidine synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0006541"(glutamine metabolic process) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Df0oTrLYAQ2K2fo/qa+Q3OHB9oU882 rogid:pp2k6swe1N7a+9pNsKkXsUHgFww882 rigid:L6op73ZspQUlwJ3i2/H4IygyZiY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726B8 uniprotkb:Q72C78 intact:EBI-10090480|ensemblbacteria:AAS97651 intact:EBI-11760819|ensemblbacteria:AAS95884 psi-mi:q726b8_desvh(display_long)|uniprotkb:Formylglycinamide ribonucleotide amidotransferase subunit II(gene name synonym)|uniprotkb:Glutamine amidotransferase PurL(gene name synonym)|uniprotkb:Phosphoribosylformylglycinamidine synthase subunit II(gene name synonym)|uniprotkb:DVU_3181(locus name)|uniprotkb:purL(gene name)|psi-mi:purL(display_short) psi-mi:q72c78_desvh(display_long)|uniprotkb:AIR synthase(gene name synonym)|uniprotkb:AIRS(gene name synonym)|uniprotkb:Phosphoribosyl-aminoimidazole synthetase(gene name synonym)|uniprotkb:DVU_1406(locus name)|uniprotkb:purM(gene name)|psi-mi:purM(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762314 author score:0.624 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010074(Phosphoribosylformylglycinamidine synthase II)|interpro:IPR010918(AIR synthase related protein, C-terminal)|interpro:IPR016188(PurM, N-terminal-like)|ensemblbacteria:AAS97651(transcript)|ensemblbacteria:DVU_3181(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004642"(phosphoribosylformylglycinamidine synthase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006189"('de novo' IMP biosynthetic process)|interpro:IPR036676|interpro:IPR036921|interpro:IPR041609 refseq:WP_010938699.1|refseq:YP_010625.1|interpro:IPR010918(AIR synthase related protein, C-terminal)|interpro:IPR016188(PurM, N-terminal-like)|interpro:IPR004733(Phosphoribosylformylglycinamidine cyclo-ligase)|ensemblbacteria:AAS95884(transcript)|ensemblbacteria:DVU_1406(gene)|go:"GO:0004641"(phosphoribosylformylglycinamidine cyclo-ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006189"('de novo' IMP biosynthetic process)|interpro:IPR036676|interpro:IPR036921 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Df0oTrLYAQ2K2fo/qa+Q3OHB9oU882 rogid:hCngAil0VkRNs46KvkH1BR1TArg882 rigid:NNyeYBiOpmqQaXcDfNiszTF3h50 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726B8 uniprotkb:Q72FQ2 intact:EBI-10090480|ensemblbacteria:AAS97651 intact:EBI-11762290|ensemblbacteria:AAS94645 psi-mi:q726b8_desvh(display_long)|uniprotkb:Formylglycinamide ribonucleotide amidotransferase subunit II(gene name synonym)|uniprotkb:Glutamine amidotransferase PurL(gene name synonym)|uniprotkb:Phosphoribosylformylglycinamidine synthase subunit II(gene name synonym)|uniprotkb:DVU_3181(locus name)|uniprotkb:purL(gene name)|psi-mi:purL(display_short) psi-mi:q72fq2_desvh(display_long)|uniprotkb:purF(gene name)|psi-mi:purF(display_short)|uniprotkb:Glutamine phosphoribosylpyrophosphate amidotransferase(gene name synonym)|uniprotkb:DVU_0161(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762307 author score:0.588 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010074(Phosphoribosylformylglycinamidine synthase II)|interpro:IPR010918(AIR synthase related protein, C-terminal)|interpro:IPR016188(PurM, N-terminal-like)|ensemblbacteria:AAS97651(transcript)|ensemblbacteria:DVU_3181(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004642"(phosphoribosylformylglycinamidine synthase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006189"('de novo' IMP biosynthetic process)|interpro:IPR036676|interpro:IPR036921|interpro:IPR041609 refseq:WP_010937472.1|refseq:YP_009386.1|interpro:IPR017932|interpro:IPR029055|interpro:IPR029057|interpro:IPR005854(Amidophosphoribosyl transferase)|ensemblbacteria:AAS94645(transcript)|ensemblbacteria:DVU_0161(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004044"(amidophosphoribosyltransferase activity)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0009113"(purine nucleobase biosynthetic process)|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR035584 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:Df0oTrLYAQ2K2fo/qa+Q3OHB9oU882 rogid:OeSuFCobYR1KiVqy9XlCRSwCg+c882 rigid:VoCWkBIhrK9AEXba8bJwio+jAjs false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725J7 uniprotkb:Q72F95 intact:EBI-10066947|ensemblbacteria:AAS97646 intact:EBI-11762271|ensemblbacteria:AAS94802 psi-mi:q725j7_desvh(display_long)|uniprotkb:DVU_3176(locus name) psi-mi:q72f95_desvh(display_long)|uniprotkb:DVU_0319(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762283 author score:0.572 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028359|refseq:YP_012386.1|refseq:WP_010940434.1|ensemblbacteria:AAS97646(transcript)|ensemblbacteria:DVU_3176(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0016616"(oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)|go:"GO:0016628"(oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291 refseq:WP_010937626.1|refseq:YP_009543.1|interpro:IPR001509(NAD-dependent epimerase/dehydratase)|ensemblbacteria:AAS94802(transcript)|ensemblbacteria:DVU_0319(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR036291 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:qKn2i8XqdXdJRHd2gMiUsbAR24Y882 rogid:gPaE2q0f0phqw8e1+Red5QIG+UA882 rigid:kNKTQx2fvIFj41CcCTqVHVVrAx8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WE3 uniprotkb:Q72WE4 intact:EBI-11762552|ensemblbacteria:AAS94453 intact:EBI-11762544|ensemblbacteria:AAS94484 psi-mi:q72we3_desvh(display_long)|uniprotkb:DVUA0146(locus name) psi-mi:q72we4_desvh(display_long)|uniprotkb:DVUA0145(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762561 author score:0.634 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_011176723.1|refseq:YP_009186.1|interpro:IPR010261(Tir chaperone)|ensemblbacteria:AAS94453(transcript)|ensemblbacteria:DVUA0146(gene)|go:"GO:0030254"(protein secretion by the type III secretion system) interpro:IPR022074|refseq:YP_009185.1|ensemblbacteria:AAS94484(transcript)|ensemblbacteria:DVUA0145(gene) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:UXgtjow994KIJsey/AODAVJbNOc882 rogid:+/SByWwEPYXVqK2wHxT4hDOuAyo882 rigid:mQJh6paAned6RHNDNy/WXGCRZuI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WF7 uniprotkb:Q72WF9 intact:EBI-11762529|ensemblbacteria:AAS94333 intact:EBI-11762518|ensemblbacteria:AAS94463 psi-mi:q72wf7_desvh(display_long)|uniprotkb:DVUA0132(locus name) psi-mi:q72wf9_desvh(display_long)|uniprotkb:DVUA0130(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762537 author score:0.996 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_011176709.1|refseq:YP_009172.1|interpro:IPR006482(CRISPR-associated protein TM1801)|interpro:IPR013418(CRISPR-associated protein Csd2)|ensemblbacteria:AAS94333(transcript)|ensemblbacteria:DVUA0132(gene)|go:"GO:0043571"(maintenance of CRISPR repeat elements)|rcsb pdb:7KHA refseq:WP_011176707.1|refseq:YP_009170.1|interpro:IPR021124|interpro:IPR013422(CRISPR-associated protein Cas5)|interpro:IPR010155(CRISPR-associated protein, CT1134)|ensemblbacteria:AAS94463(transcript)|ensemblbacteria:DVUA0130(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0043571"(maintenance of CRISPR repeat elements)|go:"GO:0051607"(defense response to virus)|rcsb pdb:7KHA - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:vQ5YYYj3W2nkK66u/HP9rQU9zao882 rogid:vsMvX+rK5BV/qJ3bgOUuDEZyN1w882 rigid:OHip0Fdz9DXdS+177TSU6BqYfF8 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WL0 uniprotkb:Q72CI8 intact:EBI-11762491|ensemblbacteria:AAS94378 intact:EBI-11760754|ensemblbacteria:AAS95773 psi-mi:q72wl0_desvh(display_long)|uniprotkb:APS kinase(gene name synonym)|uniprotkb:cysC(gene name)|psi-mi:cysC(display_short)|uniprotkb:ATP adenosine-5'-phosphosulfate 3'-phosphotransferase(gene name synonym)|uniprotkb:Adenosine-5'-phosphosulfate kinase(gene name synonym)|uniprotkb:DVUA0079(locus name) psi-mi:q72ci8_desvh(display_long)|uniprotkb:sat(gene name)|psi-mi:sat(display_short)|uniprotkb:DVU_1295(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762511 author score:1 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009119.1|interpro:IPR002891(Adenylylsulphate kinase, C-terminal)|interpro:IPR027417|ensemblbacteria:AAS94378(transcript)|ensemblbacteria:DVUA0079(gene)|go:"GO:0000103"(sulfate assimilation)|go:"GO:0004020"(adenylylsulfate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0070814"(hydrogen sulfide biosynthetic process) refseq:WP_010938590.1|refseq:YP_010514.1|interpro:IPR025980|interpro:IPR015947(PUA-like)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR024951|interpro:IPR002650(ATP-sulphurylase)|ensemblbacteria:AAS95773(transcript)|ensemblbacteria:DVU_1295(gene)|go:"GO:0000103"(sulfate assimilation)|go:"GO:0004781"("sulfate adenylyltransferase (ATP) activity")|go:"GO:0005524"(ATP binding) - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:AzgwxtAox/Wwz/IEodce7dMOaco882 rogid:NadFlg06bcZBsH7luwDG012OKmM882 rigid:tLNrXxg7cLrDMw0oF2JHyMWVhT4 false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WL0 uniprotkb:Q727D5 intact:EBI-11762491|ensemblbacteria:AAS94378 intact:EBI-11762471|ensemblbacteria:AAS97392 psi-mi:q72wl0_desvh(display_long)|uniprotkb:APS kinase(gene name synonym)|uniprotkb:cysC(gene name)|psi-mi:cysC(display_short)|uniprotkb:ATP adenosine-5'-phosphosulfate 3'-phosphotransferase(gene name synonym)|uniprotkb:Adenosine-5'-phosphosulfate kinase(gene name synonym)|uniprotkb:DVUA0079(locus name) psi-mi:eftu_desvh(display_long)|uniprotkb:tuf(gene name)|psi-mi:tuf(display_short)|uniprotkb:DVU_2920(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762504 author score:0.548 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009119.1|interpro:IPR002891(Adenylylsulphate kinase, C-terminal)|interpro:IPR027417|ensemblbacteria:AAS94378(transcript)|ensemblbacteria:DVUA0079(gene)|go:"GO:0000103"(sulfate assimilation)|go:"GO:0004020"(adenylylsulfate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0070814"(hydrogen sulfide biosynthetic process) refseq:WP_010940180.1|refseq:YP_012132.1|interpro:IPR031157|interpro:IPR027417|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR009001(Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal)|interpro:IPR004541(Translation elongation factor EFTu/EF1A, bacterial and organelle)|interpro:IPR004160(Translation elongation factor EFTu/EF1A, C-terminal)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR041709|ensemblbacteria:AAS97392(transcript)|ensemblbacteria:DVU_2920(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|interpro:IPR033720 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:AzgwxtAox/Wwz/IEodce7dMOaco882 rogid:Fkve2lmTOsi7KxQYaO8gQI+HYsk882 rigid:KtaoC/fT/tl2Cvi/Pj7Wof+6p+k false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725Q1 uniprotkb:Q3V892 intact:EBI-10065220|ensemblbacteria:AAS97842 intact:EBI-10065060|ensemblbacteria:AAS95854 psi-mi:ilvd_desvh(display_long)|uniprotkb:DVU_3373(locus name)|uniprotkb:ilvD(gene name)|psi-mi:ilvD(display_short) psi-mi:q3v892_desvh(display_long)|uniprotkb:DVU_1376(locus name)|uniprotkb:ilvB-2(gene name)|psi-mi:ilvB-2(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762464 author score:0.961 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042096|interpro:IPR000581(Dihydroxy-acid and 6-phosphogluconate dehydratase)|interpro:IPR004404(Dihydroxy-acid dehydratase)|interpro:IPR020558|refseq:YP_012582.1|refseq:WP_010940628.1|ensemblbacteria:AAS97842(transcript)|ensemblbacteria:DVU_3373(gene)|go:"GO:0004160"(dihydroxy-acid dehydratase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037237 refseq:WP_010938671.1|interpro:IPR000399(TPP-binding enzymes, conserved site)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR012000(Thiamine pyrophosphate enzyme, central region)|interpro:IPR012001(Thiamine pyrophosphate enzyme, N-terminal TPP binding region)|interpro:IPR012846(Acetolactate synthase, large subunit, biosynthetic)|interpro:IPR029035|interpro:IPR029061|refseq:YP_010595.1|ensemblbacteria:AAS95854(transcript)|ensemblbacteria:DVU_1376(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR039368 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:a/oE5C3XEzlOa2Y3YW+wCE9f4Fk882 rogid:jWGIJ+r0YmbjGCCXIdRHBctcW5g882 rigid:wHhDYq0y9CLwplQ56jstVZi1Bwg false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725Q1 uniprotkb:Q72CA6 intact:EBI-10065220|ensemblbacteria:AAS97842 intact:EBI-10069692|ensemblbacteria:AAS95856 psi-mi:ilvd_desvh(display_long)|uniprotkb:DVU_3373(locus name)|uniprotkb:ilvD(gene name)|psi-mi:ilvD(display_short) psi-mi:ilvc_desvh(display_long)|uniprotkb:Acetohydroxy-acid isomeroreductase(gene name synonym)|uniprotkb:Alpha-keto-beta-hydroxylacyl reductoisomerase(gene name synonym)|uniprotkb:Ketol-acid reductoisomerase type 1(gene name synonym)|uniprotkb:Ketol-acid reductoisomerase type I(gene name synonym)|uniprotkb:DVU_1378(locus name)|uniprotkb:ilvC(gene name)|psi-mi:ilvC(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762457 author score:0.759 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042096|interpro:IPR000581(Dihydroxy-acid and 6-phosphogluconate dehydratase)|interpro:IPR004404(Dihydroxy-acid dehydratase)|interpro:IPR020558|refseq:YP_012582.1|refseq:WP_010940628.1|ensemblbacteria:AAS97842(transcript)|ensemblbacteria:DVU_3373(gene)|go:"GO:0004160"(dihydroxy-acid dehydratase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037237 interpro:IPR000506(Acetohydroxy acid isomeroreductase C-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR013023(Acetohydroxy acid isomeroreductase)|interpro:IPR013116(Acetohydroxy acid isomeroreductase, catalytic)|refseq:YP_010597.1|refseq:WP_010938673.1|ensemblbacteria:AAS95856(transcript)|ensemblbacteria:DVU_1378(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004455"(ketol-acid reductoisomerase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0050661"(NADP binding)|interpro:IPR014359(Ketol-acid reductoisomerase, gammaproteobacteria)|interpro:IPR036291 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:a/oE5C3XEzlOa2Y3YW+wCE9f4Fk882 rogid:td23Z6Z3fGNd6zS6PyuZhAslKRo882 rigid:OgCuu5jVsOL0U9HSCe4iEQjAdnI false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725Q1 uniprotkb:Q3V893 intact:EBI-10065220|ensemblbacteria:AAS97842 intact:EBI-10065080|ensemblbacteria:AAS94843 psi-mi:ilvd_desvh(display_long)|uniprotkb:DVU_3373(locus name)|uniprotkb:ilvD(gene name)|psi-mi:ilvD(display_short) psi-mi:q3v893_desvh(display_long)|uniprotkb:DVU_0360(locus name)|uniprotkb:ilvB-1(gene name)|psi-mi:ilvB-1(display_short) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762450 author score:0.938 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042096|interpro:IPR000581(Dihydroxy-acid and 6-phosphogluconate dehydratase)|interpro:IPR004404(Dihydroxy-acid dehydratase)|interpro:IPR020558|refseq:YP_012582.1|refseq:WP_010940628.1|ensemblbacteria:AAS97842(transcript)|ensemblbacteria:DVU_3373(gene)|go:"GO:0004160"(dihydroxy-acid dehydratase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037237 interpro:IPR000399(TPP-binding enzymes, conserved site)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR012000(Thiamine pyrophosphate enzyme, central region)|interpro:IPR012001(Thiamine pyrophosphate enzyme, N-terminal TPP binding region)|interpro:IPR012846(Acetolactate synthase, large subunit, biosynthetic)|interpro:IPR029035|interpro:IPR029061|refseq:YP_009584.1|refseq:WP_010937667.1|ensemblbacteria:AAS94843(transcript)|ensemblbacteria:DVU_0360(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR039368 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:a/oE5C3XEzlOa2Y3YW+wCE9f4Fk882 rogid:lvQXMko7j1aQpMOKdFSyGBI+VUk882 rigid:ClMnYXnSNCnTw9yW66tbzfBLhVo false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S3 uniprotkb:P61531 intact:EBI-11762431|ensemblbacteria:AAS97820 intact:EBI-11762412|ensemblbacteria:AAS96728 psi-mi:quea_desvh(display_long)|uniprotkb:queA(gene name)|psi-mi:queA(display_short)|uniprotkb:Queuosine biosynthesis protein QueA(gene name synonym)|uniprotkb:DVU_3351(locus name) psi-mi:ruvb_desvh(display_long)|uniprotkb:ruvB(gene name)|psi-mi:ruvB(display_short)|uniprotkb:DVU_2255(locus name) psi-mi:"MI:2223"(inference by quantitative co-purification) Shatsky et al. (2016) pubmed:27099342|doi:10.1074/mcp.m115.057117 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-11762443 author score:0.63 - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940607.1|refseq:YP_012560.1|interpro:IPR003699(Queuosine biosynthesis protein)|interpro:IPR042118|interpro:IPR042119|ensemblbacteria:AAS97820(transcript)|ensemblbacteria:DVU_3351(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0051075"("S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity")|interpro:IPR036100 refseq:WP_010939530.1|refseq:YP_011468.1|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004605(DNA helicase, Holliday junction RuvB type)|interpro:IPR008823(DNA helicase, Holliday junction RuvB type, C-terminal)|interpro:IPR027417|interpro:IPR008824(DNA helicase, Holliday junction RuvB type, N-terminal)|interpro:IPR041445|ensemblbacteria:DVU_2255(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0009378"(four-way junction helicase activity)|go:"GO:0009432"(SOS response)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|ensemblbacteria:AAS96728(transcript)|interpro:IPR036388|interpro:IPR036390 - - - figure legend:Dataset S4 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2016/06/15 2016/06/17 rogid:ZLbKLS6l8njHrEe8qzlCmd21HqA882 rogid:Fl8hz52lBGo0fVX2p5MHbBBk5Qo882 rigid:njEb60LUS45hZMZ4xuLEiddMrHY false - - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification)