#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:P62214 uniprotkb:Q726S9 intact:EBI-10087335|ensemblbacteria:AAS95570 intact:EBI-10087339|ensemblbacteria:AAS97498 psi-mi:reca_desvh(display_long)|uniprotkb:Recombinase A(gene name synonym)|uniprotkb:DVU_1090(locus name)|uniprotkb:recA(gene name)|psi-mi:recA(display_short) psi-mi:q726s9_desvh(display_long)|uniprotkb:DVU_3027(locus name)|uniprotkb:glcD(gene name)|psi-mi:glcD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087350 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013765(RecA)|interpro:IPR020584|interpro:IPR020587|interpro:IPR020588|interpro:IPR023400|interpro:IPR027417|refseq:YP_010311.1|refseq:WP_010938389.1|ensemblbacteria:AAS95570(transcript)|ensemblbacteria:DVU_1090(gene)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0009432"(SOS response)|entrezgene/locuslink:2794069(identity) interpro:IPR004113(FAD-linked oxidase, C-terminal)|interpro:IPR006094(FAD linked oxidase, N-terminal)|interpro:IPR016164(FAD-linked oxidase-like, C-terminal)|interpro:IPR016166(FAD-binding, type 2)|interpro:IPR016171(Vanillyl-alcohol oxidase, C-terminal subdomain 2)|refseq:YP_012238.1|refseq:WP_010940286.1|ensemblbacteria:AAS97498(transcript)|ensemblbacteria:DVU_3027(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0071949"(FAD binding)|interpro:IPR016167(FAD-binding, type 2, subdomain 1)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR036318|entrezgene/locuslink:2796444(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.21" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:qlpT+dnX+nw3jy4G7kPXIHl+1gk882 rogid:D3T6bB2boPilNT/h2HI/ZGG8Ri4882 intact-crc:DD77C9A1556EC71C|rigid:GBE4jFN1yFSxX2ybAXp2bygL8hU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62214 uniprotkb:Q729Q1 intact:EBI-10087335|ensemblbacteria:AAS95570 intact:EBI-10087343|ensemblbacteria:AAS96772 psi-mi:reca_desvh(display_long)|uniprotkb:Recombinase A(gene name synonym)|uniprotkb:DVU_1090(locus name)|uniprotkb:recA(gene name)|psi-mi:recA(display_short) psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087350 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013765(RecA)|interpro:IPR020584|interpro:IPR020587|interpro:IPR020588|interpro:IPR023400|interpro:IPR027417|refseq:YP_010311.1|refseq:WP_010938389.1|ensemblbacteria:AAS95570(transcript)|ensemblbacteria:DVU_1090(gene)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0009432"(SOS response)|entrezgene/locuslink:2794069(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:qlpT+dnX+nw3jy4G7kPXIHl+1gk882 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 intact-crc:DD77C9A1556EC71C|rigid:GBE4jFN1yFSxX2ybAXp2bygL8hU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62214 uniprotkb:Q72BF0 intact:EBI-10087335|ensemblbacteria:AAS95570 intact:EBI-10069353|ensemblbacteria:AAS96163 psi-mi:reca_desvh(display_long)|uniprotkb:Recombinase A(gene name synonym)|uniprotkb:DVU_1090(locus name)|uniprotkb:recA(gene name)|psi-mi:recA(display_short) psi-mi:q72bf0_desvh(display_long)|uniprotkb:DVU_1686(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087350 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013765(RecA)|interpro:IPR020584|interpro:IPR020587|interpro:IPR020588|interpro:IPR023400|interpro:IPR027417|refseq:YP_010311.1|refseq:WP_010938389.1|ensemblbacteria:AAS95570(transcript)|ensemblbacteria:DVU_1090(gene)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0009432"(SOS response)|entrezgene/locuslink:2794069(identity) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR008824(DNA helicase, Holliday junction RuvB type, N-terminal)|interpro:IPR008921(DNA polymerase III clamp loader subunit, C-terminal)|interpro:IPR021886|interpro:IPR027417|refseq:YP_010904.1|interpro:IPR032423|refseq:WP_010938975.1|ensemblbacteria:AAS96163(transcript)|ensemblbacteria:DVU_1686(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003677"(DNA binding)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0009378"(four-way junction helicase activity)|entrezgene/locuslink:2794914(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:qlpT+dnX+nw3jy4G7kPXIHl+1gk882 rogid:Ztr2GDn8VxuIRhLODA0jfi/vW3Q882 intact-crc:DD77C9A1556EC71C|rigid:GBE4jFN1yFSxX2ybAXp2bygL8hU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62214 uniprotkb:Q729E7 intact:EBI-10087335|ensemblbacteria:AAS95570 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:reca_desvh(display_long)|uniprotkb:Recombinase A(gene name synonym)|uniprotkb:DVU_1090(locus name)|uniprotkb:recA(gene name)|psi-mi:recA(display_short) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087350 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013765(RecA)|interpro:IPR020584|interpro:IPR020587|interpro:IPR020588|interpro:IPR023400|interpro:IPR027417|refseq:YP_010311.1|refseq:WP_010938389.1|ensemblbacteria:AAS95570(transcript)|ensemblbacteria:DVU_1090(gene)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0009432"(SOS response)|entrezgene/locuslink:2794069(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794489(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:qlpT+dnX+nw3jy4G7kPXIHl+1gk882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:DD77C9A1556EC71C|rigid:GBE4jFN1yFSxX2ybAXp2bygL8hU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62214 uniprotkb:Q725M6 intact:EBI-10087335|ensemblbacteria:AAS95570 intact:EBI-10087346|ensemblbacteria:AAS97713 psi-mi:reca_desvh(display_long)|uniprotkb:Recombinase A(gene name synonym)|uniprotkb:DVU_1090(locus name)|uniprotkb:recA(gene name)|psi-mi:recA(display_short) psi-mi:dnaj_desvh(display_long)|uniprotkb:DVU_3243(locus name)|uniprotkb:dnaJ(gene name)|psi-mi:dnaJ(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087350 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013765(RecA)|interpro:IPR020584|interpro:IPR020587|interpro:IPR020588|interpro:IPR023400|interpro:IPR027417|refseq:YP_010311.1|refseq:WP_010938389.1|ensemblbacteria:AAS95570(transcript)|ensemblbacteria:DVU_1090(gene)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0009432"(SOS response)|entrezgene/locuslink:2794069(identity) interpro:IPR001305(Heat shock protein DnaJ, cysteine-rich region)|interpro:IPR001623(Heat shock protein DnaJ, N-terminal)|interpro:IPR002939(Chaperone DnaJ, C-terminal)|interpro:IPR008971(HSP40/DnaJ peptide-binding)|interpro:IPR012724(Chaperone DnaJ)|interpro:IPR018253|refseq:YP_012453.1|refseq:WP_010940501.1|ensemblbacteria:AAS97713(transcript)|ensemblbacteria:DVU_3243(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006260"(DNA replication)|go:"GO:0006457"(protein folding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0009408"(response to heat)|go:"GO:0031072"(heat shock protein binding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036410|interpro:IPR036869|entrezgene/locuslink:2793893(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.18" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:qlpT+dnX+nw3jy4G7kPXIHl+1gk882 rogid:RA6rMjSTwQ4ps0Kqal20qfJVgyE882 intact-crc:DD77C9A1556EC71C|rigid:GBE4jFN1yFSxX2ybAXp2bygL8hU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS0 uniprotkb:Q06173 intact:EBI-6974660|ensemblbacteria:AAS96398|intact:MINT-8183946 intact:EBI-10065032|ensemblbacteria:AAS96397 psi-mi:q72as0_desvh(display_long)|uniprotkb:hynA-1(gene name)|psi-mi:hynA-1(display_short)|uniprotkb:DVU_1922(locus name) psi-mi:phns1_desvh(display_long)|uniprotkb:NiFe hydrogenlyase small chain 1(gene name synonym)|uniprotkb:hynB-1(gene name synonym)|uniprotkb:DVU_1921(locus name)|uniprotkb:hynB1(gene name)|psi-mi:hynB1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087399 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS96398(transcript)|ensemblbacteria:DVU_1922(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|refseq:YP_011139.1|interpro:IPR018194|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR029014|refseq:WP_010939208.1|entrezgene/locuslink:2793338(identity) interpro:IPR001821([Ni-Fe]-hydrogenase, small subunit)|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR019546|interpro:IPR027394|refseq:YP_011138.1|refseq:WP_010939207.1|ensemblbacteria:AAS96397(transcript)|ensemblbacteria:DVU_1921(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0009375"(ferredoxin hydrogenase complex)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0047806"(cytochrome-c3 hydrogenase activity)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037024|interpro:IPR037148|entrezgene/locuslink:2793337(identity) psi-mi:"MI:0469"(intact) comment:mint|comment:"Author predicted score: 0.07" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:9diknYXRsRHX5Dg4cFqEuG/cGFw882 rogid:3BEe8rX/dDoc5EUNj2EOk7FFMt0882 intact-crc:07C42FC48F209EBC|rigid:oDycV5kzdi2s2ZlQ0tGB9RX+o0w false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725I1 uniprotkb:Q725W7 intact:EBI-10072079|ensemblbacteria:AAS97638 intact:EBI-10065413|ensemblbacteria:AAS97776 psi-mi:gsa_desvh(display_long)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym)|uniprotkb:DVU_3168(locus name)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short) psi-mi:y3308_desvh(display_long)|uniprotkb:DVU_3308(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087428 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_012378.1|refseq:WP_010940426.1|ensemblbacteria:AAS97638(transcript)|ensemblbacteria:DVU_3168(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|entrezgene/locuslink:2795873(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR022877|refseq:YP_012516.1|refseq:WP_010940564.1|ensemblbacteria:AAS97776(transcript)|ensemblbacteria:DVU_3308(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036866|entrezgene/locuslink:2796044(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:favigLRkFM2wUwADh0JCloRp2DQ882 rogid:LSP6qf9lLsruesKVLdsnR2wt1dk882 intact-crc:869C7958F4AC3156|rigid:3mq1fN5dnXKzUeDGxoMJOP2j58c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725I1 uniprotkb:Q727T9 intact:EBI-10072079|ensemblbacteria:AAS97638 intact:EBI-10066426|ensemblbacteria:AAS97237 psi-mi:gsa_desvh(display_long)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym)|uniprotkb:DVU_3168(locus name)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short) psi-mi:q727t9_desvh(display_long)|uniprotkb:DVU_2765(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087428 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_012378.1|refseq:WP_010940426.1|ensemblbacteria:AAS97638(transcript)|ensemblbacteria:DVU_3168(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|entrezgene/locuslink:2795873(identity) interpro:IPR001279(Beta-lactamase-like)|refseq:YP_011977.1|refseq:WP_010940031.1|ensemblbacteria:AAS97237(transcript)|ensemblbacteria:DVU_2765(gene)|interpro:IPR036866|entrezgene/locuslink:2796315(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:favigLRkFM2wUwADh0JCloRp2DQ882 rogid:1lSzPGPfrXcrxcozEq34U5edV1U882 intact-crc:869C7958F4AC3156|rigid:3mq1fN5dnXKzUeDGxoMJOP2j58c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725I1 uniprotkb:Q72A94 intact:EBI-10072079|ensemblbacteria:AAS97638 intact:EBI-10065907|ensemblbacteria:AAS96576 psi-mi:gsa_desvh(display_long)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym)|uniprotkb:DVU_3168(locus name)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short) psi-mi:q72a94_desvh(display_long)|uniprotkb:DVU_2103(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087428 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_012378.1|refseq:WP_010940426.1|ensemblbacteria:AAS97638(transcript)|ensemblbacteria:DVU_3168(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|entrezgene/locuslink:2795873(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011316.1|refseq:WP_010939380.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|ensemblbacteria:AAS96576(transcript)|ensemblbacteria:DVU_2103(gene)|entrezgene/locuslink:2795479(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:favigLRkFM2wUwADh0JCloRp2DQ882 rogid:bIlVXxSJZO2d9vZ2o9xs0d/Wo/Q882 intact-crc:869C7958F4AC3156|rigid:3mq1fN5dnXKzUeDGxoMJOP2j58c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62470 uniprotkb:Q72CV7 intact:EBI-10087382|ensemblbacteria:AAS96984 intact:EBI-10087379|ensemblbacteria:AAS95654 psi-mi:rsmh_desvh(display_long)|uniprotkb:"16S rRNA m(4)C1402 methyltransferase"(gene name synonym)|uniprotkb:mraW(gene name synonym)|uniprotkb:"rRNA (cytosine-N(4)-)-methyltransferase RsmH"(gene name synonym)|uniprotkb:DVU_2512(locus name)|uniprotkb:rsmH(gene name)|psi-mi:rsmH(display_short) psi-mi:q72cv7_desvh(display_long)|uniprotkb:DVU_1176(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087386 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002903(Bacterial methyltransferase)|interpro:IPR023397|interpro:IPR029063|refseq:YP_011724.1|refseq:WP_010939782.1|ensemblbacteria:AAS96984(transcript)|ensemblbacteria:DVU_2512(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0070475"(rRNA base methylation)|go:"GO:0071424"("rRNA (cytosine-N4-)-methyltransferase activity")|entrezgene/locuslink:2795640(identity) refseq:YP_010395.1|refseq:WP_010938473.1|ensemblbacteria:AAS95654(transcript)|ensemblbacteria:DVU_1176(gene)|entrezgene/locuslink:2794864(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:ag2/mrlGdwEhdk9q0wbxShLqb0o882 rogid:275oQmHKUnIj+vFvycFdpDVHLjs882 intact-crc:5F1D5E3372410752|rigid:twlCDIXPWDww7mnr5oq76ZU/rtE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725P3 uniprotkb:Q72AE2 intact:EBI-10087469|ensemblbacteria:AAS97850 intact:EBI-10067762|ensemblbacteria:AAS96528 psi-mi:q725p3_desvh(display_long)|uniprotkb:DVU_3381(locus name) psi-mi:q72ae2_desvh(display_long)|uniprotkb:metG(gene name)|psi-mi:metG(display_short)|uniprotkb:Methionyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2055(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087472 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_012590.1|refseq:WP_010940636.1|ensemblbacteria:AAS97850(transcript)|ensemblbacteria:DVU_3381(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2796400(identity) interpro:IPR041872|interpro:IPR033911|interpro:IPR002547(tRNA-binding region)|interpro:IPR004495(Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR014758(Methionyl-tRNA synthetase, class Ia, N-terminal)|interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|interpro:IPR023457|refseq:WP_010939333.1|refseq:YP_011268.1|interpro:IPR032678|ensemblbacteria:AAS96528(transcript)|ensemblbacteria:DVU_2055(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004825"(methionine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006431"(methionyl-tRNA aminoacylation)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2796479(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:rKgwynSMY8eLsTkp/GA3xQsmD/U882 rogid:h1kUEOwSshrNiJpCu6I400O/Ay0882 intact-crc:F91B4699B1E41CAB|rigid:V0au5k6PZ21hdV9PU+nVz8ZrMHg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725P3 uniprotkb:Q729Z4 intact:EBI-10087469|ensemblbacteria:AAS97850 intact:EBI-10070992|ensemblbacteria:AAS96676 psi-mi:q725p3_desvh(display_long)|uniprotkb:DVU_3381(locus name) psi-mi:q729z4_desvh(display_long)|uniprotkb:DVU_2203(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087472 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_012590.1|refseq:WP_010940636.1|ensemblbacteria:AAS97850(transcript)|ensemblbacteria:DVU_3381(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2796400(identity) interpro:IPR006056(YjgF-like protein)|interpro:IPR006175(Endoribonuclease L-PSP)|interpro:IPR019897|refseq:YP_011416.1|refseq:WP_010939478.1|ensemblbacteria:AAS96676(transcript)|ensemblbacteria:DVU_2203(gene)|interpro:IPR035959|entrezgene/locuslink:2793666(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:rKgwynSMY8eLsTkp/GA3xQsmD/U882 rogid:59A6eTH+0mygDZPIwxZPfbHJztU882 intact-crc:F91B4699B1E41CAB|rigid:V0au5k6PZ21hdV9PU+nVz8ZrMHg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725N5 uniprotkb:Q725P5 intact:EBI-10087452|ensemblbacteria:AAS97858 intact:EBI-10087449|ensemblbacteria:AAS97848 psi-mi:q725n5_desvh(display_long)|uniprotkb:DNA topoisomerase I(gene name synonym)|uniprotkb:DVU_3389(locus name)|uniprotkb:topA(gene name)|psi-mi:topA(display_short) psi-mi:q725p5_desvh(display_long)|uniprotkb:DVU_3379(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087456 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940644.1|interpro:IPR013824(DNA topoisomerase, type IA, central region, subdomain 1)|interpro:IPR013826(DNA topoisomerase, type IA, central region, subdomain 3)|interpro:IPR034149|interpro:IPR003601(DNA topoisomerase, type IA, domain 2)|interpro:IPR003602(DNA topoisomerase, type IA, DNA-binding)|interpro:IPR005733(DNA topoisomerase I, bacterial-type)|interpro:IPR006171(TOPRIM)|interpro:IPR013497(DNA topoisomerase, type IA, central)|interpro:IPR013498(DNA topoisomerase, type IA, zn finger)|interpro:IPR013825(DNA topoisomerase, type IA, central region, subdomain 2)|interpro:IPR023405|interpro:IPR023406|interpro:IPR028612|refseq:YP_012598.1|ensemblbacteria:AAS97858(transcript)|ensemblbacteria:DVU_3389(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003917"("DNA topoisomerase type I (single strand cut, ATP-independent) activity")|go:"GO:0005694"(chromosome)|go:"GO:0006265"(DNA topological change)|go:"GO:0046872"(metal ion binding)|interpro:IPR000380(DNA topoisomerase, type IA, core)|entrezgene/locuslink:2796408(identity) interpro:IPR000788(Ribonucleotide reductase large subunit, C-terminal)|interpro:IPR008926(Ribonucleotide reductase R1 subunit, N-terminal)|interpro:IPR013344(Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent)|interpro:IPR013509(Ribonucleotide reductase large subunit, N-terminal)|refseq:YP_012588.1|ensemblbacteria:AAS97848(transcript)|ensemblbacteria:DVU_3379(gene)|go:"GO:0004748"(ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0031419"(cobalamin binding)|go:"GO:0071897"(DNA biosynthetic process)|entrezgene/locuslink:2796398(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:0QxY7dD/vJ66/XZAfIK70ZunLw4882 rogid:tvOAla0BOknbbmMTM4AnaavVD6k882 intact-crc:B356A54768256936|rigid:aOA6cEdNqbsnjCsx8KxNFpCUj5g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S1 uniprotkb:P61940 intact:EBI-10087509|ensemblbacteria:AAS97822 intact:EBI-10065097|ensemblbacteria:AAS95676 psi-mi:q725s1_desvh(display_long)|uniprotkb:DNA/pantothenate metabolism flavoprotein(gene name synonym)|uniprotkb:coaBC(gene name)|psi-mi:coaBC(display_short)|uniprotkb:Phosphopantothenoylcysteine synthetase/decarboxylase(gene name synonym)|uniprotkb:DVU_3353(locus name) psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087513 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003382(Flavoprotein)|interpro:IPR005252(Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase)|interpro:IPR007085(DNA/pantothenate metabolism flavoprotein, C-terminal)|refseq:YP_012562.1|refseq:WP_010940609.1|ensemblbacteria:AAS97822(transcript)|ensemblbacteria:DVU_3353(gene)|go:"GO:0004632"(phosphopantothenate--cysteine ligase activity)|go:"GO:0004633"(phosphopantothenoylcysteine decarboxylase activity)|go:"GO:0010181"(FMN binding)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0015941"(pantothenate catabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR035929|interpro:IPR036551|entrezgene/locuslink:2795667(identity) interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467|entrezgene/locuslink:2796655(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:U1admFKiD9B/Pmgbvxckmb3AjoI882 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 intact-crc:BC9334917A9C318F|rigid:nwA7br9OBzvzvmh5uGo9Y1KYeGo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S1 uniprotkb:Q72CE9 intact:EBI-10087509|ensemblbacteria:AAS97822 intact:EBI-10087505|ensemblbacteria:AAS95812 psi-mi:q725s1_desvh(display_long)|uniprotkb:DNA/pantothenate metabolism flavoprotein(gene name synonym)|uniprotkb:coaBC(gene name)|psi-mi:coaBC(display_short)|uniprotkb:Phosphopantothenoylcysteine synthetase/decarboxylase(gene name synonym)|uniprotkb:DVU_3353(locus name) psi-mi:tig_desvh(display_long)|uniprotkb:PPIase(gene name synonym)|uniprotkb:DVU_1334(locus name)|uniprotkb:tig(gene name)|psi-mi:tig(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087513 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003382(Flavoprotein)|interpro:IPR005252(Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase)|interpro:IPR007085(DNA/pantothenate metabolism flavoprotein, C-terminal)|refseq:YP_012562.1|refseq:WP_010940609.1|ensemblbacteria:AAS97822(transcript)|ensemblbacteria:DVU_3353(gene)|go:"GO:0004632"(phosphopantothenate--cysteine ligase activity)|go:"GO:0004633"(phosphopantothenoylcysteine decarboxylase activity)|go:"GO:0010181"(FMN binding)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0015941"(pantothenate catabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR035929|interpro:IPR036551|entrezgene/locuslink:2795667(identity) interpro:IPR005215(Trigger factor)|interpro:IPR008880(Trigger factor, C-terminal, bacterial)|interpro:IPR008881(Trigger factor, ribosome-binding, bacterial)|interpro:IPR027304|refseq:WP_010938629.1|refseq:YP_010553.1|ensemblbacteria:AAS95812(transcript)|ensemblbacteria:DVU_1334(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0007049"(cell cycle)|go:"GO:0015031"(protein transport)|go:"GO:0051301"(cell division)|interpro:IPR036611|interpro:IPR037041|entrezgene/locuslink:2794582(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.17" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:U1admFKiD9B/Pmgbvxckmb3AjoI882 rogid:0DsKo13lsPnHvMMeGub4YeC18nI882 intact-crc:BC9334917A9C318F|rigid:nwA7br9OBzvzvmh5uGo9Y1KYeGo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S1 uniprotkb:Q728M6 intact:EBI-10087509|ensemblbacteria:AAS97822 intact:EBI-10087502|ensemblbacteria:AAS97049 psi-mi:q725s1_desvh(display_long)|uniprotkb:DNA/pantothenate metabolism flavoprotein(gene name synonym)|uniprotkb:coaBC(gene name)|psi-mi:coaBC(display_short)|uniprotkb:Phosphopantothenoylcysteine synthetase/decarboxylase(gene name synonym)|uniprotkb:DVU_3353(locus name) psi-mi:q728m6_desvh(display_long)|uniprotkb:DVU_2577(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087513 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003382(Flavoprotein)|interpro:IPR005252(Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase)|interpro:IPR007085(DNA/pantothenate metabolism flavoprotein, C-terminal)|refseq:YP_012562.1|refseq:WP_010940609.1|ensemblbacteria:AAS97822(transcript)|ensemblbacteria:DVU_3353(gene)|go:"GO:0004632"(phosphopantothenate--cysteine ligase activity)|go:"GO:0004633"(phosphopantothenoylcysteine decarboxylase activity)|go:"GO:0010181"(FMN binding)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0015941"(pantothenate catabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR035929|interpro:IPR036551|entrezgene/locuslink:2795667(identity) interpro:IPR000792(Bacterial regulatory protein, LuxR)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|refseq:YP_011789.1|refseq:WP_010939847.1|ensemblbacteria:AAS97049(transcript)|ensemblbacteria:DVU_2577(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|entrezgene/locuslink:2794984(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:U1admFKiD9B/Pmgbvxckmb3AjoI882 rogid:ANoo0KpuaIm9LAUb3tRXm57THhM882 intact-crc:BC9334917A9C318F|rigid:nwA7br9OBzvzvmh5uGo9Y1KYeGo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729C4 uniprotkb:Q725W7 intact:EBI-10067155|ensemblbacteria:AAS96900 intact:EBI-10065413|ensemblbacteria:AAS97776 psi-mi:q729c4_desvh(display_long)|uniprotkb:DVU_2427(locus name) psi-mi:y3308_desvh(display_long)|uniprotkb:DVU_3308(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087547 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011640.1|ensemblbacteria:AAS96900(transcript)|ensemblbacteria:DVU_2427(gene)|entrezgene/locuslink:2794368(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR022877|refseq:YP_012516.1|refseq:WP_010940564.1|ensemblbacteria:AAS97776(transcript)|ensemblbacteria:DVU_3308(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036866|entrezgene/locuslink:2796044(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.04" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:AAuZ05FpdYBy8r9F3WpZt/Q0NvE882 rogid:LSP6qf9lLsruesKVLdsnR2wt1dk882 intact-crc:02766FA15757BF11|rigid:100uz0bVDH5IbLqltGn1YBLerPw false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BF0 uniprotkb:Q725R5 intact:EBI-10069353|ensemblbacteria:AAS96163 intact:EBI-10065238|ensemblbacteria:AAS97828 psi-mi:q72bf0_desvh(display_long)|uniprotkb:DVU_1686(locus name) psi-mi:q725r5_desvh(display_long)|uniprotkb:DVU_3359(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087489 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR008824(DNA helicase, Holliday junction RuvB type, N-terminal)|interpro:IPR008921(DNA polymerase III clamp loader subunit, C-terminal)|interpro:IPR021886|interpro:IPR027417|refseq:YP_010904.1|interpro:IPR032423|refseq:WP_010938975.1|ensemblbacteria:AAS96163(transcript)|ensemblbacteria:DVU_1686(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003677"(DNA binding)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0009378"(four-way junction helicase activity)|entrezgene/locuslink:2794914(identity) refseq:YP_012568.1|refseq:WP_010940614.1|ensemblbacteria:AAS97828(transcript)|ensemblbacteria:DVU_3359(gene)|entrezgene/locuslink:2795673(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.20" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Ztr2GDn8VxuIRhLODA0jfi/vW3Q882 rogid:L6HHP1ZsRduPuCE+KCmIIC+wf7o882 intact-crc:11166CD53CB8528E|rigid:vMsHIiZqj5BH+0uP9ArkcaIu+44 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726N8 uniprotkb:Q72DZ0 intact:EBI-10087573|ensemblbacteria:AAS97539 intact:EBI-10065736|ensemblbacteria:AAS95269 psi-mi:q726n8_desvh(display_long)|uniprotkb:DVU_3068(locus name) psi-mi:q72dz0_desvh(display_long)|uniprotkb:mreB-1(gene name)|psi-mi:mreB-1(display_short)|uniprotkb:mreB(gene name synonym)|uniprotkb:DVU_0789(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087576 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000014(PAS)|interpro:IPR000160(GGDEF)|interpro:IPR001610(PAC motif)|interpro:IPR003018(GAF)|interpro:IPR013656(PAS fold-4)|interpro:IPR029016|interpro:IPR029787|refseq:YP_012279.1|refseq:WP_010940327.1|ensemblbacteria:AAS97539(transcript)|ensemblbacteria:DVU_3068(gene)|interpro:IPR035965|interpro:IPR043128|entrezgene/locuslink:2796419(identity) interpro:IPR004753(Cell shape determining protein MreB/Mrl)|refseq:YP_010010.1|refseq:WP_010938090.1|ensemblbacteria:AAS95269(transcript)|ensemblbacteria:DVU_0789(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008360"(regulation of cell shape)|interpro:IPR043129|entrezgene/locuslink:2794814(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.05" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:lGCWcBciokV1QIuAfJARyHqxBfU882 rogid:fFYaNrre0bxUOT6ODto2PoxMHgc882 intact-crc:060EE401D35A3E53|rigid:DFviyxlxjPr6jUm1EIArWPo0g1k false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726N8 uniprotkb:Q726S4 intact:EBI-10087573|ensemblbacteria:AAS97539 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q726n8_desvh(display_long)|uniprotkb:DVU_3068(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087576 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000014(PAS)|interpro:IPR000160(GGDEF)|interpro:IPR001610(PAC motif)|interpro:IPR003018(GAF)|interpro:IPR013656(PAS fold-4)|interpro:IPR029016|interpro:IPR029787|refseq:YP_012279.1|refseq:WP_010940327.1|ensemblbacteria:AAS97539(transcript)|ensemblbacteria:DVU_3068(gene)|interpro:IPR035965|interpro:IPR043128|entrezgene/locuslink:2796419(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:lGCWcBciokV1QIuAfJARyHqxBfU882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:060EE401D35A3E53|rigid:DFviyxlxjPr6jUm1EIArWPo0g1k false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72FF0 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10071893|ensemblbacteria:AAS94747 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72ff0_desvh(display_long)|uniprotkb:DVU_0264(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_009488.1|refseq:WP_010937573.1|ensemblbacteria:AAS94747(transcript)|ensemblbacteria:DVU_0264(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795006(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:t19Ou93+B6vQ0rFvwWG5c05wJA8882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72WL4 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10087623|ensemblbacteria:AAS94380 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72wl4_desvh(display_long)|uniprotkb:DVUA0075(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009115.1|refseq:WP_011176653.1|ensemblbacteria:AAS94380(transcript)|ensemblbacteria:DVUA0075(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2781603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:I0c4uzTTT2zTRbWP8O49+seYpIU882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72A92 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10087612|ensemblbacteria:AAS96578 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72a92_desvh(display_long)|uniprotkb:DVU_2105(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) refseq:YP_011318.1|ensemblbacteria:AAS96578(transcript)|ensemblbacteria:DVU_2105(gene)|entrezgene/locuslink:2793377(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:JcyL2NcJci/cT5X6RwKQ1/Qy2rU882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72CD9 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10087615|ensemblbacteria:AAS95822 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:ispg_desvh(display_long)|uniprotkb:"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase"(gene name synonym)|uniprotkb:DVU_1344(locus name)|uniprotkb:ispG(gene name)|psi-mi:ispG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR004588(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type)|interpro:IPR011005(Dihydropteroate synthase-like)|interpro:IPR016425(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial)|refseq:YP_010563.1|ensemblbacteria:AAS95822(transcript)|ensemblbacteria:DVU_1344(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046429"(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795143(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:caynhpgg6DreuOCdNYjsh6v10RU882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q729F1 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10067171|ensemblbacteria:AAS96873 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794485(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72FE8 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10071896|ensemblbacteria:AAS94749 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72fe8_desvh(display_long)|uniprotkb:DVU_0266(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) ensemblbacteria:AAS94749(transcript)|ensemblbacteria:DVU_0266(gene)|interpro:IPR015943(WD40/YVTN repeat-like)|entrezgene/locuslink:2795008(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:pAQeBO0nB+suC3Z/7B2a1Bna8jc882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72EV1 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10087619|ensemblbacteria:AAS94950 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72ev1_desvh(display_long)|uniprotkb:DVU_0467(locus name)|uniprotkb:trpD(gene name)|psi-mi:trpD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR000312(Glycosyl transferase, family 3)|interpro:IPR005940(Anthranilate phosphoribosyl transferase)|interpro:IPR017459(Glycosyl transferase, family 3, N-terminal)|refseq:YP_009691.1|refseq:WP_010937774.1|ensemblbacteria:AAS94950(transcript)|ensemblbacteria:DVU_0467(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004048"(anthranilate phosphoribosyltransferase activity)|interpro:IPR035902|interpro:IPR036320|entrezgene/locuslink:2793608(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.16" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:E4h1EG+898EE3/cHWn+uXX8jK6s882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72CV4 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065903|ensemblbacteria:AAS95657 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72cv4_desvh(display_long)|uniprotkb:DVU_1179(locus name)|uniprotkb:aor(gene name)|psi-mi:aor(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|refseq:YP_010398.1|refseq:WP_010938476.1|ensemblbacteria:AAS95657(transcript)|ensemblbacteria:DVU_1179(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2796664(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.19" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid://UHaftptjuUgn+rNqOh5dzqgdY882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q729Q1 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10087343|ensemblbacteria:AAS96772 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.18" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:P45575 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087609 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.25" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:2A949B9F38632DDA|rigid:ItXi6IgqUUP64TObsZIoNDY0QoQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726Q9 uniprotkb:Q72EB4 intact:EBI-10087596|ensemblbacteria:AAS97518 intact:EBI-10067158|ensemblbacteria:AAS95145 psi-mi:q726q9_desvh(display_long)|uniprotkb:DVU_3047(locus name) psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087593 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001544(Aminotransferase, class IV)|refseq:YP_012258.1|refseq:WP_010940306.1|ensemblbacteria:AAS97518(transcript)|ensemblbacteria:DVU_3047(gene)|go:"GO:0008483"(transaminase activity)|interpro:IPR036038|interpro:IPR043131|interpro:IPR043132|entrezgene/locuslink:2796073(identity) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:wsv4XsGDZ+02uSf48btEJI1NMyY882 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 intact-crc:1E6C5013B819B261|rigid:91Nn2tL488q/NYf3crji7qnSQjQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725V9 uniprotkb:Q725W8 intact:EBI-10065362|ensemblbacteria:AAS97784 intact:EBI-10065409|ensemblbacteria:AAS97775 psi-mi:q725v9_desvh(display_long)|uniprotkb:DVU_3316(locus name)|uniprotkb:pyrD(gene name)|psi-mi:pyrD(display_short) psi-mi:q725w8_desvh(display_long)|uniprotkb:DVU_3307(locus name)|uniprotkb:ubiX(gene name)|psi-mi:ubiX(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087560 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940572.1|interpro:IPR033888|interpro:IPR001295(Dihydroorotate dehydrogenase, core)|interpro:IPR005720(Dihydroorotate dehydrogenase, class 1, core)|interpro:IPR012135(Dihydroorotate dehydrogenase, classes 1 and 2)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024920|refseq:YP_012524.1|ensemblbacteria:AAS97784(transcript)|ensemblbacteria:DVU_3316(gene)|go:"GO:0004152"(dihydroorotate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|entrezgene/locuslink:2796052(identity) interpro:IPR003382(Flavoprotein)|interpro:IPR004507(Phenylacrylic acid decarboxylase)|refseq:YP_012515.1|refseq:WP_010940563.1|ensemblbacteria:AAS97775(transcript)|ensemblbacteria:DVU_3307(gene)|go:"GO:0016829"(lyase activity)|go:"GO:0106141"(flavin prenyltransferase activity)|interpro:IPR036551|entrezgene/locuslink:2796043(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.04" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:s+GZoJbZ1WbnwValE/o98ek0FcA882 rogid:bGIB6aEgR23QVj790rILJ4FjOj0882 intact-crc:F92236FBFF16760F|rigid:7nu+eXlcbFPJkR2Y5eWxW5Fg3oE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q72CV4 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065903|ensemblbacteria:AAS95657 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q72cv4_desvh(display_long)|uniprotkb:DVU_1179(locus name)|uniprotkb:aor(gene name)|psi-mi:aor(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087685 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|refseq:YP_010398.1|refseq:WP_010938476.1|ensemblbacteria:AAS95657(transcript)|ensemblbacteria:DVU_1179(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2796664(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.22" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid://UHaftptjuUgn+rNqOh5dzqgdY882 intact-crc:4FFABC49EA6A9DCE|rigid:OzapNNCuaKrxHNbiIew2Zwmdhc4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q72A93 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087685 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.22" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:4FFABC49EA6A9DCE|rigid:OzapNNCuaKrxHNbiIew2Zwmdhc4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S7 uniprotkb:Q729Q1 intact:EBI-10087705|ensemblbacteria:AAS97500 intact:EBI-10087343|ensemblbacteria:AAS96772 psi-mi:pta_desvh(display_long)|uniprotkb:Phosphotransacetylase(gene name synonym)|uniprotkb:DVU_3029(locus name)|uniprotkb:pta(gene name)|psi-mi:pta(display_short) psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087702 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042112|interpro:IPR042113|interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR004614(Phosphate acetyltransferase)|interpro:IPR010766(DRTGG)|interpro:IPR016475(Phosphate acetyltransferase, bacteria)|interpro:IPR027417|interpro:IPR028979|refseq:YP_012240.1|refseq:WP_010940288.1|ensemblbacteria:AAS97500(transcript)|ensemblbacteria:DVU_3029(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006085"(acetyl-CoA biosynthetic process)|go:"GO:0008959"(phosphate acetyltransferase activity)|entrezgene/locuslink:2796446(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:M0XYPsqslSPJ4v3xp2CUfwXMxuA882 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 intact-crc:2D1213FAB674D042|rigid:WjmwuseyKjUv5kpoJZH1JZsU+8w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S7 uniprotkb:Q72DN8 intact:EBI-10087705|ensemblbacteria:AAS97500 intact:EBI-10087709|ensemblbacteria:AAS95371 psi-mi:pta_desvh(display_long)|uniprotkb:Phosphotransacetylase(gene name synonym)|uniprotkb:DVU_3029(locus name)|uniprotkb:pta(gene name)|psi-mi:pta(display_short) psi-mi:q72dn8_desvh(display_long)|uniprotkb:DVU_0891(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087702 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042112|interpro:IPR042113|interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR004614(Phosphate acetyltransferase)|interpro:IPR010766(DRTGG)|interpro:IPR016475(Phosphate acetyltransferase, bacteria)|interpro:IPR027417|interpro:IPR028979|refseq:YP_012240.1|refseq:WP_010940288.1|ensemblbacteria:AAS97500(transcript)|ensemblbacteria:DVU_3029(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006085"(acetyl-CoA biosynthetic process)|go:"GO:0008959"(phosphate acetyltransferase activity)|entrezgene/locuslink:2796446(identity) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_010112.1|refseq:WP_010938190.1|ensemblbacteria:AAS95371(transcript)|ensemblbacteria:DVU_0891(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794203(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:M0XYPsqslSPJ4v3xp2CUfwXMxuA882 rogid:w2S2MRSGsipunb/zk1q0Qm1ZDDs882 intact-crc:2D1213FAB674D042|rigid:WjmwuseyKjUv5kpoJZH1JZsU+8w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726V1 uniprotkb:Q729I1 intact:EBI-10087759|ensemblbacteria:AAS97476 intact:EBI-10065244|ensemblbacteria:AAS96843 psi-mi:q726v1_desvh(display_long)|uniprotkb:DVU_3005(locus name) psi-mi:q729i1_desvh(display_long)|uniprotkb:DVU_2370(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087756 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000653(DegT/DnrJ/EryC1/StrS aminotransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_012216.1|refseq:WP_010940264.1|ensemblbacteria:AAS97476(transcript)|ensemblbacteria:DVU_3005(gene)|go:"GO:0008483"(transaminase activity)|entrezgene/locuslink:2793718(identity) interpro:IPR005632("Outer membrane chaperone Skp (OmpH)")|interpro:IPR024930|refseq:YP_011583.1|refseq:WP_010939643.1|ensemblbacteria:AAS96843(transcript)|ensemblbacteria:DVU_2370(gene)|go:"GO:0051082"(unfolded protein binding)|entrezgene/locuslink:2796103(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:E/c5frXcx5GoC1Wa1DokTFt1Zw8882 rogid:Aly50S+htbeikloVF87gXN0icKE882 intact-crc:00F2E986C602BD9A|rigid:RKkbIYc6Hw2I6J+I7Yvaiali1NI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726V1 uniprotkb:Q72DX1 intact:EBI-10087759|ensemblbacteria:AAS97476 intact:EBI-10068330|ensemblbacteria:AAS95288 psi-mi:q726v1_desvh(display_long)|uniprotkb:DVU_3005(locus name) psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087756 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000653(DegT/DnrJ/EryC1/StrS aminotransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_012216.1|refseq:WP_010940264.1|ensemblbacteria:AAS97476(transcript)|ensemblbacteria:DVU_3005(gene)|go:"GO:0008483"(transaminase activity)|entrezgene/locuslink:2793718(identity) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928|entrezgene/locuslink:2796531(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:E/c5frXcx5GoC1Wa1DokTFt1Zw8882 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 intact-crc:00F2E986C602BD9A|rigid:RKkbIYc6Hw2I6J+I7Yvaiali1NI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q72AD3 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10065720|ensemblbacteria:AAS96537 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087776 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.19" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 intact-crc:CF70B8974A0C729E|rigid:RICPMUXpP5aHQwMDcc3Jh53bZVo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q72A92 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10087612|ensemblbacteria:AAS96578 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q72a92_desvh(display_long)|uniprotkb:DVU_2105(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087776 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) refseq:YP_011318.1|ensemblbacteria:AAS96578(transcript)|ensemblbacteria:DVU_2105(gene)|entrezgene/locuslink:2793377(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:JcyL2NcJci/cT5X6RwKQ1/Qy2rU882 intact-crc:CF70B8974A0C729E|rigid:RICPMUXpP5aHQwMDcc3Jh53bZVo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q72A93 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087776 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:CF70B8974A0C729E|rigid:RICPMUXpP5aHQwMDcc3Jh53bZVo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q72CV4 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10065903|ensemblbacteria:AAS95657 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q72cv4_desvh(display_long)|uniprotkb:DVU_1179(locus name)|uniprotkb:aor(gene name)|psi-mi:aor(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087776 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|refseq:YP_010398.1|refseq:WP_010938476.1|ensemblbacteria:AAS95657(transcript)|ensemblbacteria:DVU_1179(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2796664(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.19" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid://UHaftptjuUgn+rNqOh5dzqgdY882 intact-crc:CF70B8974A0C729E|rigid:RICPMUXpP5aHQwMDcc3Jh53bZVo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q72EV1 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10087619|ensemblbacteria:AAS94950 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q72ev1_desvh(display_long)|uniprotkb:DVU_0467(locus name)|uniprotkb:trpD(gene name)|psi-mi:trpD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087776 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR000312(Glycosyl transferase, family 3)|interpro:IPR005940(Anthranilate phosphoribosyl transferase)|interpro:IPR017459(Glycosyl transferase, family 3, N-terminal)|refseq:YP_009691.1|refseq:WP_010937774.1|ensemblbacteria:AAS94950(transcript)|ensemblbacteria:DVU_0467(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004048"(anthranilate phosphoribosyltransferase activity)|interpro:IPR035902|interpro:IPR036320|entrezgene/locuslink:2793608(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.17" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:E4h1EG+898EE3/cHWn+uXX8jK6s882 intact-crc:CF70B8974A0C729E|rigid:RICPMUXpP5aHQwMDcc3Jh53bZVo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q72B50 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10067283|ensemblbacteria:AAS96265 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:q72b50_desvh(display_long)|uniprotkb:Sigma-70(gene name synonym)|uniprotkb:DVU_1788(locus name)|uniprotkb:rpoD(gene name)|psi-mi:rpoD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087805 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007127(RNA polymerase sigma factor 70, region 1.1)|interpro:IPR007624(RNA polymerase sigma-70 region 3)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR009042(RNA polymerase sigma-70 region 1.2)|interpro:IPR012760(RNA polymerase sigma factor RpoD, C-terminal)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|interpro:IPR028630|refseq:YP_011006.1|refseq:WP_010939076.1|ensemblbacteria:AAS96265(transcript)|ensemblbacteria:DVU_1788(gene)|go:"GO:0001123"|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016987"(sigma factor activity)|interpro:IPR036388|interpro:IPR042189|entrezgene/locuslink:2793314(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.10" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:uXlgHdylMF0gkzY6Dq/5S1/2Dzw882 intact-crc:27A24D4533ACAF64|rigid:KM2JueHKaUj2eaAe+a4VRsEl8v8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726V0 uniprotkb:P62470 intact:EBI-10070649|ensemblbacteria:AAS97477 intact:EBI-10087382|ensemblbacteria:AAS96984 psi-mi:q726v0_desvh(display_long)|uniprotkb:DVU_3006(locus name) psi-mi:rsmh_desvh(display_long)|uniprotkb:"16S rRNA m(4)C1402 methyltransferase"(gene name synonym)|uniprotkb:mraW(gene name synonym)|uniprotkb:"rRNA (cytosine-N(4)-)-methyltransferase RsmH"(gene name synonym)|uniprotkb:DVU_2512(locus name)|uniprotkb:rsmH(gene name)|psi-mi:rsmH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087743 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR025714|interpro:IPR029044|interpro:IPR029063|refseq:YP_012217.1|refseq:WP_010940265.1|ensemblbacteria:AAS97477(transcript)|ensemblbacteria:DVU_3006(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|entrezgene/locuslink:2793719(identity) interpro:IPR002903(Bacterial methyltransferase)|interpro:IPR023397|interpro:IPR029063|refseq:YP_011724.1|refseq:WP_010939782.1|ensemblbacteria:AAS96984(transcript)|ensemblbacteria:DVU_2512(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0070475"(rRNA base methylation)|go:"GO:0071424"("rRNA (cytosine-N4-)-methyltransferase activity")|entrezgene/locuslink:2795640(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:mYM7lchB09rIDxmq89XTGcpMboo882 rogid:ag2/mrlGdwEhdk9q0wbxShLqb0o882 intact-crc:868877078B6BD5DC|rigid:GUECvqWqrQsTh0AJA/zRmwSPoJI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727R3 uniprotkb:Q729X3 intact:EBI-10087860|ensemblbacteria:AAS97264 intact:EBI-10067439|ensemblbacteria:AAS96697 psi-mi:q727r3_desvh(display_long)|uniprotkb:DVU_2792(locus name) psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087857 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_012004.1|refseq:WP_010940058.1|ensemblbacteria:AAS97264(transcript)|ensemblbacteria:DVU_2792(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016020"(membrane)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR010208(Electron transport complex, RnfC)|interpro:IPR037225|entrezgene/locuslink:2795378(identity) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:/o593KQOXeGnA5FT18EfkKLyMHo882 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 intact-crc:F88DF93E018C4B35|rigid:OvaVvGpI97lH0ADBZJgcOO/jMoE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727L6 uniprotkb:Q72CT0 intact:EBI-10066483|ensemblbacteria:AAS97311 intact:EBI-10065973|ensemblbacteria:AAS95681 psi-mi:q727l6_desvh(display_long)|uniprotkb:DVU_2839(locus name) psi-mi:glya_desvh(display_long)|uniprotkb:DVU_1203(locus name)|uniprotkb:glyA(gene name)|psi-mi:glyA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087844 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_012051.1|refseq:WP_010940105.1|ensemblbacteria:AAS97311(transcript)|ensemblbacteria:DVU_2839(gene)|entrezgene/locuslink:2796393(identity) interpro:IPR001085(Glycine hydroxymethyltransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR019798|refseq:YP_010422.1|refseq:WP_010938499.1|ensemblbacteria:AAS95681(transcript)|ensemblbacteria:DVU_1203(gene)|go:"GO:0004372"(glycine hydroxymethyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019264"(glycine biosynthetic process from serine)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0035999"(tetrahydrofolate interconversion)|interpro:IPR039429|entrezgene/locuslink:2796660(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:P9rj9D/b3vmfRz+AloNg5LuHfuY882 rogid:qvZABnUa4OAh0x1pR2kjrAk4Hrk882 intact-crc:D122A47DC6CD26D0|rigid:CxDavTsE7N8dbWbp5JDqScYm/nY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B50 uniprotkb:Q727C7 intact:EBI-10067283|ensemblbacteria:AAS96265 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q72b50_desvh(display_long)|uniprotkb:Sigma-70(gene name synonym)|uniprotkb:DVU_1788(locus name)|uniprotkb:rpoD(gene name)|psi-mi:rpoD(display_short) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087818 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007127(RNA polymerase sigma factor 70, region 1.1)|interpro:IPR007624(RNA polymerase sigma-70 region 3)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR009042(RNA polymerase sigma-70 region 1.2)|interpro:IPR012760(RNA polymerase sigma factor RpoD, C-terminal)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|interpro:IPR028630|refseq:YP_011006.1|refseq:WP_010939076.1|ensemblbacteria:AAS96265(transcript)|ensemblbacteria:DVU_1788(gene)|go:"GO:0001123"|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016987"(sigma factor activity)|interpro:IPR036388|interpro:IPR042189|entrezgene/locuslink:2793314(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.09" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:uXlgHdylMF0gkzY6Dq/5S1/2Dzw882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:4A400B77EBA11DEF|rigid:iMDRvatqY6O8TE9LfFUkOocXR0Q false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727T9 uniprotkb:Q729I1 intact:EBI-10066426|ensemblbacteria:AAS97237 intact:EBI-10065244|ensemblbacteria:AAS96843 psi-mi:q727t9_desvh(display_long)|uniprotkb:DVU_2765(locus name) psi-mi:q729i1_desvh(display_long)|uniprotkb:DVU_2370(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087873 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001279(Beta-lactamase-like)|refseq:YP_011977.1|refseq:WP_010940031.1|ensemblbacteria:AAS97237(transcript)|ensemblbacteria:DVU_2765(gene)|interpro:IPR036866|entrezgene/locuslink:2796315(identity) interpro:IPR005632("Outer membrane chaperone Skp (OmpH)")|interpro:IPR024930|refseq:YP_011583.1|refseq:WP_010939643.1|ensemblbacteria:AAS96843(transcript)|ensemblbacteria:DVU_2370(gene)|go:"GO:0051082"(unfolded protein binding)|entrezgene/locuslink:2796103(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:1lSzPGPfrXcrxcozEq34U5edV1U882 rogid:Aly50S+htbeikloVF87gXN0icKE882 intact-crc:91AD2EE2D312488B|rigid:46OYog/NxQOXpukYSip8ow1miD4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ES5 uniprotkb:Q727W9 intact:EBI-10087949|ensemblbacteria:AAS94976 intact:EBI-10068901|ensemblbacteria:AAS97207 psi-mi:q72es5_desvh(display_long)|uniprotkb:DVU_0494(locus name) psi-mi:q727w9_desvh(display_long)|uniprotkb:Phenylacetyl-CoA ligase(gene name synonym)|uniprotkb:DVU_2735(locus name)|uniprotkb:paaK-3(gene name)|psi-mi:paaK-3(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087946 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020578|interpro:IPR024169|refseq:YP_009717.1|refseq:WP_010937800.1|ensemblbacteria:AAS94976(transcript)|ensemblbacteria:DVU_0494(gene)|go:"GO:0008483"(transaminase activity)|entrezgene/locuslink:2794722(identity) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011880(Phenylacetate-CoA ligase)|interpro:IPR028154|refseq:YP_011947.1|refseq:WP_010940001.1|ensemblbacteria:AAS97207(transcript)|ensemblbacteria:DVU_2735(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0010124"(phenylacetate catabolic process)|go:"GO:0047475"(phenylacetate-CoA ligase activity)|entrezgene/locuslink:2795937(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.11" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:SqYmSI/1aehXmns52M32WUK8MEA882 rogid:ZYnoclagAsUMSmwkiKtKTHeSsBo882 intact-crc:110EECA3580F936F|rigid:If0blQAVa8aMBAx8IeCcs8dTfzE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U9 uniprotkb:Q728Q5 intact:EBI-10087893|ensemblbacteria:AAS97227 intact:EBI-10087889|ensemblbacteria:AAS97020 psi-mi:q727u9_desvh(display_long)|uniprotkb:mqnD(gene name)|psi-mi:mqnD(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnD(gene name synonym)|uniprotkb:DVU_2755(locus name) psi-mi:azor_desvh(display_long)|uniprotkb:FMN-dependent NADH-azoreductase(gene name synonym)|uniprotkb:DVU_2548(locus name)|uniprotkb:Azo-dye reductase(gene name synonym)|uniprotkb:FMN-dependent NADH-azo compound oxidoreductase(gene name synonym)|uniprotkb:azoR(gene name)|psi-mi:azoR(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087886 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940021.1|interpro:IPR003773(Protein of unknown function DUF178)|refseq:YP_011967.1|interpro:IPR030869|ensemblbacteria:AAS97227(transcript)|ensemblbacteria:DVU_2755(gene)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016830"(carbon-carbon lyase activity)|entrezgene/locuslink:2794028(identity) interpro:IPR003680(Flavodoxin-like fold)|interpro:IPR023048|interpro:IPR029039|refseq:YP_011760.1|refseq:WP_010939818.1|ensemblbacteria:AAS97020(transcript)|ensemblbacteria:DVU_2548(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0016652"("oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor")|go:"GO:0016655"("oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor")|entrezgene/locuslink:2796122(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:kFqJ2mbgXpPd0BLli12nl7X4A1I882 rogid:+IwnxVTAKqc9hwKuHx1s7Jocepc882 intact-crc:CEA7F82D8F1E06F6|rigid:2lt/sz7oFBsk2T1CD2Gsrqz1MQc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U9 uniprotkb:Q729C4 intact:EBI-10087893|ensemblbacteria:AAS97227 intact:EBI-10067155|ensemblbacteria:AAS96900 psi-mi:q727u9_desvh(display_long)|uniprotkb:mqnD(gene name)|psi-mi:mqnD(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnD(gene name synonym)|uniprotkb:DVU_2755(locus name) psi-mi:q729c4_desvh(display_long)|uniprotkb:DVU_2427(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087886 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940021.1|interpro:IPR003773(Protein of unknown function DUF178)|refseq:YP_011967.1|interpro:IPR030869|ensemblbacteria:AAS97227(transcript)|ensemblbacteria:DVU_2755(gene)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016830"(carbon-carbon lyase activity)|entrezgene/locuslink:2794028(identity) refseq:YP_011640.1|ensemblbacteria:AAS96900(transcript)|ensemblbacteria:DVU_2427(gene)|entrezgene/locuslink:2794368(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.10" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:kFqJ2mbgXpPd0BLli12nl7X4A1I882 rogid:AAuZ05FpdYBy8r9F3WpZt/Q0NvE882 intact-crc:CEA7F82D8F1E06F6|rigid:2lt/sz7oFBsk2T1CD2Gsrqz1MQc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q728F9 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10087962|ensemblbacteria:AAS97116 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:q728f9_desvh(display_long)|uniprotkb:DVU_2644(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087965 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) refseq:WP_010939913.1|interpro:IPR000524(Bacterial regulatory protein GntR, HTH)|interpro:IPR008920(Fatty acid responsive transcription factor FadR, C-terminal)|interpro:IPR011711(GntR, C-terminal)|refseq:YP_011856.1|ensemblbacteria:AAS97116(transcript)|ensemblbacteria:DVU_2644(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2795700(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.02" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:UGlkkdYmYdDxZZ+tOgL2HHxCutk882 intact-crc:30F545E6DC753781|rigid:bVRu5iufOCDL0Ip4Sd1B+wi3TMI false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728J5 uniprotkb:Q72E00 intact:EBI-10066743|ensemblbacteria:AAS97080 intact:EBI-10070642|ensemblbacteria:AAS95259 psi-mi:q728j5_desvh(display_long)|uniprotkb:DVU_2608(locus name)|uniprotkb:motA-3(gene name)|psi-mi:motA-3(display_short) psi-mi:atpf_desvh(display_long)|uniprotkb:"ATP synthase F(0) sector subunit b"(gene name synonym)|uniprotkb:ATPase subunit I(gene name synonym)|uniprotkb:F-type ATPase subunit b(gene name synonym)|uniprotkb:DVU_0779(locus name)|uniprotkb:atpF(gene name)|psi-mi:atpF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087978 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002898(MotA/TolQ/ExbB proton channel)|interpro:IPR000540(Flagellar motor protein MotA, conserved site)|interpro:IPR022522|refseq:YP_011820.1|refseq:WP_010939877.1|ensemblbacteria:AAS97080(transcript)|ensemblbacteria:DVU_2608(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0006811"(ion transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0097588"(archaeal or bacterial-type flagellum-dependent cell motility)|entrezgene/locuslink:2793904(identity) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|refseq:YP_010000.1|ensemblbacteria:AAS95259(transcript)|ensemblbacteria:DVU_0779(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|entrezgene/locuslink:2794764(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.10" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:GsiE310hXgpqFVVTnMPM9xKhlqQ882 rogid:Fe7TWpt3JNFER7sbHfhmN5UkamY882 intact-crc:5C809BAEE6BC7939|rigid:pq9zVrbrK+DVOWzxqKT9UTpWDj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728J5 uniprotkb:Q72DZ9 intact:EBI-10066743|ensemblbacteria:AAS97080 intact:EBI-10070604|ensemblbacteria:AAS95260 psi-mi:q728j5_desvh(display_long)|uniprotkb:DVU_2608(locus name)|uniprotkb:motA-3(gene name)|psi-mi:motA-3(display_short) psi-mi:q72dz9_desvh(display_long)|uniprotkb:DVU_0780(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087978 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002898(MotA/TolQ/ExbB proton channel)|interpro:IPR000540(Flagellar motor protein MotA, conserved site)|interpro:IPR022522|refseq:YP_011820.1|refseq:WP_010939877.1|ensemblbacteria:AAS97080(transcript)|ensemblbacteria:DVU_2608(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0006811"(ion transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0097588"(archaeal or bacterial-type flagellum-dependent cell motility)|entrezgene/locuslink:2793904(identity) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|interpro:IPR028987|refseq:YP_010001.1|ensemblbacteria:AAS95260(transcript)|ensemblbacteria:DVU_0780(gene)|go:"GO:0015078"(proton transmembrane transporter activity)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)")|entrezgene/locuslink:2794765(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.18" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:GsiE310hXgpqFVVTnMPM9xKhlqQ882 rogid:iawHw4iYKJBHw2AYajd2/PQMxLU882 intact-crc:5C809BAEE6BC7939|rigid:pq9zVrbrK+DVOWzxqKT9UTpWDj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FF5 uniprotkb:Q727W5 intact:EBI-10087927|ensemblbacteria:AAS94742 intact:EBI-10087930|ensemblbacteria:AAS97211 psi-mi:q72ff5_desvh(display_long)|uniprotkb:DVU_0259(locus name) psi-mi:q727w5_desvh(display_long)|uniprotkb:Pyruvate, water dikinase(gene name synonym)|uniprotkb:DVU_2739(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087933 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937568.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR011006(CheY-like)|refseq:YP_009483.1|ensemblbacteria:AAS94742(transcript)|ensemblbacteria:DVU_0259(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2794101(identity) interpro:IPR006319(Phosphoenolpyruvate synthase)|interpro:IPR002192(Pyruvate phosphate dikinase, PEP/pyruvate-binding)|interpro:IPR008279(PEP-utilising enzyme, mobile region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|ensemblbacteria:AAS97211(transcript)|ensemblbacteria:DVU_2739(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006090"(pyruvate metabolic process)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0008986"(pyruvate, water dikinase activity)|interpro:IPR036637|entrezgene/locuslink:2795941(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.02" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:XMlzvvO1z0LpSxD/QapDjJNTdbI882 rogid:01uvXEFPwY84J9GHo2ETMGAXPRc882 intact-crc:47D28895FDEEE665|rigid:YRJKrgrGpP5qhLz19yxavMytl6Q false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728V7 uniprotkb:Q72G40 intact:EBI-10072039|ensemblbacteria:AAS96967 intact:EBI-10088036|ensemblbacteria:AAS94505 psi-mi:q728v7_desvh(display_long)|uniprotkb:DVU_2495(locus name) psi-mi:q72g40_desvh(display_long)|uniprotkb:DVU_0021(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088039 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003736(Phenylacetic acid degradation-related protein)|interpro:IPR006683(Thioesterase superfamily)|interpro:IPR029069|refseq:YP_011707.1|refseq:WP_010939765.1|ensemblbacteria:AAS96967(transcript)|ensemblbacteria:DVU_2495(gene)|entrezgene/locuslink:2795463(identity) interpro:IPR029063|refseq:YP_009246.1|ensemblbacteria:AAS94505(transcript)|ensemblbacteria:DVU_0021(gene)|entrezgene/locuslink:2794953(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:GK/+jU073neEuLMw3ZVsr+sq61Y882 rogid:/ibU8PD6J6J9I2+F4cSkYJf6Odw882 intact-crc:2ECA9A04558A6823|rigid:A16+sBL5KrdHLBwATevoJJ38eBE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728V7 uniprotkb:Q72AE2 intact:EBI-10072039|ensemblbacteria:AAS96967 intact:EBI-10067762|ensemblbacteria:AAS96528 psi-mi:q728v7_desvh(display_long)|uniprotkb:DVU_2495(locus name) psi-mi:q72ae2_desvh(display_long)|uniprotkb:metG(gene name)|psi-mi:metG(display_short)|uniprotkb:Methionyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2055(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088039 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003736(Phenylacetic acid degradation-related protein)|interpro:IPR006683(Thioesterase superfamily)|interpro:IPR029069|refseq:YP_011707.1|refseq:WP_010939765.1|ensemblbacteria:AAS96967(transcript)|ensemblbacteria:DVU_2495(gene)|entrezgene/locuslink:2795463(identity) interpro:IPR041872|interpro:IPR033911|interpro:IPR002547(tRNA-binding region)|interpro:IPR004495(Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR014758(Methionyl-tRNA synthetase, class Ia, N-terminal)|interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|interpro:IPR023457|refseq:WP_010939333.1|refseq:YP_011268.1|interpro:IPR032678|ensemblbacteria:AAS96528(transcript)|ensemblbacteria:DVU_2055(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004825"(methionine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006431"(methionyl-tRNA aminoacylation)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2796479(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:GK/+jU073neEuLMw3ZVsr+sq61Y882 rogid:h1kUEOwSshrNiJpCu6I400O/Ay0882 intact-crc:2ECA9A04558A6823|rigid:A16+sBL5KrdHLBwATevoJJ38eBE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Q6 uniprotkb:Q728Q5 intact:EBI-10066815|ensemblbacteria:AAS97019 intact:EBI-10087889|ensemblbacteria:AAS97020 psi-mi:q728q6_desvh(display_long)|uniprotkb:DVU_2547(locus name) psi-mi:azor_desvh(display_long)|uniprotkb:FMN-dependent NADH-azoreductase(gene name synonym)|uniprotkb:DVU_2548(locus name)|uniprotkb:Azo-dye reductase(gene name synonym)|uniprotkb:FMN-dependent NADH-azo compound oxidoreductase(gene name synonym)|uniprotkb:azoR(gene name)|psi-mi:azoR(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087995 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000595(Cyclic nucleotide-binding)|interpro:IPR012318(Helix-turn-helix motif, Crp-type)|interpro:IPR014710(RmlC-like jelly roll fold)|interpro:IPR018490|refseq:YP_011759.1|refseq:WP_010939817.1|ensemblbacteria:AAS97019(transcript)|ensemblbacteria:DVU_2547(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2796121(identity) interpro:IPR003680(Flavodoxin-like fold)|interpro:IPR023048|interpro:IPR029039|refseq:YP_011760.1|refseq:WP_010939818.1|ensemblbacteria:AAS97020(transcript)|ensemblbacteria:DVU_2548(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0016652"("oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor")|go:"GO:0016655"("oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor")|entrezgene/locuslink:2796122(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Dm3+udgUiw/Fagb3qNlyEMP+JlI882 rogid:+IwnxVTAKqc9hwKuHx1s7Jocepc882 intact-crc:C3B0C8658A46B499|rigid:lLqwYhPlSV8bFUXZ/M0Ga7+asLY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Q6 uniprotkb:Q72C73 intact:EBI-10066815|ensemblbacteria:AAS97019 intact:EBI-10087998|ensemblbacteria:AAS95889 psi-mi:q728q6_desvh(display_long)|uniprotkb:DVU_2547(locus name) psi-mi:q72c73_desvh(display_long)|uniprotkb:DVU_1411(locus name)|uniprotkb:thiC(gene name)|psi-mi:thiC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087995 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000595(Cyclic nucleotide-binding)|interpro:IPR012318(Helix-turn-helix motif, Crp-type)|interpro:IPR014710(RmlC-like jelly roll fold)|interpro:IPR018490|refseq:YP_011759.1|refseq:WP_010939817.1|ensemblbacteria:AAS97019(transcript)|ensemblbacteria:DVU_2547(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2796121(identity) interpro:IPR002817(Thiamine biosynthesis protein ThiC)|refseq:YP_010630.1|refseq:WP_010938704.1|ensemblbacteria:AAS95889(transcript)|ensemblbacteria:DVU_1411(gene)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0016829"(lyase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR038521|entrezgene/locuslink:2794955(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Dm3+udgUiw/Fagb3qNlyEMP+JlI882 rogid:AislqSLTTBJQfn2wam+sVAEOL1s882 intact-crc:C3B0C8658A46B499|rigid:lLqwYhPlSV8bFUXZ/M0Ga7+asLY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728T8 uniprotkb:Q728L3 intact:EBI-10088022|ensemblbacteria:AAS96986 intact:EBI-10088016|ensemblbacteria:AAS97062 psi-mi:q728t8_desvh(display_long)|uniprotkb:DVU_2514(locus name)|uniprotkb:pyk(gene name)|psi-mi:pyk(display_short) psi-mi:q728l3_desvh(display_long)|uniprotkb:DVU_2590(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088019 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR015806(Pyruvate kinase, beta-barrel)|interpro:IPR001697(Pyruvate kinase)|interpro:IPR011037(Pyruvate kinase, beta-barrel-like)|interpro:IPR015793(Pyruvate kinase, barrel)|interpro:IPR015795(Pyruvate kinase, C-terminal-like)|interpro:IPR015813(Pyruvate/Phosphoenolpyruvate kinase, catalytic core)|refseq:YP_011726.1|refseq:WP_010939784.1|ensemblbacteria:AAS96986(transcript)|ensemblbacteria:DVU_2514(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004743"(pyruvate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016301"(kinase activity)|go:"GO:0030955"(potassium ion binding)|interpro:IPR036918|interpro:IPR040442|entrezgene/locuslink:2795604(identity) interpro:IPR007380(Protein of unknown function DUF438)|interpro:IPR012312(Hemerythrin/HHE cation-binding motif)|interpro:IPR015077(Region of unknown function DUF1858)|refseq:YP_011802.1|refseq:WP_010939860.1|ensemblbacteria:AAS97062(transcript)|ensemblbacteria:DVU_2590(gene)|interpro:IPR038062|interpro:IPR035965|entrezgene/locuslink:2796368(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:RyxWtPkANypzWKKv4Nc9Z+wdL7w882 rogid:TPuACmZZZCK1CTk2yCp13RzsrLk882 intact-crc:2484E76EDE345780|rigid:AMGieLka6Q4lZ1FPULTIkfrFIAo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729E1 uniprotkb:Q72AA5 intact:EBI-10088092|ensemblbacteria:AAS96883 intact:EBI-10088086|ensemblbacteria:AAS96565 psi-mi:q729e1_desvh(display_long)|uniprotkb:DVU_2410(locus name)|uniprotkb:sodB(gene name)|psi-mi:sodB(display_short) psi-mi:q72aa5_desvh(display_long)|uniprotkb:DVU_2092(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088089 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001189(Manganese and iron superoxide dismutase)|interpro:IPR019831|interpro:IPR019832|interpro:IPR019833|ensemblbacteria:AAS96883(transcript)|ensemblbacteria:DVU_2410(gene)|go:"GO:0004784"(superoxide dismutase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR036314|interpro:IPR036324|entrezgene/locuslink:2794495(identity) interpro:IPR000594(UBA/THIF-type NAD/FAD binding fold)|interpro:IPR012729(Thiamine biosynthesis protein ThiF)|refseq:YP_011305.1|refseq:WP_010939369.1|ensemblbacteria:AAS96565(transcript)|ensemblbacteria:DVU_2092(gene)|go:"GO:0008641"(ubiquitin-like modifier activating enzyme activity)|interpro:IPR035985|entrezgene/locuslink:2795468(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.05" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:rvEwanxYVKr+sawXa1h6dA96V9k882 rogid:dNl1ecIUBY0LUcE0Jt1oyfb8cv0882 intact-crc:2ECCD51C5A6A3E8D|rigid:2yBm2D69vgDqp3GYjvyyAohSdc8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F1 uniprotkb:Q726S3 intact:EBI-10067171|ensemblbacteria:AAS96873 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088106 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794485(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:2399FCB9A8C3425E|rigid:wNO/pnkcBNWfTZM1s4LfcYVXnZ0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F3 uniprotkb:Q72E02 intact:EBI-10067211|ensemblbacteria:AAS96871 intact:EBI-10070589|ensemblbacteria:AAS95257 psi-mi:q729f3_desvh(display_long)|uniprotkb:DVU_2398(locus name) psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088119 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003251(Rubrerythrin)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_011611.1|refseq:WP_010939670.1|ensemblbacteria:AAS96871(transcript)|ensemblbacteria:DVU_2398(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2794483(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121|entrezgene/locuslink:2794762(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:5c3Z5OiIk/A6fVPUkfms43vqlOA882 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 intact-crc:356AF3E399534C37|rigid:wYObS8KegUqxPUpb1JJ5vYGZmyY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728X1 uniprotkb:Q729E9 intact:EBI-10066870|ensemblbacteria:AAS96953 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q728x1_desvh(display_long)|uniprotkb:DVU_2481(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088056 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|refseq:YP_011693.1|ensemblbacteria:AAS96953(transcript)|ensemblbacteria:DVU_2481(gene)|entrezgene/locuslink:2795663(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2794487(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Xai4sfPBlGz5FuIUd3QRPDMEtyk882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:0F0F587C5A5F2097|rigid:2b3dWAt6vymLiNck3aUp2Ro2hXQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728X1 uniprotkb:Q72DT0 intact:EBI-10066870|ensemblbacteria:AAS96953 intact:EBI-10070311|ensemblbacteria:AAS95329 psi-mi:q728x1_desvh(display_long)|uniprotkb:DVU_2481(locus name) psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088056 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|refseq:YP_011693.1|ensemblbacteria:AAS96953(transcript)|ensemblbacteria:DVU_2481(gene)|entrezgene/locuslink:2795663(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Xai4sfPBlGz5FuIUd3QRPDMEtyk882 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 intact-crc:0F0F587C5A5F2097|rigid:2b3dWAt6vymLiNck3aUp2Ro2hXQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q1 uniprotkb:Q726S4 intact:EBI-10087343|ensemblbacteria:AAS96772 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088198 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.16" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:D9A5E2918A274BEB|rigid:6zVhHP2fCDYyBqTgYu2l/KBPRvg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q1 uniprotkb:Q727A8 intact:EBI-10087343|ensemblbacteria:AAS96772 intact:EBI-10065746|ensemblbacteria:AAS97419 psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088198 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 intact-crc:D9A5E2918A274BEB|rigid:6zVhHP2fCDYyBqTgYu2l/KBPRvg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q1 uniprotkb:Q72A93 intact:EBI-10087343|ensemblbacteria:AAS96772 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088198 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.14" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:D9A5E2918A274BEB|rigid:6zVhHP2fCDYyBqTgYu2l/KBPRvg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q1 uniprotkb:Q726S3 intact:EBI-10087343|ensemblbacteria:AAS96772 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088198 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.18" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:D9A5E2918A274BEB|rigid:6zVhHP2fCDYyBqTgYu2l/KBPRvg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q1 uniprotkb:Q72EV1 intact:EBI-10087343|ensemblbacteria:AAS96772 intact:EBI-10087619|ensemblbacteria:AAS94950 psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:q72ev1_desvh(display_long)|uniprotkb:DVU_0467(locus name)|uniprotkb:trpD(gene name)|psi-mi:trpD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088198 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) interpro:IPR000312(Glycosyl transferase, family 3)|interpro:IPR005940(Anthranilate phosphoribosyl transferase)|interpro:IPR017459(Glycosyl transferase, family 3, N-terminal)|refseq:YP_009691.1|refseq:WP_010937774.1|ensemblbacteria:AAS94950(transcript)|ensemblbacteria:DVU_0467(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004048"(anthranilate phosphoribosyltransferase activity)|interpro:IPR035902|interpro:IPR036320|entrezgene/locuslink:2793608(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.23" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 rogid:E4h1EG+898EE3/cHWn+uXX8jK6s882 intact-crc:D9A5E2918A274BEB|rigid:6zVhHP2fCDYyBqTgYu2l/KBPRvg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729H5 uniprotkb:Q72C87 intact:EBI-10088135|ensemblbacteria:AAS96849 intact:EBI-10069359|ensemblbacteria:AAS95875 psi-mi:q729h5_desvh(display_long)|uniprotkb:Lysyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2376(locus name)|uniprotkb:lysS(gene name)|psi-mi:lysS(display_short) psi-mi:q72c87_desvh(display_long)|uniprotkb:DVU_1397(locus name)|uniprotkb:bfr(gene name)|psi-mi:bfr(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088132 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_041722967.1|interpro:IPR002313(Lysyl-tRNA synthetase, class II)|interpro:IPR004364("Aminoacyl-tRNA synthetase, class II (D, K and N)")|interpro:IPR004365(Nucleic acid binding, OB-fold, tRNA/helicase-type)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR018149|interpro:IPR044136|ensemblbacteria:AAS96849(transcript)|ensemblbacteria:DVU_2376(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004824"(lysine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006430"(lysyl-tRNA aminoacylation)|entrezgene/locuslink:2796109(identity) interpro:IPR002024(Bacterioferritin)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_010616.1|refseq:WP_010938692.1|ensemblbacteria:AAS95875(transcript)|ensemblbacteria:DVU_1397(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0006826"(iron ion transport)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|entrezgene/locuslink:2794797(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.10" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:MGCKqNHEGz5w6MDlk+Ez2dxez6I882 rogid:/YEQxIIVEft2Xb4CEZccQMQlPoM882 intact-crc:619151C0A9807595|rigid:qg2dwwU4mgW4t1S26HwLSr6Veuc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729H5 uniprotkb:Q726M2 intact:EBI-10088135|ensemblbacteria:AAS96849 intact:EBI-10088139|ensemblbacteria:AAS97555 psi-mi:q729h5_desvh(display_long)|uniprotkb:Lysyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2376(locus name)|uniprotkb:lysS(gene name)|psi-mi:lysS(display_short) psi-mi:q726m2_desvh(display_long)|uniprotkb:DVU_3084(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088132 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_041722967.1|interpro:IPR002313(Lysyl-tRNA synthetase, class II)|interpro:IPR004364("Aminoacyl-tRNA synthetase, class II (D, K and N)")|interpro:IPR004365(Nucleic acid binding, OB-fold, tRNA/helicase-type)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR018149|interpro:IPR044136|ensemblbacteria:AAS96849(transcript)|ensemblbacteria:DVU_2376(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004824"(lysine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006430"(lysyl-tRNA aminoacylation)|entrezgene/locuslink:2796109(identity) interpro:IPR041920|interpro:IPR008807(ROSMUCR transcriptional regulator)|refseq:YP_012295.1|refseq:WP_010940343.1|ensemblbacteria:AAS97555(transcript)|ensemblbacteria:DVU_3084(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|entrezgene/locuslink:2796435(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.23" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:MGCKqNHEGz5w6MDlk+Ez2dxez6I882 rogid:isunD1s4g0x4W1Nvt8UUt+9JWLk882 intact-crc:619151C0A9807595|rigid:qg2dwwU4mgW4t1S26HwLSr6Veuc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729H5 uniprotkb:Q72ER6 intact:EBI-10088135|ensemblbacteria:AAS96849 intact:EBI-10065670|ensemblbacteria:AAS94985 psi-mi:q729h5_desvh(display_long)|uniprotkb:Lysyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2376(locus name)|uniprotkb:lysS(gene name)|psi-mi:lysS(display_short) psi-mi:pnp_desvh(display_long)|uniprotkb:Polynucleotide phosphorylase(gene name synonym)|uniprotkb:DVU_0503(locus name)|uniprotkb:pnp(gene name)|psi-mi:pnp(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088132 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_041722967.1|interpro:IPR002313(Lysyl-tRNA synthetase, class II)|interpro:IPR004364("Aminoacyl-tRNA synthetase, class II (D, K and N)")|interpro:IPR004365(Nucleic acid binding, OB-fold, tRNA/helicase-type)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR018149|interpro:IPR044136|ensemblbacteria:AAS96849(transcript)|ensemblbacteria:DVU_2376(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004824"(lysine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006430"(lysyl-tRNA aminoacylation)|entrezgene/locuslink:2796109(identity) interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR003029(S1, RNA binding)|interpro:IPR004087(K Homology)|interpro:IPR004088(K Homology, type 1)|interpro:IPR012162(Polyribonucleotide nucleotidyltransferase)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR015847(Exoribonuclease, phosphorolytic domain 2)|interpro:IPR015848(Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type)|interpro:IPR020568|interpro:IPR022967|interpro:IPR027408|refseq:YP_009726.1|refseq:WP_010937809.1|ensemblbacteria:AAS94985(transcript)|ensemblbacteria:DVU_0503(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003723"(RNA binding)|go:"GO:0004654"(polyribonucleotide nucleotidyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006396"(RNA processing)|go:"GO:0006402"(mRNA catabolic process)|interpro:IPR036345|interpro:IPR036612|entrezgene/locuslink:2796763(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.12" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:MGCKqNHEGz5w6MDlk+Ez2dxez6I882 rogid:zmbOa0wmOUU+huiyk2Ug8Pm0pg0882 intact-crc:619151C0A9807595|rigid:qg2dwwU4mgW4t1S26HwLSr6Veuc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729I6 uniprotkb:Q72C62 intact:EBI-10065723|ensemblbacteria:AAS96837 intact:EBI-10069095|ensemblbacteria:AAS95900 psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088160 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.12" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 intact-crc:40CD59AC6E3C086F|rigid:brJfVMPTWMkqDxwGEZUFYC1M+7g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729I6 uniprotkb:Q726K3 intact:EBI-10065723|ensemblbacteria:AAS96837 intact:EBI-10068003|ensemblbacteria:AAS97575 psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088160 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737|entrezgene/locuslink:2795976(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.19" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 intact-crc:40CD59AC6E3C086F|rigid:brJfVMPTWMkqDxwGEZUFYC1M+7g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729I6 uniprotkb:Q729X3 intact:EBI-10065723|ensemblbacteria:AAS96837 intact:EBI-10067439|ensemblbacteria:AAS96697 psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088160 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 intact-crc:40CD59AC6E3C086F|rigid:brJfVMPTWMkqDxwGEZUFYC1M+7g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CA6 uniprotkb:Q729N4 intact:EBI-10069692|ensemblbacteria:AAS95856 intact:EBI-10088184|ensemblbacteria:AAS96789 psi-mi:ilvc_desvh(display_long)|uniprotkb:Acetohydroxy-acid isomeroreductase(gene name synonym)|uniprotkb:Alpha-keto-beta-hydroxylacyl reductoisomerase(gene name synonym)|uniprotkb:Ketol-acid reductoisomerase type 1(gene name synonym)|uniprotkb:Ketol-acid reductoisomerase type I(gene name synonym)|uniprotkb:DVU_1378(locus name)|uniprotkb:ilvC(gene name)|psi-mi:ilvC(display_short) psi-mi:q729n4_desvh(display_long)|uniprotkb:DVU_2316(locus name)|uniprotkb:topB(gene name)|psi-mi:topB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088181 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000506(Acetohydroxy acid isomeroreductase C-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR013023(Acetohydroxy acid isomeroreductase)|interpro:IPR013116(Acetohydroxy acid isomeroreductase, catalytic)|refseq:YP_010597.1|refseq:WP_010938673.1|ensemblbacteria:AAS95856(transcript)|ensemblbacteria:DVU_1378(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004455"(ketol-acid reductoisomerase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0050661"(NADP binding)|interpro:IPR014359(Ketol-acid reductoisomerase, gammaproteobacteria)|interpro:IPR036291|entrezgene/locuslink:2793511(identity) interpro:IPR013824(DNA topoisomerase, type IA, central region, subdomain 1)|interpro:IPR013826(DNA topoisomerase, type IA, central region, subdomain 3)|interpro:IPR034144|interpro:IPR000380(DNA topoisomerase, type IA, core)|interpro:IPR003601(DNA topoisomerase, type IA, domain 2)|interpro:IPR003602(DNA topoisomerase, type IA, DNA-binding)|interpro:IPR006171(TOPRIM)|interpro:IPR013497(DNA topoisomerase, type IA, central)|interpro:IPR023405|interpro:IPR023406|interpro:IPR025589|refseq:YP_011529.1|refseq:WP_010939590.1|ensemblbacteria:AAS96789(transcript)|ensemblbacteria:DVU_2316(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003917"("DNA topoisomerase type I (single strand cut, ATP-independent) activity")|go:"GO:0006265"(DNA topological change)|interpro:IPR013825(DNA topoisomerase, type IA, central region, subdomain 2)|entrezgene/locuslink:2795276(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.05" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:td23Z6Z3fGNd6zS6PyuZhAslKRo882 rogid:g5Ls9eknaCJn/8ixrXpCuCnvyQs882 intact-crc:834E58F10B67C0DB|rigid:Eg1YqpCkZlvVStSGUdZX5kNLka4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WL5 uniprotkb:Q729X3 intact:EBI-10088259|ensemblbacteria:AAS94381 intact:EBI-10067439|ensemblbacteria:AAS96697 psi-mi:q72wl5_desvh(display_long)|uniprotkb:DVUA0074(locus name) psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088262 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000863(Sulphotransferase)|interpro:IPR027417|refseq:YP_009114.1|refseq:WP_011176652.1|ensemblbacteria:AAS94381(transcript)|ensemblbacteria:DVUA0074(gene)|go:"GO:0008146"(sulfotransferase activity)|entrezgene/locuslink:2781604(identity) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.10" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Dshy1tNQyuHwJlQRha2z2lpU5Cc882 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 intact-crc:C16B82B0F93A17D0|rigid:M7sf8ed5D4sJTRk+i6S4x0gUbvU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BR6 uniprotkb:Q72A22 intact:EBI-10088275|ensemblbacteria:AAS96046 intact:EBI-10088278|ensemblbacteria:AAS96648 psi-mi:q72br6_desvh(display_long)|uniprotkb:DVU_1568(locus name) psi-mi:q72a22_desvh(display_long)|uniprotkb:DVU_2175(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088282 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041719|interpro:IPR001519(Ferritin, N-terminal)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_010787.1|refseq:WP_010938859.1|ensemblbacteria:AAS96046(transcript)|ensemblbacteria:DVU_1568(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006826"(iron ion transport)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|entrezgene/locuslink:2793459(identity) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|interpro:IPR029063|refseq:YP_011388.1|refseq:WP_010939452.1|ensemblbacteria:AAS96648(transcript)|ensemblbacteria:DVU_2175(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004518"(nuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR011856(Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal)|interpro:IPR039442|interpro:IPR041635|entrezgene/locuslink:2793400(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.08" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:dkOKVGZLu6vpSHUXqAEfSzHqD6E882 rogid:nY4TFacYZI3q9eQqOF9UFnSku34882 intact-crc:927B8401E18FF305|rigid:TyvEt2B9IH7JzJZn2rU/Iw9ocBA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q8 uniprotkb:Q729R1 intact:EBI-10067332|ensemblbacteria:AAS96764 intact:EBI-10088243|ensemblbacteria:AAS96761 psi-mi:q729q8_desvh(display_long)|uniprotkb:DVU_2291(locus name) psi-mi:q729r1_desvh(display_long)|uniprotkb:DVU_2288(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088246 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|refseq:WP_010939566.1|interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR029014|refseq:YP_011504.1|ensemblbacteria:AAS96764(transcript)|ensemblbacteria:DVU_2291(gene)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2795445(identity) interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|refseq:YP_011501.1|refseq:WP_010939563.1|ensemblbacteria:AAS96761(transcript)|ensemblbacteria:DVU_2288(gene)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795442(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.04" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Yt5P32YlY9IMEma6vpaTTK4+uUc882 rogid:d8NSv+gA11J6vFZuK+Qsf8wWCxw882 intact-crc:ABBE868FC2AE2533|rigid:qputAIzwH2pp2/L4IQjwlcjRC2Q false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q9 uniprotkb:Q729R0 intact:EBI-10067338|ensemblbacteria:AAS96763 intact:EBI-10088230|ensemblbacteria:AAS96762 psi-mi:q729q9_desvh(display_long)|uniprotkb:DVU_2290(locus name) psi-mi:q729r0_desvh(display_long)|uniprotkb:DVU_2289(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088227 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|ensemblbacteria:AAS96763(transcript)|ensemblbacteria:DVU_2290(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|interpro:IPR037232|entrezgene/locuslink:2795444(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_011502.1|refseq:WP_010939564.1|ensemblbacteria:AAS96762(transcript)|ensemblbacteria:DVU_2289(gene)|go:"GO:0016020"(membrane)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR010226(NADH-quinone oxidoreductase, chain I)|entrezgene/locuslink:2795443(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.12" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:vId31Wmn6in1ErXb+Zeb8SIpIjQ882 rogid:05YRWsZVzHyrRNuVW3kTsmdHIeo882 intact-crc:55BE3A219E6A5D61|rigid:OSVFF6Kv8EqiQG35InTrCEaV/00 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D45 uniprotkb:Q72AF3 intact:EBI-10069077|ensemblbacteria:AAS95565 intact:EBI-10067789|ensemblbacteria:AAS96517 psi-mi:q72d45_desvh(display_long)|uniprotkb:DVU_1085(locus name)|uniprotkb:phoU(gene name)|psi-mi:phoU(display_short) psi-mi:q72af3_desvh(display_long)|uniprotkb:DVU_2042(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088350 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR026022|interpro:IPR028366|refseq:YP_010306.1|refseq:WP_010938384.1|ensemblbacteria:AAS95565(transcript)|ensemblbacteria:DVU_1085(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078|entrezgene/locuslink:2794463(identity) interpro:IPR003812(Filamentation induced by cAMP protein Fic)|refseq:YP_011257.1|ensemblbacteria:AAS96517(transcript)|ensemblbacteria:DVU_2042(gene)|interpro:IPR036597|interpro:IPR040198|entrezgene/locuslink:2794538(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.23" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:8bRa7Ad8xK+IgqVObyH5pX3mm7Q882 rogid:P5MVWuh1nCQqhA4JgfhYztDTh7g882 intact-crc:08FE91DA1621B366|rigid:ofu2/SC/XMRuBY99hFV/pvZWi2c false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AD3 uniprotkb:Q727A8 intact:EBI-10065720|ensemblbacteria:AAS96537 intact:EBI-10065746|ensemblbacteria:AAS97419 psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088325 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.19" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 intact-crc:B04E40C636ED2523|rigid:6Gz9Y/JIu5clOKfht0d4AV/L+wA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AD3 uniprotkb:Q729E7 intact:EBI-10065720|ensemblbacteria:AAS96537 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088325 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794489(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.15" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:B04E40C636ED2523|rigid:6Gz9Y/JIu5clOKfht0d4AV/L+wA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AD3 uniprotkb:Q72CS8 intact:EBI-10065720|ensemblbacteria:AAS96537 intact:EBI-10069623|ensemblbacteria:AAS95683 psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:acp_desvh(display_long)|uniprotkb:DVU_1205(locus name)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088325 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:YP_010424.1|refseq:WP_010938501.1|ensemblbacteria:AAS95683(transcript)|ensemblbacteria:DVU_1205(gene)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036736|entrezgene/locuslink:2796682(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 rogid:PYHz5JnxoFN5sTIaU0qICLcgBZQ882 intact-crc:B04E40C636ED2523|rigid:6Gz9Y/JIu5clOKfht0d4AV/L+wA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AD3 uniprotkb:Q72CV4 intact:EBI-10065720|ensemblbacteria:AAS96537 intact:EBI-10065903|ensemblbacteria:AAS95657 psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:q72cv4_desvh(display_long)|uniprotkb:DVU_1179(locus name)|uniprotkb:aor(gene name)|psi-mi:aor(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088325 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|refseq:YP_010398.1|refseq:WP_010938476.1|ensemblbacteria:AAS95657(transcript)|ensemblbacteria:DVU_1179(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2796664(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 rogid://UHaftptjuUgn+rNqOh5dzqgdY882 intact-crc:B04E40C636ED2523|rigid:6Gz9Y/JIu5clOKfht0d4AV/L+wA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AA3 uniprotkb:Q726M2 intact:EBI-10067665|ensemblbacteria:AAS96567 intact:EBI-10088139|ensemblbacteria:AAS97555 psi-mi:q72aa3_desvh(display_long)|uniprotkb:DVU_2094(locus name)|uniprotkb:thiG(gene name)|psi-mi:thiG(display_short) psi-mi:q726m2_desvh(display_long)|uniprotkb:DVU_3084(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088312 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008867(Thiazole biosynthesis)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:WP_010939371.1|refseq:YP_011307.1|ensemblbacteria:AAS96567(transcript)|ensemblbacteria:DVU_2094(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:1990107"(thiazole synthase activity)|interpro:IPR033983|entrezgene/locuslink:2795470(identity) interpro:IPR041920|interpro:IPR008807(ROSMUCR transcriptional regulator)|refseq:YP_012295.1|refseq:WP_010940343.1|ensemblbacteria:AAS97555(transcript)|ensemblbacteria:DVU_3084(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|entrezgene/locuslink:2796435(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:nwI9TbvedKsctIY5UofhF0JPPl4882 rogid:isunD1s4g0x4W1Nvt8UUt+9JWLk882 intact-crc:B6B548388202B9F7|rigid:p8JGJ4k8Y0LGveCQewvEI5yscks false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E31 uniprotkb:Q72A58 intact:EBI-10088295|ensemblbacteria:AAS95228 intact:EBI-10067393|ensemblbacteria:AAS96612 psi-mi:q72e31_desvh(display_long)|uniprotkb:DVU_0748(locus name)|uniprotkb:acs(gene name)|psi-mi:acs(display_short) psi-mi:q72a58_desvh(display_long)|uniprotkb:DVU_2139(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088299 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011904(Acetate--CoA ligase)|interpro:IPR020845|interpro:IPR025110|refseq:YP_009969.1|interpro:IPR032387|refseq:WP_010938049.1|ensemblbacteria:AAS95228(transcript)|ensemblbacteria:DVU_0748(gene)|go:"GO:0003987"(acetate-CoA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016208"(AMP binding)|go:"GO:0019427"(acetyl-CoA biosynthetic process from acetate)|entrezgene/locuslink:2794966(identity) interpro:IPR000286(Histone deacetylase superfamily)|interpro:IPR023801|refseq:YP_011352.1|refseq:WP_010939416.1|ensemblbacteria:AAS96612(transcript)|ensemblbacteria:DVU_2139(gene)|interpro:IPR023696|interpro:IPR037138|entrezgene/locuslink:2794218(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.08" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:/YqUvOje5EJ8Msri20g6vrzgNVY882 rogid:wIrpH05ijl4wwiq8kzb2PBhwt44882 intact-crc:66CDCEE4AAA5785A|rigid:Y5MyJi3E0YEfX+piPsXzVRUuP9U false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AK9 uniprotkb:Q72A89 intact:EBI-10088363|ensemblbacteria:AAS96459 intact:EBI-10088372|ensemblbacteria:AAS96581 psi-mi:q72ak9_desvh(display_long)|uniprotkb:DVU_1983(locus name) psi-mi:q72a89_desvh(display_long)|uniprotkb:DVU_2108(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088369 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002575(Aminoglycoside phosphotransferase)|interpro:IPR011009(Protein kinase-like)|refseq:YP_011200.1|refseq:WP_010939269.1|ensemblbacteria:AAS96459(transcript)|ensemblbacteria:DVU_1983(gene)|entrezgene/locuslink:2793789(identity) interpro:IPR033913|interpro:IPR003731(Dinitrogenase iron-molybdenum cofactor biosynthesis)|refseq:YP_011321.1|refseq:WP_010939385.1|ensemblbacteria:AAS96581(transcript)|ensemblbacteria:DVU_2108(gene)|go:"GO:0009399"(nitrogen fixation)|interpro:IPR036105|entrezgene/locuslink:2793380(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:MQlm0AmaAwRW7xwL0Ti+UcTVSlk882 rogid:+uf1QymSwGF2gCbSBQ24eZ0yS1M882 intact-crc:590D1CD0D7AA1605|rigid:9HAW50U8XVOnlAyEOcoaSgEmdu8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AK9 uniprotkb:Q72FF5 intact:EBI-10088363|ensemblbacteria:AAS96459 intact:EBI-10087927|ensemblbacteria:AAS94742 psi-mi:q72ak9_desvh(display_long)|uniprotkb:DVU_1983(locus name) psi-mi:q72ff5_desvh(display_long)|uniprotkb:DVU_0259(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088369 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002575(Aminoglycoside phosphotransferase)|interpro:IPR011009(Protein kinase-like)|refseq:YP_011200.1|refseq:WP_010939269.1|ensemblbacteria:AAS96459(transcript)|ensemblbacteria:DVU_1983(gene)|entrezgene/locuslink:2793789(identity) refseq:WP_010937568.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR011006(CheY-like)|refseq:YP_009483.1|ensemblbacteria:AAS94742(transcript)|ensemblbacteria:DVU_0259(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2794101(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:MQlm0AmaAwRW7xwL0Ti+UcTVSlk882 rogid:XMlzvvO1z0LpSxD/QapDjJNTdbI882 intact-crc:590D1CD0D7AA1605|rigid:9HAW50U8XVOnlAyEOcoaSgEmdu8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AK9 uniprotkb:Q726M6 intact:EBI-10088363|ensemblbacteria:AAS96459 intact:EBI-10088366|ensemblbacteria:AAS97551 psi-mi:q72ak9_desvh(display_long)|uniprotkb:DVU_1983(locus name) psi-mi:q726m6_desvh(display_long)|uniprotkb:DVU_3080(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088369 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002575(Aminoglycoside phosphotransferase)|interpro:IPR011009(Protein kinase-like)|refseq:YP_011200.1|refseq:WP_010939269.1|ensemblbacteria:AAS96459(transcript)|ensemblbacteria:DVU_1983(gene)|entrezgene/locuslink:2793789(identity) interpro:IPR041920|interpro:IPR008807(ROSMUCR transcriptional regulator)|refseq:YP_012291.1|refseq:WP_010940339.1|ensemblbacteria:AAS97551(transcript)|ensemblbacteria:DVU_3080(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|entrezgene/locuslink:2796431(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:MQlm0AmaAwRW7xwL0Ti+UcTVSlk882 rogid:xqlMUa5g6lBqwx/oreq4JQbVY9U882 intact-crc:590D1CD0D7AA1605|rigid:9HAW50U8XVOnlAyEOcoaSgEmdu8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR8 uniprotkb:Q72F88 intact:EBI-10068099|ensemblbacteria:AAS96400 intact:EBI-10088412|ensemblbacteria:AAS94809 psi-mi:q72ar8_desvh(display_long)|uniprotkb:DVU_1924(locus name)|uniprotkb:hypC(gene name)|psi-mi:hypC(display_short) psi-mi:q72f88_desvh(display_long)|uniprotkb:DVU_0326(locus name)|uniprotkb:hypE(gene name)|psi-mi:hypE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088409 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001109("Hydrogenase expression/formation protein (HUPF/HYPC)")|refseq:YP_011141.1|refseq:WP_010939210.1|ensemblbacteria:AAS96400(transcript)|ensemblbacteria:DVU_1924(gene)|entrezgene/locuslink:2793340(identity) interpro:IPR010918(AIR synthase related protein, C-terminal)|interpro:IPR011854(Hydrogenase expression/formation protein HypE)|interpro:IPR016188(PurM, N-terminal-like)|rcsb pdb:2Z1T|rcsb pdb:2Z1U|refseq:YP_009550.1|refseq:WP_010937633.1|ensemblbacteria:AAS94809(transcript)|ensemblbacteria:DVU_0326(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036676|interpro:IPR036921|entrezgene/locuslink:2794328(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:jQ67NXN/qOVP9dkMPrWZC15RQx8882 rogid:p980NC3Iaue+21RLGV2vj+8YKAM882 intact-crc:F8FF95A187595E06|rigid:49p+lRKyomo7BTnyGS8lwdOJHP0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR8 uniprotkb:Q729Q8 intact:EBI-10068099|ensemblbacteria:AAS96400 intact:EBI-10067332|ensemblbacteria:AAS96764 psi-mi:q72ar8_desvh(display_long)|uniprotkb:DVU_1924(locus name)|uniprotkb:hypC(gene name)|psi-mi:hypC(display_short) psi-mi:q729q8_desvh(display_long)|uniprotkb:DVU_2291(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088409 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001109("Hydrogenase expression/formation protein (HUPF/HYPC)")|refseq:YP_011141.1|refseq:WP_010939210.1|ensemblbacteria:AAS96400(transcript)|ensemblbacteria:DVU_1924(gene)|entrezgene/locuslink:2793340(identity) interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|refseq:WP_010939566.1|interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR029014|refseq:YP_011504.1|ensemblbacteria:AAS96764(transcript)|ensemblbacteria:DVU_2291(gene)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2795445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:jQ67NXN/qOVP9dkMPrWZC15RQx8882 rogid:Yt5P32YlY9IMEma6vpaTTK4+uUc882 intact-crc:F8FF95A187595E06|rigid:49p+lRKyomo7BTnyGS8lwdOJHP0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR8 uniprotkb:Q72EY8 intact:EBI-10068099|ensemblbacteria:AAS96400 intact:EBI-10071548|ensemblbacteria:AAS94913 psi-mi:q72ar8_desvh(display_long)|uniprotkb:DVU_1924(locus name)|uniprotkb:hypC(gene name)|psi-mi:hypC(display_short) psi-mi:q72ey8_desvh(display_long)|uniprotkb:DVU_0430(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088409 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001109("Hydrogenase expression/formation protein (HUPF/HYPC)")|refseq:YP_011141.1|refseq:WP_010939210.1|ensemblbacteria:AAS96400(transcript)|ensemblbacteria:DVU_1924(gene)|entrezgene/locuslink:2793340(identity) interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|interpro:IPR029014|refseq:YP_009654.1|refseq:WP_010937737.1|ensemblbacteria:AAS94913(transcript)|ensemblbacteria:DVU_0430(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2794673(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:jQ67NXN/qOVP9dkMPrWZC15RQx8882 rogid:eyLxgOA8tI+qucvmVtOAAJlSJwo882 intact-crc:F8FF95A187595E06|rigid:49p+lRKyomo7BTnyGS8lwdOJHP0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR8 uniprotkb:Q729Q9 intact:EBI-10068099|ensemblbacteria:AAS96400 intact:EBI-10067338|ensemblbacteria:AAS96763 psi-mi:q72ar8_desvh(display_long)|uniprotkb:DVU_1924(locus name)|uniprotkb:hypC(gene name)|psi-mi:hypC(display_short) psi-mi:q729q9_desvh(display_long)|uniprotkb:DVU_2290(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088409 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001109("Hydrogenase expression/formation protein (HUPF/HYPC)")|refseq:YP_011141.1|refseq:WP_010939210.1|ensemblbacteria:AAS96400(transcript)|ensemblbacteria:DVU_1924(gene)|entrezgene/locuslink:2793340(identity) interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|ensemblbacteria:AAS96763(transcript)|ensemblbacteria:DVU_2290(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|interpro:IPR037232|entrezgene/locuslink:2795444(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.15" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:jQ67NXN/qOVP9dkMPrWZC15RQx8882 rogid:vId31Wmn6in1ErXb+Zeb8SIpIjQ882 intact-crc:F8FF95A187595E06|rigid:49p+lRKyomo7BTnyGS8lwdOJHP0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AT3 uniprotkb:Q729F0 intact:EBI-10068534|ensemblbacteria:AAS96383 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q72at3_desvh(display_long)|uniprotkb:DVU_1907(locus name)|uniprotkb:ugd(gene name)|psi-mi:ugd(display_short) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088438 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028357|refseq:YP_011124.1|refseq:WP_010939193.1|ensemblbacteria:AAS96383(transcript)|ensemblbacteria:DVU_1907(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0003979"(UDP-glucose 6-dehydrogenase activity)|go:"GO:0006065"(UDP-glucuronate biosynthetic process)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291|entrezgene/locuslink:2793680(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.05" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:DlaZgne2xG/LcOH7et/EfWEYUd0882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:3A4949E201840BF2|rigid:b67vgiRKIrXMQf5vKt/RVQcyPH4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AT3 uniprotkb:Q72A89 intact:EBI-10068534|ensemblbacteria:AAS96383 intact:EBI-10088372|ensemblbacteria:AAS96581 psi-mi:q72at3_desvh(display_long)|uniprotkb:DVU_1907(locus name)|uniprotkb:ugd(gene name)|psi-mi:ugd(display_short) psi-mi:q72a89_desvh(display_long)|uniprotkb:DVU_2108(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088438 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028357|refseq:YP_011124.1|refseq:WP_010939193.1|ensemblbacteria:AAS96383(transcript)|ensemblbacteria:DVU_1907(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0003979"(UDP-glucose 6-dehydrogenase activity)|go:"GO:0006065"(UDP-glucuronate biosynthetic process)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291|entrezgene/locuslink:2793680(identity) interpro:IPR033913|interpro:IPR003731(Dinitrogenase iron-molybdenum cofactor biosynthesis)|refseq:YP_011321.1|refseq:WP_010939385.1|ensemblbacteria:AAS96581(transcript)|ensemblbacteria:DVU_2108(gene)|go:"GO:0009399"(nitrogen fixation)|interpro:IPR036105|entrezgene/locuslink:2793380(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:DlaZgne2xG/LcOH7et/EfWEYUd0882 rogid:+uf1QymSwGF2gCbSBQ24eZ0yS1M882 intact-crc:3A4949E201840BF2|rigid:b67vgiRKIrXMQf5vKt/RVQcyPH4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P61666 uniprotkb:Q72AL9 intact:EBI-10064898|ensemblbacteria:AAS96126 intact:EBI-10088396|ensemblbacteria:AAS96449 psi-mi:muts_desvh(display_long)|uniprotkb:DVU_1649(locus name)|uniprotkb:mutS(gene name)|psi-mi:mutS(display_short) psi-mi:q72al9_desvh(display_long)|uniprotkb:DVU_1973(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088393 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017261(DNA mismatch repair protein Msh6)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR005748(DNA mismatch repair protein MutS, type 1)|interpro:IPR007695(DNA mismatch repair protein MutS-like, N-terminal)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR007860(DNA mismatch repair protein MutS, connector)|interpro:IPR007861(DNA mismatch repair protein MutS, clamp)|interpro:IPR016151(DNA mismatch repair protein MutS, N-terminal)|interpro:IPR027417|refseq:YP_010867.1|refseq:WP_010938938.1|ensemblbacteria:AAS96126(transcript)|ensemblbacteria:DVU_1649(gene)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0030983"(mismatched DNA binding)|interpro:IPR036187|interpro:IPR036678|entrezgene/locuslink:2795920(identity) interpro:IPR001763(Rhodanese-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_011190.1|refseq:WP_010939259.1|ensemblbacteria:AAS96449(transcript)|ensemblbacteria:DVU_1973(gene)|interpro:IPR036873|entrezgene/locuslink:2795987(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.14" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:ZGZFw9d5v8YAmxpHTqSbp7xj76g882 rogid:asQ/jRJsJrNflmRiMkK/sEY9zFw882 intact-crc:8D3C3C7EF22FAC15|rigid:Xa3dxEnXgkTGAYKoE3qrrrM94KE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q729X2 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10067430|ensemblbacteria:AAS96698 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088468 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 intact-crc:9A62DD9FEFD3A614|rigid:j0arDAsYeDrnsFEtPDixyEwc28c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q72CF4 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088468 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:9A62DD9FEFD3A614|rigid:j0arDAsYeDrnsFEtPDixyEwc28c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q727C7 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088468 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:9A62DD9FEFD3A614|rigid:j0arDAsYeDrnsFEtPDixyEwc28c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q726Q1 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10069830|ensemblbacteria:AAS97526 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:q726q1_desvh(display_long)|uniprotkb:DVU_3055(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088468 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR003029(S1, RNA binding)|interpro:IPR004659(Ribonuclease E and G)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019307|interpro:IPR022967|refseq:WP_010940314.1|refseq:YP_012266.1|ensemblbacteria:AAS97526(transcript)|ensemblbacteria:DVU_3055(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004540"(ribonuclease activity)|go:"GO:0006396"(RNA processing)|entrezgene/locuslink:2796081(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.10" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:0DukenNB/4I6W/6xr1RMTApK4ro882 intact-crc:9A62DD9FEFD3A614|rigid:j0arDAsYeDrnsFEtPDixyEwc28c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU9 uniprotkb:Q72B17 intact:EBI-10068317|ensemblbacteria:AAS96367 intact:EBI-10068561|ensemblbacteria:AAS96299 psi-mi:q72au9_desvh(display_long)|uniprotkb:DVU_1891(locus name) psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088518 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR018641|interpro:IPR029044|refseq:YP_011108.1|ensemblbacteria:AAS96367(transcript)|ensemblbacteria:DVU_1891(gene)|entrezgene/locuslink:2794702(identity) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2793483(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:XPZ5Aw4EDJt0frQm7v3aeOFQ56E882 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 intact-crc:9AB61933279BDC1D|rigid:7h1L2CGncjR66/BkVpDRMxFVp+o false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU9 uniprotkb:Q72B18 intact:EBI-10068317|ensemblbacteria:AAS96367 intact:EBI-10068567|ensemblbacteria:AAS96298 psi-mi:q72au9_desvh(display_long)|uniprotkb:DVU_1891(locus name) psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088518 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR018641|interpro:IPR029044|refseq:YP_011108.1|ensemblbacteria:AAS96367(transcript)|ensemblbacteria:DVU_1891(gene)|entrezgene/locuslink:2794702(identity) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485|entrezgene/locuslink:2793482(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.16" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:XPZ5Aw4EDJt0frQm7v3aeOFQ56E882 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 intact-crc:9AB61933279BDC1D|rigid:7h1L2CGncjR66/BkVpDRMxFVp+o false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AW7 uniprotkb:Q72C29 intact:EBI-10068407|ensemblbacteria:AAS96349 intact:EBI-10065571|ensemblbacteria:AAS95933 psi-mi:q72aw7_desvh(display_long)|uniprotkb:DVU_1873(locus name)|uniprotkb:ppiB-2(gene name)|psi-mi:ppiB-2(display_short) psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088535 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_011792177.1|interpro:IPR002130(Peptidyl-prolyl cis-trans isomerase, cyclophilin-type)|interpro:IPR020892|interpro:IPR029000|interpro:IPR024936|ensemblbacteria:AAS96349(transcript)|ensemblbacteria:DVU_1873(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0006457"(protein folding)|interpro:IPR044665|entrezgene/locuslink:2794317(identity) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.15" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:HH/qD05hqrEqtKpMr6tovuyIeY0882 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 intact-crc:7E64FB397CE0BC64|rigid:zmT520M6hHAy3cfndUCx7IIgBIE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AW7 uniprotkb:Q726E7 intact:EBI-10068407|ensemblbacteria:AAS96349 intact:EBI-10065191|ensemblbacteria:AAS97676 psi-mi:q72aw7_desvh(display_long)|uniprotkb:DVU_1873(locus name)|uniprotkb:ppiB-2(gene name)|psi-mi:ppiB-2(display_short) psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088535 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_011792177.1|interpro:IPR002130(Peptidyl-prolyl cis-trans isomerase, cyclophilin-type)|interpro:IPR020892|interpro:IPR029000|interpro:IPR024936|ensemblbacteria:AAS96349(transcript)|ensemblbacteria:DVU_1873(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0006457"(protein folding)|interpro:IPR044665|entrezgene/locuslink:2794317(identity) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:HH/qD05hqrEqtKpMr6tovuyIeY0882 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 intact-crc:7E64FB397CE0BC64|rigid:zmT520M6hHAy3cfndUCx7IIgBIE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AW7 uniprotkb:Q72EV8 intact:EBI-10068407|ensemblbacteria:AAS96349 intact:EBI-10071329|ensemblbacteria:AAS94943 psi-mi:q72aw7_desvh(display_long)|uniprotkb:DVU_1873(locus name)|uniprotkb:ppiB-2(gene name)|psi-mi:ppiB-2(display_short) psi-mi:q72ev8_desvh(display_long)|uniprotkb:DVU_0460(locus name)|uniprotkb:aroA'(gene name)|psi-mi:aroA'(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088535 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_011792177.1|interpro:IPR002130(Peptidyl-prolyl cis-trans isomerase, cyclophilin-type)|interpro:IPR020892|interpro:IPR029000|interpro:IPR024936|ensemblbacteria:AAS96349(transcript)|ensemblbacteria:DVU_1873(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0006457"(protein folding)|interpro:IPR044665|entrezgene/locuslink:2794317(identity) interpro:IPR041720|interpro:IPR002915(Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR010210(Predicted phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009684.1|refseq:WP_010937767.1|ensemblbacteria:AAS94943(transcript)|ensemblbacteria:DVU_0460(gene)|go:"GO:0004332"(fructose-bisphosphate aldolase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016744"(transketolase or transaldolase activity)|go:"GO:0016836"(hydro-lyase activity)|entrezgene/locuslink:2794473(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.25" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:HH/qD05hqrEqtKpMr6tovuyIeY0882 rogid:jMWmDYStvbIlwq4hmTwf4dNv1ps882 intact-crc:7E64FB397CE0BC64|rigid:zmT520M6hHAy3cfndUCx7IIgBIE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B19 uniprotkb:Q72E95 intact:EBI-10068658|ensemblbacteria:AAS96297 intact:EBI-10088623|ensemblbacteria:AAS95164 psi-mi:q72b19_desvh(display_long)|uniprotkb:DVU_1820(locus name)|uniprotkb:yajC(gene name)|psi-mi:yajC(display_short) psi-mi:q72e95_desvh(display_long)|uniprotkb:DVU_0683(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088626 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003849(YajC)|refseq:YP_011038.1|refseq:WP_010939107.1|ensemblbacteria:AAS96297(transcript)|ensemblbacteria:DVU_1820(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793481(identity) interpro:IPR001107(Band 7 protein)|interpro:IPR001972(Stomatin)|interpro:IPR010200(HflC)|refseq:YP_009905.1|refseq:WP_010937986.1|ensemblbacteria:AAS95164(transcript)|ensemblbacteria:DVU_0683(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0052547"(regulation of peptidase activity)|interpro:IPR036013|entrezgene/locuslink:2795333(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:VSWpSoyoEFR/Ne1zR7xpZKpPyB8882 rogid:lrdzQrn65o4rGvV20jOhIruczSM882 intact-crc:7116DB7CDC604E12|rigid:DR17jWBkfKUYnQV0kyQqj4ME0UA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B19 uniprotkb:Q726M2 intact:EBI-10068658|ensemblbacteria:AAS96297 intact:EBI-10088139|ensemblbacteria:AAS97555 psi-mi:q72b19_desvh(display_long)|uniprotkb:DVU_1820(locus name)|uniprotkb:yajC(gene name)|psi-mi:yajC(display_short) psi-mi:q726m2_desvh(display_long)|uniprotkb:DVU_3084(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088626 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003849(YajC)|refseq:YP_011038.1|refseq:WP_010939107.1|ensemblbacteria:AAS96297(transcript)|ensemblbacteria:DVU_1820(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793481(identity) interpro:IPR041920|interpro:IPR008807(ROSMUCR transcriptional regulator)|refseq:YP_012295.1|refseq:WP_010940343.1|ensemblbacteria:AAS97555(transcript)|ensemblbacteria:DVU_3084(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|entrezgene/locuslink:2796435(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:VSWpSoyoEFR/Ne1zR7xpZKpPyB8882 rogid:isunD1s4g0x4W1Nvt8UUt+9JWLk882 intact-crc:7116DB7CDC604E12|rigid:DR17jWBkfKUYnQV0kyQqj4ME0UA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B19 uniprotkb:Q72E94 intact:EBI-10068658|ensemblbacteria:AAS96297 intact:EBI-10088633|ensemblbacteria:AAS95165 psi-mi:q72b19_desvh(display_long)|uniprotkb:DVU_1820(locus name)|uniprotkb:yajC(gene name)|psi-mi:yajC(display_short) psi-mi:q72e94_desvh(display_long)|uniprotkb:DVU_0684(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088626 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003849(YajC)|refseq:YP_011038.1|refseq:WP_010939107.1|ensemblbacteria:AAS96297(transcript)|ensemblbacteria:DVU_1820(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793481(identity) interpro:IPR001107(Band 7 protein)|interpro:IPR010201(HflK)|refseq:YP_009906.1|refseq:WP_010937987.1|ensemblbacteria:AAS95165(transcript)|ensemblbacteria:DVU_0684(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036013|entrezgene/locuslink:2795334(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:VSWpSoyoEFR/Ne1zR7xpZKpPyB8882 rogid:h+2fQeuNnAx45zc4zLbL0FB4V94882 intact-crc:7116DB7CDC604E12|rigid:DR17jWBkfKUYnQV0kyQqj4ME0UA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B19 uniprotkb:Q72CK5 intact:EBI-10068658|ensemblbacteria:AAS96297 intact:EBI-10088629|ensemblbacteria:AAS95756 psi-mi:q72b19_desvh(display_long)|uniprotkb:DVU_1820(locus name)|uniprotkb:yajC(gene name)|psi-mi:yajC(display_short) psi-mi:q72ck5_desvh(display_long)|uniprotkb:DVU_1278(locus name)|uniprotkb:ftsH(gene name)|psi-mi:ftsH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088626 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003849(YajC)|refseq:YP_011038.1|refseq:WP_010939107.1|ensemblbacteria:AAS96297(transcript)|ensemblbacteria:DVU_1820(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793481(identity) interpro:IPR000642(Peptidase M41)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005936(Peptidase M41, FtsH)|interpro:IPR011546(Peptidase M41, FtsH extracellular)|interpro:IPR027417|refseq:YP_010497.1|refseq:WP_010938574.1|ensemblbacteria:AAS95756(transcript)|ensemblbacteria:DVU_1278(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016021"(integral component of membrane)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051301"(cell division)|interpro:IPR037219|interpro:IPR041569|entrezgene/locuslink:2794269(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.05" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:VSWpSoyoEFR/Ne1zR7xpZKpPyB8882 rogid:beGen3SGtpM7zcb0X19hABnytk8882 intact-crc:7116DB7CDC604E12|rigid:DR17jWBkfKUYnQV0kyQqj4ME0UA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B16 uniprotkb:P45573 intact:EBI-10068314|ensemblbacteria:AAS96300 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088610 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793484(identity) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072|entrezgene/locuslink:2796326(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.19" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:1C2FE12BE895FCE4|rigid:VltYNJDBQYqaVr/aHkskTp3TbQo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DI7 uniprotkb:Q72AZ9 intact:EBI-10088597|ensemblbacteria:AAS95422 intact:EBI-10070789|ensemblbacteria:AAS96317 psi-mi:q72di7_desvh(display_long)|uniprotkb:fur(gene name)|psi-mi:fur(display_short)|uniprotkb:DVU_0942(locus name) psi-mi:f16pa_desvh(display_long)|uniprotkb:D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1(gene name synonym)|uniprotkb:DVU_1841(locus name)|uniprotkb:fbp(gene name)|psi-mi:fbp(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088594 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002481(Ferric-uptake regulator)|refseq:YP_010163.1|refseq:WP_010938241.1|ensemblbacteria:AAS95422(transcript)|ensemblbacteria:DVU_0942(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0046872"(metal ion binding)|interpro:IPR036388|interpro:IPR036390|interpro:IPR043135|entrezgene/locuslink:2794616(identity) interpro:IPR033391|interpro:IPR000146(Inositol phosphatase/fructose-1,6-bisphosphatase)|interpro:IPR028343|refseq:YP_011058.1|refseq:WP_010939127.1|ensemblbacteria:AAS96317(transcript)|ensemblbacteria:DVU_1841(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|interpro:IPR044015|entrezgene/locuslink:2796475(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.03" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:6laS1XP05bwjTJLJ9LXi6kqiDDU882 rogid:M4TLbaLSH8QEk2PR+1+08HJmQoY882 intact-crc:7A971AC9C1CD41FB|rigid:BJCyQeuV96qO9j4n3HW+fDQ+iWo false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AX6 uniprotkb:Q725K7 intact:EBI-10064902|ensemblbacteria:AAS96340 intact:EBI-10088573|ensemblbacteria:AAS97657 psi-mi:q72ax6_desvh(display_long)|uniprotkb:DVU_1864(locus name) psi-mi:q725k7_desvh(display_long)|uniprotkb:DVU_3187(locus name)|uniprotkb:hup-4(gene name)|psi-mi:hup-4(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088577 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_011081.1|refseq:WP_010939150.1|ensemblbacteria:AAS96340(transcript)|ensemblbacteria:DVU_1864(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793646(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012397.1|refseq:WP_010940445.1|ensemblbacteria:AAS97657(transcript)|ensemblbacteria:DVU_3187(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793837(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:n21OwmwqHiyRGMYLOFMYc5upF1E882 rogid:GFMaFAKOcY+Lkh0z2aFEIx8HGpc882 intact-crc:56E639EEDE6A4D04|rigid:z4w91WoPMwxt67C5qf/oqLq6Z9s false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AX6 uniprotkb:Q72B01 intact:EBI-10064902|ensemblbacteria:AAS96340 intact:EBI-10068511|ensemblbacteria:AAS96315 psi-mi:q72ax6_desvh(display_long)|uniprotkb:DVU_1864(locus name) psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088577 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_011081.1|refseq:WP_010939150.1|ensemblbacteria:AAS96340(transcript)|ensemblbacteria:DVU_1864(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793646(identity) interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249|entrezgene/locuslink:2796473(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:n21OwmwqHiyRGMYLOFMYc5upF1E882 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 intact-crc:56E639EEDE6A4D04|rigid:z4w91WoPMwxt67C5qf/oqLq6Z9s false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725K7 uniprotkb:Q72BK4 intact:EBI-10088573|ensemblbacteria:AAS97657 intact:EBI-10088712|ensemblbacteria:AAS96109 psi-mi:q725k7_desvh(display_long)|uniprotkb:DVU_3187(locus name)|uniprotkb:hup-4(gene name)|psi-mi:hup-4(display_short) psi-mi:y1631_desvh(display_long)|uniprotkb:DVU_1631(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088709 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012397.1|refseq:WP_010940445.1|ensemblbacteria:AAS97657(transcript)|ensemblbacteria:DVU_3187(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793837(identity) interpro:IPR005337(P-loop ATPase protein)|interpro:IPR027417|refseq:YP_010850.1|refseq:WP_010938922.1|ensemblbacteria:AAS96109(transcript)|ensemblbacteria:DVU_1631(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005525"(GTP binding)|entrezgene/locuslink:2796095(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.03" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:GFMaFAKOcY+Lkh0z2aFEIx8HGpc882 rogid:sJsbF3NzMZKBmDaKYhNH1kjrAEc882 intact-crc:1ABCCEF79BFA229A|rigid:LNYl9+wZsqYA+p5/puKHnxk9JAE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B43 uniprotkb:Q72F19 intact:EBI-10068679|ensemblbacteria:AAS96272 intact:EBI-10068421|ensemblbacteria:AAS94879 psi-mi:q72b43_desvh(display_long)|uniprotkb:DVU_1795(locus name)|uniprotkb:hup-3(gene name)|psi-mi:hup-3(display_short) psi-mi:q72f19_desvh(display_long)|uniprotkb:DVU_0396(locus name)|uniprotkb:hup-1(gene name)|psi-mi:hup-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088658 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_011013.1|refseq:WP_010939083.1|ensemblbacteria:AAS96272(transcript)|ensemblbacteria:DVU_1795(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793321(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_009620.1|interpro:IPR005684(Integration host factor, alpha subunit)|refseq:WP_010937703.1|ensemblbacteria:AAS94879(transcript)|ensemblbacteria:DVU_0396(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006310"(DNA recombination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006417"(regulation of translation)|entrezgene/locuslink:2796538(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.15" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:5cQx/aWrXbSgzWsjOrE3XICa3P0882 rogid:mNwdKUGDFbiz+xsocUEaTpv9PKs882 intact-crc:35348201653865D1|rigid:JztJqeAm0CpR9ZEIcdyL1j+YRow false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B43 uniprotkb:Q725K7 intact:EBI-10068679|ensemblbacteria:AAS96272 intact:EBI-10088573|ensemblbacteria:AAS97657 psi-mi:q72b43_desvh(display_long)|uniprotkb:DVU_1795(locus name)|uniprotkb:hup-3(gene name)|psi-mi:hup-3(display_short) psi-mi:q725k7_desvh(display_long)|uniprotkb:DVU_3187(locus name)|uniprotkb:hup-4(gene name)|psi-mi:hup-4(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088658 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_011013.1|refseq:WP_010939083.1|ensemblbacteria:AAS96272(transcript)|ensemblbacteria:DVU_1795(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793321(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012397.1|refseq:WP_010940445.1|ensemblbacteria:AAS97657(transcript)|ensemblbacteria:DVU_3187(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793837(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:5cQx/aWrXbSgzWsjOrE3XICa3P0882 rogid:GFMaFAKOcY+Lkh0z2aFEIx8HGpc882 intact-crc:35348201653865D1|rigid:JztJqeAm0CpR9ZEIcdyL1j+YRow false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BL6 uniprotkb:Q72E27 intact:EBI-10088728|ensemblbacteria:AAS96097 intact:EBI-10070734|ensemblbacteria:AAS95232 psi-mi:gpmi_desvh(display_long)|uniprotkb:gpmA(gene name synonym)|uniprotkb:DVU_1619(locus name)|uniprotkb:gpmI(gene name)|psi-mi:gpmI(display_short) psi-mi:q72e27_desvh(display_long)|uniprotkb:DVU_0752(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088732 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005995(Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent)|interpro:IPR006124(Metalloenzyme)|interpro:IPR011258(BPG-independent PGAM, N-terminal)|interpro:IPR017850(Alkaline-phosphatase-like, core domain)|refseq:YP_010838.1|refseq:WP_010938910.1|ensemblbacteria:AAS96097(transcript)|ensemblbacteria:DVU_1619(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006007"(glucose catabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0030145"(manganese ion binding)|go:"GO:0046537"(2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity)|interpro:IPR036646|entrezgene/locuslink:2795880(identity) interpro:IPR001638(Bacterial extracellular solute-binding protein, family 3)|refseq:YP_009973.1|refseq:WP_010938053.1|ensemblbacteria:AAS95232(transcript)|ensemblbacteria:DVU_0752(gene)|entrezgene/locuslink:2794970(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:2KShhTVTjdrIKSDvZZClxKBgYaI882 rogid:mjaNEmAJTS6Wm19t0RvVE71Y4IY882 intact-crc:1DC36010FD49C5F8|rigid:46q2k6PDwmFx2Md+gM9jCzGqePQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BL6 uniprotkb:Q72CP5 intact:EBI-10088728|ensemblbacteria:AAS96097 intact:EBI-10088725|ensemblbacteria:AAS95716 psi-mi:gpmi_desvh(display_long)|uniprotkb:gpmA(gene name synonym)|uniprotkb:DVU_1619(locus name)|uniprotkb:gpmI(gene name)|psi-mi:gpmI(display_short) psi-mi:q72cp5_desvh(display_long)|uniprotkb:DVU_1238(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088732 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005995(Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent)|interpro:IPR006124(Metalloenzyme)|interpro:IPR011258(BPG-independent PGAM, N-terminal)|interpro:IPR017850(Alkaline-phosphatase-like, core domain)|refseq:YP_010838.1|refseq:WP_010938910.1|ensemblbacteria:AAS96097(transcript)|ensemblbacteria:DVU_1619(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006007"(glucose catabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0030145"(manganese ion binding)|go:"GO:0046537"(2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity)|interpro:IPR036646|entrezgene/locuslink:2795880(identity) interpro:IPR001320(Ionotropic glutamate receptor)|interpro:IPR001638(Bacterial extracellular solute-binding protein, family 3)|refseq:YP_010457.1|refseq:WP_010938534.1|ensemblbacteria:AAS95716(transcript)|ensemblbacteria:DVU_1238(gene)|go:"GO:0015276"(ligand-gated ion channel activity)|go:"GO:0016020"(membrane)|entrezgene/locuslink:2794415(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.21" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:2KShhTVTjdrIKSDvZZClxKBgYaI882 rogid:45X7zMkBy10o1CmZwSFfWz6GXSM882 intact-crc:1DC36010FD49C5F8|rigid:46q2k6PDwmFx2Md+gM9jCzGqePQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BD3 uniprotkb:Q726M6 intact:EBI-10088678|ensemblbacteria:AAS96180 intact:EBI-10088366|ensemblbacteria:AAS97551 psi-mi:q72bd3_desvh(display_long)|uniprotkb:DVU_1703(locus name) psi-mi:q726m6_desvh(display_long)|uniprotkb:DVU_3080(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088675 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004473(Restriction endonuclease, type I, EcoRI, R subunit)|interpro:IPR007409(Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N terminus)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|refseq:YP_010921.1|refseq:WP_010938992.1|ensemblbacteria:AAS96180(transcript)|ensemblbacteria:DVU_1703(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0009035"(type I site-specific deoxyribonuclease activity)|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR040980|entrezgene/locuslink:2795785(identity) interpro:IPR041920|interpro:IPR008807(ROSMUCR transcriptional regulator)|refseq:YP_012291.1|refseq:WP_010940339.1|ensemblbacteria:AAS97551(transcript)|ensemblbacteria:DVU_3080(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|entrezgene/locuslink:2796431(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:YPlACy2jlN8UnBjE69M7lRB8gtM882 rogid:xqlMUa5g6lBqwx/oreq4JQbVY9U882 intact-crc:F337B41249ECA107|rigid:3URJdvR4ciZle49YmoagBp1u9IA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BD3 uniprotkb:Q728G0 intact:EBI-10088678|ensemblbacteria:AAS96180 intact:EBI-10066697|ensemblbacteria:AAS97115 psi-mi:q72bd3_desvh(display_long)|uniprotkb:DVU_1703(locus name) psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088675 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004473(Restriction endonuclease, type I, EcoRI, R subunit)|interpro:IPR007409(Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N terminus)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|refseq:YP_010921.1|refseq:WP_010938992.1|ensemblbacteria:AAS96180(transcript)|ensemblbacteria:DVU_1703(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0009035"(type I site-specific deoxyribonuclease activity)|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR040980|entrezgene/locuslink:2795785(identity) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:YPlACy2jlN8UnBjE69M7lRB8gtM882 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 intact-crc:F337B41249ECA107|rigid:3URJdvR4ciZle49YmoagBp1u9IA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726M6 uniprotkb:Q72BP6 intact:EBI-10088366|ensemblbacteria:AAS97551 intact:EBI-10088790|ensemblbacteria:AAS96066 psi-mi:q726m6_desvh(display_long)|uniprotkb:DVU_3080(locus name) psi-mi:q72bp6_desvh(display_long)|uniprotkb:DVU_1588(locus name)|uniprotkb:hpt(gene name)|psi-mi:hpt(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088787 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041920|interpro:IPR008807(ROSMUCR transcriptional regulator)|refseq:YP_012291.1|refseq:WP_010940339.1|ensemblbacteria:AAS97551(transcript)|ensemblbacteria:DVU_3080(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|entrezgene/locuslink:2796431(identity) interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR005904(Hypoxanthine phosphoribosyl transferase)|interpro:IPR029057|refseq:YP_010807.1|refseq:WP_010938879.1|ensemblbacteria:AAS96066(transcript)|ensemblbacteria:DVU_1588(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0004422"(hypoxanthine phosphoribosyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006166"(purine ribonucleoside salvage)|go:"GO:0032264"(IMP salvage)|go:"GO:0046872"(metal ion binding)|go:"GO:0052657"(guanine phosphoribosyltransferase activity)|entrezgene/locuslink:2796024(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.02" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:xqlMUa5g6lBqwx/oreq4JQbVY9U882 rogid:u6mGZZFzSOHmGurs4ycVOqK8VtE882 intact-crc:611B89154B7CFA8E|rigid:m0ulStRLDWjRRSyQwXP0ZntPK/o false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BM3 uniprotkb:Q72BM0 intact:EBI-10068066|ensemblbacteria:AAS96090 intact:EBI-10088749|ensemblbacteria:AAS96093 psi-mi:q72bm3_desvh(display_long)|uniprotkb:DVU_1612(locus name) psi-mi:q72bm0_desvh(display_long)|uniprotkb:Phenylacetyl-CoA ligase(gene name synonym)|uniprotkb:DVU_1615(locus name)|uniprotkb:paaK-2(gene name)|psi-mi:paaK-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088753 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002912(Amino acid-binding ACT)|refseq:YP_010831.1|refseq:WP_010938903.1|ensemblbacteria:AAS96090(transcript)|ensemblbacteria:DVU_1612(gene)|entrezgene/locuslink:2796065(identity) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011880(Phenylacetate-CoA ligase)|interpro:IPR028154|refseq:YP_010834.1|refseq:WP_010938906.1|ensemblbacteria:AAS96093(transcript)|ensemblbacteria:DVU_1615(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0010124"(phenylacetate catabolic process)|go:"GO:0047475"(phenylacetate-CoA ligase activity)|entrezgene/locuslink:2796068(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.03" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:cUPUKCp7Aoyi1bdGib7iFptt9S0882 rogid:ifHM1mbS9pA1CJ0bVxgdLGKe17o882 intact-crc:6A9357F4355B005E|rigid:4PzXlEMlM7FwCkSnnozkrW8/ldQ false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BP2 uniprotkb:Q72E03 intact:EBI-10068941|ensemblbacteria:AAS96070 intact:EBI-10070593|ensemblbacteria:AAS95256 psi-mi:q72bp2_desvh(display_long)|uniprotkb:DVU_1592(locus name) psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088770 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938883.1|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_010811.1|ensemblbacteria:AAS96070(transcript)|ensemblbacteria:DVU_1592(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016020"(membrane)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2796028(identity) interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:wGtDBExRx6uFrLl4cJzjt4X6DLU882 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 intact-crc:573C4A3C0536EA0B|rigid:eENoPP8H782FKz+LJeH/VJARVjY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BP2 uniprotkb:Q72AT6 intact:EBI-10068941|ensemblbacteria:AAS96070 intact:EBI-10088766|ensemblbacteria:AAS96380 psi-mi:q72bp2_desvh(display_long)|uniprotkb:DVU_1592(locus name) psi-mi:q72at6_desvh(display_long)|uniprotkb:DVU_1904(locus name)|uniprotkb:cheW-2(gene name)|psi-mi:cheW-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088770 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938883.1|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_010811.1|ensemblbacteria:AAS96070(transcript)|ensemblbacteria:DVU_1592(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016020"(membrane)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2796028(identity) interpro:IPR002545(CheW-like protein)|refseq:YP_011121.1|refseq:WP_010939190.1|ensemblbacteria:AAS96380(transcript)|ensemblbacteria:DVU_1904(gene)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|interpro:IPR036061|interpro:IPR039315|entrezgene/locuslink:2793677(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:wGtDBExRx6uFrLl4cJzjt4X6DLU882 rogid:bOt4fs13SqXdXOk0oid5M4OcU8o882 intact-crc:573C4A3C0536EA0B|rigid:eENoPP8H782FKz+LJeH/VJARVjY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BU7 uniprotkb:Q72DZ9 intact:EBI-10069050|ensemblbacteria:AAS96015 intact:EBI-10070604|ensemblbacteria:AAS95260 psi-mi:q72bu7_desvh(display_long)|uniprotkb:DVU_1537(locus name) psi-mi:q72dz9_desvh(display_long)|uniprotkb:DVU_0780(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088836 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005632("Outer membrane chaperone Skp (OmpH)")|interpro:IPR024930|refseq:YP_010756.1|refseq:WP_010938829.1|ensemblbacteria:AAS96015(transcript)|ensemblbacteria:DVU_1537(gene)|go:"GO:0051082"(unfolded protein binding)|entrezgene/locuslink:2793822(identity) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|interpro:IPR028987|refseq:YP_010001.1|ensemblbacteria:AAS95260(transcript)|ensemblbacteria:DVU_0780(gene)|go:"GO:0015078"(proton transmembrane transporter activity)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)")|entrezgene/locuslink:2794765(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Z69I+QHw7xB9zNaq2crNRD2DdMQ882 rogid:iawHw4iYKJBHw2AYajd2/PQMxLU882 intact-crc:5A30C34C27B56D03|rigid:UI8pn0KbIArYni/EF6a2hxxJqog false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BU7 uniprotkb:Q729F1 intact:EBI-10069050|ensemblbacteria:AAS96015 intact:EBI-10067171|ensemblbacteria:AAS96873 psi-mi:q72bu7_desvh(display_long)|uniprotkb:DVU_1537(locus name) psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088836 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005632("Outer membrane chaperone Skp (OmpH)")|interpro:IPR024930|refseq:YP_010756.1|refseq:WP_010938829.1|ensemblbacteria:AAS96015(transcript)|ensemblbacteria:DVU_1537(gene)|go:"GO:0051082"(unfolded protein binding)|entrezgene/locuslink:2793822(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794485(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.16" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Z69I+QHw7xB9zNaq2crNRD2DdMQ882 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 intact-crc:5A30C34C27B56D03|rigid:UI8pn0KbIArYni/EF6a2hxxJqog false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BU7 uniprotkb:Q72CE1 intact:EBI-10069050|ensemblbacteria:AAS96015 intact:EBI-10088833|ensemblbacteria:AAS95820 psi-mi:q72bu7_desvh(display_long)|uniprotkb:DVU_1537(locus name) psi-mi:q72ce1_desvh(display_long)|uniprotkb:DVU_1342(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088836 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005632("Outer membrane chaperone Skp (OmpH)")|interpro:IPR024930|refseq:YP_010756.1|refseq:WP_010938829.1|ensemblbacteria:AAS96015(transcript)|ensemblbacteria:DVU_1537(gene)|go:"GO:0051082"(unfolded protein binding)|entrezgene/locuslink:2793822(identity) interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:YP_010561.1|refseq:WP_010938637.1|ensemblbacteria:AAS95820(transcript)|ensemblbacteria:DVU_1342(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795141(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.21" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Z69I+QHw7xB9zNaq2crNRD2DdMQ882 rogid:fa0kJzZ2o286DZS0MjTtQJVUKjg882 intact-crc:5A30C34C27B56D03|rigid:UI8pn0KbIArYni/EF6a2hxxJqog false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BU7 uniprotkb:Q725Y7 intact:EBI-10069050|ensemblbacteria:AAS96015 intact:EBI-10066525|ensemblbacteria:AAS97756 psi-mi:q72bu7_desvh(display_long)|uniprotkb:DVU_1537(locus name) psi-mi:q725y7_desvh(display_long)|uniprotkb:DVU_3287(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088836 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005632("Outer membrane chaperone Skp (OmpH)")|interpro:IPR024930|refseq:YP_010756.1|refseq:WP_010938829.1|ensemblbacteria:AAS96015(transcript)|ensemblbacteria:DVU_1537(gene)|go:"GO:0051082"(unfolded protein binding)|entrezgene/locuslink:2793822(identity) interpro:IPR001173(Glycosyl transferase, family 2)|interpro:IPR029044|refseq:YP_012496.1|ensemblbacteria:AAS97756(transcript)|ensemblbacteria:DVU_3287(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2796011(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Z69I+QHw7xB9zNaq2crNRD2DdMQ882 rogid:hKVhTSe/o5xpsxoB9K3IKk4f/6Q882 intact-crc:5A30C34C27B56D03|rigid:UI8pn0KbIArYni/EF6a2hxxJqog false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DN5 uniprotkb:Q72BT5 intact:EBI-10067785|ensemblbacteria:AAS95374 intact:EBI-10088807|ensemblbacteria:AAS96027 psi-mi:aroc_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym)|uniprotkb:DVU_0894(locus name)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short) psi-mi:q72bt5_desvh(display_long)|uniprotkb:DVU_1549(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088804 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000453(Chorismate synthase)|interpro:IPR020541|refseq:YP_010115.1|refseq:WP_010938193.1|ensemblbacteria:AAS95374(transcript)|ensemblbacteria:DVU_0894(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR035904|entrezgene/locuslink:2794112(identity) interpro:IPR029063|refseq:YP_010768.1|refseq:WP_010938841.1|ensemblbacteria:AAS96027(transcript)|ensemblbacteria:DVU_1549(gene)|interpro:IPR041698|entrezgene/locuslink:2794865(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.12" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:iHGB7L1SbAIWU9CoIggdBpLYneU882 rogid:hbl5bdzj+gQKDRmmLlpkxUkQTQs882 intact-crc:6CBE5ABDCA2048C3|rigid:PYgXdA/zv4pl/nlhNDxetVMQKc8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C06 uniprotkb:Q72ET7 intact:EBI-10088868|ensemblbacteria:AAS95956 intact:EBI-10088864|ensemblbacteria:AAS94964 psi-mi:q72c06_desvh(display_long)|uniprotkb:DVU_1478(locus name) psi-mi:hldd_desvh(display_long)|uniprotkb:ADP-L-glycero-beta-D-manno-heptose-6-epimerase(gene name synonym)|uniprotkb:rfaD(gene name synonym)|uniprotkb:DVU_0481(locus name)|uniprotkb:hldD(gene name)|psi-mi:hldD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088861 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010697.1|refseq:WP_010938771.1|ensemblbacteria:AAS95956(transcript)|ensemblbacteria:DVU_1478(gene)|entrezgene/locuslink:2794936(identity) interpro:IPR001509(NAD-dependent epimerase/dehydratase)|interpro:IPR011912(ADP-L-glycero-D-manno-heptose-6-epimerase)|refseq:YP_009705.1|refseq:WP_010937788.1|ensemblbacteria:AAS94964(transcript)|ensemblbacteria:DVU_0481(gene)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0008712"(ADP-glyceromanno-heptose 6-epimerase activity)|go:"GO:0050661"(NADP binding)|go:"GO:0097171"(ADP-L-glycero-beta-D-manno-heptose biosynthetic process)|interpro:IPR036291|entrezgene/locuslink:2793626(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:pWxee6aUSL4I5AQ645wEgfBh5l0882 rogid:TdR8z2mnPoKJjDChsvz0tsJ/USw882 intact-crc:EBA53C765EBC8F95|rigid:rf3UY11EhHNwYVQQIYoxNN7p6Ic false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C06 uniprotkb:Q72AE2 intact:EBI-10088868|ensemblbacteria:AAS95956 intact:EBI-10067762|ensemblbacteria:AAS96528 psi-mi:q72c06_desvh(display_long)|uniprotkb:DVU_1478(locus name) psi-mi:q72ae2_desvh(display_long)|uniprotkb:metG(gene name)|psi-mi:metG(display_short)|uniprotkb:Methionyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2055(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088861 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010697.1|refseq:WP_010938771.1|ensemblbacteria:AAS95956(transcript)|ensemblbacteria:DVU_1478(gene)|entrezgene/locuslink:2794936(identity) interpro:IPR041872|interpro:IPR033911|interpro:IPR002547(tRNA-binding region)|interpro:IPR004495(Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR014758(Methionyl-tRNA synthetase, class Ia, N-terminal)|interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|interpro:IPR023457|refseq:WP_010939333.1|refseq:YP_011268.1|interpro:IPR032678|ensemblbacteria:AAS96528(transcript)|ensemblbacteria:DVU_2055(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004825"(methionine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006431"(methionyl-tRNA aminoacylation)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2796479(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:pWxee6aUSL4I5AQ645wEgfBh5l0882 rogid:h1kUEOwSshrNiJpCu6I400O/Ay0882 intact-crc:EBA53C765EBC8F95|rigid:rf3UY11EhHNwYVQQIYoxNN7p6Ic false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AT3 uniprotkb:Q72C59 intact:EBI-10068534|ensemblbacteria:AAS96383 intact:EBI-10069291|ensemblbacteria:AAS95903 psi-mi:q72at3_desvh(display_long)|uniprotkb:DVU_1907(locus name)|uniprotkb:ugd(gene name)|psi-mi:ugd(display_short) psi-mi:gcspa_desvh(display_long)|uniprotkb:Glycine cleavage system P-protein subunit 1(gene name synonym)|uniprotkb:Glycine decarboxylase subunit 1(gene name synonym)|uniprotkb:"Glycine dehydrogenase (aminomethyl-transferring) subunit 1"(gene name synonym)|uniprotkb:DVU_1425(locus name)|uniprotkb:gcvPA(gene name)|psi-mi:gcvPA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088983 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028357|refseq:YP_011124.1|refseq:WP_010939193.1|ensemblbacteria:AAS96383(transcript)|ensemblbacteria:DVU_1907(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0003979"(UDP-glucose 6-dehydrogenase activity)|go:"GO:0006065"(UDP-glucuronate biosynthetic process)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291|entrezgene/locuslink:2793680(identity) interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020581|interpro:IPR023010|refseq:YP_010644.1|refseq:WP_010938718.1|ensemblbacteria:AAS95903(transcript)|ensemblbacteria:DVU_1425(gene)|go:"GO:0004375"("glycine dehydrogenase (decarboxylating) activity")|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019464"(glycine decarboxylation via glycine cleavage system)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|entrezgene/locuslink:2794686(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.05" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:DlaZgne2xG/LcOH7et/EfWEYUd0882 rogid:NN8JwphJrH9Gj80Pv1v9BaEc82Y882 intact-crc:DF04102E293554D8|rigid:rsLC/JrHTp9DiVRB9CXeDQBfEjA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C52 uniprotkb:Q72A92 intact:EBI-10088955|ensemblbacteria:AAS95910 intact:EBI-10087612|ensemblbacteria:AAS96578 psi-mi:q72c52_desvh(display_long)|uniprotkb:DVU_1432(locus name) psi-mi:q72a92_desvh(display_long)|uniprotkb:DVU_2105(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088958 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938725.1|interpro:IPR023404|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR018768|interpro:IPR023862|refseq:YP_010651.1|ensemblbacteria:AAS95910(transcript)|ensemblbacteria:DVU_1432(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795158(identity) refseq:YP_011318.1|ensemblbacteria:AAS96578(transcript)|ensemblbacteria:DVU_2105(gene)|entrezgene/locuslink:2793377(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:sf9mapbP+S5hbdKVo6NorJ/KqqM882 rogid:JcyL2NcJci/cT5X6RwKQ1/Qy2rU882 intact-crc:83F52E758EE890F6|rigid:c/9ozI5EDcWf3xD6SIHf8gnpl6c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C52 uniprotkb:P61940 intact:EBI-10088955|ensemblbacteria:AAS95910 intact:EBI-10065097|ensemblbacteria:AAS95676 psi-mi:q72c52_desvh(display_long)|uniprotkb:DVU_1432(locus name) psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088958 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938725.1|interpro:IPR023404|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR018768|interpro:IPR023862|refseq:YP_010651.1|ensemblbacteria:AAS95910(transcript)|ensemblbacteria:DVU_1432(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795158(identity) interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467|entrezgene/locuslink:2796655(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:sf9mapbP+S5hbdKVo6NorJ/KqqM882 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 intact-crc:83F52E758EE890F6|rigid:c/9ozI5EDcWf3xD6SIHf8gnpl6c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C52 uniprotkb:Q72DT3 intact:EBI-10088955|ensemblbacteria:AAS95910 intact:EBI-10088961|ensemblbacteria:AAS95326 psi-mi:q72c52_desvh(display_long)|uniprotkb:DVU_1432(locus name) psi-mi:q72dt3_desvh(display_long)|uniprotkb:DVU_0846(locus name)|uniprotkb:aprB(gene name)|psi-mi:aprB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088958 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938725.1|interpro:IPR023404|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR018768|interpro:IPR023862|refseq:YP_010651.1|ensemblbacteria:AAS95910(transcript)|ensemblbacteria:DVU_1432(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795158(identity) interpro:IPR011802(Adenylylsulphate reductase, beta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR022738|refseq:YP_010067.1|refseq:WP_010938146.1|ensemblbacteria:AAS95326(transcript)|ensemblbacteria:DVU_0846(gene)|go:"GO:0009973"(adenylyl-sulfate reductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR038465|entrezgene/locuslink:2795197(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:sf9mapbP+S5hbdKVo6NorJ/KqqM882 rogid:L5kzaIOj1HHMASV9sth9pg0wmAY882 intact-crc:83F52E758EE890F6|rigid:c/9ozI5EDcWf3xD6SIHf8gnpl6c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q727C7 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088902 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.15" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:DF12D4723E330D32|rigid:KwMLzG+OZvVW88qRnpuXK6shDxI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q72D99 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10088905|ensemblbacteria:AAS95510 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q72d99_desvh(display_long)|uniprotkb:DVU_1030(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088902 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_010251.1|refseq:WP_010938329.1|ensemblbacteria:AAS95510(transcript)|ensemblbacteria:DVU_1030(gene)|go:"GO:0005737"(cytoplasm)|entrezgene/locuslink:2794527(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:p8fTyHL7x5SUBE3eKzKKJupCYac882 intact-crc:DF12D4723E330D32|rigid:KwMLzG+OZvVW88qRnpuXK6shDxI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q729E7 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088902 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794489(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.22" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:DF12D4723E330D32|rigid:KwMLzG+OZvVW88qRnpuXK6shDxI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q727C6 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065699|ensemblbacteria:AAS97401 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088902 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 intact-crc:DF12D4723E330D32|rigid:KwMLzG+OZvVW88qRnpuXK6shDxI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q72A93 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088902 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.14" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:DF12D4723E330D32|rigid:KwMLzG+OZvVW88qRnpuXK6shDxI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C09 uniprotkb:Q72CS5 intact:EBI-10069074|ensemblbacteria:AAS95953 intact:EBI-10088888|ensemblbacteria:AAS95686 psi-mi:q72c09_desvh(display_long)|uniprotkb:DVU_1475(locus name) psi-mi:plsx_desvh(display_long)|uniprotkb:Acyl-ACP phosphotransacylase(gene name synonym)|uniprotkb:Acyl-[acyl-carrier-protein]--phosphate acyltransferase(gene name synonym)|uniprotkb:Phosphate-acyl-ACP acyltransferase(gene name synonym)|uniprotkb:DVU_1208(locus name)|uniprotkb:plsX(gene name)|psi-mi:plsX(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088885 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR026022|interpro:IPR028366|refseq:YP_010694.1|refseq:WP_010938768.1|ensemblbacteria:AAS95953(transcript)|ensemblbacteria:DVU_1475(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078|entrezgene/locuslink:2794144(identity) interpro:IPR003664(Fatty acid synthesis plsX protein)|interpro:IPR012281(Phospholipid biosynthesis protein, PlsX type)|refseq:YP_010427.1|refseq:WP_010938504.1|ensemblbacteria:AAS95686(transcript)|ensemblbacteria:DVU_1208(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008654"(phospholipid biosynthetic process)|go:"GO:0043811"("phosphate:acyl-[acyl carrier protein] acyltransferase activity")|entrezgene/locuslink:2796685(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.12" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:rUX9vAQegVimSdnG0jHGTjgH0Kw882 rogid:z43JmwwmdMj6ZtThh5Yy6hcNYx8882 intact-crc:336C3BDF1F14B38A|rigid:ybUnDqeG/0zt5Ucc9pwWAlcnlK4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB3 uniprotkb:Q72BV2 intact:EBI-10089049|ensemblbacteria:AAS95848 intact:EBI-10089042|ensemblbacteria:AAS96010 psi-mi:q72cb3_desvh(display_long)|uniprotkb:DVU_1370(locus name) psi-mi:coad_desvh(display_long)|uniprotkb:Dephospho-CoA pyrophosphorylase(gene name synonym)|uniprotkb:Pantetheine-phosphate adenylyltransferase(gene name synonym)|uniprotkb:coaD(gene name)|psi-mi:coaD(display_short)|uniprotkb:DVU_1532(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089046 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010589.1|refseq:WP_010938665.1|ensemblbacteria:AAS95848(transcript)|ensemblbacteria:DVU_1370(gene)|entrezgene/locuslink:2793503(identity) interpro:IPR001980(Coenzyme A biosynthesis protein)|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_010751.1|refseq:WP_010938824.1|go:"GO:0004595"(pantetheine-phosphate adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0015937"(coenzyme A biosynthetic process)|ensemblbacteria:AAS96010(transcript)|ensemblbacteria:DVU_1532(gene)|entrezgene/locuslink:2793817(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:7iBEKOmEzchbgIkhL1lWMt16KtM882 rogid:FPot2uq/AsYxN4CClz73o2M1UP4882 intact-crc:CF2D4B6E4083B16E|rigid:2syeegERvhw+3pD2Ljexe65yH5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB3 uniprotkb:Q72WL5 intact:EBI-10089049|ensemblbacteria:AAS95848 intact:EBI-10088259|ensemblbacteria:AAS94381 psi-mi:q72cb3_desvh(display_long)|uniprotkb:DVU_1370(locus name) psi-mi:q72wl5_desvh(display_long)|uniprotkb:DVUA0074(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089046 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010589.1|refseq:WP_010938665.1|ensemblbacteria:AAS95848(transcript)|ensemblbacteria:DVU_1370(gene)|entrezgene/locuslink:2793503(identity) interpro:IPR000863(Sulphotransferase)|interpro:IPR027417|refseq:YP_009114.1|refseq:WP_011176652.1|ensemblbacteria:AAS94381(transcript)|ensemblbacteria:DVUA0074(gene)|go:"GO:0008146"(sulfotransferase activity)|entrezgene/locuslink:2781604(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:7iBEKOmEzchbgIkhL1lWMt16KtM882 rogid:Dshy1tNQyuHwJlQRha2z2lpU5Cc882 intact-crc:CF2D4B6E4083B16E|rigid:2syeegERvhw+3pD2Ljexe65yH5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB3 uniprotkb:Q726K3 intact:EBI-10089049|ensemblbacteria:AAS95848 intact:EBI-10068003|ensemblbacteria:AAS97575 psi-mi:q72cb3_desvh(display_long)|uniprotkb:DVU_1370(locus name) psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089046 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010589.1|refseq:WP_010938665.1|ensemblbacteria:AAS95848(transcript)|ensemblbacteria:DVU_1370(gene)|entrezgene/locuslink:2793503(identity) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737|entrezgene/locuslink:2795976(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:7iBEKOmEzchbgIkhL1lWMt16KtM882 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 intact-crc:CF2D4B6E4083B16E|rigid:2syeegERvhw+3pD2Ljexe65yH5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB3 uniprotkb:Q726S8 intact:EBI-10089049|ensemblbacteria:AAS95848 intact:EBI-10065726|ensemblbacteria:AAS97499 psi-mi:q72cb3_desvh(display_long)|uniprotkb:DVU_1370(locus name) psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089046 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010589.1|refseq:WP_010938665.1|ensemblbacteria:AAS95848(transcript)|ensemblbacteria:DVU_1370(gene)|entrezgene/locuslink:2793503(identity) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:7iBEKOmEzchbgIkhL1lWMt16KtM882 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 intact-crc:CF2D4B6E4083B16E|rigid:2syeegERvhw+3pD2Ljexe65yH5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB3 uniprotkb:Q72AW5 intact:EBI-10089049|ensemblbacteria:AAS95848 intact:EBI-10068375|ensemblbacteria:AAS96351 psi-mi:q72cb3_desvh(display_long)|uniprotkb:DVU_1370(locus name) psi-mi:q72aw5_desvh(display_long)|uniprotkb:DVU_1875(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089046 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010589.1|refseq:WP_010938665.1|ensemblbacteria:AAS95848(transcript)|ensemblbacteria:DVU_1370(gene)|entrezgene/locuslink:2793503(identity) refseq:YP_011092.1|refseq:WP_010939161.1|ensemblbacteria:AAS96351(transcript)|ensemblbacteria:DVU_1875(gene)|entrezgene/locuslink:2794319(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:7iBEKOmEzchbgIkhL1lWMt16KtM882 rogid:teM1VjT6+wAHBOOgznm0s6z3ny0882 intact-crc:CF2D4B6E4083B16E|rigid:2syeegERvhw+3pD2Ljexe65yH5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB3 uniprotkb:Q72E04 intact:EBI-10089049|ensemblbacteria:AAS95848 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:q72cb3_desvh(display_long)|uniprotkb:DVU_1370(locus name) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089046 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010589.1|refseq:WP_010938665.1|ensemblbacteria:AAS95848(transcript)|ensemblbacteria:DVU_1370(gene)|entrezgene/locuslink:2793503(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121|entrezgene/locuslink:2794846(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:7iBEKOmEzchbgIkhL1lWMt16KtM882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 intact-crc:CF2D4B6E4083B16E|rigid:2syeegERvhw+3pD2Ljexe65yH5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB3 uniprotkb:Q72C62 intact:EBI-10089049|ensemblbacteria:AAS95848 intact:EBI-10069095|ensemblbacteria:AAS95900 psi-mi:q72cb3_desvh(display_long)|uniprotkb:DVU_1370(locus name) psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089046 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010589.1|refseq:WP_010938665.1|ensemblbacteria:AAS95848(transcript)|ensemblbacteria:DVU_1370(gene)|entrezgene/locuslink:2793503(identity) interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:7iBEKOmEzchbgIkhL1lWMt16KtM882 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 intact-crc:CF2D4B6E4083B16E|rigid:2syeegERvhw+3pD2Ljexe65yH5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB3 uniprotkb:Q72AS3 intact:EBI-10089049|ensemblbacteria:AAS95848 intact:EBI-9012330 psi-mi:q72cb3_desvh(display_long)|uniprotkb:DVU_1370(locus name) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089046 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010589.1|refseq:WP_010938665.1|ensemblbacteria:AAS95848(transcript)|ensemblbacteria:DVU_1370(gene)|entrezgene/locuslink:2793503(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:7iBEKOmEzchbgIkhL1lWMt16KtM882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:CF2D4B6E4083B16E|rigid:2syeegERvhw+3pD2Ljexe65yH5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F19 uniprotkb:Q72C87 intact:EBI-10068421|ensemblbacteria:AAS94879 intact:EBI-10069359|ensemblbacteria:AAS95875 psi-mi:q72f19_desvh(display_long)|uniprotkb:DVU_0396(locus name)|uniprotkb:hup-1(gene name)|psi-mi:hup-1(display_short) psi-mi:q72c87_desvh(display_long)|uniprotkb:DVU_1397(locus name)|uniprotkb:bfr(gene name)|psi-mi:bfr(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089029 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_009620.1|interpro:IPR005684(Integration host factor, alpha subunit)|refseq:WP_010937703.1|ensemblbacteria:AAS94879(transcript)|ensemblbacteria:DVU_0396(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006310"(DNA recombination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006417"(regulation of translation)|entrezgene/locuslink:2796538(identity) interpro:IPR002024(Bacterioferritin)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_010616.1|refseq:WP_010938692.1|ensemblbacteria:AAS95875(transcript)|ensemblbacteria:DVU_1397(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0006826"(iron ion transport)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|entrezgene/locuslink:2794797(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.07" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:mNwdKUGDFbiz+xsocUEaTpv9PKs882 rogid:/YEQxIIVEft2Xb4CEZccQMQlPoM882 intact-crc:654CBB0C0F35B83C|rigid:OvHTG8TyIIORHFJdjSkd4D0cQu0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C80 uniprotkb:Q72EK0 intact:EBI-10069340|ensemblbacteria:AAS95882 intact:EBI-10070186|ensemblbacteria:AAS95059 psi-mi:q72c80_desvh(display_long)|uniprotkb:DVU_1404(locus name) psi-mi:q72ek0_desvh(display_long)|uniprotkb:DVU_0578(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089016 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR016431(Pyruvate-formate lyase-activating enzyme, predicted)|interpro:IPR027596|refseq:YP_010623.1|ensemblbacteria:AAS95882(transcript)|ensemblbacteria:DVU_1404(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR034457|entrezgene/locuslink:2794656(identity) interpro:IPR003786(Formate dehydrogenase, subunit FdhD)|interpro:IPR016193(Cytidine deaminase-like)|refseq:YP_009800.1|refseq:WP_010937881.1|ensemblbacteria:AAS95059(transcript)|ensemblbacteria:DVU_0578(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0016783"(sulfurtransferase activity)|entrezgene/locuslink:2794563(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.12" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:YUeCiVOSmTWJhBWC9uJKGKncyP8882 rogid:NyP55ZqUj1gFp7z6GJToFx+u/XI882 intact-crc:FBC28B81BAFB73CD|rigid:OoXKwKvy7dQU6hGyPWsKzK5HRSA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C74 uniprotkb:Q72DN5 intact:EBI-10088999|ensemblbacteria:AAS95888 intact:EBI-10067785|ensemblbacteria:AAS95374 psi-mi:q72c74_desvh(display_long)|uniprotkb:DVU_1410(locus name) psi-mi:aroc_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym)|uniprotkb:DVU_0894(locus name)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088996 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010629.1|ensemblbacteria:AAS95888(transcript)|ensemblbacteria:DVU_1410(gene)|entrezgene/locuslink:2794954(identity) interpro:IPR000453(Chorismate synthase)|interpro:IPR020541|refseq:YP_010115.1|refseq:WP_010938193.1|ensemblbacteria:AAS95374(transcript)|ensemblbacteria:DVU_0894(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR035904|entrezgene/locuslink:2794112(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.15" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:z7/0jUHm9nCsiNb/V0VrdebxiBI882 rogid:iHGB7L1SbAIWU9CoIggdBpLYneU882 intact-crc:3458FA5D19E92ECD|rigid:9V9BGx/aeagHZYuusoQZvn1XH+o false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C74 uniprotkb:Q72D45 intact:EBI-10088999|ensemblbacteria:AAS95888 intact:EBI-10069077|ensemblbacteria:AAS95565 psi-mi:q72c74_desvh(display_long)|uniprotkb:DVU_1410(locus name) psi-mi:q72d45_desvh(display_long)|uniprotkb:DVU_1085(locus name)|uniprotkb:phoU(gene name)|psi-mi:phoU(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088996 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010629.1|ensemblbacteria:AAS95888(transcript)|ensemblbacteria:DVU_1410(gene)|entrezgene/locuslink:2794954(identity) interpro:IPR026022|interpro:IPR028366|refseq:YP_010306.1|refseq:WP_010938384.1|ensemblbacteria:AAS95565(transcript)|ensemblbacteria:DVU_1085(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078|entrezgene/locuslink:2794463(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.25" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:z7/0jUHm9nCsiNb/V0VrdebxiBI882 rogid:8bRa7Ad8xK+IgqVObyH5pX3mm7Q882 intact-crc:3458FA5D19E92ECD|rigid:9V9BGx/aeagHZYuusoQZvn1XH+o false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729B0 uniprotkb:Q72CD1 intact:EBI-10067107|ensemblbacteria:AAS96914 intact:EBI-10069480|ensemblbacteria:AAS95830 psi-mi:q729b0_desvh(display_long)|uniprotkb:DVU_2442(locus name) psi-mi:q72cd1_desvh(display_long)|uniprotkb:DVU_1352(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089103 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR031107|interpro:IPR002068(Heat shock protein Hsp20)|interpro:IPR008978(HSP20-like chaperone)|refseq:YP_011654.1|refseq:WP_010939713.1|ensemblbacteria:AAS96914(transcript)|ensemblbacteria:DVU_2442(gene)|entrezgene/locuslink:2795433(identity) interpro:IPR007115(6-pyruvoyl tetrahydropterin synthase-related)|refseq:YP_010571.1|refseq:WP_010938647.1|ensemblbacteria:AAS95830(transcript)|ensemblbacteria:DVU_1352(gene)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0070497"(6-carboxy-5,6,7,8-tetrahydropterin synthase activity)|interpro:IPR038418|entrezgene/locuslink:2794918(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.09" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:MAFRzGTlmUX0b9AVJqBCZuGytWw882 rogid:5Tni/VXMEqcmxx2W+vUJd29bjes882 intact-crc:2460D0CBEF139D7A|rigid:3FVpny3oa2ocj1OjNSXZ+9n0hS4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE9 uniprotkb:Q729V5 intact:EBI-10087505|ensemblbacteria:AAS95812 intact:EBI-10089187|ensemblbacteria:AAS96716 psi-mi:tig_desvh(display_long)|uniprotkb:PPIase(gene name synonym)|uniprotkb:DVU_1334(locus name)|uniprotkb:tig(gene name)|psi-mi:tig(display_short) psi-mi:glgb_desvh(display_long)|uniprotkb:glgB(gene name)|psi-mi:glgB(display_short)|uniprotkb:"1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase"(gene name synonym)|uniprotkb:"Alpha-(1->4)-glucan branching enzyme"(gene name synonym)|uniprotkb:Glycogen branching enzyme(gene name synonym)|uniprotkb:DVU_2243(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089191 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005215(Trigger factor)|interpro:IPR008880(Trigger factor, C-terminal, bacterial)|interpro:IPR008881(Trigger factor, ribosome-binding, bacterial)|interpro:IPR027304|refseq:WP_010938629.1|refseq:YP_010553.1|ensemblbacteria:AAS95812(transcript)|ensemblbacteria:DVU_1334(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0007049"(cell cycle)|go:"GO:0015031"(protein transport)|go:"GO:0051301"(cell division)|interpro:IPR036611|interpro:IPR037041|entrezgene/locuslink:2794582(identity) interpro:IPR013780(Glycosyl hydrolase, family 13, all-beta)|interpro:IPR004193(Glycoside hydrolase, family 13, N-terminal)|interpro:IPR006047(Glycosyl hydrolase, family 13, catalytic region)|interpro:IPR006048(Alpha-amylase, C-terminal all beta)|interpro:IPR006407(1,4-alpha-glucan branching enzyme, core region)|interpro:IPR013783(Immunoglobulin-like fold)|interpro:IPR014756(Immunoglobulin E-set)|interpro:IPR017853(Glycoside hydrolase, catalytic core)|refseq:YP_011456.1|interpro:IPR044143|refseq:WP_010939518.1|ensemblbacteria:AAS96716(transcript)|ensemblbacteria:DVU_2243(gene)|go:"GO:0003844"(1,4-alpha-glucan branching enzyme activity)|go:"GO:0004553"(hydrolase activity, hydrolyzing O-glycosyl compounds)|go:"GO:0005978"(glycogen biosynthetic process)|go:"GO:0043169"(cation binding)|go:"GO:0102752"("1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis)")|interpro:IPR037439|entrezgene/locuslink:2795395(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:0DsKo13lsPnHvMMeGub4YeC18nI882 rogid:v8kFyB+J/Twp9HHuAKJBm9Wxd60882 intact-crc:F5131B9095CF95CC|rigid:/jCH119LUyp+/3q8Hej0Y74S3BI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE7 uniprotkb:Q726S5 intact:EBI-10089155|ensemblbacteria:AAS95814 intact:EBI-10089159|ensemblbacteria:AAS97502 psi-mi:clpx_desvh(display_long)|uniprotkb:clpX(gene name)|psi-mi:clpX(display_short)|uniprotkb:DVU_1336(locus name) psi-mi:q726s5_desvh(display_long)|uniprotkb:DVU_3031(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089162 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004487(ClpX, ATPase regulatory subunit)|interpro:IPR010603(Zinc finger, C4-type)|interpro:IPR019489|interpro:IPR027417|refseq:YP_010555.1|refseq:WP_010938631.1|ensemblbacteria:AAS95814(transcript)|ensemblbacteria:DVU_1336(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006457"(protein folding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0046983"(protein dimerization activity)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR038366|entrezgene/locuslink:2794584(identity) interpro:IPR010766(DRTGG)|interpro:IPR027417|interpro:IPR028979|refseq:YP_012242.1|refseq:WP_010940290.1|ensemblbacteria:AAS97502(transcript)|ensemblbacteria:DVU_3031(gene)|entrezgene/locuslink:2796448(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:mY7tQ2gySkCAoFvNfosszT4Zt5M882 rogid:fetV66+fEAzcqLKy6mRQcZAqYDM882 intact-crc:18AE8CA63CAA580B|rigid:jfTvkcmpvpxIUxvbMPaWA4ZtHDk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE7 uniprotkb:Q726S3 intact:EBI-10089155|ensemblbacteria:AAS95814 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:clpx_desvh(display_long)|uniprotkb:clpX(gene name)|psi-mi:clpX(display_short)|uniprotkb:DVU_1336(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089162 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004487(ClpX, ATPase regulatory subunit)|interpro:IPR010603(Zinc finger, C4-type)|interpro:IPR019489|interpro:IPR027417|refseq:YP_010555.1|refseq:WP_010938631.1|ensemblbacteria:AAS95814(transcript)|ensemblbacteria:DVU_1336(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006457"(protein folding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0046983"(protein dimerization activity)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR038366|entrezgene/locuslink:2794584(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:mY7tQ2gySkCAoFvNfosszT4Zt5M882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:18AE8CA63CAA580B|rigid:jfTvkcmpvpxIUxvbMPaWA4ZtHDk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE7 uniprotkb:Q729I6 intact:EBI-10089155|ensemblbacteria:AAS95814 intact:EBI-10065723|ensemblbacteria:AAS96837 psi-mi:clpx_desvh(display_long)|uniprotkb:clpX(gene name)|psi-mi:clpX(display_short)|uniprotkb:DVU_1336(locus name) psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089162 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004487(ClpX, ATPase regulatory subunit)|interpro:IPR010603(Zinc finger, C4-type)|interpro:IPR019489|interpro:IPR027417|refseq:YP_010555.1|refseq:WP_010938631.1|ensemblbacteria:AAS95814(transcript)|ensemblbacteria:DVU_1336(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006457"(protein folding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0046983"(protein dimerization activity)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR038366|entrezgene/locuslink:2794584(identity) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.19" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:mY7tQ2gySkCAoFvNfosszT4Zt5M882 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 intact-crc:18AE8CA63CAA580B|rigid:jfTvkcmpvpxIUxvbMPaWA4ZtHDk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE7 uniprotkb:Q72A93 intact:EBI-10089155|ensemblbacteria:AAS95814 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:clpx_desvh(display_long)|uniprotkb:clpX(gene name)|psi-mi:clpX(display_short)|uniprotkb:DVU_1336(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089162 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004487(ClpX, ATPase regulatory subunit)|interpro:IPR010603(Zinc finger, C4-type)|interpro:IPR019489|interpro:IPR027417|refseq:YP_010555.1|refseq:WP_010938631.1|ensemblbacteria:AAS95814(transcript)|ensemblbacteria:DVU_1336(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006457"(protein folding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0046983"(protein dimerization activity)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR038366|entrezgene/locuslink:2794584(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.16" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:mY7tQ2gySkCAoFvNfosszT4Zt5M882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:18AE8CA63CAA580B|rigid:jfTvkcmpvpxIUxvbMPaWA4ZtHDk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72CE6 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10069535|ensemblbacteria:AAS95815 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:lon_desvh(display_long)|uniprotkb:ATP-dependent protease La(gene name synonym)|uniprotkb:DVU_1337(locus name)|uniprotkb:lon(gene name)|psi-mi:lon(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089142 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR003111(Peptidase S16, lon N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004815(Peptidase S16, ATP-dependent protease La)|interpro:IPR008268(Peptidase S16, active site)|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR015947(PUA-like)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|interpro:IPR027543|refseq:YP_010556.1|refseq:WP_010938632.1|ensemblbacteria:AAS95815(transcript)|ensemblbacteria:DVU_1337(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0034605"(cellular response to heat)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794585(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.17" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:K+5mhLOOcEzqnf49msI210n9o+s882 intact-crc:2BCDA765556CDCA8|rigid:PIpOQ8jhV2HK7mZhzhavjM6uiD4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CD9 uniprotkb:Q726S3 intact:EBI-10087615|ensemblbacteria:AAS95822 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:ispg_desvh(display_long)|uniprotkb:"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase"(gene name synonym)|uniprotkb:DVU_1344(locus name)|uniprotkb:ispG(gene name)|psi-mi:ispG(display_short) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089116 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004588(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type)|interpro:IPR011005(Dihydropteroate synthase-like)|interpro:IPR016425(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial)|refseq:YP_010563.1|ensemblbacteria:AAS95822(transcript)|ensemblbacteria:DVU_1344(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046429"(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795143(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:caynhpgg6DreuOCdNYjsh6v10RU882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:5D693B2D62053A73|rigid:rTLtWmAPlzwcvzmS3Wa1gRsBsOg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CN2 uniprotkb:Q72DV4 intact:EBI-10064808|ensemblbacteria:AAS95729 intact:EBI-10070493|ensemblbacteria:AAS95305 psi-mi:q72cn2_desvh(display_long)|uniprotkb:DVU_1251(locus name) psi-mi:seca_desvh(display_long)|uniprotkb:DVU_0825(locus name)|uniprotkb:secA(gene name)|psi-mi:secA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089249 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010470.1|refseq:WP_010938547.1|ensemblbacteria:AAS95729(transcript)|ensemblbacteria:DVU_1251(gene)|entrezgene/locuslink:2795032(identity) interpro:IPR000185(SecA protein)|interpro:IPR004027(SEC-C motif)|interpro:IPR011115(SecA DEAD-like)|interpro:IPR011116(SecA Wing and Scaffold)|interpro:IPR011130(SecA preprotein cross-linking region)|interpro:IPR014018(SecA motor DEAD)|interpro:IPR020937|interpro:IPR027417|refseq:WP_010938126.1|refseq:YP_010046.1|ensemblbacteria:AAS95305(transcript)|ensemblbacteria:DVU_0825(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0008564"(protein-exporting ATPase activity)|go:"GO:0017038"(protein import)|go:"GO:0046872"(metal ion binding)|go:"GO:0065002"(intracellular protein transmembrane transport)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR044722|interpro:IPR036266|interpro:IPR036670|entrezgene/locuslink:2796172(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:543MQPkYMIzuko87WvT+PJxPUTY882 rogid:d9MiQ/edCFySP/pJp7NN47vSXF0882 intact-crc:35EBCD01308FC557|rigid:8LSl4HCLBBr8nwkIyIShfqRfI54 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CN2 uniprotkb:Q729C4 intact:EBI-10064808|ensemblbacteria:AAS95729 intact:EBI-10067155|ensemblbacteria:AAS96900 psi-mi:q72cn2_desvh(display_long)|uniprotkb:DVU_1251(locus name) psi-mi:q729c4_desvh(display_long)|uniprotkb:DVU_2427(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089249 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010470.1|refseq:WP_010938547.1|ensemblbacteria:AAS95729(transcript)|ensemblbacteria:DVU_1251(gene)|entrezgene/locuslink:2795032(identity) refseq:YP_011640.1|ensemblbacteria:AAS96900(transcript)|ensemblbacteria:DVU_2427(gene)|entrezgene/locuslink:2794368(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:543MQPkYMIzuko87WvT+PJxPUTY882 rogid:AAuZ05FpdYBy8r9F3WpZt/Q0NvE882 intact-crc:35EBCD01308FC557|rigid:8LSl4HCLBBr8nwkIyIShfqRfI54 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X5 uniprotkb:Q72CM6 intact:EBI-10089235|ensemblbacteria:AAS96695 intact:EBI-10066180|ensemblbacteria:AAS95735 psi-mi:q729x5_desvh(display_long)|uniprotkb:ssb(gene name)|psi-mi:ssb(display_short)|uniprotkb:DVU_2222(locus name) psi-mi:q72cm6_desvh(display_long)|uniprotkb:DVU_1257(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089232 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000424(Primosome PriB/single-strand DNA-binding)|interpro:IPR011344(Single-strand DNA-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|refseq:YP_011435.1|refseq:WP_010939497.1|ensemblbacteria:AAS96695(transcript)|ensemblbacteria:DVU_2222(gene)|go:"GO:0003697"(single-stranded DNA binding)|go:"GO:0006260"(DNA replication)|entrezgene/locuslink:2795369(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_010476.1|refseq:WP_010938553.1|ensemblbacteria:AAS95735(transcript)|ensemblbacteria:DVU_1257(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2794603(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.10" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:F9kcK+/25Qack7enhcAsmv39CJQ882 rogid:ruXcKfPiOxTsYJSnCzXA90m2O+o882 intact-crc:B9BB3D8CA94E5E8D|rigid:0Tf6GQJz3+qUaONxuC13SuPzITI false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CK0 uniprotkb:Q726B7 intact:EBI-10069053|ensemblbacteria:AAS95761 intact:EBI-10089204|ensemblbacteria:AAS97655 psi-mi:q72ck0_desvh(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:DVU_1283(locus name)|uniprotkb:galU(gene name)|psi-mi:galU(display_short) psi-mi:q726b7_desvh(display_long)|uniprotkb:roO(gene name)|psi-mi:roO(display_short)|uniprotkb:DVU_3185(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089208 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR029044|refseq:YP_010502.1|ensemblbacteria:AAS95761(transcript)|ensemblbacteria:DVU_1283(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process)|entrezgene/locuslink:2794349(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR008254(Flavodoxin/nitric oxide synthase)|interpro:IPR016440(Rubredoxin-oxygen oxidoreductase)|interpro:IPR029039|refseq:YP_012395.1|refseq:WP_010940443.1|ensemblbacteria:AAS97655(transcript)|ensemblbacteria:DVU_3185(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036866|entrezgene/locuslink:2793835(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:d6iZYQ9JPNw37P78x10YDxMTefo882 rogid:CNeOdvwXTJMCaulcUy+HDmdOOJY882 intact-crc:D10D96CCF2CD45D2|rigid:NWqw+gsuQASREZ/pFPFmW6dTAiQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CK0 uniprotkb:Q72CA2 intact:EBI-10069053|ensemblbacteria:AAS95761 intact:EBI-10089211 psi-mi:q72ck0_desvh(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:DVU_1283(locus name)|uniprotkb:galU(gene name)|psi-mi:galU(display_short) psi-mi:q72ca2_desvh(display_long)|uniprotkb:DVU_1382(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089208 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR029044|refseq:YP_010502.1|ensemblbacteria:AAS95761(transcript)|ensemblbacteria:DVU_1283(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process)|entrezgene/locuslink:2794349(identity) interpro:IPR000361(HesB/YadR/YfhF-like)|refseq:YP_010601.1|interpro:IPR035903|entrezgene/locuslink:2795123(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.16" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:d6iZYQ9JPNw37P78x10YDxMTefo882 rogid:X59vNQXKJxE1vR63FSO+tfEiBGg882 intact-crc:D10D96CCF2CD45D2|rigid:NWqw+gsuQASREZ/pFPFmW6dTAiQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CK0 uniprotkb:Q729A3 intact:EBI-10069053|ensemblbacteria:AAS95761 intact:EBI-10071362|ensemblbacteria:AAS96921 psi-mi:q72ck0_desvh(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:DVU_1283(locus name)|uniprotkb:galU(gene name)|psi-mi:galU(display_short) psi-mi:metk_desvh(display_long)|uniprotkb:MAT(gene name synonym)|uniprotkb:Methionine adenosyltransferase(gene name synonym)|uniprotkb:DVU_2449(locus name)|uniprotkb:metK(gene name)|psi-mi:metK(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089208 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR029044|refseq:YP_010502.1|ensemblbacteria:AAS95761(transcript)|ensemblbacteria:DVU_1283(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process)|entrezgene/locuslink:2794349(identity) interpro:IPR002133(S-adenosylmethionine synthetase)|interpro:IPR022628|interpro:IPR022629|interpro:IPR022630|interpro:IPR022631|interpro:IPR022636|refseq:YP_011661.1|refseq:WP_010939720.1|ensemblbacteria:AAS96921(transcript)|ensemblbacteria:DVU_2449(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004478"(methionine adenosyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006556"(S-adenosylmethionine biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|entrezgene/locuslink:2796626(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.01" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:d6iZYQ9JPNw37P78x10YDxMTefo882 rogid:UBqFyeh7iE7MyB+DP/nQDl+woeI882 intact-crc:D10D96CCF2CD45D2|rigid:NWqw+gsuQASREZ/pFPFmW6dTAiQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D85 uniprotkb:Q72A93 intact:EBI-10064794|ensemblbacteria:AAS95524 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089315 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:D263A4092369121F|rigid:vFQJBxP+Ua+Hs02We5I0XrY6q80 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D85 uniprotkb:Q72AS3 intact:EBI-10064794|ensemblbacteria:AAS95524 intact:EBI-9012330 psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089315 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.10" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:D263A4092369121F|rigid:vFQJBxP+Ua+Hs02We5I0XrY6q80 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D39 uniprotkb:Q72A92 intact:EBI-10089299|ensemblbacteria:AAS95571 intact:EBI-10087612|ensemblbacteria:AAS96578 psi-mi:q72d39_desvh(display_long)|uniprotkb:DVU_1091(locus name) psi-mi:q72a92_desvh(display_long)|uniprotkb:DVU_2105(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089302 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR020536|refseq:YP_010312.1|refseq:WP_010938390.1|ensemblbacteria:AAS95571(transcript)|ensemblbacteria:DVU_1091(gene)|go:"GO:0004810"(tRNA adenylyltransferase activity)|entrezgene/locuslink:2794070(identity) refseq:YP_011318.1|ensemblbacteria:AAS96578(transcript)|ensemblbacteria:DVU_2105(gene)|entrezgene/locuslink:2793377(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:/ji0KX/xdJlSFifR31NM4TVhBb4882 rogid:JcyL2NcJci/cT5X6RwKQ1/Qy2rU882 intact-crc:AB33C2B7AC4AC85C|rigid:KIJNZCEMN5aSDZU/lJBTsi8ueew false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72A92 uniprotkb:Q72CV4 intact:EBI-10087612|ensemblbacteria:AAS96578 intact:EBI-10065903|ensemblbacteria:AAS95657 psi-mi:q72a92_desvh(display_long)|uniprotkb:DVU_2105(locus name) psi-mi:q72cv4_desvh(display_long)|uniprotkb:DVU_1179(locus name)|uniprotkb:aor(gene name)|psi-mi:aor(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089286 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011318.1|ensemblbacteria:AAS96578(transcript)|ensemblbacteria:DVU_2105(gene)|entrezgene/locuslink:2793377(identity) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|refseq:YP_010398.1|refseq:WP_010938476.1|ensemblbacteria:AAS95657(transcript)|ensemblbacteria:DVU_1179(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2796664(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.08" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:JcyL2NcJci/cT5X6RwKQ1/Qy2rU882 rogid://UHaftptjuUgn+rNqOh5dzqgdY882 intact-crc:B92B3B1F99100DBA|rigid:b/ES1R92fNdEl5xJkctNtHEtZ0c false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CS8 uniprotkb:Q72AD3 intact:EBI-10069623|ensemblbacteria:AAS95683 intact:EBI-10065720|ensemblbacteria:AAS96537 psi-mi:acp_desvh(display_long)|uniprotkb:DVU_1205(locus name)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short) psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089269 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:YP_010424.1|refseq:WP_010938501.1|ensemblbacteria:AAS95683(transcript)|ensemblbacteria:DVU_1205(gene)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036736|entrezgene/locuslink:2796682(identity) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:PYHz5JnxoFN5sTIaU0qICLcgBZQ882 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 intact-crc:7EE8FF4493923BEC|rigid:kfLJ9VxZk8Y8Htgv6DERw7KGCAY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CS8 uniprotkb:Q72DP3 intact:EBI-10069623|ensemblbacteria:AAS95683 intact:EBI-10089266|ensemblbacteria:AAS95366 psi-mi:acp_desvh(display_long)|uniprotkb:DVU_1205(locus name)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short) psi-mi:q72dp3_desvh(display_long)|uniprotkb:DVU_0886(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089269 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:YP_010424.1|refseq:WP_010938501.1|ensemblbacteria:AAS95683(transcript)|ensemblbacteria:DVU_1205(gene)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036736|entrezgene/locuslink:2796682(identity) interpro:IPR006683(Thioesterase superfamily)|interpro:IPR006684(4-hydroxybenzoyl-CoA thioesterase)|interpro:IPR029069|refseq:YP_010107.1|refseq:WP_010938185.1|ensemblbacteria:AAS95366(transcript)|ensemblbacteria:DVU_0886(gene)|go:"GO:0016787"(hydrolase activity)|entrezgene/locuslink:2794198(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:PYHz5JnxoFN5sTIaU0qICLcgBZQ882 rogid:NqOsRCWElJoH2rNAktUDAdvKvmc882 intact-crc:7EE8FF4493923BEC|rigid:kfLJ9VxZk8Y8Htgv6DERw7KGCAY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DD5 uniprotkb:Q729C4 intact:EBI-10089403|ensemblbacteria:AAS95474 intact:EBI-10067155|ensemblbacteria:AAS96900 psi-mi:q72dd5_desvh(display_long)|uniprotkb:DVU_0994(locus name) psi-mi:q729c4_desvh(display_long)|uniprotkb:DVU_2427(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089400 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010215.1|ensemblbacteria:AAS95474(transcript)|ensemblbacteria:DVU_0994(gene)|entrezgene/locuslink:2794151(identity) refseq:YP_011640.1|ensemblbacteria:AAS96900(transcript)|ensemblbacteria:DVU_2427(gene)|entrezgene/locuslink:2794368(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:5czwWMzpL82lYD+z6BRotGJruOE882 rogid:AAuZ05FpdYBy8r9F3WpZt/Q0NvE882 intact-crc:46A5F1A35228C466|rigid:mH20dB2ki/uRb+J/J2NzJ+PGJgA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DD5 uniprotkb:Q726B7 intact:EBI-10089403|ensemblbacteria:AAS95474 intact:EBI-10089204|ensemblbacteria:AAS97655 psi-mi:q72dd5_desvh(display_long)|uniprotkb:DVU_0994(locus name) psi-mi:q726b7_desvh(display_long)|uniprotkb:roO(gene name)|psi-mi:roO(display_short)|uniprotkb:DVU_3185(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089400 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010215.1|ensemblbacteria:AAS95474(transcript)|ensemblbacteria:DVU_0994(gene)|entrezgene/locuslink:2794151(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR008254(Flavodoxin/nitric oxide synthase)|interpro:IPR016440(Rubredoxin-oxygen oxidoreductase)|interpro:IPR029039|refseq:YP_012395.1|refseq:WP_010940443.1|ensemblbacteria:AAS97655(transcript)|ensemblbacteria:DVU_3185(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036866|entrezgene/locuslink:2793835(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:5czwWMzpL82lYD+z6BRotGJruOE882 rogid:CNeOdvwXTJMCaulcUy+HDmdOOJY882 intact-crc:46A5F1A35228C466|rigid:mH20dB2ki/uRb+J/J2NzJ+PGJgA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DB6 uniprotkb:Q729X2 intact:EBI-10068652|ensemblbacteria:AAS95493 intact:EBI-10067430|ensemblbacteria:AAS96698 psi-mi:q72db6_desvh(display_long)|uniprotkb:DVU_1013(locus name) psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089379 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003423(Outer membrane efflux protein)|interpro:IPR010130(Type I secretion outer membrane protein, TolC)|refseq:YP_010234.1|refseq:WP_010938312.1|ensemblbacteria:AAS95493(transcript)|ensemblbacteria:DVU_1013(gene)|go:"GO:0015562"(efflux transmembrane transporter activity)|go:"GO:0019867"(outer membrane)|entrezgene/locuslink:2793736(identity) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.05" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:i+l9PTpDDituM8+y0IRIa3Ck/3w882 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 intact-crc:8BC2F31964FE2BA1|rigid:t5Pb+rt3BnKeuIW5j4ezt3PmsQo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DB6 uniprotkb:Q72CM6 intact:EBI-10068652|ensemblbacteria:AAS95493 intact:EBI-10066180|ensemblbacteria:AAS95735 psi-mi:q72db6_desvh(display_long)|uniprotkb:DVU_1013(locus name) psi-mi:q72cm6_desvh(display_long)|uniprotkb:DVU_1257(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089379 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003423(Outer membrane efflux protein)|interpro:IPR010130(Type I secretion outer membrane protein, TolC)|refseq:YP_010234.1|refseq:WP_010938312.1|ensemblbacteria:AAS95493(transcript)|ensemblbacteria:DVU_1013(gene)|go:"GO:0015562"(efflux transmembrane transporter activity)|go:"GO:0019867"(outer membrane)|entrezgene/locuslink:2793736(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_010476.1|refseq:WP_010938553.1|ensemblbacteria:AAS95735(transcript)|ensemblbacteria:DVU_1257(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2794603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.16" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:i+l9PTpDDituM8+y0IRIa3Ck/3w882 rogid:ruXcKfPiOxTsYJSnCzXA90m2O+o882 intact-crc:8BC2F31964FE2BA1|rigid:t5Pb+rt3BnKeuIW5j4ezt3PmsQo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DB6 uniprotkb:Q72A89 intact:EBI-10068652|ensemblbacteria:AAS95493 intact:EBI-10088372|ensemblbacteria:AAS96581 psi-mi:q72db6_desvh(display_long)|uniprotkb:DVU_1013(locus name) psi-mi:q72a89_desvh(display_long)|uniprotkb:DVU_2108(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089379 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003423(Outer membrane efflux protein)|interpro:IPR010130(Type I secretion outer membrane protein, TolC)|refseq:YP_010234.1|refseq:WP_010938312.1|ensemblbacteria:AAS95493(transcript)|ensemblbacteria:DVU_1013(gene)|go:"GO:0015562"(efflux transmembrane transporter activity)|go:"GO:0019867"(outer membrane)|entrezgene/locuslink:2793736(identity) interpro:IPR033913|interpro:IPR003731(Dinitrogenase iron-molybdenum cofactor biosynthesis)|refseq:YP_011321.1|refseq:WP_010939385.1|ensemblbacteria:AAS96581(transcript)|ensemblbacteria:DVU_2108(gene)|go:"GO:0009399"(nitrogen fixation)|interpro:IPR036105|entrezgene/locuslink:2793380(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.15" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:i+l9PTpDDituM8+y0IRIa3Ck/3w882 rogid:+uf1QymSwGF2gCbSBQ24eZ0yS1M882 intact-crc:8BC2F31964FE2BA1|rigid:t5Pb+rt3BnKeuIW5j4ezt3PmsQo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D99 uniprotkb:Q72C29 intact:EBI-10088905|ensemblbacteria:AAS95510 intact:EBI-10065571|ensemblbacteria:AAS95933 psi-mi:q72d99_desvh(display_long)|uniprotkb:DVU_1030(locus name) psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089345 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_010251.1|refseq:WP_010938329.1|ensemblbacteria:AAS95510(transcript)|ensemblbacteria:DVU_1030(gene)|go:"GO:0005737"(cytoplasm)|entrezgene/locuslink:2794527(identity) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:p8fTyHL7x5SUBE3eKzKKJupCYac882 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 intact-crc:CB491B233F3D208F|rigid:XAVL2FS/hFJUblLaCJcZ1TTrVf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D99 uniprotkb:Q72DA8 intact:EBI-10088905|ensemblbacteria:AAS95510 intact:EBI-10067870|ensemblbacteria:AAS95501 psi-mi:q72d99_desvh(display_long)|uniprotkb:DVU_1030(locus name) psi-mi:q72da8_desvh(display_long)|uniprotkb:DVU_1021(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089345 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_010251.1|refseq:WP_010938329.1|ensemblbacteria:AAS95510(transcript)|ensemblbacteria:DVU_1030(gene)|go:"GO:0005737"(cytoplasm)|entrezgene/locuslink:2794527(identity) interpro:IPR000825(SUF system FeS cluster assembly, SufBD)|refseq:YP_010242.1|refseq:WP_010938320.1|ensemblbacteria:AAS95501(transcript)|ensemblbacteria:DVU_1021(gene)|go:"GO:0016226"(iron-sulfur cluster assembly)|interpro:IPR037284|entrezgene/locuslink:2793744(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:p8fTyHL7x5SUBE3eKzKKJupCYac882 rogid:fpheqrH7wLrgIp+jXGiRXV9K8yY882 intact-crc:CB491B233F3D208F|rigid:XAVL2FS/hFJUblLaCJcZ1TTrVf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D99 uniprotkb:Q72BF0 intact:EBI-10088905|ensemblbacteria:AAS95510 intact:EBI-10069353|ensemblbacteria:AAS96163 psi-mi:q72d99_desvh(display_long)|uniprotkb:DVU_1030(locus name) psi-mi:q72bf0_desvh(display_long)|uniprotkb:DVU_1686(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089345 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_010251.1|refseq:WP_010938329.1|ensemblbacteria:AAS95510(transcript)|ensemblbacteria:DVU_1030(gene)|go:"GO:0005737"(cytoplasm)|entrezgene/locuslink:2794527(identity) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR008824(DNA helicase, Holliday junction RuvB type, N-terminal)|interpro:IPR008921(DNA polymerase III clamp loader subunit, C-terminal)|interpro:IPR021886|interpro:IPR027417|refseq:YP_010904.1|interpro:IPR032423|refseq:WP_010938975.1|ensemblbacteria:AAS96163(transcript)|ensemblbacteria:DVU_1686(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003677"(DNA binding)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0009378"(four-way junction helicase activity)|entrezgene/locuslink:2794914(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:p8fTyHL7x5SUBE3eKzKKJupCYac882 rogid:Ztr2GDn8VxuIRhLODA0jfi/vW3Q882 intact-crc:CB491B233F3D208F|rigid:XAVL2FS/hFJUblLaCJcZ1TTrVf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AE2 uniprotkb:Q72DH7 intact:EBI-10067762|ensemblbacteria:AAS96528 intact:EBI-10089470|ensemblbacteria:AAS95432 psi-mi:q72ae2_desvh(display_long)|uniprotkb:metG(gene name)|psi-mi:metG(display_short)|uniprotkb:Methionyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2055(locus name) psi-mi:q72dh7_desvh(display_long)|uniprotkb:DVU_0952(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089473 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041872|interpro:IPR033911|interpro:IPR002547(tRNA-binding region)|interpro:IPR004495(Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR014758(Methionyl-tRNA synthetase, class Ia, N-terminal)|interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|interpro:IPR023457|refseq:WP_010939333.1|refseq:YP_011268.1|interpro:IPR032678|ensemblbacteria:AAS96528(transcript)|ensemblbacteria:DVU_2055(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004825"(methionine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006431"(methionyl-tRNA aminoacylation)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2796479(identity) interpro:IPR005235(Conserved hypothetical protein CHP00282)|interpro:IPR029052|refseq:YP_010173.1|refseq:WP_010938251.1|ensemblbacteria:AAS95432(transcript)|ensemblbacteria:DVU_0952(gene)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795148(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.03" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:h1kUEOwSshrNiJpCu6I400O/Ay0882 rogid:atgn/L7NN4xNICzmtISeHHpXpJg882 intact-crc:321BE56BBAC593B4|rigid:t5jTnKhpNb6+3P0fpmp5UJWYNZ0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DG5 uniprotkb:Q72C12 intact:EBI-10089436|ensemblbacteria:AAS95444 intact:EBI-10068160|ensemblbacteria:AAS95950 psi-mi:q72dg5_desvh(display_long)|uniprotkb:DVU_0964(locus name) psi-mi:q72c12_desvh(display_long)|uniprotkb:DVU_1472(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089433 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006096(Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal)|interpro:IPR028971|refseq:YP_010185.1|refseq:WP_010938263.1|ensemblbacteria:AAS95444(transcript)|ensemblbacteria:DVU_0964(gene)|go:"GO:0004352"("glutamate dehydrogenase (NAD+) activity")|go:"GO:0019551"(glutamate catabolic process to 2-oxoglutarate)|interpro:IPR036291|entrezgene/locuslink:2794467(identity) refseq:WP_011792370.1|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|ensemblbacteria:AAS95950(transcript)|ensemblbacteria:DVU_1472(gene)|interpro:IPR041699|entrezgene/locuslink:2794141(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:riAGR25CPsQiWwV2m3kwDU52mSw882 rogid:HXduubtYgFDudVqnqaHL/EtV2nE882 intact-crc:7CD37B2FEE856CFF|rigid:GhNEkUXcCBynDZYzf4Grmt/FRi4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DG5 uniprotkb:Q729F0 intact:EBI-10089436|ensemblbacteria:AAS95444 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q72dg5_desvh(display_long)|uniprotkb:DVU_0964(locus name) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089433 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006096(Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal)|interpro:IPR028971|refseq:YP_010185.1|refseq:WP_010938263.1|ensemblbacteria:AAS95444(transcript)|ensemblbacteria:DVU_0964(gene)|go:"GO:0004352"("glutamate dehydrogenase (NAD+) activity")|go:"GO:0019551"(glutamate catabolic process to 2-oxoglutarate)|interpro:IPR036291|entrezgene/locuslink:2794467(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:riAGR25CPsQiWwV2m3kwDU52mSw882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:7CD37B2FEE856CFF|rigid:GhNEkUXcCBynDZYzf4Grmt/FRi4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DG5 uniprotkb:Q72C29 intact:EBI-10089436|ensemblbacteria:AAS95444 intact:EBI-10065571|ensemblbacteria:AAS95933 psi-mi:q72dg5_desvh(display_long)|uniprotkb:DVU_0964(locus name) psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089433 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006096(Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal)|interpro:IPR028971|refseq:YP_010185.1|refseq:WP_010938263.1|ensemblbacteria:AAS95444(transcript)|ensemblbacteria:DVU_0964(gene)|go:"GO:0004352"("glutamate dehydrogenase (NAD+) activity")|go:"GO:0019551"(glutamate catabolic process to 2-oxoglutarate)|interpro:IPR036291|entrezgene/locuslink:2794467(identity) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:riAGR25CPsQiWwV2m3kwDU52mSw882 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 intact-crc:7CD37B2FEE856CFF|rigid:GhNEkUXcCBynDZYzf4Grmt/FRi4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FB5 uniprotkb:Q72DE6 intact:EBI-10071877|ensemblbacteria:AAS94782 intact:EBI-10069542|ensemblbacteria:AAS95463 psi-mi:q72fb5_desvh(display_long)|uniprotkb:DVU_0299(locus name) psi-mi:q72de6_desvh(display_long)|uniprotkb:DVU_0983(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089420 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_009523.1|refseq:WP_010937606.1|ensemblbacteria:AAS94782(transcript)|ensemblbacteria:DVU_0299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2795183(identity) interpro:IPR003729(Protein of unknown function DUF151)|refseq:YP_010204.1|refseq:WP_010938282.1|ensemblbacteria:AAS95463(transcript)|ensemblbacteria:DVU_0983(gene)|go:"GO:0004518"(nuclease activity)|interpro:IPR036104|entrezgene/locuslink:2793325(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.03" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:8tqFEr175OJSos2ldYVTQoDY5kM882 rogid:lyEmS5ln0s8rv5N6bjV4OQwaYSY882 intact-crc:6BD023B0D94A4C2C|rigid:NStGa05cCjwMyzl64yps4mpPEEA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DX1 uniprotkb:Q729A8 intact:EBI-10068330|ensemblbacteria:AAS95288 intact:EBI-10067088|ensemblbacteria:AAS96916 psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:q729a8_desvh(display_long)|uniprotkb:DVU_2444(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089532 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928|entrezgene/locuslink:2796531(identity) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011656.1|refseq:WP_010939715.1|ensemblbacteria:AAS96916(transcript)|ensemblbacteria:DVU_2444(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187|entrezgene/locuslink:2796621(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 rogid:uLsLwVWIWtrawkoz/HUPrhjN3kc882 intact-crc:FF836CF45297AF55|rigid:478AxSjKOdnWV55iN94Ams/EmpY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DX1 uniprotkb:Q72A89 intact:EBI-10068330|ensemblbacteria:AAS95288 intact:EBI-10088372|ensemblbacteria:AAS96581 psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:q72a89_desvh(display_long)|uniprotkb:DVU_2108(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089532 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928|entrezgene/locuslink:2796531(identity) interpro:IPR033913|interpro:IPR003731(Dinitrogenase iron-molybdenum cofactor biosynthesis)|refseq:YP_011321.1|refseq:WP_010939385.1|ensemblbacteria:AAS96581(transcript)|ensemblbacteria:DVU_2108(gene)|go:"GO:0009399"(nitrogen fixation)|interpro:IPR036105|entrezgene/locuslink:2793380(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.05" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 rogid:+uf1QymSwGF2gCbSBQ24eZ0yS1M882 intact-crc:FF836CF45297AF55|rigid:478AxSjKOdnWV55iN94Ams/EmpY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DV2 uniprotkb:Q72EL2 intact:EBI-10089519|ensemblbacteria:AAS95307 intact:EBI-10071170|ensemblbacteria:AAS95047 psi-mi:q72dv2_desvh(display_long)|uniprotkb:DVU_0827(locus name) psi-mi:q72el2_desvh(display_long)|uniprotkb:DVU_0566(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089516 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004113(FAD-linked oxidase, C-terminal)|interpro:IPR006094(FAD linked oxidase, N-terminal)|interpro:IPR016164(FAD-linked oxidase-like, C-terminal)|interpro:IPR016166(FAD-binding, type 2)|interpro:IPR016171(Vanillyl-alcohol oxidase, C-terminal subdomain 2)|refseq:YP_010048.1|refseq:WP_010938128.1|ensemblbacteria:AAS95307(transcript)|ensemblbacteria:DVU_0827(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0071949"(FAD binding)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR036318|entrezgene/locuslink:2796174(identity) interpro:IPR003018(GAF)|interpro:IPR029016|refseq:YP_009788.1|refseq:WP_010937870.1|ensemblbacteria:AAS95047(transcript)|ensemblbacteria:DVU_0566(gene)|entrezgene/locuslink:2795891(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:WXnPKhgY3hBl4g4C+reqvPEXU3I882 rogid:QaAbABuSDEybh5AJcGp1IaqU5/8882 intact-crc:28FBE7C2DCB171AE|rigid:EU1XxUUVIPWa8HswpS4PTmk5Cl4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DQ3 uniprotkb:Q729C4 intact:EBI-10070180|ensemblbacteria:AAS95356 intact:EBI-10067155|ensemblbacteria:AAS96900 psi-mi:q72dq3_desvh(display_long)|uniprotkb:rnj(gene name)|psi-mi:rnj(display_short)|uniprotkb:DVU_0876(locus name) psi-mi:q729c4_desvh(display_long)|uniprotkb:DVU_2427(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089503 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR001587(Protein of unknown function UPF0036, conserved site)|interpro:IPR004613(Conserved hypothetical protein MG423)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|refseq:YP_010097.1|interpro:IPR030854|refseq:WP_010938175.1|ensemblbacteria:AAS95356(transcript)|ensemblbacteria:DVU_0876(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0004534"(5'-3' exoribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR036866|interpro:IPR042173|interpro:IPR041636|entrezgene/locuslink:2795130(identity) refseq:YP_011640.1|ensemblbacteria:AAS96900(transcript)|ensemblbacteria:DVU_2427(gene)|entrezgene/locuslink:2794368(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:3Iz/fHOOUSOj7o16dcKIxQEu7K0882 rogid:AAuZ05FpdYBy8r9F3WpZt/Q0NvE882 intact-crc:AE06688C947107DD|rigid:5f5Ym1VQrjGRc6c+PHPLFnD39VQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DN5 uniprotkb:Q72E05 intact:EBI-10067785|ensemblbacteria:AAS95374 intact:EBI-10066750|ensemblbacteria:AAS95254 psi-mi:aroc_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym)|uniprotkb:DVU_0894(locus name)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short) psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089486 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000453(Chorismate synthase)|interpro:IPR020541|refseq:YP_010115.1|refseq:WP_010938193.1|ensemblbacteria:AAS95374(transcript)|ensemblbacteria:DVU_0894(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR035904|entrezgene/locuslink:2794112(identity) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:iHGB7L1SbAIWU9CoIggdBpLYneU882 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 intact-crc:3896438FD65FFD26|rigid:aYYQqer7zYiexQCurmQwmciXDBg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DN5 uniprotkb:Q727T9 intact:EBI-10067785|ensemblbacteria:AAS95374 intact:EBI-10066426|ensemblbacteria:AAS97237 psi-mi:aroc_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym)|uniprotkb:DVU_0894(locus name)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short) psi-mi:q727t9_desvh(display_long)|uniprotkb:DVU_2765(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089486 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000453(Chorismate synthase)|interpro:IPR020541|refseq:YP_010115.1|refseq:WP_010938193.1|ensemblbacteria:AAS95374(transcript)|ensemblbacteria:DVU_0894(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR035904|entrezgene/locuslink:2794112(identity) interpro:IPR001279(Beta-lactamase-like)|refseq:YP_011977.1|refseq:WP_010940031.1|ensemblbacteria:AAS97237(transcript)|ensemblbacteria:DVU_2765(gene)|interpro:IPR036866|entrezgene/locuslink:2796315(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:iHGB7L1SbAIWU9CoIggdBpLYneU882 rogid:1lSzPGPfrXcrxcozEq34U5edV1U882 intact-crc:3896438FD65FFD26|rigid:aYYQqer7zYiexQCurmQwmciXDBg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E85 uniprotkb:Q725Q9 intact:EBI-10070807|ensemblbacteria:AAS95174 intact:EBI-10089615|ensemblbacteria:AAS97834 psi-mi:qrcc_desvh(display_long)|uniprotkb:qrcC(gene name)|psi-mi:qrcC(display_short)|uniprotkb:Quinone reductase complex subunit C(gene name synonym)|uniprotkb:"Type I cytochrome c3:menaquinone oxidoreductase subunit C"(gene name synonym)|uniprotkb:DVU_0693(locus name) psi-mi:fmt_desvh(display_long)|uniprotkb:fmt(gene name)|psi-mi:fmt(display_short)|uniprotkb:DVU_3365(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089612 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_009915.1|refseq:WP_010937996.1|ensemblbacteria:AAS95174(transcript)|ensemblbacteria:DVU_0693(gene)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793633(identity) interpro:IPR041711|interpro:IPR001555(Phosphoribosylglycinamide formyltransferase, active site)|interpro:IPR002376(Formyl transferase, N-terminal)|interpro:IPR005793(Formyl transferase, C-terminal)|interpro:IPR005794(Methionyl-tRNA formyltransferase)|interpro:IPR011034(Formyl transferase, C-terminal-like)|refseq:YP_012574.1|interpro:IPR044135|refseq:WP_010940620.1|ensemblbacteria:AAS97834(transcript)|ensemblbacteria:DVU_3365(gene)|go:"GO:0004479"(methionyl-tRNA formyltransferase activity)|interpro:IPR036477|entrezgene/locuslink:2795679(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:wbzNtmyZ61tQhI3yPTmIOd2kEEA882 rogid:mpl3qEAKfdzXPOAyvdaL+pyF/LI882 intact-crc:28F3F44AB4CE1E4A|rigid:PXeHUpd5BSkFQlFEZGL0pctTlGk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E85 uniprotkb:Q72CJ6 intact:EBI-10070807|ensemblbacteria:AAS95174 intact:EBI-10069519|ensemblbacteria:AAS95765 psi-mi:qrcc_desvh(display_long)|uniprotkb:qrcC(gene name)|psi-mi:qrcC(display_short)|uniprotkb:Quinone reductase complex subunit C(gene name synonym)|uniprotkb:"Type I cytochrome c3:menaquinone oxidoreductase subunit C"(gene name synonym)|uniprotkb:DVU_0693(locus name) psi-mi:q72cj6_desvh(display_long)|uniprotkb:DVU_1287(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089612 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_009915.1|refseq:WP_010937996.1|ensemblbacteria:AAS95174(transcript)|ensemblbacteria:DVU_0693(gene)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793633(identity) interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR017896|interpro:IPR017900|refseq:YP_010506.1|refseq:WP_010938583.1|ensemblbacteria:AAS95765(transcript)|ensemblbacteria:DVU_1287(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794740(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.18" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:wbzNtmyZ61tQhI3yPTmIOd2kEEA882 rogid:XlDLnTxBygAuN9i6MSdRVm1tjzw882 intact-crc:28F3F44AB4CE1E4A|rigid:PXeHUpd5BSkFQlFEZGL0pctTlGk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72E03 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10070593|ensemblbacteria:AAS95256 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089574 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 intact-crc:3D20D067CB8AFF06|rigid:+9sXkWvHWWA41uUJihQ/5LsaDng false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72E01 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10089570|ensemblbacteria:AAS95258 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:atpd_desvh(display_long)|uniprotkb:atpH(gene name)|psi-mi:atpH(display_short)|uniprotkb:"ATP synthase F(1) sector subunit delta"(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:DVU_0778(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089574 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR020781|interpro:IPR026015|refseq:YP_009999.1|refseq:WP_010938079.1|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|ensemblbacteria:AAS95258(transcript)|ensemblbacteria:DVU_0778(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|entrezgene/locuslink:2794763(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.21" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:APC9KRGIwvOyavhDbY/gm+447W0882 intact-crc:3D20D067CB8AFF06|rigid:+9sXkWvHWWA41uUJihQ/5LsaDng false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72CV9 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10069539|ensemblbacteria:AAS95652 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:q72cv9_desvh(display_long)|uniprotkb:DVU_1174(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089574 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) refseq:YP_010393.1|refseq:WP_010938471.1|ensemblbacteria:AAS95652(transcript)|ensemblbacteria:DVU_1174(gene)|entrezgene/locuslink:2794862(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.13" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:JL3SRCfBJ6KSDGjOjAGdWL1L5OQ882 intact-crc:3D20D067CB8AFF06|rigid:+9sXkWvHWWA41uUJihQ/5LsaDng false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72ET7 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10088864|ensemblbacteria:AAS94964 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:hldd_desvh(display_long)|uniprotkb:ADP-L-glycero-beta-D-manno-heptose-6-epimerase(gene name synonym)|uniprotkb:rfaD(gene name synonym)|uniprotkb:DVU_0481(locus name)|uniprotkb:hldD(gene name)|psi-mi:hldD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089574 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR001509(NAD-dependent epimerase/dehydratase)|interpro:IPR011912(ADP-L-glycero-D-manno-heptose-6-epimerase)|refseq:YP_009705.1|refseq:WP_010937788.1|ensemblbacteria:AAS94964(transcript)|ensemblbacteria:DVU_0481(gene)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0008712"(ADP-glyceromanno-heptose 6-epimerase activity)|go:"GO:0050661"(NADP binding)|go:"GO:0097171"(ADP-L-glycero-beta-D-manno-heptose biosynthetic process)|interpro:IPR036291|entrezgene/locuslink:2793626(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:TdR8z2mnPoKJjDChsvz0tsJ/USw882 intact-crc:3D20D067CB8AFF06|rigid:+9sXkWvHWWA41uUJihQ/5LsaDng false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E03 uniprotkb:Q72EL2 intact:EBI-10070593|ensemblbacteria:AAS95256 intact:EBI-10071170|ensemblbacteria:AAS95047 psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:q72el2_desvh(display_long)|uniprotkb:DVU_0566(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089553 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) interpro:IPR003018(GAF)|interpro:IPR029016|refseq:YP_009788.1|refseq:WP_010937870.1|ensemblbacteria:AAS95047(transcript)|ensemblbacteria:DVU_0566(gene)|entrezgene/locuslink:2795891(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 rogid:QaAbABuSDEybh5AJcGp1IaqU5/8882 intact-crc:305F59C075BF2E56|rigid:ZvJ+tELDNYc12Q7oj4j98phOfwQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E03 uniprotkb:Q72EB5 intact:EBI-10070593|ensemblbacteria:AAS95256 intact:EBI-10089549|ensemblbacteria:AAS95144 psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:q72eb5_desvh(display_long)|uniprotkb:cysK(gene name)|psi-mi:cysK(display_short)|uniprotkb:DVU_0663(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089553 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) interpro:IPR001216(Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site)|interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR005856(Cysteine synthase K/M)|interpro:IPR005859(Cysteine synthase A)|refseq:WP_010937966.1|refseq:YP_009885.1|ensemblbacteria:AAS95144(transcript)|ensemblbacteria:DVU_0663(gene)|go:"GO:0004124"(cysteine synthase activity)|go:"GO:0006535"(cysteine biosynthetic process from serine)|interpro:IPR036052|entrezgene/locuslink:2793602(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 rogid:9q1f/v85pdu//RCxN9LYoRcaPPE882 intact-crc:305F59C075BF2E56|rigid:ZvJ+tELDNYc12Q7oj4j98phOfwQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AE2 uniprotkb:Q72EB7 intact:EBI-10067762|ensemblbacteria:AAS96528 intact:EBI-10089692|ensemblbacteria:AAS95142 psi-mi:q72ae2_desvh(display_long)|uniprotkb:metG(gene name)|psi-mi:metG(display_short)|uniprotkb:Methionyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2055(locus name) psi-mi:q72eb7_desvh(display_long)|uniprotkb:DVU_0661(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089689 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041872|interpro:IPR033911|interpro:IPR002547(tRNA-binding region)|interpro:IPR004495(Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR014758(Methionyl-tRNA synthetase, class Ia, N-terminal)|interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|interpro:IPR023457|refseq:WP_010939333.1|refseq:YP_011268.1|interpro:IPR032678|ensemblbacteria:AAS96528(transcript)|ensemblbacteria:DVU_2055(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004825"(methionine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006431"(methionyl-tRNA aminoacylation)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2796479(identity) interpro:IPR001269(Dihydrouridine synthase, DuS)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR018517|refseq:WP_010937964.1|refseq:YP_009883.1|ensemblbacteria:AAS95142(transcript)|ensemblbacteria:DVU_0661(gene)|go:"GO:0017150"(tRNA dihydrouridine synthase activity)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR035587|entrezgene/locuslink:2793600(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.09" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:h1kUEOwSshrNiJpCu6I400O/Ay0882 rogid:p6jCV1ek1CVx8r7+82uGnklLzyo882 intact-crc:807CA35CD612B3CB|rigid:QfefgfYZbgVGQuj8EeQGtxXXIyE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BN1 uniprotkb:Q72EB4 intact:EBI-10089673|ensemblbacteria:AAS96082 intact:EBI-10067158|ensemblbacteria:AAS95145 psi-mi:q72bn1_desvh(display_long)|uniprotkb:DVU_1604(locus name) psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089676 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010823.1|ensemblbacteria:AAS96082(transcript)|ensemblbacteria:DVU_1604(gene)|entrezgene/locuslink:2795959(identity) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793603(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.21" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:BDpPPTyUasnQC9PINcCYL3SjX4w882 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 intact-crc:F9ECE2D6C511D09E|rigid:vIEGRt6FxWIatlAP+o3ywUiNJQ0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EB3 uniprotkb:Q72ED2 intact:EBI-10070871|ensemblbacteria:AAS95146 intact:EBI-10089652|ensemblbacteria:AAS95127 psi-mi:q72eb3_desvh(display_long)|uniprotkb:DVU_0665(locus name) psi-mi:q72ed2_desvh(display_long)|uniprotkb:cobI(gene name)|psi-mi:cobI(display_short)|uniprotkb:DVU_0646(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089649 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041854|interpro:IPR034904|interpro:IPR001075(NIF system FeS cluster assembly, NifU, C-terminal)|interpro:IPR002871(NIF system FeS cluster assembly, NifU, N-terminal)|interpro:IPR007419(BFD-like [2Fe-2S]-binding region)|interpro:IPR010238(NIF system FeS cluster assembly, NifU)|interpro:IPR016217(Nitrogen fixation, NifU)|refseq:YP_009887.1|refseq:WP_010937968.1|ensemblbacteria:AAS95146(transcript)|ensemblbacteria:DVU_0665(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009399"(nitrogen fixation)|go:"GO:0016226"(iron-sulfur cluster assembly)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793604(identity) interpro:IPR014776(Tetrapyrrole methylase, subdomain 2)|interpro:IPR000878(Tetrapyrrole methylase)|interpro:IPR006364("Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core")|interpro:IPR012382("Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase")|interpro:IPR014777(Tetrapyrrole methylase, subdomain 1)|refseq:YP_009868.1|refseq:WP_010937949.1|ensemblbacteria:AAS95127(transcript)|ensemblbacteria:DVU_0646(gene)|go:"GO:0009236"(cobalamin biosynthetic process)|go:"GO:0030788"(precorrin-2 C20-methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR035996|entrezgene/locuslink:2794338(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.16" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:CxKzcSdGmA+3Xsei74XQM2yBE2E882 rogid:cg+/1GIBBm3N1g9ou0cFshSfjsw882 intact-crc:2D14F842A741EFFB|rigid:FCDzz85E7d4/LcdSsQqgWe3DXRg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EB3 uniprotkb:Q72EV6 intact:EBI-10070871|ensemblbacteria:AAS95146 intact:EBI-10089656|ensemblbacteria:AAS94945 psi-mi:q72eb3_desvh(display_long)|uniprotkb:DVU_0665(locus name) psi-mi:q72ev6_desvh(display_long)|uniprotkb:Chorismate mutase(gene name synonym)|uniprotkb:Chorismate mutase-prephenate dehydratase(gene name synonym)|uniprotkb:Prephenate dehydratase(gene name synonym)|uniprotkb:p-protein(gene name synonym)|uniprotkb:DVU_0462(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089649 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041854|interpro:IPR034904|interpro:IPR001075(NIF system FeS cluster assembly, NifU, C-terminal)|interpro:IPR002871(NIF system FeS cluster assembly, NifU, N-terminal)|interpro:IPR007419(BFD-like [2Fe-2S]-binding region)|interpro:IPR010238(NIF system FeS cluster assembly, NifU)|interpro:IPR016217(Nitrogen fixation, NifU)|refseq:YP_009887.1|refseq:WP_010937968.1|ensemblbacteria:AAS95146(transcript)|ensemblbacteria:DVU_0665(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009399"(nitrogen fixation)|go:"GO:0016226"(iron-sulfur cluster assembly)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793604(identity) interpro:IPR001086(Prephenate dehydratase)|interpro:IPR002701(Chorismate mutase)|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR008242(Bifunctional chorismate mutase/prephenate dehydratase P-protein)|refseq:YP_009686.1|refseq:WP_010937769.1|ensemblbacteria:AAS94945(transcript)|ensemblbacteria:DVU_0462(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0004664"(prephenate dehydratase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0009094"(L-phenylalanine biosynthetic process)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR036263|interpro:IPR036979|entrezgene/locuslink:2794475(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:CxKzcSdGmA+3Xsei74XQM2yBE2E882 rogid:tBuoxwxPmclckWTlqumufFQC8Qs882 intact-crc:2D14F842A741EFFB|rigid:FCDzz85E7d4/LcdSsQqgWe3DXRg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EA3 uniprotkb:Q72EB3 intact:EBI-10089633|ensemblbacteria:AAS95156 intact:EBI-10070871|ensemblbacteria:AAS95146 psi-mi:q72ea3_desvh(display_long)|uniprotkb:DVU_0675(locus name) psi-mi:q72eb3_desvh(display_long)|uniprotkb:DVU_0665(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089636 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001320(Ionotropic glutamate receptor)|interpro:IPR001638(Bacterial extracellular solute-binding protein, family 3)|interpro:IPR018313|refseq:YP_009897.1|refseq:WP_010937978.1|ensemblbacteria:AAS95156(transcript)|ensemblbacteria:DVU_0675(gene)|go:"GO:0015276"(ligand-gated ion channel activity)|go:"GO:0016020"(membrane)|entrezgene/locuslink:2794167(identity) interpro:IPR041854|interpro:IPR034904|interpro:IPR001075(NIF system FeS cluster assembly, NifU, C-terminal)|interpro:IPR002871(NIF system FeS cluster assembly, NifU, N-terminal)|interpro:IPR007419(BFD-like [2Fe-2S]-binding region)|interpro:IPR010238(NIF system FeS cluster assembly, NifU)|interpro:IPR016217(Nitrogen fixation, NifU)|refseq:YP_009887.1|refseq:WP_010937968.1|ensemblbacteria:AAS95146(transcript)|ensemblbacteria:DVU_0665(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009399"(nitrogen fixation)|go:"GO:0016226"(iron-sulfur cluster assembly)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793604(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.18" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:2AV63y6aJBtSxLIuqpIu0osVf7g882 rogid:CxKzcSdGmA+3Xsei74XQM2yBE2E882 intact-crc:87ABDCE00A6E75AA|rigid:yioRmWJwQbyngIf7RKyOI8HqUgg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EJ1 uniprotkb:Q72DI4 intact:EBI-10071089 intact:EBI-10089754|ensemblbacteria:AAS95425 psi-mi:q72ej1_desvh(display_long)|uniprotkb:DVU_0587(locus name)|uniprotkb:fdnG-1(gene name)|psi-mi:fdnG-1(display_short) psi-mi:q72di4_desvh(display_long)|uniprotkb:DVU_0945(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089757 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937890.1|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR006443(Formate dehydrogenase, alpha subunit, anaerobic)|interpro:IPR006655(Molybdopterin oxidoreductase, prokaryotic, conserved site)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR019546|interpro:IPR027467|refseq:YP_009809.1|go:"GO:0009055"(electron transfer activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0045333"(cellular respiration)|go:"GO:0046872"(metal ion binding)|go:"GO:0047111"("formate dehydrogenase (cytochrome-c-553) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0008863"("formate dehydrogenase (NAD+) activity")|rcsb pdb:6SDR|rcsb pdb:6SDV|entrezgene/locuslink:2794164(identity) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR013656(PAS fold-4)|interpro:IPR021796|refseq:YP_010166.1|refseq:WP_010938244.1|ensemblbacteria:AAS95425(transcript)|ensemblbacteria:DVU_0945(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|interpro:IPR036097|interpro:IPR036890|entrezgene/locuslink:2794589(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:md8B41DmU2Tvm8hzCcUpawmBIqQ882 rogid:1/cK7NfeR/CEV66HRfZAvwD0xOM882 intact-crc:14CC1BCD7A35E4A3 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EJ1 intact:EBI-10089752 intact:EBI-10071089 intact:EBI-10053348 psi-mi:q72ej1_desvh(display_long)|uniprotkb:DVU_0587(locus name)|uniprotkb:fdnG-1(gene name)|psi-mi:fdnG-1(display_short) psi-mi:ebi10053348(display_short)|psi-mi:EBI-10089752(display_long) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089757 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937890.1|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR006443(Formate dehydrogenase, alpha subunit, anaerobic)|interpro:IPR006655(Molybdopterin oxidoreductase, prokaryotic, conserved site)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR019546|interpro:IPR027467|refseq:YP_009809.1|go:"GO:0009055"(electron transfer activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0045333"(cellular respiration)|go:"GO:0046872"(metal ion binding)|go:"GO:0047111"("formate dehydrogenase (cytochrome-c-553) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0008863"("formate dehydrogenase (NAD+) activity")|rcsb pdb:6SDR|rcsb pdb:6SDV|entrezgene/locuslink:2794164(identity) - psi-mi:"MI:0469"(intact) comment: no-uniprot-update:|caution:The sequence has been withdrawn from uniprot.|comment:"Author predicted score: 0.19" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:md8B41DmU2Tvm8hzCcUpawmBIqQ882 - intact-crc:14CC1BCD7A35E4A3 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AE2 uniprotkb:Q72EF0 intact:EBI-10067762|ensemblbacteria:AAS96528 intact:EBI-10089735|ensemblbacteria:AAS95109 psi-mi:q72ae2_desvh(display_long)|uniprotkb:metG(gene name)|psi-mi:metG(display_short)|uniprotkb:Methionyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2055(locus name) psi-mi:q72ef0_desvh(display_long)|uniprotkb:Branched-chain carboxylic acid kinase(gene name synonym)|uniprotkb:DVU_0628(locus name)|uniprotkb:buk(gene name)|psi-mi:buk(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089739 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041872|interpro:IPR033911|interpro:IPR002547(tRNA-binding region)|interpro:IPR004495(Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR014758(Methionyl-tRNA synthetase, class Ia, N-terminal)|interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|interpro:IPR023457|refseq:WP_010939333.1|refseq:YP_011268.1|interpro:IPR032678|ensemblbacteria:AAS96528(transcript)|ensemblbacteria:DVU_2055(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004825"(methionine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006431"(methionyl-tRNA aminoacylation)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2796479(identity) interpro:IPR000890(Acetate and butyrate kinase)|interpro:IPR011245(Butyrate kinase)|interpro:IPR023865|refseq:YP_009850.1|refseq:WP_010937931.1|ensemblbacteria:AAS95109(transcript)|ensemblbacteria:DVU_0628(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0047761"(butyrate kinase activity)|interpro:IPR043129|entrezgene/locuslink:2794550(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.02" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:h1kUEOwSshrNiJpCu6I400O/Ay0882 rogid:+sNl095+vsCAA5sgaPXRDoOZ0mE882 intact-crc:5E2D24E3D95A2809|rigid:ZUT0o5csIC4azwcPj9tzwEYpdlw false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ED2 uniprotkb:Q72DQ6 intact:EBI-10089652|ensemblbacteria:AAS95127 intact:EBI-10089708|ensemblbacteria:AAS95353 psi-mi:q72ed2_desvh(display_long)|uniprotkb:cobI(gene name)|psi-mi:cobI(display_short)|uniprotkb:DVU_0646(locus name) psi-mi:efts_desvh(display_long)|uniprotkb:DVU_0873(locus name)|uniprotkb:tsf(gene name)|psi-mi:tsf(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089705 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014776(Tetrapyrrole methylase, subdomain 2)|interpro:IPR000878(Tetrapyrrole methylase)|interpro:IPR006364("Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core")|interpro:IPR012382("Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase")|interpro:IPR014777(Tetrapyrrole methylase, subdomain 1)|refseq:YP_009868.1|refseq:WP_010937949.1|ensemblbacteria:AAS95127(transcript)|ensemblbacteria:DVU_0646(gene)|go:"GO:0009236"(cobalamin biosynthetic process)|go:"GO:0030788"(precorrin-2 C20-methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR035996|entrezgene/locuslink:2794338(identity) interpro:IPR001816(Translation elongation factor EFTs/EF1B)|interpro:IPR009060(UBA-like)|interpro:IPR014039(Translation elongation factor EFTs/EF1B, dimerisation)|interpro:IPR018101|refseq:YP_010094.1|refseq:WP_010938172.1|ensemblbacteria:AAS95353(transcript)|ensemblbacteria:DVU_0873(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036402|entrezgene/locuslink:2795172(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:cg+/1GIBBm3N1g9ou0cFshSfjsw882 rogid:Tie/iQR38odopnxnAA7OFDzElCg882 intact-crc:87828D510234ECBF|rigid:4IuVKmc1BS6ntliH/DXDG2hPZc8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EK7 uniprotkb:Q72EU8 intact:EBI-10089809|ensemblbacteria:AAS95052 intact:EBI-10071392|ensemblbacteria:AAS94953 psi-mi:q72ek7_desvh(display_long)|uniprotkb:DVU_0571(locus name)|uniprotkb:ald(gene name)|psi-mi:ald(display_short) psi-mi:q72eu8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0470(locus name)|uniprotkb:trpB-2(gene name)|psi-mi:trpB-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089806 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007698(Alanine dehydrogenase/PNT, C-terminal)|interpro:IPR007886(Alanine dehydrogenase/PNT, N-terminal)|interpro:IPR008141(Alanine dehydrogenase and pyridine nucleotide transhydrogenase)|interpro:IPR008143(Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2)|refseq:WP_010937875.1|refseq:YP_009793.1|ensemblbacteria:AAS95052(transcript)|ensemblbacteria:DVU_0571(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0000286"(alanine dehydrogenase activity)|go:"GO:0042853"(L-alanine catabolic process)|interpro:IPR036291|entrezgene/locuslink:2793416(identity) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009694.1|refseq:WP_010937777.1|ensemblbacteria:AAS94953(transcript)|ensemblbacteria:DVU_0470(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052|entrezgene/locuslink:2793611(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:kIcIiXLX+03ONgIuctqAn7iZWtk882 rogid:g/enmCvxQAXl3YhQAd4uEJWnxY0882 intact-crc:B0C6957D55BD8231|rigid:Cj8Kpuk8IhgO1NFG5IaSX3wC7h0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EK0 uniprotkb:Q72EK1 intact:EBI-10070186|ensemblbacteria:AAS95059 intact:EBI-10089789|ensemblbacteria:AAS95058 psi-mi:q72ek0_desvh(display_long)|uniprotkb:DVU_0578(locus name) psi-mi:q72ek1_desvh(display_long)|uniprotkb:DVU_0577(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089786 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003786(Formate dehydrogenase, subunit FdhD)|interpro:IPR016193(Cytidine deaminase-like)|refseq:YP_009800.1|refseq:WP_010937881.1|ensemblbacteria:AAS95059(transcript)|ensemblbacteria:DVU_0578(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0016783"(sulfurtransferase activity)|entrezgene/locuslink:2794563(identity) interpro:IPR006452(Formate dehydrogenase accessory protein)|interpro:IPR024064|refseq:YP_009799.1|refseq:WP_010937880.1|ensemblbacteria:AAS95058(transcript)|ensemblbacteria:DVU_0577(gene)|go:"GO:0005737"(cytoplasm)|entrezgene/locuslink:2794562(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:NyP55ZqUj1gFp7z6GJToFx+u/XI882 rogid:nmtKlMxE5DAUT8p9XDUpjuTJHOI882 intact-crc:580D4474370AD6B1|rigid:qwWtCIhLbyZB0L7PdErchMbTol8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EK0 uniprotkb:Q72CV9 intact:EBI-10070186|ensemblbacteria:AAS95059 intact:EBI-10069539|ensemblbacteria:AAS95652 psi-mi:q72ek0_desvh(display_long)|uniprotkb:DVU_0578(locus name) psi-mi:q72cv9_desvh(display_long)|uniprotkb:DVU_1174(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089786 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003786(Formate dehydrogenase, subunit FdhD)|interpro:IPR016193(Cytidine deaminase-like)|refseq:YP_009800.1|refseq:WP_010937881.1|ensemblbacteria:AAS95059(transcript)|ensemblbacteria:DVU_0578(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0016783"(sulfurtransferase activity)|entrezgene/locuslink:2794563(identity) refseq:YP_010393.1|refseq:WP_010938471.1|ensemblbacteria:AAS95652(transcript)|ensemblbacteria:DVU_1174(gene)|entrezgene/locuslink:2794862(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:NyP55ZqUj1gFp7z6GJToFx+u/XI882 rogid:JL3SRCfBJ6KSDGjOjAGdWL1L5OQ882 intact-crc:580D4474370AD6B1|rigid:qwWtCIhLbyZB0L7PdErchMbTol8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X2 uniprotkb:Q72EM5 intact:EBI-10067430|ensemblbacteria:AAS96698 intact:EBI-10089883|ensemblbacteria:AAS95034 psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:q72em5_desvh(display_long)|uniprotkb:DVU_0552(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089886 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) interpro:IPR001173(Glycosyl transferase, family 2)|interpro:IPR029044|refseq:YP_009775.1|refseq:WP_010937858.1|ensemblbacteria:AAS95034(transcript)|ensemblbacteria:DVU_0552(gene)|entrezgene/locuslink:2794435(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.04" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 rogid:uiw1hI+Mc3kJwhaTJwiRWNd7cpY882 intact-crc:1750F332611F4160|rigid:1vMXXjYWY206BAUXcSVw+NZJqbQ false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EL3 uniprotkb:Q72D86 intact:EBI-10089849|ensemblbacteria:AAS95046 intact:EBI-10089853|ensemblbacteria:AAS95523 psi-mi:q72el3_desvh(display_long)|uniprotkb:DVU_0565(locus name)|uniprotkb:gap-1(gene name)|psi-mi:gap-1(display_short) psi-mi:guaa_desvh(display_long)|uniprotkb:GMP synthetase(gene name synonym)|uniprotkb:Glutamine amidotransferase(gene name synonym)|uniprotkb:DVU_1043(locus name)|uniprotkb:guaA(gene name)|psi-mi:guaA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089857 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:YP_009787.1|refseq:WP_010937869.1|ensemblbacteria:AAS95046(transcript)|ensemblbacteria:DVU_0565(gene)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0016620"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR036291|entrezgene/locuslink:2795890(identity) interpro:IPR022310|interpro:IPR001674(GMP synthase, C-terminal)|interpro:IPR004739(GMP synthase, N-terminal)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR017926|interpro:IPR022955|interpro:IPR025777|interpro:IPR029062|refseq:YP_010264.1|refseq:WP_010938342.1|ensemblbacteria:AAS95523(transcript)|ensemblbacteria:DVU_1043(gene)|go:"GO:0003922"("GMP synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0016462"(pyrophosphatase activity)|entrezgene/locuslink:2795264(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.17" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:IQ+7gx0rO5Gf/nZeBlFeP6tf91Y882 rogid:X3/RckqU2py4hBDbXDehupdXnzs882 intact-crc:26BF059809B00E2D|rigid:dJFAoocolOTg3oNZ4DOZiKnQuq8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EL2 uniprotkb:Q72BF0 intact:EBI-10071170|ensemblbacteria:AAS95047 intact:EBI-10069353|ensemblbacteria:AAS96163 psi-mi:q72el2_desvh(display_long)|uniprotkb:DVU_0566(locus name) psi-mi:q72bf0_desvh(display_long)|uniprotkb:DVU_1686(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089836 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003018(GAF)|interpro:IPR029016|refseq:YP_009788.1|refseq:WP_010937870.1|ensemblbacteria:AAS95047(transcript)|ensemblbacteria:DVU_0566(gene)|entrezgene/locuslink:2795891(identity) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR008824(DNA helicase, Holliday junction RuvB type, N-terminal)|interpro:IPR008921(DNA polymerase III clamp loader subunit, C-terminal)|interpro:IPR021886|interpro:IPR027417|refseq:YP_010904.1|interpro:IPR032423|refseq:WP_010938975.1|ensemblbacteria:AAS96163(transcript)|ensemblbacteria:DVU_1686(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003677"(DNA binding)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0009378"(four-way junction helicase activity)|entrezgene/locuslink:2794914(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:QaAbABuSDEybh5AJcGp1IaqU5/8882 rogid:Ztr2GDn8VxuIRhLODA0jfi/vW3Q882 intact-crc:882C854D7AD9833B|rigid:3oB0qt5tVII7miIRuRDt5+JmH0k false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q1 uniprotkb:Q72ES3 intact:EBI-10087343|ensemblbacteria:AAS96772 intact:EBI-10089940|ensemblbacteria:AAS94978 psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:q72es3_desvh(display_long)|uniprotkb:DVU_0496(locus name)|uniprotkb:polA(gene name)|psi-mi:polA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089945 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) interpro:IPR001098(DNA-directed DNA polymerase, family A)|interpro:IPR002298(DNA polymerase A)|interpro:IPR002421(5'-3' exonuclease)|interpro:IPR008918(Helix-hairpin-helix motif, class 2)|interpro:IPR019760|interpro:IPR020045|interpro:IPR020046|interpro:IPR029060|refseq:YP_009719.1|refseq:WP_010937802.1|ensemblbacteria:AAS94978(transcript)|ensemblbacteria:DVU_0496(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0006261"(DNA-dependent DNA replication)|interpro:IPR036279|interpro:IPR036397|interpro:IPR043502|entrezgene/locuslink:2794724(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.08" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 rogid:gYHXXPnraOsLMDj0rlZrBrEGB5M882 intact-crc:928F55F94BC8FA25|rigid:iyMgAO3SbCQ+lchve7Arpz1MKCo false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EL3 uniprotkb:Q72EP4 intact:EBI-10089849|ensemblbacteria:AAS95046 intact:EBI-10071215|ensemblbacteria:AAS95007 psi-mi:q72el3_desvh(display_long)|uniprotkb:DVU_0565(locus name)|uniprotkb:gap-1(gene name)|psi-mi:gap-1(display_short) psi-mi:q72ep4_desvh(display_long)|uniprotkb:DVU_0525(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089927 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:YP_009787.1|refseq:WP_010937869.1|ensemblbacteria:AAS95046(transcript)|ensemblbacteria:DVU_0565(gene)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0016620"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR036291|entrezgene/locuslink:2795890(identity) interpro:IPR000835(Bacterial regulatory protein, MarR)|interpro:IPR023187|refseq:YP_009748.1|refseq:WP_010937831.1|ensemblbacteria:AAS95007(transcript)|ensemblbacteria:DVU_0525(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2794891(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.13" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:IQ+7gx0rO5Gf/nZeBlFeP6tf91Y882 rogid:8SRchu38uyxQn6nzyVy9t8rWJpU882 intact-crc:5C910DC29790EDAC|rigid:0eNeW593Xt0WzSLklAxRyOOFI48 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EM7 uniprotkb:Q72C29 intact:EBI-10089899|ensemblbacteria:AAS95032 intact:EBI-10065571|ensemblbacteria:AAS95933 psi-mi:q72em7_desvh(display_long)|uniprotkb:DVU_0550(locus name) psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089902 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR032823|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_009773.1|refseq:WP_010937856.1|ensemblbacteria:AAS95032(transcript)|ensemblbacteria:DVU_0550(gene)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2794433(identity) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:ameOXiL5e7CKWN0Q2yyIjbSquFQ882 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 intact-crc:EE9B00939A6B960A|rigid:WD3f2ojCZXZnU8DaRYy4HaIG3W8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EM7 uniprotkb:Q729E7 intact:EBI-10089899|ensemblbacteria:AAS95032 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q72em7_desvh(display_long)|uniprotkb:DVU_0550(locus name) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089902 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR032823|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_009773.1|refseq:WP_010937856.1|ensemblbacteria:AAS95032(transcript)|ensemblbacteria:DVU_0550(gene)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2794433(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794489(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:ameOXiL5e7CKWN0Q2yyIjbSquFQ882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:EE9B00939A6B960A|rigid:WD3f2ojCZXZnU8DaRYy4HaIG3W8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EM7 uniprotkb:Q729Q1 intact:EBI-10089899|ensemblbacteria:AAS95032 intact:EBI-10087343|ensemblbacteria:AAS96772 psi-mi:q72em7_desvh(display_long)|uniprotkb:DVU_0550(locus name) psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089902 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR032823|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_009773.1|refseq:WP_010937856.1|ensemblbacteria:AAS95032(transcript)|ensemblbacteria:DVU_0550(gene)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2794433(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:ameOXiL5e7CKWN0Q2yyIjbSquFQ882 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 intact-crc:EE9B00939A6B960A|rigid:WD3f2ojCZXZnU8DaRYy4HaIG3W8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EM7 uniprotkb:Q72EL2 intact:EBI-10089899|ensemblbacteria:AAS95032 intact:EBI-10071170|ensemblbacteria:AAS95047 psi-mi:q72em7_desvh(display_long)|uniprotkb:DVU_0550(locus name) psi-mi:q72el2_desvh(display_long)|uniprotkb:DVU_0566(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089902 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR032823|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_009773.1|refseq:WP_010937856.1|ensemblbacteria:AAS95032(transcript)|ensemblbacteria:DVU_0550(gene)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2794433(identity) interpro:IPR003018(GAF)|interpro:IPR029016|refseq:YP_009788.1|refseq:WP_010937870.1|ensemblbacteria:AAS95047(transcript)|ensemblbacteria:DVU_0566(gene)|entrezgene/locuslink:2795891(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:ameOXiL5e7CKWN0Q2yyIjbSquFQ882 rogid:QaAbABuSDEybh5AJcGp1IaqU5/8882 intact-crc:EE9B00939A6B960A|rigid:WD3f2ojCZXZnU8DaRYy4HaIG3W8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV8 uniprotkb:Q72AS3 intact:EBI-10071329|ensemblbacteria:AAS94943 intact:EBI-9012330 psi-mi:q72ev8_desvh(display_long)|uniprotkb:DVU_0460(locus name)|uniprotkb:aroA'(gene name)|psi-mi:aroA'(display_short) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090010 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041720|interpro:IPR002915(Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR010210(Predicted phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009684.1|refseq:WP_010937767.1|ensemblbacteria:AAS94943(transcript)|ensemblbacteria:DVU_0460(gene)|go:"GO:0004332"(fructose-bisphosphate aldolase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016744"(transketolase or transaldolase activity)|go:"GO:0016836"(hydro-lyase activity)|entrezgene/locuslink:2794473(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:jMWmDYStvbIlwq4hmTwf4dNv1ps882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:408638BBC3D7754C|rigid:1Vu5fsjOQsHYgJ7+I68qCoCMUy0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ET7 uniprotkb:Q72E06 intact:EBI-10088864|ensemblbacteria:AAS94964 intact:EBI-10070062|ensemblbacteria:AAS95253 psi-mi:hldd_desvh(display_long)|uniprotkb:ADP-L-glycero-beta-D-manno-heptose-6-epimerase(gene name synonym)|uniprotkb:rfaD(gene name synonym)|uniprotkb:DVU_0481(locus name)|uniprotkb:hldD(gene name)|psi-mi:hldD(display_short) psi-mi:q72e06_desvh(display_long)|uniprotkb:DVU_0773(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089997 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001509(NAD-dependent epimerase/dehydratase)|interpro:IPR011912(ADP-L-glycero-D-manno-heptose-6-epimerase)|refseq:YP_009705.1|refseq:WP_010937788.1|ensemblbacteria:AAS94964(transcript)|ensemblbacteria:DVU_0481(gene)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0008712"(ADP-glyceromanno-heptose 6-epimerase activity)|go:"GO:0050661"(NADP binding)|go:"GO:0097171"(ADP-L-glycero-beta-D-manno-heptose biosynthetic process)|interpro:IPR036291|entrezgene/locuslink:2793626(identity) refseq:YP_009994.1|refseq:WP_010938074.1|ensemblbacteria:AAS95253(transcript)|ensemblbacteria:DVU_0773(gene)|entrezgene/locuslink:2794844(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:TdR8z2mnPoKJjDChsvz0tsJ/USw882 rogid:y1plPfPiBP7J3U4ggIn3AeXvmuI882 intact-crc:ED05B3250676D7CC|rigid:27bvogZHlSkAzTSbJ7URfLpdnfc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ES6 uniprotkb:Q726B7 intact:EBI-10071066|ensemblbacteria:AAS94975 intact:EBI-10089204|ensemblbacteria:AAS97655 psi-mi:q72es6_desvh(display_long)|uniprotkb:DVU_0493(locus name) psi-mi:q726b7_desvh(display_long)|uniprotkb:roO(gene name)|psi-mi:roO(display_short)|uniprotkb:DVU_3185(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089971 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014995(Protein of unknown function DUF1844)|refseq:YP_009716.1|refseq:WP_010937799.1|ensemblbacteria:AAS94975(transcript)|ensemblbacteria:DVU_0493(gene)|entrezgene/locuslink:2793707(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR008254(Flavodoxin/nitric oxide synthase)|interpro:IPR016440(Rubredoxin-oxygen oxidoreductase)|interpro:IPR029039|refseq:YP_012395.1|refseq:WP_010940443.1|ensemblbacteria:AAS97655(transcript)|ensemblbacteria:DVU_3185(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036866|entrezgene/locuslink:2793835(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.14" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Zqao7bHispTY59fnE3VX1lv/EOA882 rogid:CNeOdvwXTJMCaulcUy+HDmdOOJY882 intact-crc:64655822BC7A8452|rigid:AfbOy+aiq0XTGq0t7ghFWNPc0t0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725K7 uniprotkb:Q72F19 intact:EBI-10088573|ensemblbacteria:AAS97657 intact:EBI-10068421|ensemblbacteria:AAS94879 psi-mi:q725k7_desvh(display_long)|uniprotkb:DVU_3187(locus name)|uniprotkb:hup-4(gene name)|psi-mi:hup-4(display_short) psi-mi:q72f19_desvh(display_long)|uniprotkb:DVU_0396(locus name)|uniprotkb:hup-1(gene name)|psi-mi:hup-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090073 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012397.1|refseq:WP_010940445.1|ensemblbacteria:AAS97657(transcript)|ensemblbacteria:DVU_3187(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793837(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_009620.1|interpro:IPR005684(Integration host factor, alpha subunit)|refseq:WP_010937703.1|ensemblbacteria:AAS94879(transcript)|ensemblbacteria:DVU_0396(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006310"(DNA recombination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006417"(regulation of translation)|entrezgene/locuslink:2796538(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.06" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:GFMaFAKOcY+Lkh0z2aFEIx8HGpc882 rogid:mNwdKUGDFbiz+xsocUEaTpv9PKs882 intact-crc:4439E7CCBE6CEB24|rigid:regTOltogNF8HAif3NiUTiHKYI4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q72C43 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10090056|ensemblbacteria:AAS95919 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:q72c43_desvh(display_long)|uniprotkb:DVU_1441(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090053 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_010660.1|interpro:IPR042187|refseq:WP_010938734.1|ensemblbacteria:AAS95919(transcript)|ensemblbacteria:DVU_1441(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|entrezgene/locuslink:2794568(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:UCl1QnRslU8qgMo3h/QmxNPhMfs882 intact-crc:85FB3C9420088D11|rigid:+EAGW0z7vzcR2V0T9QL3r+2YrNw false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q72CM6 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10066180|ensemblbacteria:AAS95735 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:q72cm6_desvh(display_long)|uniprotkb:DVU_1257(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090053 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_010476.1|refseq:WP_010938553.1|ensemblbacteria:AAS95735(transcript)|ensemblbacteria:DVU_1257(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2794603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:ruXcKfPiOxTsYJSnCzXA90m2O+o882 intact-crc:85FB3C9420088D11|rigid:+EAGW0z7vzcR2V0T9QL3r+2YrNw false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EY6 uniprotkb:Q72CQ5 intact:EBI-10071526|ensemblbacteria:AAS94915 intact:EBI-10090039|ensemblbacteria:AAS95706 psi-mi:q72ey6_desvh(display_long)|uniprotkb:DVU_0432(locus name) psi-mi:q72cq5_desvh(display_long)|uniprotkb:Thioredoxin-dependent peroxiredoxin(gene name synonym)|uniprotkb:Peroxiredoxin tpx(gene name synonym)|uniprotkb:Thioredoxin peroxidase(gene name synonym)|uniprotkb:tpx(gene name synonym)|uniprotkb:DVU_1228(locus name)|uniprotkb:tpX(gene name)|psi-mi:tpX(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090036 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006138("NADH dehydrogenase (ubiquinone), 20 kDa subunit")|refseq:YP_009656.1|refseq:WP_010937739.1|ensemblbacteria:AAS94915(transcript)|ensemblbacteria:DVU_0432(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0046872"(metal ion binding)|go:"GO:0048038"(quinone binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2794675(identity) interpro:IPR013766(Thioredoxin domain)|interpro:IPR002065(Antioxidant Tpx)|interpro:IPR013740(Redoxin)|interpro:IPR018219|refseq:YP_010447.1|refseq:WP_010938524.1|ensemblbacteria:AAS95706(transcript)|ensemblbacteria:DVU_1228(gene)|go:"GO:0008379"(thioredoxin peroxidase activity)|interpro:IPR036249|entrezgene/locuslink:2794123(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:RSEU1MZrBLdApq3lboTQqEqjOGY882 rogid:b7RvaRV26dJuYq/KtqDDmPn4nnY882 intact-crc:2B0312194E20718E|rigid:jYZeu1h8U2nrYhPc0m18d23cla0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F73 uniprotkb:Q72WH4 intact:EBI-10090155|ensemblbacteria:AAS94824 intact:EBI-10072215|ensemblbacteria:AAS94347 psi-mi:q72f73_desvh(display_long)|uniprotkb:DVU_0341(locus name) psi-mi:q72wh4_desvh(display_long)|uniprotkb:DVUA0115(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090152 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR004528(3-deoxy-D-manno-octulosonate cytidylyltransferase)|interpro:IPR029044|refseq:YP_009565.1|refseq:WP_010937648.1|ensemblbacteria:AAS94824(transcript)|ensemblbacteria:DVU_0341(gene)|go:"GO:0008690"(3-deoxy-manno-octulosonate cytidylyltransferase activity)|go:"GO:0009103"(lipopolysaccharide biosynthetic process)|entrezgene/locuslink:2796770(identity) interpro:IPR021123|refseq:YP_009155.1|refseq:WP_011176693.1|ensemblbacteria:AAS94347(transcript)|ensemblbacteria:DVUA0115(gene)|go:"GO:0015031"(protein transport)|interpro:IPR037203|entrezgene/locuslink:2781477(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.16" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:KXhj23aPE2ngXflZOkk1aC4YL80882 rogid:qaPJq/XjMX6LqSj6E7ZDX2GxFAc882 intact-crc:C198E79219A16211|rigid:Sxm4OKX8epyJMTdrFezEyQjZybw false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F73 uniprotkb:Q72WH5 intact:EBI-10090155|ensemblbacteria:AAS94824 intact:EBI-10072218|ensemblbacteria:AAS94348 psi-mi:q72f73_desvh(display_long)|uniprotkb:DVU_0341(locus name) psi-mi:q72wh5_desvh(display_long)|uniprotkb:DVUA0114(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090152 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR004528(3-deoxy-D-manno-octulosonate cytidylyltransferase)|interpro:IPR029044|refseq:YP_009565.1|refseq:WP_010937648.1|ensemblbacteria:AAS94824(transcript)|ensemblbacteria:DVU_0341(gene)|go:"GO:0008690"(3-deoxy-manno-octulosonate cytidylyltransferase activity)|go:"GO:0009103"(lipopolysaccharide biosynthetic process)|entrezgene/locuslink:2796770(identity) refseq:YP_009154.1|refseq:WP_011176692.1|ensemblbacteria:AAS94348(transcript)|ensemblbacteria:DVUA0114(gene)|entrezgene/locuslink:2781616(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:KXhj23aPE2ngXflZOkk1aC4YL80882 rogid:+0spAKjCQnAsVe55AgBEJ7Dfqe8882 intact-crc:C198E79219A16211|rigid:Sxm4OKX8epyJMTdrFezEyQjZybw false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F73 uniprotkb:P45574 intact:EBI-10090155|ensemblbacteria:AAS94824 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:q72f73_desvh(display_long)|uniprotkb:DVU_0341(locus name) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090152 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR004528(3-deoxy-D-manno-octulosonate cytidylyltransferase)|interpro:IPR029044|refseq:YP_009565.1|refseq:WP_010937648.1|ensemblbacteria:AAS94824(transcript)|ensemblbacteria:DVU_0341(gene)|go:"GO:0008690"(3-deoxy-manno-octulosonate cytidylyltransferase activity)|go:"GO:0009103"(lipopolysaccharide biosynthetic process)|entrezgene/locuslink:2796770(identity) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.01" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:KXhj23aPE2ngXflZOkk1aC4YL80882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 intact-crc:C198E79219A16211|rigid:Sxm4OKX8epyJMTdrFezEyQjZybw false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F64 uniprotkb:Q72EU8 intact:EBI-10090135|ensemblbacteria:AAS94833 intact:EBI-10071392|ensemblbacteria:AAS94953 psi-mi:q72f64_desvh(display_long)|uniprotkb:DVU_0350(locus name)|uniprotkb:spsF(gene name)|psi-mi:spsF(display_short) psi-mi:q72eu8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0470(locus name)|uniprotkb:trpB-2(gene name)|psi-mi:trpB-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090139 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR029044|refseq:YP_009574.1|refseq:WP_010937657.1|ensemblbacteria:AAS94833(transcript)|ensemblbacteria:DVU_0350(gene)|entrezgene/locuslink:2794677(identity) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009694.1|refseq:WP_010937777.1|ensemblbacteria:AAS94953(transcript)|ensemblbacteria:DVU_0470(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052|entrezgene/locuslink:2793611(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:7QgojXxB6d/j/1/U6+DFgQUHwv0882 rogid:g/enmCvxQAXl3YhQAd4uEJWnxY0882 intact-crc:344ABCB0280EFD0F|rigid:tRaKyuBc4FtJZvmE7vj8fusbNEg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F23 uniprotkb:Q729E7 intact:EBI-10090086|ensemblbacteria:AAS94875 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q72f23_desvh(display_long)|uniprotkb:DVU_0392(locus name) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090089 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_009616.1|refseq:WP_010937699.1|ensemblbacteria:AAS94875(transcript)|ensemblbacteria:DVU_0392(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794248(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794489(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:j9eVQljJip7BM9IUpRd1XREY/MA882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:B29E086042BE0BB3|rigid:4BnPzQqlI5klNkh03iGV8JP+bow false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F23 uniprotkb:Q726S3 intact:EBI-10090086|ensemblbacteria:AAS94875 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q72f23_desvh(display_long)|uniprotkb:DVU_0392(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090089 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_009616.1|refseq:WP_010937699.1|ensemblbacteria:AAS94875(transcript)|ensemblbacteria:DVU_0392(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794248(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.17" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:j9eVQljJip7BM9IUpRd1XREY/MA882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:B29E086042BE0BB3|rigid:4BnPzQqlI5klNkh03iGV8JP+bow false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F23 uniprotkb:Q72A93 intact:EBI-10090086|ensemblbacteria:AAS94875 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q72f23_desvh(display_long)|uniprotkb:DVU_0392(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090089 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_009616.1|refseq:WP_010937699.1|ensemblbacteria:AAS94875(transcript)|ensemblbacteria:DVU_0392(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794248(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:j9eVQljJip7BM9IUpRd1XREY/MA882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:B29E086042BE0BB3|rigid:4BnPzQqlI5klNkh03iGV8JP+bow false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F23 uniprotkb:Q729Q1 intact:EBI-10090086|ensemblbacteria:AAS94875 intact:EBI-10087343|ensemblbacteria:AAS96772 psi-mi:q72f23_desvh(display_long)|uniprotkb:DVU_0392(locus name) psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090089 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_009616.1|refseq:WP_010937699.1|ensemblbacteria:AAS94875(transcript)|ensemblbacteria:DVU_0392(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794248(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.05" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:j9eVQljJip7BM9IUpRd1XREY/MA882 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 intact-crc:B29E086042BE0BB3|rigid:4BnPzQqlI5klNkh03iGV8JP+bow false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F96 uniprotkb:Q72EU8 intact:EBI-10071858|ensemblbacteria:AAS94801 intact:EBI-10071392|ensemblbacteria:AAS94953 psi-mi:q72f96_desvh(display_long)|uniprotkb:DVU_0318(locus name) psi-mi:q72eu8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0470(locus name)|uniprotkb:trpB-2(gene name)|psi-mi:trpB-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090215 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|refseq:YP_009542.1|refseq:WP_010937625.1|ensemblbacteria:AAS94801(transcript)|ensemblbacteria:DVU_0318(gene)|entrezgene/locuslink:2794176(identity) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009694.1|refseq:WP_010937777.1|ensemblbacteria:AAS94953(transcript)|ensemblbacteria:DVU_0470(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052|entrezgene/locuslink:2793611(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:51Gjsgm+sTN0uG7Br7nNjX2ujKc882 rogid:g/enmCvxQAXl3YhQAd4uEJWnxY0882 intact-crc:211F17D398E3E951|rigid:GH75BolRo1ipXXuUNPY9t2l+9LE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F96 uniprotkb:Q72EL2 intact:EBI-10071858|ensemblbacteria:AAS94801 intact:EBI-10071170|ensemblbacteria:AAS95047 psi-mi:q72f96_desvh(display_long)|uniprotkb:DVU_0318(locus name) psi-mi:q72el2_desvh(display_long)|uniprotkb:DVU_0566(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090215 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|refseq:YP_009542.1|refseq:WP_010937625.1|ensemblbacteria:AAS94801(transcript)|ensemblbacteria:DVU_0318(gene)|entrezgene/locuslink:2794176(identity) interpro:IPR003018(GAF)|interpro:IPR029016|refseq:YP_009788.1|refseq:WP_010937870.1|ensemblbacteria:AAS95047(transcript)|ensemblbacteria:DVU_0566(gene)|entrezgene/locuslink:2795891(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:51Gjsgm+sTN0uG7Br7nNjX2ujKc882 rogid:QaAbABuSDEybh5AJcGp1IaqU5/8882 intact-crc:211F17D398E3E951|rigid:GH75BolRo1ipXXuUNPY9t2l+9LE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WL5 uniprotkb:Q72F92 intact:EBI-10088259|ensemblbacteria:AAS94381 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:q72wl5_desvh(display_long)|uniprotkb:DVUA0074(locus name) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090202 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000863(Sulphotransferase)|interpro:IPR027417|refseq:YP_009114.1|refseq:WP_011176652.1|ensemblbacteria:AAS94381(transcript)|ensemblbacteria:DVUA0074(gene)|go:"GO:0008146"(sulfotransferase activity)|entrezgene/locuslink:2781604(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.14" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Dshy1tNQyuHwJlQRha2z2lpU5Cc882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:0251FFFA5AC1191E|rigid:tmwxLIcD2agH/wONr3RtTJx0CBg false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F89 uniprotkb:Q72F88 intact:EBI-10068092|ensemblbacteria:AAS94808 intact:EBI-10088412|ensemblbacteria:AAS94809 psi-mi:q72f89_desvh(display_long)|uniprotkb:DVU_0325(locus name)|uniprotkb:hypD(gene name)|psi-mi:hypD(display_short) psi-mi:q72f88_desvh(display_long)|uniprotkb:DVU_0326(locus name)|uniprotkb:hypE(gene name)|psi-mi:hypE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090189 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002780(Hydrogenase formation HypD protein)|refseq:YP_009549.1|refseq:WP_010937632.1|ensemblbacteria:AAS94808(transcript)|ensemblbacteria:DVU_0325(gene)|go:"GO:0046872"(metal ion binding)|interpro:IPR042243|interpro:IPR042244|entrezgene/locuslink:2794327(identity) interpro:IPR010918(AIR synthase related protein, C-terminal)|interpro:IPR011854(Hydrogenase expression/formation protein HypE)|interpro:IPR016188(PurM, N-terminal-like)|rcsb pdb:2Z1T|rcsb pdb:2Z1U|refseq:YP_009550.1|refseq:WP_010937633.1|ensemblbacteria:AAS94809(transcript)|ensemblbacteria:DVU_0326(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036676|interpro:IPR036921|entrezgene/locuslink:2794328(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.11" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:1a0X/rE8bnCMqYTDpcVesfb+F2w882 rogid:p980NC3Iaue+21RLGV2vj+8YKAM882 intact-crc:DD2C60335B9AAD95|rigid:OyoSU8/WkMq1DCIvCfE/HkSzj/E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FH6 uniprotkb:Q72FD2 intact:EBI-10090258|ensemblbacteria:AAS94721 intact:EBI-10090251|ensemblbacteria:AAS94765 psi-mi:sys_desvh(display_long)|uniprotkb:Seryl-tRNA synthetase(gene name synonym)|uniprotkb:"Seryl-tRNA(Ser/Sec) synthetase"(gene name synonym)|uniprotkb:DVU_0237(locus name)|uniprotkb:serS(gene name)|psi-mi:serS(display_short) psi-mi:q72fd2_desvh(display_long)|uniprotkb:DVU_0282(locus name)|uniprotkb:mutY(gene name)|psi-mi:mutY(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090255 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042103|refseq:WP_010937547.1|interpro:IPR002314("Aminoacyl-tRNA synthetase, class II (G, H, P and S)")|interpro:IPR002317(Seryl-tRNA synthetase, class IIa)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR010978(tRNA-binding arm)|interpro:IPR015866(Seryl-tRNA synthetase, class IIa, N-terminal)|refseq:YP_009462.1|interpro:IPR033729|ensemblbacteria:AAS94721(transcript)|ensemblbacteria:DVU_0237(gene)|go:"GO:0004828"(serine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006434"(seryl-tRNA aminoacylation)|go:"GO:0016260"(selenocysteine biosynthetic process)|go:"GO:0097056"("selenocysteinyl-tRNA(Sec) biosynthetic process")|entrezgene/locuslink:2795009(identity) interpro:IPR029119|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR000445(Helix-hairpin-helix motif)|interpro:IPR003265(HhH-GPD)|interpro:IPR004036(Endonuclease III, conserved site-2)|interpro:IPR005760(A/G-specific adenine glycosylase MutY, bacterial form)|interpro:IPR011257(DNA glycosylase)|interpro:IPR015797(NUDIX)|interpro:IPR020084|interpro:IPR020476|interpro:IPR023170|refseq:YP_009506.1|interpro:IPR044298|refseq:WP_010937591.1|ensemblbacteria:AAS94765(transcript)|ensemblbacteria:DVU_0282(gene)|go:"GO:0000701"(purine-specific mismatch base pair DNA N-glycosylase activity)|go:"GO:0003677"(DNA binding)|go:"GO:0006284"(base-excision repair)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2796692(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.25" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:FBW+loa1bzA46i31PuqLmg46YhI882 rogid:iLH2kuFD1CiEURVTDs/RwC2Ti9c882 intact-crc:146ABFD743668D3C|rigid:ii8l7oLTZxCuz1DqhoP1uSoDL8Y false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FD1 uniprotkb:Q729Y2 intact:EBI-10090238|ensemblbacteria:AAS94766 intact:EBI-10090232|ensemblbacteria:AAS96688 psi-mi:q72fd1_desvh(display_long)|uniprotkb:DVU_0283(locus name) psi-mi:q729y2_desvh(display_long)|uniprotkb:DVU_2215(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090235 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR012336(Thioredoxin-like fold)|interpro:IPR023753|refseq:YP_009507.1|ensemblbacteria:AAS94766(transcript)|ensemblbacteria:DVU_0283(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036188|interpro:IPR036249|entrezgene/locuslink:2796693(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_011428.1|refseq:WP_010939490.1|ensemblbacteria:AAS96688(transcript)|ensemblbacteria:DVU_2215(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2795362(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.14" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:xjg9qKTg65Dv+iV0mhf/J1ax/S8882 rogid:7BtJC1L8IG9Liq+eH+epiZMJ13s882 intact-crc:35CB6502DCBCA0BE|rigid:1oLfleWDbq2QFZ5Bghgant55NGg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FP2 uniprotkb:Q72A97 intact:EBI-10090345|ensemblbacteria:AAS94655 intact:EBI-10090342|ensemblbacteria:AAS96573 psi-mi:q72fp2_desvh(display_long)|uniprotkb:DVU_0171(locus name) psi-mi:q72a97_desvh(display_long)|uniprotkb:DVU_2100(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090339 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR027619|refseq:YP_009396.1|refseq:WP_010937482.1|ensemblbacteria:AAS94655(transcript)|ensemblbacteria:DVU_0171(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2795601(identity) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_011313.1|refseq:WP_010939377.1|ensemblbacteria:AAS96573(transcript)|ensemblbacteria:DVU_2100(gene)|entrezgene/locuslink:2795476(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:BQTwUGz5yhjmBzbH7bMa8ic4oQM882 rogid:tGVslyGqzuRQay5gf8RzFeNOHAA882 intact-crc:AB095FF250E7442F|rigid:K2Fv4qh8+0h3VakLlo9MAUuCHu8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FP1 uniprotkb:Q726F7 intact:EBI-10071935|ensemblbacteria:AAS94656 intact:EBI-10090322|ensemblbacteria:AAS97621 psi-mi:q72fp1_desvh(display_long)|uniprotkb:DVU_0172(locus name) psi-mi:rimo_desvh(display_long)|uniprotkb:"Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase"(gene name synonym)|uniprotkb:Ribosome maturation factor RimO(gene name synonym)|uniprotkb:DVU_3151(locus name)|uniprotkb:rimO(gene name)|psi-mi:rimO(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090326 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_009397.1|refseq:WP_010937483.1|ensemblbacteria:AAS94656(transcript)|ensemblbacteria:DVU_0172(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795602(identity) interpro:IPR041582|interpro:IPR002792(Deoxyribonuclease/rho motif-related TRAM)|interpro:IPR005839(Protein of unknown function UPF0004)|interpro:IPR005840(Conserved hypothetical protein CHP01125)|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013848(Protein of unknown function UPF0004, N-terminal)|interpro:IPR020612|interpro:IPR023404|refseq:YP_012361.1|refseq:WP_010940409.1|ensemblbacteria:AAS97621(transcript)|ensemblbacteria:DVU_3151(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006400"(tRNA modification)|go:"GO:0018339"(peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0103039"(protein methylthiotransferase activity)|interpro:IPR038135|entrezgene/locuslink:2795856(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.25" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:6oB91/fAr4PPRje2nLQv5a1GfNE882 rogid:u5yUbWBXxMvH0c/EEFSYXXZLnmw882 intact-crc:15C2892AB445DDBC|rigid:uEg9b2aGDsrfwqx7e/0Stb2DNhU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FH3 uniprotkb:Q72C87 intact:EBI-10090301|ensemblbacteria:AAS94724 intact:EBI-10069359|ensemblbacteria:AAS95875 psi-mi:q72fh3_desvh(display_long)|uniprotkb:DVU_0240(locus name) psi-mi:q72c87_desvh(display_long)|uniprotkb:DVU_1397(locus name)|uniprotkb:bfr(gene name)|psi-mi:bfr(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090298 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR009875(Type IV pilus assembly PilZ)|refseq:YP_009465.1|ensemblbacteria:AAS94724(transcript)|ensemblbacteria:DVU_0240(gene)|go:"GO:0035438"(cyclic-di-GMP binding)|entrezgene/locuslink:2795012(identity) interpro:IPR002024(Bacterioferritin)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_010616.1|refseq:WP_010938692.1|ensemblbacteria:AAS95875(transcript)|ensemblbacteria:DVU_1397(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0006826"(iron ion transport)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|entrezgene/locuslink:2794797(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Bhvhqy9icPwH3O9XfwBOzKwo0p8882 rogid:/YEQxIIVEft2Xb4CEZccQMQlPoM882 intact-crc:8B83606676FDAD9B|rigid:0WKNA4gho5N/BHjTE3hxa3CJGfQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FH3 uniprotkb:Q726S4 intact:EBI-10090301|ensemblbacteria:AAS94724 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q72fh3_desvh(display_long)|uniprotkb:DVU_0240(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090298 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR009875(Type IV pilus assembly PilZ)|refseq:YP_009465.1|ensemblbacteria:AAS94724(transcript)|ensemblbacteria:DVU_0240(gene)|go:"GO:0035438"(cyclic-di-GMP binding)|entrezgene/locuslink:2795012(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Bhvhqy9icPwH3O9XfwBOzKwo0p8882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:8B83606676FDAD9B|rigid:0WKNA4gho5N/BHjTE3hxa3CJGfQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FH3 uniprotkb:Q72A92 intact:EBI-10090301|ensemblbacteria:AAS94724 intact:EBI-10087612|ensemblbacteria:AAS96578 psi-mi:q72fh3_desvh(display_long)|uniprotkb:DVU_0240(locus name) psi-mi:q72a92_desvh(display_long)|uniprotkb:DVU_2105(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090298 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR009875(Type IV pilus assembly PilZ)|refseq:YP_009465.1|ensemblbacteria:AAS94724(transcript)|ensemblbacteria:DVU_0240(gene)|go:"GO:0035438"(cyclic-di-GMP binding)|entrezgene/locuslink:2795012(identity) refseq:YP_011318.1|ensemblbacteria:AAS96578(transcript)|ensemblbacteria:DVU_2105(gene)|entrezgene/locuslink:2793377(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Bhvhqy9icPwH3O9XfwBOzKwo0p8882 rogid:JcyL2NcJci/cT5X6RwKQ1/Qy2rU882 intact-crc:8B83606676FDAD9B|rigid:0WKNA4gho5N/BHjTE3hxa3CJGfQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72FF0 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10071893|ensemblbacteria:AAS94747 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72ff0_desvh(display_long)|uniprotkb:DVU_0264(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090285 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_009488.1|refseq:WP_010937573.1|ensemblbacteria:AAS94747(transcript)|ensemblbacteria:DVU_0264(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795006(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.09" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:t19Ou93+B6vQ0rFvwWG5c05wJA8882 intact-crc:8F810EA5289A4E21|rigid:fT5/0kFhZ5irCFAgQL5br2Z8KCI false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q72FV8 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10072019|ensemblbacteria:AAS94589 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:q72fv8_desvh(display_long)|uniprotkb:DVU_0105(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090401 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:YP_009330.1|interpro:IPR030679|ensemblbacteria:AAS94589(transcript)|ensemblbacteria:DVU_0105(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015424"(ABC-type amino acid transporter activity)|entrezgene/locuslink:2795642(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.21" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:OEAD9nuCE9Dl1Ki4a+drQcF2Uro882 intact-crc:D1B3E1C24B254AC3|rigid:Y4SR4IDsW55Um0sNMfK2yi2NaPo false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726T1 uniprotkb:Q72FV6 intact:EBI-10069904|ensemblbacteria:AAS97496 intact:EBI-10090374|ensemblbacteria:AAS94591 psi-mi:q726t1_desvh(display_long)|uniprotkb:poR(gene name)|psi-mi:poR(display_short)|uniprotkb:Pyruvate synthase(gene name synonym)|uniprotkb:DVU_3025(locus name) psi-mi:q72fv6_desvh(display_long)|uniprotkb:DVU_0107(locus name)|uniprotkb:glnH(gene name)|psi-mi:glnH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090371 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033412|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR011895("Pyruvate:ferredoxin (flavodoxin) oxidoreductase")|interpro:IPR017896|interpro:IPR017900|interpro:IPR019456|interpro:IPR019752|interpro:IPR029061|refseq:YP_012236.1|refseq:WP_010940284.1|ensemblbacteria:AAS97496(transcript)|ensemblbacteria:DVU_3025(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0019164"(pyruvate synthase activity)|go:"GO:0022900"(electron transport chain)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037112|entrezgene/locuslink:2796442(identity) interpro:IPR001320(Ionotropic glutamate receptor)|interpro:IPR001638(Bacterial extracellular solute-binding protein, family 3)|interpro:IPR018313|refseq:YP_009332.1|interpro:IPR044132|refseq:WP_010937418.1|ensemblbacteria:AAS94591(transcript)|ensemblbacteria:DVU_0107(gene)|go:"GO:0015276"(ligand-gated ion channel activity)|go:"GO:0016020"(membrane)|entrezgene/locuslink:2795644(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.03" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:HjxGbqzD+v4RlI5kNJh2g0o5mEI882 rogid:okCuyZK8M+JZXVbU1F1RYXf+Pww882 intact-crc:653B2B2017C8851E|rigid:kceOTA6JQF7yIin/iGC5Zmzva9M false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X2 uniprotkb:Q72FR2 intact:EBI-10067430|ensemblbacteria:AAS96698 intact:EBI-10071788|ensemblbacteria:AAS94635 psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:q72fr2_desvh(display_long)|uniprotkb:DVU_0151(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090358 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_009376.1|refseq:WP_010937462.1|ensemblbacteria:AAS94635(transcript)|ensemblbacteria:DVU_0151(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2796748(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.22" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 rogid:o26b5Fqw8J22PxKv9Rw0ijZTJNo882 intact-crc:96B40962D001CB08|rigid:zE9b2uwYUIDkAmMHJIEkt94bXkY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WL4 uniprotkb:Q726S3 intact:EBI-10087623|ensemblbacteria:AAS94380 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q72wl4_desvh(display_long)|uniprotkb:DVUA0075(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090443 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009115.1|refseq:WP_011176653.1|ensemblbacteria:AAS94380(transcript)|ensemblbacteria:DVUA0075(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2781603(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:I0c4uzTTT2zTRbWP8O49+seYpIU882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:46722403182A66C0|rigid:WkPmFbnyxSrIYT2AFl6Bulxq8/w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WL4 uniprotkb:Q726S8 intact:EBI-10087623|ensemblbacteria:AAS94380 intact:EBI-10065726|ensemblbacteria:AAS97499 psi-mi:q72wl4_desvh(display_long)|uniprotkb:DVUA0075(locus name) psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090443 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009115.1|refseq:WP_011176653.1|ensemblbacteria:AAS94380(transcript)|ensemblbacteria:DVUA0075(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2781603(identity) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:I0c4uzTTT2zTRbWP8O49+seYpIU882 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 intact-crc:46722403182A66C0|rigid:WkPmFbnyxSrIYT2AFl6Bulxq8/w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WI3 uniprotkb:Q72F08 intact:EBI-10072284|ensemblbacteria:AAS94355 intact:EBI-10071275|ensemblbacteria:AAS94893 psi-mi:q72wi3_desvh(display_long)|uniprotkb:DVUA0106(locus name) psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090430 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010812(Hypersensitivity response secretion HrpJ)|interpro:IPR013351(Type III secretion system effector delivery regulator TyeA)|interpro:IPR013401(Type III secretion regulator, YopN/LcrE/InvE/MxiC)|interpro:IPR015144(TyeA)|refseq:YP_009146.1|refseq:WP_011176684.1|ensemblbacteria:AAS94355(transcript)|ensemblbacteria:DVUA0106(gene)|go:"GO:0009986"(cell surface)|go:"GO:0019867"(outer membrane)|go:"GO:0030254"(protein secretion by the type III secretion system)|go:"GO:0050709"(negative regulation of protein secretion)|interpro:IPR038347|entrezgene/locuslink:2781592(identity) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:AIS3OAkJBUHeiwmxL25TW8Zehac882 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 intact-crc:7E921D37777F8CF3|rigid:yfQeVcXMd5htcZVTCyrivOkU/8s false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72G32 uniprotkb:Q72G40 intact:EBI-10090414|ensemblbacteria:AAS94513 intact:EBI-10088036|ensemblbacteria:AAS94505 psi-mi:q72g32_desvh(display_long)|uniprotkb:DVU_0029(locus name) psi-mi:q72g40_desvh(display_long)|uniprotkb:DVU_0021(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090417 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002821(Hydantoinase/oxoprolinase)|interpro:IPR008040(Hydantoinaseoxoprolinase, N-terminal)|refseq:YP_009254.1|refseq:WP_010937340.1|ensemblbacteria:AAS94513(transcript)|ensemblbacteria:DVU_0029(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR043129|entrezgene/locuslink:2793647(identity) interpro:IPR029063|refseq:YP_009246.1|ensemblbacteria:AAS94505(transcript)|ensemblbacteria:DVU_0021(gene)|entrezgene/locuslink:2794953(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.19" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:RHu72pYwPh23D318ht51U6WMDng882 rogid:/ibU8PD6J6J9I2+F4cSkYJf6Odw882 intact-crc:14B323AE74F3B045|rigid:EEHkNKIl40kmtsNdA0aR6qt4tT4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726B8 uniprotkb:Q72WL7 intact:EBI-10090480|ensemblbacteria:AAS97651 intact:EBI-10072383|ensemblbacteria:AAS94383 psi-mi:q726b8_desvh(display_long)|uniprotkb:Formylglycinamide ribonucleotide amidotransferase subunit II(gene name synonym)|uniprotkb:Glutamine amidotransferase PurL(gene name synonym)|uniprotkb:Phosphoribosylformylglycinamidine synthase subunit II(gene name synonym)|uniprotkb:DVU_3181(locus name)|uniprotkb:purL(gene name)|psi-mi:purL(display_short) psi-mi:q72wl7_desvh(display_long)|uniprotkb:DVUA0072(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090477 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010074(Phosphoribosylformylglycinamidine synthase II)|interpro:IPR010918(AIR synthase related protein, C-terminal)|interpro:IPR016188(PurM, N-terminal-like)|ensemblbacteria:AAS97651(transcript)|ensemblbacteria:DVU_3181(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004642"(phosphoribosylformylglycinamidine synthase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006189"('de novo' IMP biosynthetic process)|interpro:IPR036676|interpro:IPR036921|interpro:IPR041609|entrezgene/locuslink:2793831(identity) interpro:IPR028098|refseq:YP_009112.1|refseq:WP_011176650.1|ensemblbacteria:AAS94383(transcript)|ensemblbacteria:DVUA0072(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2781606(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.05" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:Df0oTrLYAQ2K2fo/qa+Q3OHB9oU882 rogid:7eN0G2vCy8+J3s86wUMVb6RMfVI882 intact-crc:0EF82F14E31BEF9A|rigid:Lr0TkiB0eKnez0xzNyXYdr/2v0k false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS0 uniprotkb:Q06173 intact:EBI-6974660|ensemblbacteria:AAS96398|intact:MINT-8183946 intact:EBI-10065032|ensemblbacteria:AAS96397 psi-mi:q72as0_desvh(display_long)|uniprotkb:hynA-1(gene name)|psi-mi:hynA-1(display_short)|uniprotkb:DVU_1922(locus name) psi-mi:phns1_desvh(display_long)|uniprotkb:NiFe hydrogenlyase small chain 1(gene name synonym)|uniprotkb:hynB-1(gene name synonym)|uniprotkb:DVU_1921(locus name)|uniprotkb:hynB1(gene name)|psi-mi:hynB1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087415 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS96398(transcript)|ensemblbacteria:DVU_1922(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|refseq:YP_011139.1|interpro:IPR018194|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR029014|refseq:WP_010939208.1|entrezgene/locuslink:2793338(identity) interpro:IPR001821([Ni-Fe]-hydrogenase, small subunit)|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR019546|interpro:IPR027394|refseq:YP_011138.1|refseq:WP_010939207.1|ensemblbacteria:AAS96397(transcript)|ensemblbacteria:DVU_1921(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0009375"(ferredoxin hydrogenase complex)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0047806"(cytochrome-c3 hydrogenase activity)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037024|interpro:IPR037148|entrezgene/locuslink:2793337(identity) psi-mi:"MI:0469"(intact) comment:mint|comment:"Author predicted score: 0.07" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:9diknYXRsRHX5Dg4cFqEuG/cGFw882 rogid:3BEe8rX/dDoc5EUNj2EOk7FFMt0882 intact-crc:3CB18CC1ED34ECDC|rigid:oDycV5kzdi2s2ZlQ0tGB9RX+o0w false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE9 uniprotkb:Q725S1 intact:EBI-10087505|ensemblbacteria:AAS95812 intact:EBI-10087509|ensemblbacteria:AAS97822 psi-mi:tig_desvh(display_long)|uniprotkb:PPIase(gene name synonym)|uniprotkb:DVU_1334(locus name)|uniprotkb:tig(gene name)|psi-mi:tig(display_short) psi-mi:q725s1_desvh(display_long)|uniprotkb:DNA/pantothenate metabolism flavoprotein(gene name synonym)|uniprotkb:coaBC(gene name)|psi-mi:coaBC(display_short)|uniprotkb:Phosphopantothenoylcysteine synthetase/decarboxylase(gene name synonym)|uniprotkb:DVU_3353(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087534 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005215(Trigger factor)|interpro:IPR008880(Trigger factor, C-terminal, bacterial)|interpro:IPR008881(Trigger factor, ribosome-binding, bacterial)|interpro:IPR027304|refseq:WP_010938629.1|refseq:YP_010553.1|ensemblbacteria:AAS95812(transcript)|ensemblbacteria:DVU_1334(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0007049"(cell cycle)|go:"GO:0015031"(protein transport)|go:"GO:0051301"(cell division)|interpro:IPR036611|interpro:IPR037041|entrezgene/locuslink:2794582(identity) interpro:IPR003382(Flavoprotein)|interpro:IPR005252(Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase)|interpro:IPR007085(DNA/pantothenate metabolism flavoprotein, C-terminal)|refseq:YP_012562.1|refseq:WP_010940609.1|ensemblbacteria:AAS97822(transcript)|ensemblbacteria:DVU_3353(gene)|go:"GO:0004632"(phosphopantothenate--cysteine ligase activity)|go:"GO:0004633"(phosphopantothenoylcysteine decarboxylase activity)|go:"GO:0010181"(FMN binding)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0015941"(pantothenate catabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR035929|interpro:IPR036551|entrezgene/locuslink:2795667(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.17" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:0DsKo13lsPnHvMMeGub4YeC18nI882 rogid:U1admFKiD9B/Pmgbvxckmb3AjoI882 intact-crc:364DC869D8DE9769|rigid:mqBQKuw09qBaVTEofDLmrREeXNQ false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CV4 uniprotkb:Q726S3 intact:EBI-10065903|ensemblbacteria:AAS95657 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q72cv4_desvh(display_long)|uniprotkb:DVU_1179(locus name)|uniprotkb:aor(gene name)|psi-mi:aor(display_short) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087672 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|refseq:YP_010398.1|refseq:WP_010938476.1|ensemblbacteria:AAS95657(transcript)|ensemblbacteria:DVU_1179(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2796664(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.19" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid://UHaftptjuUgn+rNqOh5dzqgdY882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:81C60736ED96D35F|rigid:WQ+9YI/YsqEXs+VUgPu3QbYP7iU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S7 uniprotkb:Q729Q1 intact:EBI-10087705|ensemblbacteria:AAS97500 intact:EBI-10087343|ensemblbacteria:AAS96772 psi-mi:pta_desvh(display_long)|uniprotkb:Phosphotransacetylase(gene name synonym)|uniprotkb:DVU_3029(locus name)|uniprotkb:pta(gene name)|psi-mi:pta(display_short) psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087726 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042112|interpro:IPR042113|interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR004614(Phosphate acetyltransferase)|interpro:IPR010766(DRTGG)|interpro:IPR016475(Phosphate acetyltransferase, bacteria)|interpro:IPR027417|interpro:IPR028979|refseq:YP_012240.1|refseq:WP_010940288.1|ensemblbacteria:AAS97500(transcript)|ensemblbacteria:DVU_3029(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006085"(acetyl-CoA biosynthetic process)|go:"GO:0008959"(phosphate acetyltransferase activity)|entrezgene/locuslink:2796446(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.06" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:M0XYPsqslSPJ4v3xp2CUfwXMxuA882 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 intact-crc:4BC00A5D53A2DD3C|rigid:WjmwuseyKjUv5kpoJZH1JZsU+8w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S7 uniprotkb:Q72DN8 intact:EBI-10087705|ensemblbacteria:AAS97500 intact:EBI-10087709|ensemblbacteria:AAS95371 psi-mi:pta_desvh(display_long)|uniprotkb:Phosphotransacetylase(gene name synonym)|uniprotkb:DVU_3029(locus name)|uniprotkb:pta(gene name)|psi-mi:pta(display_short) psi-mi:q72dn8_desvh(display_long)|uniprotkb:DVU_0891(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087726 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042112|interpro:IPR042113|interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR004614(Phosphate acetyltransferase)|interpro:IPR010766(DRTGG)|interpro:IPR016475(Phosphate acetyltransferase, bacteria)|interpro:IPR027417|interpro:IPR028979|refseq:YP_012240.1|refseq:WP_010940288.1|ensemblbacteria:AAS97500(transcript)|ensemblbacteria:DVU_3029(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006085"(acetyl-CoA biosynthetic process)|go:"GO:0008959"(phosphate acetyltransferase activity)|entrezgene/locuslink:2796446(identity) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_010112.1|refseq:WP_010938190.1|ensemblbacteria:AAS95371(transcript)|ensemblbacteria:DVU_0891(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794203(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:M0XYPsqslSPJ4v3xp2CUfwXMxuA882 rogid:w2S2MRSGsipunb/zk1q0Qm1ZDDs882 intact-crc:4BC00A5D53A2DD3C|rigid:WjmwuseyKjUv5kpoJZH1JZsU+8w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C7 uniprotkb:Q72B50 intact:EBI-10066295|ensemblbacteria:AAS97400 intact:EBI-10067283|ensemblbacteria:AAS96265 psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:q72b50_desvh(display_long)|uniprotkb:Sigma-70(gene name synonym)|uniprotkb:DVU_1788(locus name)|uniprotkb:rpoD(gene name)|psi-mi:rpoD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087831 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007127(RNA polymerase sigma factor 70, region 1.1)|interpro:IPR007624(RNA polymerase sigma-70 region 3)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR009042(RNA polymerase sigma-70 region 1.2)|interpro:IPR012760(RNA polymerase sigma factor RpoD, C-terminal)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|interpro:IPR028630|refseq:YP_011006.1|refseq:WP_010939076.1|ensemblbacteria:AAS96265(transcript)|ensemblbacteria:DVU_1788(gene)|go:"GO:0001123"|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016987"(sigma factor activity)|interpro:IPR036388|interpro:IPR042189|entrezgene/locuslink:2793314(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 rogid:uXlgHdylMF0gkzY6Dq/5S1/2Dzw882 intact-crc:9B98DD2205E07691|rigid:iMDRvatqY6O8TE9LfFUkOocXR0Q false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U9 uniprotkb:Q728Q5 intact:EBI-10087893|ensemblbacteria:AAS97227 intact:EBI-10087889|ensemblbacteria:AAS97020 psi-mi:q727u9_desvh(display_long)|uniprotkb:mqnD(gene name)|psi-mi:mqnD(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnD(gene name synonym)|uniprotkb:DVU_2755(locus name) psi-mi:azor_desvh(display_long)|uniprotkb:FMN-dependent NADH-azoreductase(gene name synonym)|uniprotkb:DVU_2548(locus name)|uniprotkb:Azo-dye reductase(gene name synonym)|uniprotkb:FMN-dependent NADH-azo compound oxidoreductase(gene name synonym)|uniprotkb:azoR(gene name)|psi-mi:azoR(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087910 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940021.1|interpro:IPR003773(Protein of unknown function DUF178)|refseq:YP_011967.1|interpro:IPR030869|ensemblbacteria:AAS97227(transcript)|ensemblbacteria:DVU_2755(gene)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016830"(carbon-carbon lyase activity)|entrezgene/locuslink:2794028(identity) interpro:IPR003680(Flavodoxin-like fold)|interpro:IPR023048|interpro:IPR029039|refseq:YP_011760.1|refseq:WP_010939818.1|ensemblbacteria:AAS97020(transcript)|ensemblbacteria:DVU_2548(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0016652"("oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor")|go:"GO:0016655"("oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor")|entrezgene/locuslink:2796122(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:kFqJ2mbgXpPd0BLli12nl7X4A1I882 rogid:+IwnxVTAKqc9hwKuHx1s7Jocepc882 intact-crc:72814FC13784C38D|rigid:2lt/sz7oFBsk2T1CD2Gsrqz1MQc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U9 uniprotkb:Q729C4 intact:EBI-10087893|ensemblbacteria:AAS97227 intact:EBI-10067155|ensemblbacteria:AAS96900 psi-mi:q727u9_desvh(display_long)|uniprotkb:mqnD(gene name)|psi-mi:mqnD(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnD(gene name synonym)|uniprotkb:DVU_2755(locus name) psi-mi:q729c4_desvh(display_long)|uniprotkb:DVU_2427(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10087910 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940021.1|interpro:IPR003773(Protein of unknown function DUF178)|refseq:YP_011967.1|interpro:IPR030869|ensemblbacteria:AAS97227(transcript)|ensemblbacteria:DVU_2755(gene)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016830"(carbon-carbon lyase activity)|entrezgene/locuslink:2794028(identity) refseq:YP_011640.1|ensemblbacteria:AAS96900(transcript)|ensemblbacteria:DVU_2427(gene)|entrezgene/locuslink:2794368(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.10" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:kFqJ2mbgXpPd0BLli12nl7X4A1I882 rogid:AAuZ05FpdYBy8r9F3WpZt/Q0NvE882 intact-crc:72814FC13784C38D|rigid:2lt/sz7oFBsk2T1CD2Gsrqz1MQc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728X1 uniprotkb:Q729E9 intact:EBI-10066870|ensemblbacteria:AAS96953 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q728x1_desvh(display_long)|uniprotkb:DVU_2481(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088073 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|refseq:YP_011693.1|ensemblbacteria:AAS96953(transcript)|ensemblbacteria:DVU_2481(gene)|entrezgene/locuslink:2795663(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2794487(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:Xai4sfPBlGz5FuIUd3QRPDMEtyk882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:9C2B0FB69FA25173|rigid:1Ivc2pG+Au9Af/PBJ1yT355KU0I false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F0 uniprotkb:Q72AT3 intact:EBI-10065740|ensemblbacteria:AAS96874 intact:EBI-10068534|ensemblbacteria:AAS96383 psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:q72at3_desvh(display_long)|uniprotkb:DVU_1907(locus name)|uniprotkb:ugd(gene name)|psi-mi:ugd(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088455 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028357|refseq:YP_011124.1|refseq:WP_010939193.1|ensemblbacteria:AAS96383(transcript)|ensemblbacteria:DVU_1907(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0003979"(UDP-glucose 6-dehydrogenase activity)|go:"GO:0006065"(UDP-glucuronate biosynthetic process)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291|entrezgene/locuslink:2793680(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.05" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 rogid:DlaZgne2xG/LcOH7et/EfWEYUd0882 intact-crc:BC8B097262D841AB|rigid:A65MnacoLv32jk9Mk+dop9jzxq8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q727C7 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088493 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:92190286FE853079|rigid:j0arDAsYeDrnsFEtPDixyEwc28c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q729X2 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10067430|ensemblbacteria:AAS96698 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088493 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 intact-crc:92190286FE853079|rigid:j0arDAsYeDrnsFEtPDixyEwc28c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q72CF4 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088493 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:92190286FE853079|rigid:j0arDAsYeDrnsFEtPDixyEwc28c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q726Q1 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10069830|ensemblbacteria:AAS97526 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:q726q1_desvh(display_long)|uniprotkb:DVU_3055(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088493 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR003029(S1, RNA binding)|interpro:IPR004659(Ribonuclease E and G)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019307|interpro:IPR022967|refseq:WP_010940314.1|refseq:YP_012266.1|ensemblbacteria:AAS97526(transcript)|ensemblbacteria:DVU_3055(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004540"(ribonuclease activity)|go:"GO:0006396"(RNA processing)|entrezgene/locuslink:2796081(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.10" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:0DukenNB/4I6W/6xr1RMTApK4ro882 intact-crc:92190286FE853079|rigid:j0arDAsYeDrnsFEtPDixyEwc28c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AW7 uniprotkb:Q72C29 intact:EBI-10068407|ensemblbacteria:AAS96349 intact:EBI-10065571|ensemblbacteria:AAS95933 psi-mi:q72aw7_desvh(display_long)|uniprotkb:DVU_1873(locus name)|uniprotkb:ppiB-2(gene name)|psi-mi:ppiB-2(display_short) psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088556 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_011792177.1|interpro:IPR002130(Peptidyl-prolyl cis-trans isomerase, cyclophilin-type)|interpro:IPR020892|interpro:IPR029000|interpro:IPR024936|ensemblbacteria:AAS96349(transcript)|ensemblbacteria:DVU_1873(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0006457"(protein folding)|interpro:IPR044665|entrezgene/locuslink:2794317(identity) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.15" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:HH/qD05hqrEqtKpMr6tovuyIeY0882 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 intact-crc:8B8354A321860A6F|rigid:m+6yXdMV8QSQ72K3EEXkwQQtjfU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AW7 uniprotkb:Q726E7 intact:EBI-10068407|ensemblbacteria:AAS96349 intact:EBI-10065191|ensemblbacteria:AAS97676 psi-mi:q72aw7_desvh(display_long)|uniprotkb:DVU_1873(locus name)|uniprotkb:ppiB-2(gene name)|psi-mi:ppiB-2(display_short) psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088556 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_011792177.1|interpro:IPR002130(Peptidyl-prolyl cis-trans isomerase, cyclophilin-type)|interpro:IPR020892|interpro:IPR029000|interpro:IPR024936|ensemblbacteria:AAS96349(transcript)|ensemblbacteria:DVU_1873(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0006457"(protein folding)|interpro:IPR044665|entrezgene/locuslink:2794317(identity) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.07" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:HH/qD05hqrEqtKpMr6tovuyIeY0882 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 intact-crc:8B8354A321860A6F|rigid:m+6yXdMV8QSQ72K3EEXkwQQtjfU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728G0 uniprotkb:Q72BD3 intact:EBI-10066697|ensemblbacteria:AAS97115 intact:EBI-10088678|ensemblbacteria:AAS96180 psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:q72bd3_desvh(display_long)|uniprotkb:DVU_1703(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088696 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) interpro:IPR004473(Restriction endonuclease, type I, EcoRI, R subunit)|interpro:IPR007409(Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N terminus)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|refseq:YP_010921.1|refseq:WP_010938992.1|ensemblbacteria:AAS96180(transcript)|ensemblbacteria:DVU_1703(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0009035"(type I site-specific deoxyribonuclease activity)|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR040980|entrezgene/locuslink:2795785(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.13" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 rogid:YPlACy2jlN8UnBjE69M7lRB8gtM882 intact-crc:561D2C64B9335B64|rigid:047veXa+StPuAjKjO+0Zv9txjo0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DN5 uniprotkb:Q72BT5 intact:EBI-10067785|ensemblbacteria:AAS95374 intact:EBI-10088807|ensemblbacteria:AAS96027 psi-mi:aroc_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym)|uniprotkb:DVU_0894(locus name)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short) psi-mi:q72bt5_desvh(display_long)|uniprotkb:DVU_1549(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088820 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000453(Chorismate synthase)|interpro:IPR020541|refseq:YP_010115.1|refseq:WP_010938193.1|ensemblbacteria:AAS95374(transcript)|ensemblbacteria:DVU_0894(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR035904|entrezgene/locuslink:2794112(identity) interpro:IPR029063|refseq:YP_010768.1|refseq:WP_010938841.1|ensemblbacteria:AAS96027(transcript)|ensemblbacteria:DVU_1549(gene)|interpro:IPR041698|entrezgene/locuslink:2794865(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.12" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:iHGB7L1SbAIWU9CoIggdBpLYneU882 rogid:hbl5bdzj+gQKDRmmLlpkxUkQTQs882 intact-crc:FCDD35DC9B0F98ED|rigid:PYgXdA/zv4pl/nlhNDxetVMQKc8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q727C6 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065699|ensemblbacteria:AAS97401 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088934 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 intact-crc:48BAA1DBA0BB8BD8|rigid:NCEAWs/UlSWcf5i1sgeTq1Nnl9E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q727C7 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088934 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.15" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:48BAA1DBA0BB8BD8|rigid:NCEAWs/UlSWcf5i1sgeTq1Nnl9E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q72A93 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10088934 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.14" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:48BAA1DBA0BB8BD8|rigid:NCEAWs/UlSWcf5i1sgeTq1Nnl9E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB3 uniprotkb:Q72E04 intact:EBI-10089049|ensemblbacteria:AAS95848 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:q72cb3_desvh(display_long)|uniprotkb:DVU_1370(locus name) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089090 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010589.1|refseq:WP_010938665.1|ensemblbacteria:AAS95848(transcript)|ensemblbacteria:DVU_1370(gene)|entrezgene/locuslink:2793503(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121|entrezgene/locuslink:2794846(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:7iBEKOmEzchbgIkhL1lWMt16KtM882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 intact-crc:AD6F9A0A2AFBB680|rigid:hgEKDFejSXnD4NEVIZvpH6FT7Pg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CD9 uniprotkb:Q726S3 intact:EBI-10087615|ensemblbacteria:AAS95822 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:ispg_desvh(display_long)|uniprotkb:"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase"(gene name synonym)|uniprotkb:DVU_1344(locus name)|uniprotkb:ispG(gene name)|psi-mi:ispG(display_short) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089129 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004588(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type)|interpro:IPR011005(Dihydropteroate synthase-like)|interpro:IPR016425(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial)|refseq:YP_010563.1|ensemblbacteria:AAS95822(transcript)|ensemblbacteria:DVU_1344(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046429"(4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795143(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:caynhpgg6DreuOCdNYjsh6v10RU882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:07735D711BC23A6E|rigid:rTLtWmAPlzwcvzmS3Wa1gRsBsOg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D85 uniprotkb:Q72A93 intact:EBI-10064794|ensemblbacteria:AAS95524 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089332 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:8D28A66A48E19631|rigid:0cMoV/W9wzCgBxC7B/Eo7qZog2M false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA8 uniprotkb:Q72D99 intact:EBI-10067870|ensemblbacteria:AAS95501 intact:EBI-10088905|ensemblbacteria:AAS95510 psi-mi:q72da8_desvh(display_long)|uniprotkb:DVU_1021(locus name) psi-mi:q72d99_desvh(display_long)|uniprotkb:DVU_1030(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089366 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000825(SUF system FeS cluster assembly, SufBD)|refseq:YP_010242.1|refseq:WP_010938320.1|ensemblbacteria:AAS95501(transcript)|ensemblbacteria:DVU_1021(gene)|go:"GO:0016226"(iron-sulfur cluster assembly)|interpro:IPR037284|entrezgene/locuslink:2793744(identity) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_010251.1|refseq:WP_010938329.1|ensemblbacteria:AAS95510(transcript)|ensemblbacteria:DVU_1030(gene)|go:"GO:0005737"(cytoplasm)|entrezgene/locuslink:2794527(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.08" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:fpheqrH7wLrgIp+jXGiRXV9K8yY882 rogid:p8fTyHL7x5SUBE3eKzKKJupCYac882 intact-crc:B3580E3F94CFC2EE|rigid:iBYYC46XkFz8SrhSauwrndxy5I8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DG5 uniprotkb:Q72C12 intact:EBI-10089436|ensemblbacteria:AAS95444 intact:EBI-10068160|ensemblbacteria:AAS95950 psi-mi:q72dg5_desvh(display_long)|uniprotkb:DVU_0964(locus name) psi-mi:q72c12_desvh(display_long)|uniprotkb:DVU_1472(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089457 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006096(Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal)|interpro:IPR028971|refseq:YP_010185.1|refseq:WP_010938263.1|ensemblbacteria:AAS95444(transcript)|ensemblbacteria:DVU_0964(gene)|go:"GO:0004352"("glutamate dehydrogenase (NAD+) activity")|go:"GO:0019551"(glutamate catabolic process to 2-oxoglutarate)|interpro:IPR036291|entrezgene/locuslink:2794467(identity) refseq:WP_011792370.1|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|ensemblbacteria:AAS95950(transcript)|ensemblbacteria:DVU_1472(gene)|interpro:IPR041699|entrezgene/locuslink:2794141(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:riAGR25CPsQiWwV2m3kwDU52mSw882 rogid:HXduubtYgFDudVqnqaHL/EtV2nE882 intact-crc:D6FAE2BF0BD706AD|rigid:ZcyoDhnsU7RoklL9nv+NuCrzk+8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E03 uniprotkb:Q72E05 intact:EBI-10070593|ensemblbacteria:AAS95256 intact:EBI-10066750|ensemblbacteria:AAS95254 psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089599 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.20" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 intact-crc:B7AF83B87876A533|rigid:GGR2IX7DgX0XvZMmYRWyx8zNOGY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ED2 uniprotkb:Q72DQ6 intact:EBI-10089652|ensemblbacteria:AAS95127 intact:EBI-10089708|ensemblbacteria:AAS95353 psi-mi:q72ed2_desvh(display_long)|uniprotkb:cobI(gene name)|psi-mi:cobI(display_short)|uniprotkb:DVU_0646(locus name) psi-mi:efts_desvh(display_long)|uniprotkb:DVU_0873(locus name)|uniprotkb:tsf(gene name)|psi-mi:tsf(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089722 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014776(Tetrapyrrole methylase, subdomain 2)|interpro:IPR000878(Tetrapyrrole methylase)|interpro:IPR006364("Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core")|interpro:IPR012382("Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase")|interpro:IPR014777(Tetrapyrrole methylase, subdomain 1)|refseq:YP_009868.1|refseq:WP_010937949.1|ensemblbacteria:AAS95127(transcript)|ensemblbacteria:DVU_0646(gene)|go:"GO:0009236"(cobalamin biosynthetic process)|go:"GO:0030788"(precorrin-2 C20-methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR035996|entrezgene/locuslink:2794338(identity) interpro:IPR001816(Translation elongation factor EFTs/EF1B)|interpro:IPR009060(UBA-like)|interpro:IPR014039(Translation elongation factor EFTs/EF1B, dimerisation)|interpro:IPR018101|refseq:YP_010094.1|refseq:WP_010938172.1|ensemblbacteria:AAS95353(transcript)|ensemblbacteria:DVU_0873(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036402|entrezgene/locuslink:2795172(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.02" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:cg+/1GIBBm3N1g9ou0cFshSfjsw882 rogid:Tie/iQR38odopnxnAA7OFDzElCg882 intact-crc:276F3A5E8C47904A|rigid:4IuVKmc1BS6ntliH/DXDG2hPZc8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EJ1 uniprotkb:Q72DI4 intact:EBI-10071089 intact:EBI-10089754|ensemblbacteria:AAS95425 psi-mi:q72ej1_desvh(display_long)|uniprotkb:DVU_0587(locus name)|uniprotkb:fdnG-1(gene name)|psi-mi:fdnG-1(display_short) psi-mi:q72di4_desvh(display_long)|uniprotkb:DVU_0945(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089773 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937890.1|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR006443(Formate dehydrogenase, alpha subunit, anaerobic)|interpro:IPR006655(Molybdopterin oxidoreductase, prokaryotic, conserved site)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR019546|interpro:IPR027467|refseq:YP_009809.1|go:"GO:0009055"(electron transfer activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0045333"(cellular respiration)|go:"GO:0046872"(metal ion binding)|go:"GO:0047111"("formate dehydrogenase (cytochrome-c-553) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0008863"("formate dehydrogenase (NAD+) activity")|rcsb pdb:6SDR|rcsb pdb:6SDV|entrezgene/locuslink:2794164(identity) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR013656(PAS fold-4)|interpro:IPR021796|refseq:YP_010166.1|refseq:WP_010938244.1|ensemblbacteria:AAS95425(transcript)|ensemblbacteria:DVU_0945(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|interpro:IPR036097|interpro:IPR036890|entrezgene/locuslink:2794589(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:md8B41DmU2Tvm8hzCcUpawmBIqQ882 rogid:1/cK7NfeR/CEV66HRfZAvwD0xOM882 intact-crc:34C6FF2687706CCC|rigid:rcRIIufvWkoyO4X7WNCgqJYqm64 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EK7 uniprotkb:Q72EU8 intact:EBI-10089809|ensemblbacteria:AAS95052 intact:EBI-10071392|ensemblbacteria:AAS94953 psi-mi:q72ek7_desvh(display_long)|uniprotkb:DVU_0571(locus name)|uniprotkb:ald(gene name)|psi-mi:ald(display_short) psi-mi:q72eu8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0470(locus name)|uniprotkb:trpB-2(gene name)|psi-mi:trpB-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089823 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007698(Alanine dehydrogenase/PNT, C-terminal)|interpro:IPR007886(Alanine dehydrogenase/PNT, N-terminal)|interpro:IPR008141(Alanine dehydrogenase and pyridine nucleotide transhydrogenase)|interpro:IPR008143(Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2)|refseq:WP_010937875.1|refseq:YP_009793.1|ensemblbacteria:AAS95052(transcript)|ensemblbacteria:DVU_0571(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0000286"(alanine dehydrogenase activity)|go:"GO:0042853"(L-alanine catabolic process)|interpro:IPR036291|entrezgene/locuslink:2793416(identity) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009694.1|refseq:WP_010937777.1|ensemblbacteria:AAS94953(transcript)|ensemblbacteria:DVU_0470(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052|entrezgene/locuslink:2793611(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.20" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:kIcIiXLX+03ONgIuctqAn7iZWtk882 rogid:g/enmCvxQAXl3YhQAd4uEJWnxY0882 intact-crc:B895D1635DFAB0A1|rigid:Cj8Kpuk8IhgO1NFG5IaSX3wC7h0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EL3 uniprotkb:Q72D86 intact:EBI-10089849|ensemblbacteria:AAS95046 intact:EBI-10089853|ensemblbacteria:AAS95523 psi-mi:q72el3_desvh(display_long)|uniprotkb:DVU_0565(locus name)|uniprotkb:gap-1(gene name)|psi-mi:gap-1(display_short) psi-mi:guaa_desvh(display_long)|uniprotkb:GMP synthetase(gene name synonym)|uniprotkb:Glutamine amidotransferase(gene name synonym)|uniprotkb:DVU_1043(locus name)|uniprotkb:guaA(gene name)|psi-mi:guaA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089870 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:YP_009787.1|refseq:WP_010937869.1|ensemblbacteria:AAS95046(transcript)|ensemblbacteria:DVU_0565(gene)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0016620"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR036291|entrezgene/locuslink:2795890(identity) interpro:IPR022310|interpro:IPR001674(GMP synthase, C-terminal)|interpro:IPR004739(GMP synthase, N-terminal)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR017926|interpro:IPR022955|interpro:IPR025777|interpro:IPR029062|refseq:YP_010264.1|refseq:WP_010938342.1|ensemblbacteria:AAS95523(transcript)|ensemblbacteria:DVU_1043(gene)|go:"GO:0003922"("GMP synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0016462"(pyrophosphatase activity)|entrezgene/locuslink:2795264(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.17" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:IQ+7gx0rO5Gf/nZeBlFeP6tf91Y882 rogid:X3/RckqU2py4hBDbXDehupdXnzs882 intact-crc:FC132A8E9E8CAA2A|rigid:dJFAoocolOTg3oNZ4DOZiKnQuq8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ES3 uniprotkb:Q729Q1 intact:EBI-10089940|ensemblbacteria:AAS94978 intact:EBI-10087343|ensemblbacteria:AAS96772 psi-mi:q72es3_desvh(display_long)|uniprotkb:DVU_0496(locus name)|uniprotkb:polA(gene name)|psi-mi:polA(display_short) psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089958 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001098(DNA-directed DNA polymerase, family A)|interpro:IPR002298(DNA polymerase A)|interpro:IPR002421(5'-3' exonuclease)|interpro:IPR008918(Helix-hairpin-helix motif, class 2)|interpro:IPR019760|interpro:IPR020045|interpro:IPR020046|interpro:IPR029060|refseq:YP_009719.1|refseq:WP_010937802.1|ensemblbacteria:AAS94978(transcript)|ensemblbacteria:DVU_0496(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0006261"(DNA-dependent DNA replication)|interpro:IPR036279|interpro:IPR036397|interpro:IPR043502|entrezgene/locuslink:2794724(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.08" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:gYHXXPnraOsLMDj0rlZrBrEGB5M882 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 intact-crc:E191B1DBE2427051|rigid:iyMgAO3SbCQ+lchve7Arpz1MKCo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ES6 uniprotkb:Q726B7 intact:EBI-10071066|ensemblbacteria:AAS94975 intact:EBI-10089204|ensemblbacteria:AAS97655 psi-mi:q72es6_desvh(display_long)|uniprotkb:DVU_0493(locus name) psi-mi:q726b7_desvh(display_long)|uniprotkb:roO(gene name)|psi-mi:roO(display_short)|uniprotkb:DVU_3185(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10089984 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014995(Protein of unknown function DUF1844)|refseq:YP_009716.1|refseq:WP_010937799.1|ensemblbacteria:AAS94975(transcript)|ensemblbacteria:DVU_0493(gene)|entrezgene/locuslink:2793707(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR008254(Flavodoxin/nitric oxide synthase)|interpro:IPR016440(Rubredoxin-oxygen oxidoreductase)|interpro:IPR029039|refseq:YP_012395.1|refseq:WP_010940443.1|ensemblbacteria:AAS97655(transcript)|ensemblbacteria:DVU_3185(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036866|entrezgene/locuslink:2793835(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.14" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:Zqao7bHispTY59fnE3VX1lv/EOA882 rogid:CNeOdvwXTJMCaulcUy+HDmdOOJY882 intact-crc:E2B7C84A865510CE|rigid:AfbOy+aiq0XTGq0t7ghFWNPc0t0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV8 uniprotkb:Q72AS3 intact:EBI-10071329|ensemblbacteria:AAS94943 intact:EBI-9012330 psi-mi:q72ev8_desvh(display_long)|uniprotkb:DVU_0460(locus name)|uniprotkb:aroA'(gene name)|psi-mi:aroA'(display_short) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090023 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041720|interpro:IPR002915(Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR010210(Predicted phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009684.1|refseq:WP_010937767.1|ensemblbacteria:AAS94943(transcript)|ensemblbacteria:DVU_0460(gene)|go:"GO:0004332"(fructose-bisphosphate aldolase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016744"(transketolase or transaldolase activity)|go:"GO:0016836"(hydro-lyase activity)|entrezgene/locuslink:2794473(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.04" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:jMWmDYStvbIlwq4hmTwf4dNv1ps882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:8C52AE37C1C3C599|rigid:1Vu5fsjOQsHYgJ7+I68qCoCMUy0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F23 uniprotkb:Q72A93 intact:EBI-10090086|ensemblbacteria:AAS94875 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q72f23_desvh(display_long)|uniprotkb:DVU_0392(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090114 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_009616.1|refseq:WP_010937699.1|ensemblbacteria:AAS94875(transcript)|ensemblbacteria:DVU_0392(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794248(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:j9eVQljJip7BM9IUpRd1XREY/MA882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:52FB543C2504D731|rigid:LA+KHaSqjE8GdslQVjSN/D+NH2U false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F23 uniprotkb:Q726S3 intact:EBI-10090086|ensemblbacteria:AAS94875 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q72f23_desvh(display_long)|uniprotkb:DVU_0392(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090114 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_009616.1|refseq:WP_010937699.1|ensemblbacteria:AAS94875(transcript)|ensemblbacteria:DVU_0392(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794248(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.17" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:j9eVQljJip7BM9IUpRd1XREY/MA882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:52FB543C2504D731|rigid:LA+KHaSqjE8GdslQVjSN/D+NH2U false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F23 uniprotkb:Q729Q1 intact:EBI-10090086|ensemblbacteria:AAS94875 intact:EBI-10087343|ensemblbacteria:AAS96772 psi-mi:q72f23_desvh(display_long)|uniprotkb:DVU_0392(locus name) psi-mi:q729q1_desvh(display_long)|uniprotkb:DVU_2299(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090114 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004838(Aminotransferases, class-I, pyridoxal-phosphate-binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_009616.1|refseq:WP_010937699.1|ensemblbacteria:AAS94875(transcript)|ensemblbacteria:DVU_0392(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794248(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR005892(Glycine betaine/L-proline transport ATP-binding subunit)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011512.1|refseq:WP_010939574.1|ensemblbacteria:AAS96772(transcript)|ensemblbacteria:DVU_2299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016020"(membrane)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2795345(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.05" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2017/02/06 rogid:j9eVQljJip7BM9IUpRd1XREY/MA882 rogid:/bHcF+JlbfWAnONyiB+2TMyhXgg882 intact-crc:52FB543C2504D731|rigid:LA+KHaSqjE8GdslQVjSN/D+NH2U false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F73 uniprotkb:P45574 intact:EBI-10090155|ensemblbacteria:AAS94824 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:q72f73_desvh(display_long)|uniprotkb:DVU_0341(locus name) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090176 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR004528(3-deoxy-D-manno-octulosonate cytidylyltransferase)|interpro:IPR029044|refseq:YP_009565.1|refseq:WP_010937648.1|ensemblbacteria:AAS94824(transcript)|ensemblbacteria:DVU_0341(gene)|go:"GO:0008690"(3-deoxy-manno-octulosonate cytidylyltransferase activity)|go:"GO:0009103"(lipopolysaccharide biosynthetic process)|entrezgene/locuslink:2796770(identity) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.01" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:KXhj23aPE2ngXflZOkk1aC4YL80882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 intact-crc:B8200AB3A30DA2D8|rigid:ElOk5bUjWDICfU1RCrJqmurqcwI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FH6 uniprotkb:Q72FD2 intact:EBI-10090258|ensemblbacteria:AAS94721 intact:EBI-10090251|ensemblbacteria:AAS94765 psi-mi:sys_desvh(display_long)|uniprotkb:Seryl-tRNA synthetase(gene name synonym)|uniprotkb:"Seryl-tRNA(Ser/Sec) synthetase"(gene name synonym)|uniprotkb:DVU_0237(locus name)|uniprotkb:serS(gene name)|psi-mi:serS(display_short) psi-mi:q72fd2_desvh(display_long)|uniprotkb:DVU_0282(locus name)|uniprotkb:mutY(gene name)|psi-mi:mutY(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090272 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042103|refseq:WP_010937547.1|interpro:IPR002314("Aminoacyl-tRNA synthetase, class II (G, H, P and S)")|interpro:IPR002317(Seryl-tRNA synthetase, class IIa)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR010978(tRNA-binding arm)|interpro:IPR015866(Seryl-tRNA synthetase, class IIa, N-terminal)|refseq:YP_009462.1|interpro:IPR033729|ensemblbacteria:AAS94721(transcript)|ensemblbacteria:DVU_0237(gene)|go:"GO:0004828"(serine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006434"(seryl-tRNA aminoacylation)|go:"GO:0016260"(selenocysteine biosynthetic process)|go:"GO:0097056"("selenocysteinyl-tRNA(Sec) biosynthetic process")|entrezgene/locuslink:2795009(identity) interpro:IPR029119|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR000445(Helix-hairpin-helix motif)|interpro:IPR003265(HhH-GPD)|interpro:IPR004036(Endonuclease III, conserved site-2)|interpro:IPR005760(A/G-specific adenine glycosylase MutY, bacterial form)|interpro:IPR011257(DNA glycosylase)|interpro:IPR015797(NUDIX)|interpro:IPR020084|interpro:IPR020476|interpro:IPR023170|refseq:YP_009506.1|interpro:IPR044298|refseq:WP_010937591.1|ensemblbacteria:AAS94765(transcript)|ensemblbacteria:DVU_0282(gene)|go:"GO:0000701"(purine-specific mismatch base pair DNA N-glycosylase activity)|go:"GO:0003677"(DNA binding)|go:"GO:0006284"(base-excision repair)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2796692(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.25" comment: figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:FBW+loa1bzA46i31PuqLmg46YhI882 rogid:iLH2kuFD1CiEURVTDs/RwC2Ti9c882 intact-crc:E4524962CF3FEF11|rigid:ii8l7oLTZxCuz1DqhoP1uSoDL8Y false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FV6 uniprotkb:Q726T1 intact:EBI-10090374|ensemblbacteria:AAS94591 intact:EBI-10069904|ensemblbacteria:AAS97496 psi-mi:q72fv6_desvh(display_long)|uniprotkb:DVU_0107(locus name)|uniprotkb:glnH(gene name)|psi-mi:glnH(display_short) psi-mi:q726t1_desvh(display_long)|uniprotkb:poR(gene name)|psi-mi:poR(display_short)|uniprotkb:Pyruvate synthase(gene name synonym)|uniprotkb:DVU_3025(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090388 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001320(Ionotropic glutamate receptor)|interpro:IPR001638(Bacterial extracellular solute-binding protein, family 3)|interpro:IPR018313|refseq:YP_009332.1|interpro:IPR044132|refseq:WP_010937418.1|ensemblbacteria:AAS94591(transcript)|ensemblbacteria:DVU_0107(gene)|go:"GO:0015276"(ligand-gated ion channel activity)|go:"GO:0016020"(membrane)|entrezgene/locuslink:2795644(identity) interpro:IPR033412|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR011895("Pyruvate:ferredoxin (flavodoxin) oxidoreductase")|interpro:IPR017896|interpro:IPR017900|interpro:IPR019456|interpro:IPR019752|interpro:IPR029061|refseq:YP_012236.1|refseq:WP_010940284.1|ensemblbacteria:AAS97496(transcript)|ensemblbacteria:DVU_3025(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0019164"(pyruvate synthase activity)|go:"GO:0022900"(electron transport chain)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037112|entrezgene/locuslink:2796442(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.03" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:okCuyZK8M+JZXVbU1F1RYXf+Pww882 rogid:HjxGbqzD+v4RlI5kNJh2g0o5mEI882 intact-crc:224E7CA1331AE552|rigid:kceOTA6JQF7yIin/iGC5Zmzva9M false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WL4 uniprotkb:Q726S3 intact:EBI-10087623|ensemblbacteria:AAS94380 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q72wl4_desvh(display_long)|uniprotkb:DVUA0075(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090460 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009115.1|refseq:WP_011176653.1|ensemblbacteria:AAS94380(transcript)|ensemblbacteria:DVUA0075(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2781603(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.24" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:I0c4uzTTT2zTRbWP8O49+seYpIU882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:44212F1877239D91|rigid:WkPmFbnyxSrIYT2AFl6Bulxq8/w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WL4 uniprotkb:Q726S8 intact:EBI-10087623|ensemblbacteria:AAS94380 intact:EBI-10065726|ensemblbacteria:AAS97499 psi-mi:q72wl4_desvh(display_long)|uniprotkb:DVUA0075(locus name) psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10090460 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009115.1|refseq:WP_011176653.1|ensemblbacteria:AAS94380(transcript)|ensemblbacteria:DVUA0075(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2781603(identity) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.09" figure legend:Dataset S7 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2015/01/15 2015/01/19 rogid:I0c4uzTTT2zTRbWP8O49+seYpIU882 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 intact-crc:44212F1877239D91|rigid:WkPmFbnyxSrIYT2AFl6Bulxq8/w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E04 uniprotkb:Q72AS3 intact:EBI-10070597|ensemblbacteria:AAS95255 intact:EBI-9012330 psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090503 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121|entrezgene/locuslink:2794846(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.26 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:CEE030DC25CA7C60|rigid:h+Q0jkGwKb0x2+VgOlaTtwP96M8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72E02 uniprotkb:Q729F1 intact:EBI-10070589|ensemblbacteria:AAS95257 intact:EBI-10067171|ensemblbacteria:AAS96873 psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090539 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121|entrezgene/locuslink:2794762(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.37 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 intact-crc:9F8F15453D28B06B|rigid:njgktT9zyK7ZLqmo03K3/f1gkOc false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72DZ9 uniprotkb:Q72E03 intact:EBI-10070604|ensemblbacteria:AAS95260 intact:EBI-10070593|ensemblbacteria:AAS95256 psi-mi:q72dz9_desvh(display_long)|uniprotkb:DVU_0780(locus name) psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090530 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|interpro:IPR028987|refseq:YP_010001.1|ensemblbacteria:AAS95260(transcript)|ensemblbacteria:DVU_0780(gene)|go:"GO:0015078"(proton transmembrane transporter activity)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)") interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.80 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:iawHw4iYKJBHw2AYajd2/PQMxLU882 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 intact-crc:2510BC6A15684A73|rigid:SefNerQvCjNrAGZ+YUq8eFSv+KM false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72E01 uniprotkb:Q72E03 intact:EBI-10089570|ensemblbacteria:AAS95258 intact:EBI-10070593|ensemblbacteria:AAS95256 psi-mi:atpd_desvh(display_long)|uniprotkb:atpH(gene name)|psi-mi:atpH(display_short)|uniprotkb:"ATP synthase F(1) sector subunit delta"(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:DVU_0778(locus name) psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090521 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR020781|interpro:IPR026015|refseq:YP_009999.1|refseq:WP_010938079.1|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|ensemblbacteria:AAS95258(transcript)|ensemblbacteria:DVU_0778(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)") interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.40 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:APC9KRGIwvOyavhDbY/gm+447W0882 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 intact-crc:0FF75BF6C038D517|rigid:2HpDedIWpltshaA0geQk1agcYL4 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72E00 uniprotkb:Q72DZ9 intact:EBI-10070642|ensemblbacteria:AAS95259 intact:EBI-10070604|ensemblbacteria:AAS95260 psi-mi:atpf_desvh(display_long)|uniprotkb:"ATP synthase F(0) sector subunit b"(gene name synonym)|uniprotkb:ATPase subunit I(gene name synonym)|uniprotkb:F-type ATPase subunit b(gene name synonym)|uniprotkb:DVU_0779(locus name)|uniprotkb:atpF(gene name)|psi-mi:atpF(display_short) psi-mi:q72dz9_desvh(display_long)|uniprotkb:DVU_0780(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090548 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|refseq:YP_010000.1|ensemblbacteria:AAS95259(transcript)|ensemblbacteria:DVU_0779(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|entrezgene/locuslink:2794764(identity) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|interpro:IPR028987|refseq:YP_010001.1|ensemblbacteria:AAS95260(transcript)|ensemblbacteria:DVU_0780(gene)|go:"GO:0015078"(proton transmembrane transporter activity)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)") psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.68 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:Fe7TWpt3JNFER7sbHfhmN5UkamY882 rogid:iawHw4iYKJBHw2AYajd2/PQMxLU882 intact-crc:B086BC284EE9898E|rigid:DA16HFpINAzJ8S4SD71DSXe/Ilg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72D36 uniprotkb:Q72DU3 intact:EBI-10067699|ensemblbacteria:AAS95574 intact:EBI-10069213|ensemblbacteria:AAS95316 psi-mi:arly_desvh(display_long)|uniprotkb:Arginosuccinase(gene name synonym)|uniprotkb:DVU_1094(locus name)|uniprotkb:argH(gene name)|psi-mi:argH(display_short) psi-mi:trmd_desvh(display_long)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym)|uniprotkb:DVU_0836(locus name)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090557 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000362(Fumarate lyase)|interpro:IPR008948(L-Aspartase-like)|interpro:IPR009049(Argininosuccinate lyase)|interpro:IPR020557|interpro:IPR022761|interpro:IPR024083|interpro:IPR029419|refseq:YP_010315.1|refseq:WP_010938393.1|ensemblbacteria:AAS95574(transcript)|ensemblbacteria:DVU_1094(gene)|go:"GO:0004056"(argininosuccinate lyase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0042450"(arginine biosynthetic process via ornithine) interpro:IPR023148|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR019230|interpro:IPR029026|interpro:IPR029028|refseq:YP_010057.1|refseq:WP_010938137.1|ensemblbacteria:AAS95316(transcript)|ensemblbacteria:DVU_0836(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|entrezgene/locuslink:2794848(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.59 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:0xiCHW8HKPNzkOA0ytfrjBwB2n0882 rogid:JzxZzMGyF2NhZkiUkc1jEB/A1Ck882 intact-crc:E8D6F7327CC3F66E|rigid:SwhoCjVwIf8c1GDmqnbsop9Yl/c false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q726K3 uniprotkb:Q72E04 intact:EBI-10068003|ensemblbacteria:AAS97575 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090512 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737 interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121|entrezgene/locuslink:2794846(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.26 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 intact-crc:BA335660807BFC4B|rigid:vEVssoeO75LISfb8qkXAyCpoE5Q false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72DN5 uniprotkb:Q72D45 intact:EBI-10067785|ensemblbacteria:AAS95374 intact:EBI-10069077|ensemblbacteria:AAS95565 psi-mi:aroc_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym)|uniprotkb:DVU_0894(locus name)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short) psi-mi:q72d45_desvh(display_long)|uniprotkb:DVU_1085(locus name)|uniprotkb:phoU(gene name)|psi-mi:phoU(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090606 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000453(Chorismate synthase)|interpro:IPR020541|refseq:YP_010115.1|refseq:WP_010938193.1|ensemblbacteria:AAS95374(transcript)|ensemblbacteria:DVU_0894(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR035904|entrezgene/locuslink:2794112(identity) interpro:IPR026022|interpro:IPR028366|refseq:YP_010306.1|refseq:WP_010938384.1|ensemblbacteria:AAS95565(transcript)|ensemblbacteria:DVU_1085(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.29 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:iHGB7L1SbAIWU9CoIggdBpLYneU882 rogid:8bRa7Ad8xK+IgqVObyH5pX3mm7Q882 intact-crc:5D5C4F6C9421F653|rigid:yTsJEb6Sb3ZdVZQP1K6AMGfZURg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AE2 uniprotkb:Q72DS3 intact:EBI-10067762|ensemblbacteria:AAS96528 intact:EBI-10090593|ensemblbacteria:AAS95336 psi-mi:q72ae2_desvh(display_long)|uniprotkb:metG(gene name)|psi-mi:metG(display_short)|uniprotkb:Methionyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2055(locus name) psi-mi:q72ds3_desvh(display_long)|uniprotkb:Porphobilinogen synthase(gene name synonym)|uniprotkb:DVU_0856(locus name)|uniprotkb:hemB(gene name)|psi-mi:hemB(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090597 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041872|interpro:IPR033911|interpro:IPR002547(tRNA-binding region)|interpro:IPR004495(Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR014758(Methionyl-tRNA synthetase, class Ia, N-terminal)|interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|interpro:IPR023457|refseq:WP_010939333.1|refseq:YP_011268.1|interpro:IPR032678|ensemblbacteria:AAS96528(transcript)|ensemblbacteria:DVU_2055(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004825"(methionine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006431"(methionyl-tRNA aminoacylation)|go:"GO:0046872"(metal ion binding) interpro:IPR001731(Tetrapyrrole biosynthesis, porphobilinogen synthase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_010077.1|refseq:WP_010938156.1|ensemblbacteria:AAS95336(transcript)|ensemblbacteria:DVU_0856(gene)|go:"GO:0004655"(porphobilinogen synthase activity)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2794185(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.48 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:h1kUEOwSshrNiJpCu6I400O/Ay0882 rogid:35P4mJnlMzL1NgU/GnDo/eYWMmk882 intact-crc:854EAAF9842C754B|rigid:oncdfVnZHnHdpegdfyaPB8UgIpU false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72DT0 uniprotkb:Q729E9 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090575 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.30 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:E0A4CCAF037C1198|rigid:/5RjJISt2LAiU2F90rpHB/LnO2w false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72DT1 uniprotkb:Q72DS9 intact:EBI-10068244|ensemblbacteria:AAS95328 intact:EBI-10070314|ensemblbacteria:AAS95330 psi-mi:q72dt1_desvh(display_long)|uniprotkb:DVU_0848(locus name) psi-mi:q72ds9_desvh(display_long)|uniprotkb:DVU_0850(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090566 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010069.1|refseq:WP_010938148.1|ensemblbacteria:AAS95328(transcript)|ensemblbacteria:DVU_0848(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR023753|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2795199(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_010071.1|refseq:WP_010938150.1|ensemblbacteria:AAS95330(transcript)|ensemblbacteria:DVU_0850(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036197 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.74 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:8fJEeFdsNociGk3VqQ6Jvr/Q4gs882 rogid:6mCiza3oir+Bgg4hU7lTDFS59AQ882 intact-crc:E891EAA0892F1527|rigid:8nVG58X42Wu53ev5Sn4s4edMQTw false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72DS5 uniprotkb:Q725I2 intact:EBI-10070029|ensemblbacteria:AAS95334 intact:EBI-10070032|ensemblbacteria:AAS97637 psi-mi:ahba_desvh(display_long)|uniprotkb:DVU_0854(locus name)|uniprotkb:ahbA(gene name)|psi-mi:ahbA(display_short) psi-mi:ahbb_desvh(display_long)|uniprotkb:ahbB(gene name)|psi-mi:ahbB(display_short)|uniprotkb:DVU_3167(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090584 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000485(Transcription regulator, AsnC/Lrp)|refseq:YP_010075.1|refseq:WP_010938154.1|ensemblbacteria:AAS95334(transcript)|ensemblbacteria:DVU_0854(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016829"(lyase activity)|go:"GO:0043565"(sequence-specific DNA binding)|interpro:IPR040523|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2794183(identity) interpro:IPR019888|refseq:YP_012377.1|refseq:WP_010940425.1|ensemblbacteria:AAS97637(transcript)|ensemblbacteria:DVU_3167(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016829"(lyase activity)|interpro:IPR040523|interpro:IPR036390 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.93 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:qaiFlK+73tflzG6JkOBnw818l2E882 rogid:KZz0Z88+2J4GOyInp6o0mhmhEMM882 intact-crc:BEF85232EF7F6D7F|rigid:LwvRXjIA1ZSKxziRCBYer3gjsyI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72B01 uniprotkb:Q72DA8 intact:EBI-10068511|ensemblbacteria:AAS96315 intact:EBI-10067870|ensemblbacteria:AAS95501 psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:q72da8_desvh(display_long)|uniprotkb:DVU_1021(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090624 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249 interpro:IPR000825(SUF system FeS cluster assembly, SufBD)|refseq:YP_010242.1|refseq:WP_010938320.1|ensemblbacteria:AAS95501(transcript)|ensemblbacteria:DVU_1021(gene)|go:"GO:0016226"(iron-sulfur cluster assembly)|interpro:IPR037284|entrezgene/locuslink:2793744(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.39 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 rogid:fpheqrH7wLrgIp+jXGiRXV9K8yY882 intact-crc:CC622F7C91C7BBDA|rigid:xlCHlOznf8dQph/QgcfKO8/xmJ4 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72BE4 uniprotkb:Q72DA1 intact:EBI-10068714|ensemblbacteria:AAS96169 intact:EBI-10068720|ensemblbacteria:AAS95508 psi-mi:q72be4_desvh(display_long)|uniprotkb:DVU_1692(locus name) psi-mi:kcy_desvh(display_long)|uniprotkb:Cytidine monophosphate kinase(gene name synonym)|uniprotkb:DVU_1028(locus name)|uniprotkb:cmk(gene name)|psi-mi:cmk(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090633 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010910.1|refseq:WP_010938981.1|ensemblbacteria:AAS96169(transcript)|ensemblbacteria:DVU_1692(gene) refseq:WP_010938327.1|interpro:IPR003136(Cytidylate kinase)|interpro:IPR011994(Cytidylate kinase region)|interpro:IPR027417|refseq:YP_010249.1|ensemblbacteria:AAS95508(transcript)|ensemblbacteria:DVU_1028(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006220"(pyrimidine nucleotide metabolic process)|go:"GO:0036430"(CMP kinase activity)|go:"GO:0036431"(dCMP kinase activity)|entrezgene/locuslink:2794525(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.26 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:qV7vrqWwYWiVwQ8wUhS8O2b9EBc882 rogid:ClS/sOrefmGxSmfBt++7bwK30OQ882 intact-crc:311BD5C0F4454675|rigid:3zz7E6mIQpRPvVIHer30O4XHv7w false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72CW4 uniprotkb:Q72AY3 intact:EBI-10090642|ensemblbacteria:AAS95647 intact:EBI-10090649|ensemblbacteria:AAS96333 psi-mi:q72cw4_desvh(display_long)|uniprotkb:DVU_1169(locus name) psi-mi:q72ay3_desvh(display_long)|uniprotkb:DVU_1857(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090645 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938466.1|interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|refseq:YP_010388.1|ensemblbacteria:AAS95647(transcript)|ensemblbacteria:DVU_1169(gene)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2794857(identity) interpro:IPR033479|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011074.1|refseq:WP_010939143.1|ensemblbacteria:AAS96333(transcript)|ensemblbacteria:DVU_1857(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.28 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:Hbv+dhABBjRf78c9JxkzJX5A9DI882 rogid:Q42nqmc4YSWut8zyqWjVgYZqcoE882 intact-crc:C0129EACD0AE6C3F|rigid:QWqcYs/v4wzZ3MlG7CdJ7ekSA9I false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Q4 uniprotkb:Q72CW4 intact:EBI-10090657|ensemblbacteria:AAS96768 intact:EBI-10090642|ensemblbacteria:AAS95647 psi-mi:q729q4_desvh(display_long)|uniprotkb:DVU_2295(locus name) psi-mi:q72cw4_desvh(display_long)|uniprotkb:DVU_1169(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090660 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR013656(PAS fold-4)|interpro:IPR029151|refseq:YP_011508.1|refseq:WP_010939570.1|ensemblbacteria:AAS96768(transcript)|ensemblbacteria:DVU_2295(gene)|go:"GO:0004673"(protein histidine kinase activity)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965 refseq:WP_010938466.1|interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|refseq:YP_010388.1|ensemblbacteria:AAS95647(transcript)|ensemblbacteria:DVU_1169(gene)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2794857(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.26 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:l39CDKQKabDUnGqvZd+IQ42BVPI882 rogid:Hbv+dhABBjRf78c9JxkzJX5A9DI882 intact-crc:79064DC54E055644|rigid:/HeT0DMZF0UIsZKLNWuc8HwkPPw false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72CV9 uniprotkb:Q72DE6 intact:EBI-10069539|ensemblbacteria:AAS95652 intact:EBI-10069542|ensemblbacteria:AAS95463 psi-mi:q72cv9_desvh(display_long)|uniprotkb:DVU_1174(locus name) psi-mi:q72de6_desvh(display_long)|uniprotkb:DVU_0983(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090615 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010393.1|refseq:WP_010938471.1|ensemblbacteria:AAS95652(transcript)|ensemblbacteria:DVU_1174(gene) interpro:IPR003729(Protein of unknown function DUF151)|refseq:YP_010204.1|refseq:WP_010938282.1|ensemblbacteria:AAS95463(transcript)|ensemblbacteria:DVU_0983(gene)|go:"GO:0004518"(nuclease activity)|interpro:IPR036104|entrezgene/locuslink:2793325(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.57 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:JL3SRCfBJ6KSDGjOjAGdWL1L5OQ882 rogid:lyEmS5ln0s8rv5N6bjV4OQwaYSY882 intact-crc:149CE3F44273B4AC|rigid:JEjQut62rntdXwJ6bwD9/mgDamw false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72CK0 uniprotkb:Q72CE1 intact:EBI-10069053|ensemblbacteria:AAS95761 intact:EBI-10088833|ensemblbacteria:AAS95820 psi-mi:q72ck0_desvh(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:DVU_1283(locus name)|uniprotkb:galU(gene name)|psi-mi:galU(display_short) psi-mi:q72ce1_desvh(display_long)|uniprotkb:DVU_1342(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090732 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR029044|refseq:YP_010502.1|ensemblbacteria:AAS95761(transcript)|ensemblbacteria:DVU_1283(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process)|entrezgene/locuslink:2794349(identity) interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:YP_010561.1|refseq:WP_010938637.1|ensemblbacteria:AAS95820(transcript)|ensemblbacteria:DVU_1342(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.36 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:d6iZYQ9JPNw37P78x10YDxMTefo882 rogid:fa0kJzZ2o286DZS0MjTtQJVUKjg882 intact-crc:3DD35A35EB9FD965|rigid:oqxyOaRIP385UzHGT0gFg9UM+aI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729P1 uniprotkb:Q72CW4 intact:EBI-10090673|ensemblbacteria:AAS96782 intact:EBI-10090642|ensemblbacteria:AAS95647 psi-mi:q729p1_desvh(display_long)|uniprotkb:DVU_2309(locus name) psi-mi:q72cw4_desvh(display_long)|uniprotkb:DVU_1169(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090669 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_011522.1|refseq:WP_010939584.1|interpro:IPR033479|ensemblbacteria:AAS96782(transcript)|ensemblbacteria:DVU_2309(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) refseq:WP_010938466.1|interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|refseq:YP_010388.1|ensemblbacteria:AAS95647(transcript)|ensemblbacteria:DVU_1169(gene)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2794857(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.28 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:bUHYBKQ37CipQPNHaNUUb2ii9vk882 rogid:Hbv+dhABBjRf78c9JxkzJX5A9DI882 intact-crc:7F82CB7E97D1B33C|rigid:YGlBVC3erpzC7y4Rt3JvN8sfBuA false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72CV3 uniprotkb:Q72CV6 intact:EBI-10090688|ensemblbacteria:AAS95658 intact:EBI-10090685|ensemblbacteria:AAS95655 psi-mi:q72cv3_desvh(display_long)|uniprotkb:DVU_1180(locus name) psi-mi:q72cv6_desvh(display_long)|uniprotkb:DVU_1177(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090681 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003749(ThiamineS)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR016155(Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp)|refseq:YP_010399.1|refseq:WP_010938477.1|ensemblbacteria:AAS95658(transcript)|ensemblbacteria:DVU_1180(gene) refseq:YP_010396.1|ensemblbacteria:AAS95655(transcript)|ensemblbacteria:DVU_1177(gene)|entrezgene/locuslink:2796662(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.42 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:VMCFFXYk7Ck8XJlquSxfEH5xHSg882 rogid:WqLVDXn52G2NPFAoUFEdQvn+UNo882 intact-crc:B9909D2D2813C70A|rigid:ml7Kv2hWpwE7BgGR5w4g/fD2+34 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72CE9 uniprotkb:P61940 intact:EBI-10087505|ensemblbacteria:AAS95812 intact:EBI-10065097|ensemblbacteria:AAS95676 psi-mi:tig_desvh(display_long)|uniprotkb:PPIase(gene name synonym)|uniprotkb:DVU_1334(locus name)|uniprotkb:tig(gene name)|psi-mi:tig(display_short) psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090696 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005215(Trigger factor)|interpro:IPR008880(Trigger factor, C-terminal, bacterial)|interpro:IPR008881(Trigger factor, ribosome-binding, bacterial)|interpro:IPR027304|refseq:WP_010938629.1|refseq:YP_010553.1|ensemblbacteria:AAS95812(transcript)|ensemblbacteria:DVU_1334(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0007049"(cell cycle)|go:"GO:0015031"(protein transport)|go:"GO:0051301"(cell division)|interpro:IPR036611|interpro:IPR037041 interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467|entrezgene/locuslink:2796655(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.29 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:0DsKo13lsPnHvMMeGub4YeC18nI882 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 intact-crc:07137283E892BC36|rigid:WnjOE1jeOOMaLFoIpYG/eSSn3pk false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72CT0 uniprotkb:Q726K3 intact:EBI-10065973|ensemblbacteria:AAS95681 intact:EBI-10068003|ensemblbacteria:AAS97575 psi-mi:glya_desvh(display_long)|uniprotkb:DVU_1203(locus name)|uniprotkb:glyA(gene name)|psi-mi:glyA(display_short) psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090705 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001085(Glycine hydroxymethyltransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR019798|refseq:YP_010422.1|refseq:WP_010938499.1|ensemblbacteria:AAS95681(transcript)|ensemblbacteria:DVU_1203(gene)|go:"GO:0004372"(glycine hydroxymethyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019264"(glycine biosynthetic process from serine)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0035999"(tetrahydrofolate interconversion)|interpro:IPR039429|entrezgene/locuslink:2796660(identity) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.33 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:qvZABnUa4OAh0x1pR2kjrAk4Hrk882 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 intact-crc:C3FC94A7AE65D206|rigid:lQW+XbYNHaxMvsJEg5XgLPoJlGc false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72WL5 uniprotkb:Q72CS7 intact:EBI-10088259|ensemblbacteria:AAS94381 intact:EBI-10069770|ensemblbacteria:AAS95684 psi-mi:q72wl5_desvh(display_long)|uniprotkb:DVUA0074(locus name) psi-mi:q72cs7_desvh(display_long)|uniprotkb:DVU_1206(locus name)|uniprotkb:fabG(gene name)|psi-mi:fabG(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090714 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000863(Sulphotransferase)|interpro:IPR027417|refseq:YP_009114.1|refseq:WP_011176652.1|ensemblbacteria:AAS94381(transcript)|ensemblbacteria:DVUA0074(gene)|go:"GO:0008146"(sulfotransferase activity) interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR011284("3-oxoacyl-(acyl-carrier-protein) reductase")|interpro:IPR020904|refseq:YP_010425.1|refseq:WP_010938502.1|ensemblbacteria:AAS95684(transcript)|ensemblbacteria:DVU_1206(gene)|go:"GO:0004316"("3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity")|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0051287"(NAD binding)|go:"GO:0102131"(obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity)|go:"GO:0102132"(obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity)|interpro:IPR036291|entrezgene/locuslink:2796683(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.32 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:Dshy1tNQyuHwJlQRha2z2lpU5Cc882 rogid:nP40fho4nf5FZcXaxfSMEPniz+M882 intact-crc:6A62B533CD268E00|rigid:wHwmz3lx6uA/AYLR+hyo10kirEg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72CM6 uniprotkb:Q729Y2 intact:EBI-10066180|ensemblbacteria:AAS95735 intact:EBI-10090232|ensemblbacteria:AAS96688 psi-mi:q72cm6_desvh(display_long)|uniprotkb:DVU_1257(locus name) psi-mi:q729y2_desvh(display_long)|uniprotkb:DVU_2215(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090723 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_010476.1|refseq:WP_010938553.1|ensemblbacteria:AAS95735(transcript)|ensemblbacteria:DVU_1257(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2794603(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_011428.1|refseq:WP_010939490.1|ensemblbacteria:AAS96688(transcript)|ensemblbacteria:DVU_2215(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.48 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:ruXcKfPiOxTsYJSnCzXA90m2O+o882 rogid:7BtJC1L8IG9Liq+eH+epiZMJ13s882 intact-crc:4264C5C1CB8035E0|rigid:k7m+vlTz7wOX6eDqlG7wr2PGGyY false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q725M7 uniprotkb:Q72CF4 intact:EBI-10066303|ensemblbacteria:AAS97712 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:rpoz_desvh(display_long)|uniprotkb:RNA polymerase omega subunit(gene name synonym)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:DVU_3242(locus name)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090741 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|refseq:YP_012452.1|refseq:WP_010940500.1|ensemblbacteria:AAS97712(transcript)|ensemblbacteria:DVU_3242(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR036161 interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.91 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:O6sSrgt2kCmVvFu06S0wwA/xCy4882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:FD22BEBF842E05C8|rigid:sckq+9aIAB0Y0gUtphofpRLd6IM false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72C62 uniprotkb:Q725K7 intact:EBI-10069095|ensemblbacteria:AAS95900 intact:EBI-10088573|ensemblbacteria:AAS97657 psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:q725k7_desvh(display_long)|uniprotkb:DVU_3187(locus name)|uniprotkb:hup-4(gene name)|psi-mi:hup-4(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090786 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012397.1|refseq:WP_010940445.1|ensemblbacteria:AAS97657(transcript)|ensemblbacteria:DVU_3187(gene)|go:"GO:0003677"(DNA binding) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.34 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 rogid:GFMaFAKOcY+Lkh0z2aFEIx8HGpc882 intact-crc:245EF8239E2A0C08|rigid:PNwZy2a4Y9oi5z3nRqZynaRGfik false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72B01 uniprotkb:Q72C62 intact:EBI-10068511|ensemblbacteria:AAS96315 intact:EBI-10069095|ensemblbacteria:AAS95900 psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090750 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249 interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.26 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 intact-crc:665726D4E9F654E7|rigid:JkrojZk5zYsTadt2qni/RsYlFGE false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72C62 uniprotkb:Q72A89 intact:EBI-10069095|ensemblbacteria:AAS95900 intact:EBI-10088372|ensemblbacteria:AAS96581 psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:q72a89_desvh(display_long)|uniprotkb:DVU_2108(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090759 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) interpro:IPR033913|interpro:IPR003731(Dinitrogenase iron-molybdenum cofactor biosynthesis)|refseq:YP_011321.1|refseq:WP_010939385.1|ensemblbacteria:AAS96581(transcript)|ensemblbacteria:DVU_2108(gene)|go:"GO:0009399"(nitrogen fixation)|interpro:IPR036105 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.47 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 rogid:+uf1QymSwGF2gCbSBQ24eZ0yS1M882 intact-crc:D5220866C95FDE8D|rigid:IjzO5q5N97p1aOQb3zGgTVJnd3s false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72C62 uniprotkb:Q729Y2 intact:EBI-10069095|ensemblbacteria:AAS95900 intact:EBI-10090232|ensemblbacteria:AAS96688 psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:q729y2_desvh(display_long)|uniprotkb:DVU_2215(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090768 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_011428.1|refseq:WP_010939490.1|ensemblbacteria:AAS96688(transcript)|ensemblbacteria:DVU_2215(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.39 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 rogid:7BtJC1L8IG9Liq+eH+epiZMJ13s882 intact-crc:60E0ACAE51525411|rigid:NgPIetjay6DpHwg6Le8cA6aqUyQ false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729V7 uniprotkb:Q72BM5 intact:EBI-10064945|ensemblbacteria:AAS96713 intact:EBI-10064938|ensemblbacteria:AAS96088 psi-mi:q729v7_desvh(display_long)|uniprotkb:DVU_2240(locus name) psi-mi:q72bm5_desvh(display_long)|uniprotkb:"NAD(+) synthase [glutamine-hydrolyzing]"(gene name synonym)|uniprotkb:DVU_1610(locus name)|uniprotkb:nadE(gene name)|psi-mi:nadE(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090795 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002821(Hydantoinase/oxoprolinase)|interpro:IPR008040(Hydantoinaseoxoprolinase, N-terminal)|refseq:YP_011453.1|refseq:WP_010939515.1|ensemblbacteria:AAS96713(transcript)|ensemblbacteria:DVU_2240(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR043129 interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|interpro:IPR003694(NAD+ synthase)|interpro:IPR014445("Glutamine-dependent NAD(+) synthetase, GAT region")|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR022310|refseq:YP_010829.1|refseq:WP_010938901.1|ensemblbacteria:AAS96088(transcript)|ensemblbacteria:DVU_1610(gene)|go:"GO:0003952"("NAD+ synthase (glutamine-hydrolyzing) activity")|go:"GO:0004359"(glutaminase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008795"(NAD+ synthase activity)|go:"GO:0009435"(NAD biosynthetic process)|interpro:IPR036526|entrezgene/locuslink:2796063(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.90 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:lY4GJvddii/woep18tcb6guNssA882 rogid:k4s4BfpX6SHtSSy2NSA4EAO8e6w882 intact-crc:0D069D3E66D568EF|rigid:u3tWW5yd9ZfRwytRdouZmCXImTE false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72B01 uniprotkb:Q72A89 intact:EBI-10068511|ensemblbacteria:AAS96315 intact:EBI-10088372|ensemblbacteria:AAS96581 psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:q72a89_desvh(display_long)|uniprotkb:DVU_2108(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090804 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249|entrezgene/locuslink:2796473(identity) interpro:IPR033913|interpro:IPR003731(Dinitrogenase iron-molybdenum cofactor biosynthesis)|refseq:YP_011321.1|refseq:WP_010939385.1|ensemblbacteria:AAS96581(transcript)|ensemblbacteria:DVU_2108(gene)|go:"GO:0009399"(nitrogen fixation)|interpro:IPR036105 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.27 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 rogid:+uf1QymSwGF2gCbSBQ24eZ0yS1M882 intact-crc:E34B6A6577BFC6CC|rigid:WmzSlOGvzJUw25WShKI01yw2is4 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72C62 uniprotkb:Q726K3 intact:EBI-10069095|ensemblbacteria:AAS95900 intact:EBI-10068003|ensemblbacteria:AAS97575 psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090777 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.98 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 intact-crc:2E0291BBC9EB10B8|rigid:6jE72mwaXOiPTZoENHtd8D+mNaE false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Q4 uniprotkb:Q72AY3 intact:EBI-10090657|ensemblbacteria:AAS96768 intact:EBI-10090649|ensemblbacteria:AAS96333 psi-mi:q729q4_desvh(display_long)|uniprotkb:DVU_2295(locus name) psi-mi:q72ay3_desvh(display_long)|uniprotkb:DVU_1857(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090858 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR013656(PAS fold-4)|interpro:IPR029151|refseq:YP_011508.1|refseq:WP_010939570.1|ensemblbacteria:AAS96768(transcript)|ensemblbacteria:DVU_2295(gene)|go:"GO:0004673"(protein histidine kinase activity)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965 interpro:IPR033479|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011074.1|refseq:WP_010939143.1|ensemblbacteria:AAS96333(transcript)|ensemblbacteria:DVU_1857(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793639(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.59 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:l39CDKQKabDUnGqvZd+IQ42BVPI882 rogid:Q42nqmc4YSWut8zyqWjVgYZqcoE882 intact-crc:C23769CB7DC3992B|rigid:ghqO5mTd6t42Sz88nZSHad5sJvQ false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q725K7 uniprotkb:Q72B01 intact:EBI-10088573|ensemblbacteria:AAS97657 intact:EBI-10068511|ensemblbacteria:AAS96315 psi-mi:q725k7_desvh(display_long)|uniprotkb:DVU_3187(locus name)|uniprotkb:hup-4(gene name)|psi-mi:hup-4(display_short) psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090840 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012397.1|refseq:WP_010940445.1|ensemblbacteria:AAS97657(transcript)|ensemblbacteria:DVU_3187(gene)|go:"GO:0003677"(DNA binding) interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249|entrezgene/locuslink:2796473(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.48 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:GFMaFAKOcY+Lkh0z2aFEIx8HGpc882 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 intact-crc:274285762CD45615|rigid:PDkkq5jmVNFijvYk63oNdL7v+3g false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72B01 uniprotkb:Q726K3 intact:EBI-10068511|ensemblbacteria:AAS96315 intact:EBI-10068003|ensemblbacteria:AAS97575 psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090831 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249|entrezgene/locuslink:2796473(identity) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.32 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 intact-crc:89F7268FFB305184|rigid:LiSh8pCo2Dn6MrrlSEzz0/6iO0Y false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72B01 uniprotkb:P45573 intact:EBI-10068511|ensemblbacteria:AAS96315 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090822 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249|entrezgene/locuslink:2796473(identity) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.44 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:F0F2C03FFE898106|rigid:0aCK/kxY7X9wrmk4UtWt3vg2kmc false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Y2 uniprotkb:Q72B01 intact:EBI-10090232|ensemblbacteria:AAS96688 intact:EBI-10068511|ensemblbacteria:AAS96315 psi-mi:q729y2_desvh(display_long)|uniprotkb:DVU_2215(locus name) psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090813 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_011428.1|refseq:WP_010939490.1|ensemblbacteria:AAS96688(transcript)|ensemblbacteria:DVU_2215(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979 interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249|entrezgene/locuslink:2796473(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.75 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7BtJC1L8IG9Liq+eH+epiZMJ13s882 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 intact-crc:504B145694C74C93|rigid:jaU+JE2c4McSM3Vd+jWr2mRBOLA false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AX1 uniprotkb:Q72AY3 intact:EBI-10072129|ensemblbacteria:AAS96345 intact:EBI-10090649|ensemblbacteria:AAS96333 psi-mi:q72ax1_desvh(display_long)|uniprotkb:DVU_1869(locus name) psi-mi:q72ay3_desvh(display_long)|uniprotkb:DVU_1857(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090849 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011086.1|refseq:WP_010939155.1|ensemblbacteria:AAS96345(transcript)|ensemblbacteria:DVU_1869(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965 interpro:IPR033479|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011074.1|refseq:WP_010939143.1|ensemblbacteria:AAS96333(transcript)|ensemblbacteria:DVU_1857(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793639(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.79 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:zODmBSiePXYgrHWiAR5ouEjjwzU882 rogid:Q42nqmc4YSWut8zyqWjVgYZqcoE882 intact-crc:1A4B2AA121FAF1A4|rigid:Sihy0/TGgYlJiLKLWPK+WEEypRo false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AY3 uniprotkb:Q726S1 intact:EBI-10090649|ensemblbacteria:AAS96333 intact:EBI-10090880|ensemblbacteria:AAS97506 psi-mi:q72ay3_desvh(display_long)|uniprotkb:DVU_1857(locus name) psi-mi:q726s1_desvh(display_long)|uniprotkb:DVU_3035(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090876 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011074.1|refseq:WP_010939143.1|ensemblbacteria:AAS96333(transcript)|ensemblbacteria:DVU_1857(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793639(identity) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR033480|ensemblbacteria:AAS97506(transcript)|ensemblbacteria:DVU_3035(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.54 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:Q42nqmc4YSWut8zyqWjVgYZqcoE882 rogid:5xpsgad0Wq7RuI/BEX75FHWgnOk882 intact-crc:052C24A84C0DF6D5|rigid:OK6loIcVa+H7XAf+k548sfeVfuM false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q726M4 uniprotkb:Q72AY3 intact:EBI-10090892|ensemblbacteria:AAS97553 intact:EBI-10090649|ensemblbacteria:AAS96333 psi-mi:q726m4_desvh(display_long)|uniprotkb:DVU_3082(locus name) psi-mi:q72ay3_desvh(display_long)|uniprotkb:DVU_1857(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090888 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR021796|refseq:YP_012293.1|ensemblbacteria:AAS97553(transcript)|ensemblbacteria:DVU_3082(gene)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) interpro:IPR033479|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011074.1|refseq:WP_010939143.1|ensemblbacteria:AAS96333(transcript)|ensemblbacteria:DVU_1857(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793639(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.77 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:KoNf9wZAqg7aOZsQjfv7u7clTDk882 rogid:Q42nqmc4YSWut8zyqWjVgYZqcoE882 intact-crc:32D04AE30B701FB5|rigid:G4FV6z8kGJQupFLzcpNtmuHQKio false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729A8 uniprotkb:Q72AB5 intact:EBI-10067088|ensemblbacteria:AAS96916 intact:EBI-10071272|ensemblbacteria:AAS96555 psi-mi:q729a8_desvh(display_long)|uniprotkb:DVU_2444(locus name) psi-mi:q72ab5_desvh(display_long)|uniprotkb:DVU_2082(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090948 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011656.1|refseq:WP_010939715.1|ensemblbacteria:AAS96916(transcript)|ensemblbacteria:DVU_2444(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187 interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011295.1|refseq:WP_010939359.1|ensemblbacteria:AAS96555(transcript)|ensemblbacteria:DVU_2082(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187|entrezgene/locuslink:2793536(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.55 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:uLsLwVWIWtrawkoz/HUPrhjN3kc882 rogid:9Qv+5NMFmhdNFWdT0bYugLJEInA882 intact-crc:4A35F36F5D76F4F4|rigid:DnGZ0rwYSoF4fIJ3fYTaYfNuwn8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q728P7 uniprotkb:Q72AW4 intact:EBI-10090931|ensemblbacteria:AAS97028 intact:EBI-10068372|ensemblbacteria:AAS96352 psi-mi:q728p7_desvh(display_long)|uniprotkb:DVU_2556(locus name) psi-mi:q72aw4_desvh(display_long)|uniprotkb:DVU_1876(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090939 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011768.1|refseq:WP_010939826.1|ensemblbacteria:AAS97028(transcript)|ensemblbacteria:DVU_2556(gene) interpro:IPR001623(Heat shock protein DnaJ, N-terminal)|interpro:IPR002939(Chaperone DnaJ, C-terminal)|interpro:IPR008971(HSP40/DnaJ peptide-binding)|interpro:IPR018253|refseq:YP_011093.1|refseq:WP_010939162.1|ensemblbacteria:AAS96352(transcript)|ensemblbacteria:DVU_1876(gene)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036869|entrezgene/locuslink:2794320(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.65 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:eqI4FwyDGJgEInMMLxZFkA8JIFc882 rogid:lYpy6gR6cAedxr5LBah9piNkyBw882 intact-crc:F2B72360606E0E35|rigid:GiFHq3SJ+/YUe2DoHtznmgbbYYQ false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729P1 uniprotkb:Q72AY3 intact:EBI-10090673|ensemblbacteria:AAS96782 intact:EBI-10090649|ensemblbacteria:AAS96333 psi-mi:q729p1_desvh(display_long)|uniprotkb:DVU_2309(locus name) psi-mi:q72ay3_desvh(display_long)|uniprotkb:DVU_1857(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090867 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_011522.1|refseq:WP_010939584.1|interpro:IPR033479|ensemblbacteria:AAS96782(transcript)|ensemblbacteria:DVU_2309(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) interpro:IPR033479|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011074.1|refseq:WP_010939143.1|ensemblbacteria:AAS96333(transcript)|ensemblbacteria:DVU_1857(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793639(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.85 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:bUHYBKQ37CipQPNHaNUUb2ii9vk882 rogid:Q42nqmc4YSWut8zyqWjVgYZqcoE882 intact-crc:A682BDFFD86B5D5C|rigid:T7a0Z/a0EI3KBFl6RrnF/swAe5w false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AX1 uniprotkb:Q726M4 intact:EBI-10072129|ensemblbacteria:AAS96345 intact:EBI-10090892|ensemblbacteria:AAS97553 psi-mi:q72ax1_desvh(display_long)|uniprotkb:DVU_1869(locus name) psi-mi:q726m4_desvh(display_long)|uniprotkb:DVU_3082(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090918 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011086.1|refseq:WP_010939155.1|ensemblbacteria:AAS96345(transcript)|ensemblbacteria:DVU_1869(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2794313(identity) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR021796|refseq:YP_012293.1|ensemblbacteria:AAS97553(transcript)|ensemblbacteria:DVU_3082(gene)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.62 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:zODmBSiePXYgrHWiAR5ouEjjwzU882 rogid:KoNf9wZAqg7aOZsQjfv7u7clTDk882 intact-crc:5F26B7B3BB3EC1FA|rigid:5W3Wb7FYps58GJ/NG7+QHlvpByg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729P1 uniprotkb:Q72AX1 intact:EBI-10090673|ensemblbacteria:AAS96782 intact:EBI-10072129|ensemblbacteria:AAS96345 psi-mi:q729p1_desvh(display_long)|uniprotkb:DVU_2309(locus name) psi-mi:q72ax1_desvh(display_long)|uniprotkb:DVU_1869(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090909 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_011522.1|refseq:WP_010939584.1|interpro:IPR033479|ensemblbacteria:AAS96782(transcript)|ensemblbacteria:DVU_2309(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011086.1|refseq:WP_010939155.1|ensemblbacteria:AAS96345(transcript)|ensemblbacteria:DVU_1869(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2794313(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.64 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:bUHYBKQ37CipQPNHaNUUb2ii9vk882 rogid:zODmBSiePXYgrHWiAR5ouEjjwzU882 intact-crc:84CE97107BCCE359|rigid:YgG/qQbHbEqZ6l+PXoAjBtsKXAI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Q4 uniprotkb:Q72AX1 intact:EBI-10090657|ensemblbacteria:AAS96768 intact:EBI-10072129|ensemblbacteria:AAS96345 psi-mi:q729q4_desvh(display_long)|uniprotkb:DVU_2295(locus name) psi-mi:q72ax1_desvh(display_long)|uniprotkb:DVU_1869(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090900 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR013656(PAS fold-4)|interpro:IPR029151|refseq:YP_011508.1|refseq:WP_010939570.1|ensemblbacteria:AAS96768(transcript)|ensemblbacteria:DVU_2295(gene)|go:"GO:0004673"(protein histidine kinase activity)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965 interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011086.1|refseq:WP_010939155.1|ensemblbacteria:AAS96345(transcript)|ensemblbacteria:DVU_1869(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2794313(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.26 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:l39CDKQKabDUnGqvZd+IQ42BVPI882 rogid:zODmBSiePXYgrHWiAR5ouEjjwzU882 intact-crc:857C4D5E9871DC0A|rigid:E5Lv/06nGxEJiKeMNVx0mh97AeI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AW5 uniprotkb:Q728P7 intact:EBI-10068375|ensemblbacteria:AAS96351 intact:EBI-10090931|ensemblbacteria:AAS97028 psi-mi:q72aw5_desvh(display_long)|uniprotkb:DVU_1875(locus name) psi-mi:q728p7_desvh(display_long)|uniprotkb:DVU_2556(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090927 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011092.1|refseq:WP_010939161.1|ensemblbacteria:AAS96351(transcript)|ensemblbacteria:DVU_1875(gene)|entrezgene/locuslink:2794319(identity) refseq:YP_011768.1|refseq:WP_010939826.1|ensemblbacteria:AAS97028(transcript)|ensemblbacteria:DVU_2556(gene) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.58 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:teM1VjT6+wAHBOOgznm0s6z3ny0882 rogid:eqI4FwyDGJgEInMMLxZFkA8JIFc882 intact-crc:0F7683070BD61E5E|rigid:uYVj3rny4B/yL+rIdwpbuSwGf+Q false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Y2 uniprotkb:Q726K3 intact:EBI-10090232|ensemblbacteria:AAS96688 intact:EBI-10068003|ensemblbacteria:AAS97575 psi-mi:q729y2_desvh(display_long)|uniprotkb:DVU_2215(locus name) psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091011 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_011428.1|refseq:WP_010939490.1|ensemblbacteria:AAS96688(transcript)|ensemblbacteria:DVU_2215(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2795362(identity) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.48 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7BtJC1L8IG9Liq+eH+epiZMJ13s882 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 intact-crc:5FA2B8762DE23F5B|rigid:2SKwPA5VyFf3pw+BXQpuxdwbq0U false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Y2 uniprotkb:P45573 intact:EBI-10090232|ensemblbacteria:AAS96688 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:q729y2_desvh(display_long)|uniprotkb:DVU_2215(locus name) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091002 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_011428.1|refseq:WP_010939490.1|ensemblbacteria:AAS96688(transcript)|ensemblbacteria:DVU_2215(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2795362(identity) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.54 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7BtJC1L8IG9Liq+eH+epiZMJ13s882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:2CC781F883F8721B|rigid:wQ5Qv7bhQa5ZiWa3fZA3MrpRGS8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72A58 uniprotkb:Q726Y7 intact:EBI-10067393|ensemblbacteria:AAS96612 intact:EBI-10067399|ensemblbacteria:AAS97440 psi-mi:q72a58_desvh(display_long)|uniprotkb:DVU_2139(locus name) psi-mi:q726y7_desvh(display_long)|uniprotkb:Acetate--CoA ligase(gene name synonym)|uniprotkb:Acyl-activating enzyme(gene name synonym)|uniprotkb:DVU_2969(locus name)|uniprotkb:acsA(gene name)|psi-mi:acsA(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090993 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000286(Histone deacetylase superfamily)|interpro:IPR023801|refseq:YP_011352.1|refseq:WP_010939416.1|ensemblbacteria:AAS96612(transcript)|ensemblbacteria:DVU_2139(gene)|interpro:IPR023696|interpro:IPR037138|entrezgene/locuslink:2794218(identity) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011904(Acetate--CoA ligase)|interpro:IPR020845|interpro:IPR025110|refseq:YP_012180.1|interpro:IPR032387|refseq:WP_010940228.1|ensemblbacteria:AAS97440(transcript)|ensemblbacteria:DVU_2969(gene)|go:"GO:0003987"(acetate-CoA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016208"(AMP binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0019427"(acetyl-CoA biosynthetic process from acetate) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.46 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:wIrpH05ijl4wwiq8kzb2PBhwt44882 rogid:CpCbQcDPOD2enofgGhmyTGYYQTE882 intact-crc:3C4389A59B713547|rigid:o9n/D17ODCB6H3VLTlm62qfUIKM false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72A89 uniprotkb:Q729Y2 intact:EBI-10088372|ensemblbacteria:AAS96581 intact:EBI-10090232|ensemblbacteria:AAS96688 psi-mi:q72a89_desvh(display_long)|uniprotkb:DVU_2108(locus name) psi-mi:q729y2_desvh(display_long)|uniprotkb:DVU_2215(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090984 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033913|interpro:IPR003731(Dinitrogenase iron-molybdenum cofactor biosynthesis)|refseq:YP_011321.1|refseq:WP_010939385.1|ensemblbacteria:AAS96581(transcript)|ensemblbacteria:DVU_2108(gene)|go:"GO:0009399"(nitrogen fixation)|interpro:IPR036105|entrezgene/locuslink:2793380(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_011428.1|refseq:WP_010939490.1|ensemblbacteria:AAS96688(transcript)|ensemblbacteria:DVU_2215(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.27 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:+uf1QymSwGF2gCbSBQ24eZ0yS1M882 rogid:7BtJC1L8IG9Liq+eH+epiZMJ13s882 intact-crc:B181753F50B81C13|rigid:KU4X3QCu6ZfYJkvj0R3qfXjF5wk false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72A93 uniprotkb:Q729E7 intact:EBI-10065729|ensemblbacteria:AAS96577 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090975 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.27 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:3D9C385E2CB27FD3|rigid:7awMeSZMFxDVCLduvDv3jvtqJas false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72A93 uniprotkb:Q729E9 intact:EBI-10065729|ensemblbacteria:AAS96577 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090966 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.27 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:537FC88F304685C7|rigid:twBnNw6gPAPEbV/qEJXMx+p17HQ false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72A94 uniprotkb:Q72A93 intact:EBI-10065907|ensemblbacteria:AAS96576 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q72a94_desvh(display_long)|uniprotkb:DVU_2103(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10090957 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011316.1|refseq:WP_010939380.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|ensemblbacteria:AAS96576(transcript)|ensemblbacteria:DVU_2103(gene)|entrezgene/locuslink:2795479(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.30 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:bIlVXxSJZO2d9vZ2o9xs0d/Wo/Q882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:CC0520379FADC301|rigid:J2KXMZTPl6pwyidEcpbCEMGVKy8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729I6 uniprotkb:Q729E7 intact:EBI-10065723|ensemblbacteria:AAS96837 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091065 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.43 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:42535C6192B69D6B|rigid:q9sSJHBI4Tx0JQt9drTgG9++98k false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729P1 uniprotkb:Q726M4 intact:EBI-10090673|ensemblbacteria:AAS96782 intact:EBI-10090892|ensemblbacteria:AAS97553 psi-mi:q729p1_desvh(display_long)|uniprotkb:DVU_2309(locus name) psi-mi:q726m4_desvh(display_long)|uniprotkb:DVU_3082(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091056 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_011522.1|refseq:WP_010939584.1|interpro:IPR033479|ensemblbacteria:AAS96782(transcript)|ensemblbacteria:DVU_2309(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2795355(identity) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR021796|refseq:YP_012293.1|ensemblbacteria:AAS97553(transcript)|ensemblbacteria:DVU_3082(gene)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.58 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:bUHYBKQ37CipQPNHaNUUb2ii9vk882 rogid:KoNf9wZAqg7aOZsQjfv7u7clTDk882 intact-crc:1F03F398769A1227|rigid:cdMWXaCGLC7vGLmiTtFbBcG1kM8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729P1 uniprotkb:Q726S1 intact:EBI-10090673|ensemblbacteria:AAS96782 intact:EBI-10090880|ensemblbacteria:AAS97506 psi-mi:q729p1_desvh(display_long)|uniprotkb:DVU_2309(locus name) psi-mi:q726s1_desvh(display_long)|uniprotkb:DVU_3035(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091047 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_011522.1|refseq:WP_010939584.1|interpro:IPR033479|ensemblbacteria:AAS96782(transcript)|ensemblbacteria:DVU_2309(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2795355(identity) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR033480|ensemblbacteria:AAS97506(transcript)|ensemblbacteria:DVU_3035(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.54 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:bUHYBKQ37CipQPNHaNUUb2ii9vk882 rogid:5xpsgad0Wq7RuI/BEX75FHWgnOk882 intact-crc:2250DF65FC46CE36|rigid:s/YgOhItQwAVtrC3RAWE3d4G9os false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Y2 uniprotkb:Q725K7 intact:EBI-10090232|ensemblbacteria:AAS96688 intact:EBI-10088573|ensemblbacteria:AAS97657 psi-mi:q729y2_desvh(display_long)|uniprotkb:DVU_2215(locus name) psi-mi:q725k7_desvh(display_long)|uniprotkb:DVU_3187(locus name)|uniprotkb:hup-4(gene name)|psi-mi:hup-4(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091020 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_011428.1|refseq:WP_010939490.1|ensemblbacteria:AAS96688(transcript)|ensemblbacteria:DVU_2215(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2795362(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012397.1|refseq:WP_010940445.1|ensemblbacteria:AAS97657(transcript)|ensemblbacteria:DVU_3187(gene)|go:"GO:0003677"(DNA binding) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.48 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7BtJC1L8IG9Liq+eH+epiZMJ13s882 rogid:GFMaFAKOcY+Lkh0z2aFEIx8HGpc882 intact-crc:726E25B144FEAAD5|rigid:H9AmDK23rq9TM1uXMYcXrcW3oQI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Q4 uniprotkb:Q729P1 intact:EBI-10090657|ensemblbacteria:AAS96768 intact:EBI-10090673|ensemblbacteria:AAS96782 psi-mi:q729q4_desvh(display_long)|uniprotkb:DVU_2295(locus name) psi-mi:q729p1_desvh(display_long)|uniprotkb:DVU_2309(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091029 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR013656(PAS fold-4)|interpro:IPR029151|refseq:YP_011508.1|refseq:WP_010939570.1|ensemblbacteria:AAS96768(transcript)|ensemblbacteria:DVU_2295(gene)|go:"GO:0004673"(protein histidine kinase activity)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2795449(identity) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_011522.1|refseq:WP_010939584.1|interpro:IPR033479|ensemblbacteria:AAS96782(transcript)|ensemblbacteria:DVU_2309(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.59 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:l39CDKQKabDUnGqvZd+IQ42BVPI882 rogid:bUHYBKQ37CipQPNHaNUUb2ii9vk882 intact-crc:4F615BDB0B92AAC6|rigid:UuO1bheeSHkWW151ZWcfa3FGSjU false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729F0 uniprotkb:Q729E9 intact:EBI-10065740|ensemblbacteria:AAS96874 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091074 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.58 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:6B11930BFA0D05CD|rigid:tMtB5IQq9+CMQsoqNGUBAHBe3LQ false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729E9 uniprotkb:Q729E7 intact:EBI-10065732|ensemblbacteria:AAS96875 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091083 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2794487(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.38 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:99A0A8519DB4EA94|rigid:u2I3RP9eO/a1DRDVTVjSRihPsdc false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729A3 uniprotkb:Q726B7 intact:EBI-10071362|ensemblbacteria:AAS96921 intact:EBI-10089204|ensemblbacteria:AAS97655 psi-mi:metk_desvh(display_long)|uniprotkb:MAT(gene name synonym)|uniprotkb:Methionine adenosyltransferase(gene name synonym)|uniprotkb:DVU_2449(locus name)|uniprotkb:metK(gene name)|psi-mi:metK(display_short) psi-mi:q726b7_desvh(display_long)|uniprotkb:roO(gene name)|psi-mi:roO(display_short)|uniprotkb:DVU_3185(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091092 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002133(S-adenosylmethionine synthetase)|interpro:IPR022628|interpro:IPR022629|interpro:IPR022630|interpro:IPR022631|interpro:IPR022636|refseq:YP_011661.1|refseq:WP_010939720.1|ensemblbacteria:AAS96921(transcript)|ensemblbacteria:DVU_2449(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004478"(methionine adenosyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006556"(S-adenosylmethionine biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|entrezgene/locuslink:2796626(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR008254(Flavodoxin/nitric oxide synthase)|interpro:IPR016440(Rubredoxin-oxygen oxidoreductase)|interpro:IPR029039|refseq:YP_012395.1|refseq:WP_010940443.1|ensemblbacteria:AAS97655(transcript)|ensemblbacteria:DVU_3185(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036866 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.28 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:UBqFyeh7iE7MyB+DP/nQDl+woeI882 rogid:CNeOdvwXTJMCaulcUy+HDmdOOJY882 intact-crc:46C9C1E027BADEB4|rigid:U78xQBpsYBHyoXXVFh1W5Myxg+I false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Q4 uniprotkb:Q726M4 intact:EBI-10090657|ensemblbacteria:AAS96768 intact:EBI-10090892|ensemblbacteria:AAS97553 psi-mi:q729q4_desvh(display_long)|uniprotkb:DVU_2295(locus name) psi-mi:q726m4_desvh(display_long)|uniprotkb:DVU_3082(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091038 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR013656(PAS fold-4)|interpro:IPR029151|refseq:YP_011508.1|refseq:WP_010939570.1|ensemblbacteria:AAS96768(transcript)|ensemblbacteria:DVU_2295(gene)|go:"GO:0004673"(protein histidine kinase activity)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2795449(identity) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR021796|refseq:YP_012293.1|ensemblbacteria:AAS97553(transcript)|ensemblbacteria:DVU_3082(gene)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.26 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:l39CDKQKabDUnGqvZd+IQ42BVPI882 rogid:KoNf9wZAqg7aOZsQjfv7u7clTDk882 intact-crc:16CCA628FCED5492|rigid:FZuytss3ml8u+0bq2JbyctFPm2Q false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q727D9 uniprotkb:Q725R1 intact:EBI-10070915|ensemblbacteria:AAS97388 intact:EBI-10070901|ensemblbacteria:AAS97832 psi-mi:prmc_desvh(display_long)|uniprotkb:N5-glutamine methyltransferase PrmC(gene name synonym)|uniprotkb:"Protein-(glutamine-N5) MTase PrmC"(gene name synonym)|uniprotkb:Protein-glutamine N-methyltransferase PrmC(gene name synonym)|uniprotkb:hemK(gene name synonym)|uniprotkb:DVU_2916(locus name)|uniprotkb:prmC(gene name)|psi-mi:prmC(display_short) psi-mi:q725r1_desvh(display_long)|uniprotkb:DVU_3363(locus name)|uniprotkb:sun(gene name)|psi-mi:sun(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091146 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR025714|interpro:IPR004556(Modification methylase HemK)|interpro:IPR019874|interpro:IPR029063|refseq:YP_012128.1|refseq:WP_010940176.1|ensemblbacteria:AAS97388(transcript)|ensemblbacteria:DVU_2916(gene)|go:"GO:0018364"(peptidyl-glutamine methylation)|go:"GO:0036009"(protein-glutamine N-methyltransferase activity)|go:"GO:0102559"("protein-(glutamine-N5) methyltransferase activity")|interpro:IPR040758|entrezgene/locuslink:2794057(identity) interpro:IPR001678("Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p")|interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR023267|interpro:IPR029063|refseq:YP_012572.1|refseq:WP_010940618.1|ensemblbacteria:AAS97832(transcript)|ensemblbacteria:DVU_3363(gene)|go:"GO:0001510"(RNA methylation)|go:"GO:0003723"(RNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008168"(methyltransferase activity)|interpro:IPR035926 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.99 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:EGtWVtBqEAeqY1+hl+FVL7PGDjc882 rogid:WgJFg0eS2j0sETKJQiaNtDtn6nc882 intact-crc:F8FB49C46A7E5574|rigid:fiowPPU+t2DUMrXqcjwHDXXPA6g false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q725J9 uniprotkb:Q727D9 intact:EBI-10070905|ensemblbacteria:AAS97644 intact:EBI-10070915|ensemblbacteria:AAS97388 psi-mi:q725j9_desvh(display_long)|uniprotkb:2-methoxy-6-polyprenyl-1,4-benzoquinol methylase(gene name synonym)|uniprotkb:Demethylmenaquinone methyltransferase(gene name synonym)|uniprotkb:DVU_3174(locus name)|uniprotkb:ubiE(gene name)|psi-mi:ubiE(display_short) psi-mi:prmc_desvh(display_long)|uniprotkb:N5-glutamine methyltransferase PrmC(gene name synonym)|uniprotkb:"Protein-(glutamine-N5) MTase PrmC"(gene name synonym)|uniprotkb:Protein-glutamine N-methyltransferase PrmC(gene name synonym)|uniprotkb:hemK(gene name synonym)|uniprotkb:DVU_2916(locus name)|uniprotkb:prmC(gene name)|psi-mi:prmC(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091137 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004033(UbiE/COQ5 methyltransferase)|interpro:IPR023576|interpro:IPR029063|refseq:YP_012384.1|refseq:WP_010940432.1|go:"GO:0043333"(2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity)|go:"GO:0043770"(demethylmenaquinone methyltransferase activity)|go:"GO:0102027"("S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity")|go:"GO:0102094"("S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity")|go:"GO:0102955"("S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity")|ensemblbacteria:AAS97644(transcript)|ensemblbacteria:DVU_3174(gene)|go:"GO:0006744"(ubiquinone biosynthetic process)|go:"GO:0009060"(aerobic respiration)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0032259"(methylation) interpro:IPR025714|interpro:IPR004556(Modification methylase HemK)|interpro:IPR019874|interpro:IPR029063|refseq:YP_012128.1|refseq:WP_010940176.1|ensemblbacteria:AAS97388(transcript)|ensemblbacteria:DVU_2916(gene)|go:"GO:0018364"(peptidyl-glutamine methylation)|go:"GO:0036009"(protein-glutamine N-methyltransferase activity)|go:"GO:0102559"("protein-(glutamine-N5) methyltransferase activity")|interpro:IPR040758|entrezgene/locuslink:2794057(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.99 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:Ja8FmiSTJUD75AEgqsA33VuaICY882 rogid:EGtWVtBqEAeqY1+hl+FVL7PGDjc882 intact-crc:E4841552F1F45516|rigid:qLbWyKvQ97hgeqpZctBBw/h3gKo false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q726K3 uniprotkb:P45573 intact:EBI-10068003|ensemblbacteria:AAS97575 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091128 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737 ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072|entrezgene/locuslink:2796326(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.78 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:7031EFE1D75618AA|rigid:WcggFTfRb3OyEw+O5lAGKY28Z4U false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q728D0 uniprotkb:Q728C9 intact:EBI-10065612|ensemblbacteria:AAS97145 intact:EBI-10065615|ensemblbacteria:AAS97146 psi-mi:q728d0_desvh(display_long)|uniprotkb:DVU_2673(locus name) psi-mi:q728c9_desvh(display_long)|uniprotkb:DVU_2674(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091110 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000447(FAD-dependent glycerol-3-phosphate dehydrogenase)|interpro:IPR006076(FAD dependent oxidoreductase)|refseq:YP_011885.1|refseq:WP_010939942.1|ensemblbacteria:AAS97145(transcript)|ensemblbacteria:DVU_2673(gene)|go:"GO:0004368"("glycerol-3-phosphate dehydrogenase (quinone) activity")|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0009331"(glycerol-3-phosphate dehydrogenase complex)|interpro:IPR036188|entrezgene/locuslink:2795044(identity) refseq:WP_010939943.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:YP_011886.1|ensemblbacteria:AAS97146(transcript)|ensemblbacteria:DVU_2674(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|interpro:IPR036010 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.96 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:fmhid+y35JPhego3Sq84XbrJpy8882 rogid:8Ml5+CDviPORGaP/Qqy/mVVBX/4882 intact-crc:D7D3364239C74975|rigid:eLXn6pvQMSJ9dFJJ8lOE0MglgpE false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q727F2 uniprotkb:Q728S1 intact:EBI-10066657|ensemblbacteria:AAS97375 intact:EBI-10066651|ensemblbacteria:AAS97004 psi-mi:q727f2_desvh(display_long)|uniprotkb:DVU_2903(locus name) psi-mi:q728s1_desvh(display_long)|uniprotkb:DVU_2532(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091101 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006674(Metal-dependent phosphohydrolase, HD region, subdomain)|refseq:YP_012115.1|refseq:WP_010940163.1|ensemblbacteria:AAS97375(transcript)|ensemblbacteria:DVU_2903(gene) interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|refseq:YP_011744.1|refseq:WP_010939802.1|ensemblbacteria:DVU_2532(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|ensemblbacteria:AAS97004(transcript)|entrezgene/locuslink:2795718(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:1.00 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:0/bXQjFgNaeeOynT3rcrV2FHMqY882 rogid:MC+kefGH3RcEtp+dJzYy8Ml94mk882 intact-crc:0F693DD19D95EA82|rigid:NoDlHE3KzZ//zPqePJ7J4+voSI8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q727U8 uniprotkb:Q727F8 intact:EBI-10066617|ensemblbacteria:AAS97228 intact:EBI-10066614|ensemblbacteria:AAS97369 psi-mi:q727u8_desvh(display_long)|uniprotkb:mqnE(gene name)|psi-mi:mqnE(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnE(gene name synonym)|uniprotkb:DVU_2756(locus name) psi-mi:q727f8_desvh(display_long)|uniprotkb:DVU_2897(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091119 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022432|refseq:YP_011968.1|refseq:WP_010940022.1|ensemblbacteria:AAS97228(transcript)|ensemblbacteria:DVU_2756(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102573"(aminodeoxyfutalosine synthase activity)|interpro:IPR034405|entrezgene/locuslink:2794029(identity) refseq:WP_010940157.1|interpro:IPR002737(Protein of unknown function DUF52)|refseq:YP_012109.1|ensemblbacteria:AAS97369(transcript)|ensemblbacteria:DVU_2897(gene) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.28 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:bb3wBr3eiO33UmFoNQPmFaoQ0Ok882 rogid:iomGR6d1/uVoy1VhN1hIsjEFacE882 intact-crc:E08CD33B22E1D018|rigid:NHm9gBXNvQhW7ETPEhpaMpKaKhU false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q726K3 uniprotkb:Q725K7 intact:EBI-10068003|ensemblbacteria:AAS97575 intact:EBI-10088573|ensemblbacteria:AAS97657 psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:q725k7_desvh(display_long)|uniprotkb:DVU_3187(locus name)|uniprotkb:hup-4(gene name)|psi-mi:hup-4(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091164 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737|entrezgene/locuslink:2795976(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012397.1|refseq:WP_010940445.1|ensemblbacteria:AAS97657(transcript)|ensemblbacteria:DVU_3187(gene)|go:"GO:0003677"(DNA binding) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.42 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 rogid:GFMaFAKOcY+Lkh0z2aFEIx8HGpc882 intact-crc:41AEBFEA84AEDAA4|rigid:HUTRTUvwlLdIyfXO7S2MHzNCgLw false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q725R1 uniprotkb:Q725J9 intact:EBI-10070901|ensemblbacteria:AAS97832 intact:EBI-10070905|ensemblbacteria:AAS97644 psi-mi:q725r1_desvh(display_long)|uniprotkb:DVU_3363(locus name)|uniprotkb:sun(gene name)|psi-mi:sun(display_short) psi-mi:q725j9_desvh(display_long)|uniprotkb:2-methoxy-6-polyprenyl-1,4-benzoquinol methylase(gene name synonym)|uniprotkb:Demethylmenaquinone methyltransferase(gene name synonym)|uniprotkb:DVU_3174(locus name)|uniprotkb:ubiE(gene name)|psi-mi:ubiE(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091173 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001678("Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p")|interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR023267|interpro:IPR029063|refseq:YP_012572.1|refseq:WP_010940618.1|ensemblbacteria:AAS97832(transcript)|ensemblbacteria:DVU_3363(gene)|go:"GO:0001510"(RNA methylation)|go:"GO:0003723"(RNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008168"(methyltransferase activity)|interpro:IPR035926 interpro:IPR004033(UbiE/COQ5 methyltransferase)|interpro:IPR023576|interpro:IPR029063|refseq:YP_012384.1|refseq:WP_010940432.1|go:"GO:0043333"(2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity)|go:"GO:0043770"(demethylmenaquinone methyltransferase activity)|go:"GO:0102027"("S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity")|go:"GO:0102094"("S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity")|go:"GO:0102955"("S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity")|ensemblbacteria:AAS97644(transcript)|ensemblbacteria:DVU_3174(gene)|go:"GO:0006744"(ubiquinone biosynthetic process)|go:"GO:0009060"(aerobic respiration)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0032259"(methylation)|entrezgene/locuslink:2793824(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.98 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:WgJFg0eS2j0sETKJQiaNtDtn6nc882 rogid:Ja8FmiSTJUD75AEgqsA33VuaICY882 intact-crc:D0F273C5FF92E153|rigid:/FHpD9yC6Rm4Ovl0wWBkmWbnTeM false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EN7 intact:EBI-10089752 intact:EBI-10071083|ensemblbacteria:AAS95022 intact:EBI-10053348 psi-mi:q72en7_desvh(display_long)|uniprotkb:DVU_0540(locus name) psi-mi:ebi10053348(display_short)|psi-mi:EBI-10089752(display_long) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091182 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR009056(Cytochrome c, monohaem)|interpro:IPR021796|refseq:YP_009763.1|refseq:WP_010937846.1|ensemblbacteria:AAS95022(transcript)|ensemblbacteria:DVU_0540(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016021"(integral component of membrane)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036097|interpro:IPR036890 - psi-mi:"MI:0469"(intact) - no-uniprot-update:|caution:The sequence has been withdrawn from uniprot. figure legend:Dataset S8|author-confidence:0.49 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:q3M9u+/B53O7a3lBlPKb6sver40882 - intact-crc:2473A45A24FA2609 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) intact:EBI-10089752 uniprotkb:Q72DI4 intact:EBI-10053348 intact:EBI-10089754|ensemblbacteria:AAS95425 psi-mi:ebi10053348(display_short)|psi-mi:EBI-10089752(display_long) psi-mi:q72di4_desvh(display_long)|uniprotkb:DVU_0945(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091190 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) - interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR013656(PAS fold-4)|interpro:IPR021796|refseq:YP_010166.1|refseq:WP_010938244.1|ensemblbacteria:AAS95425(transcript)|ensemblbacteria:DVU_0945(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|interpro:IPR036097|interpro:IPR036890 psi-mi:"MI:0469"(intact) no-uniprot-update:|caution:The sequence has been withdrawn from uniprot. - figure legend:Dataset S8|author-confidence:0.49 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 - rogid:1/cK7NfeR/CEV66HRfZAvwD0xOM882 intact-crc:7FF0F3B8A0EBD77D false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729K0 intact:EBI-10053354 intact:EBI-10067297|ensemblbacteria:AAS96823 - psi-mi:trmfo_desvh(display_long)|uniprotkb:"Folate-dependent tRNA (uracil-5-)-methyltransferase"(gene name synonym)|uniprotkb:"Folate-dependent tRNA(M-5-U54)-methyltransferase"(gene name synonym)|uniprotkb:DVU_2350(locus name)|uniprotkb:trmFO(gene name)|psi-mi:trmFO(display_short) psi-mi:dorf40861(display_short)|psi-mi:EBI-10053354(display_long) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091198 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR040131|interpro:IPR002218(Glucose-inhibited division protein A)|interpro:IPR004417(Gid protein)|refseq:YP_011563.1|ensemblbacteria:AAS96823(transcript)|ensemblbacteria:DVU_2350(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0030698"("5,10-methylenetetrahydrofolate-dependent tRNA (m5U54) methyltransferase activity")|go:"GO:0047151"("methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) activity")|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188 - psi-mi:"MI:0469"(intact) - comment:"Identified peptides: AAVFNLMGTAPGEGLLSAGGLPR, ARLEEGYSEAITFSEMR, DMTPDAK, EHAFADR, ELVEDVK, FSHIDIR, FWMQTLDGEK, FWMQTLDGEKITDSATFAGTAQR, GTLSVVGDTPQR, HAGDAASYAR, HTFSAR, IEAGTAHLDLFAR, ITDSATFAGTAQR, KTYPGDDEGTAWR, LDGSFEHDLK, LDGSFEHDLKQSGQGTLTVGTTR, LEEGYSEAITFSEMR, LEVMQQAK, LGLEFFSTR, LITMRPQCGEIIANAMQTHFFR, LLAHGFDGEIR, LLQANPDADIGFLSYR, LLQANPDADIGFLSYRD, LQWLLTER, MQMVDTLNLR, NSPILGK, PQCGEIIANAMQTHFFR, QALPNLHDGAEACGLTPAR, QQAAYGFEVAK, QQAAYGFEVAKPIR, QSGQGTLTVGTTR, STSTLSPGEIDAMR, TFLAER, TGIMYQPVMR, TLLEKPTLAER, TLRDMTPDAK, TYPGDDEGTAWR, VSLHHDGLSVTPDNVFAR" figure legend:Dataset S8|author-confidence:0.45 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:sGGOnGMTrmj+zBxQDv198G4IvIk882 - intact-crc:A2AFC39D420DAFC6 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72G56 uniprotkb:Q72CF4 intact:EBI-10066976|ensemblbacteria:AAS94488 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:q72g56_desvh(display_long)|uniprotkb:DVU_0004(locus name)|uniprotkb:gyrA(gene name)|psi-mi:gyrA(display_short) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091206 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002205(DNA topoisomerase, type IIA, subunit A or C-terminal)|interpro:IPR005743(DNA gyrase, subunit A)|interpro:IPR006691(DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel)|interpro:IPR013757(DNA topoisomerase, type IIA, subunit A, alpha-helical)|interpro:IPR013758(DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta)|interpro:IPR013760(DNA topoisomerase, type IIA, central)|refseq:YP_009229.1|refseq:WP_010937315.1|ensemblbacteria:AAS94488(transcript)|ensemblbacteria:DVU_0004(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003918"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005694"(chromosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006265"(DNA topological change)|interpro:IPR035516|entrezgene/locuslink:2794973(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.56 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:y0l6ztLMSiOKp1NvD9LqUdIEm3g882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:96E36E87EF5C36B7|rigid:EmxcFzC3pXmq9ZFpV8bdcJ1rtQk false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q725M7 uniprotkb:Q727C7 intact:EBI-10066303|ensemblbacteria:AAS97712 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:rpoz_desvh(display_long)|uniprotkb:RNA polymerase omega subunit(gene name synonym)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:DVU_3242(locus name)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091155 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|refseq:YP_012452.1|refseq:WP_010940500.1|ensemblbacteria:AAS97712(transcript)|ensemblbacteria:DVU_3242(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR036161 interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.72 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:O6sSrgt2kCmVvFu06S0wwA/xCy4882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:5E88B65371171BBE|rigid:xRMC3JozB6jI+b4dye81EBSiVK0 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72FB7 uniprotkb:Q72C30 intact:EBI-10070463|ensemblbacteria:AAS94780 intact:EBI-10069217|ensemblbacteria:AAS95932 psi-mi:q72fb7_desvh(display_long)|uniprotkb:DVU_0297(locus name) psi-mi:ispdf_desvh(display_long)|uniprotkb:ispD(gene name synonym)|uniprotkb:DVU_1454(locus name)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091254 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009521.1|interpro:IPR032587|ensemblbacteria:AAS94780(transcript)|ensemblbacteria:DVU_0297(gene)|entrezgene/locuslink:2795181(identity) interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|interpro:IPR029044|refseq:YP_010673.1|refseq:WP_010938747.1|ensemblbacteria:AAS95932(transcript)|ensemblbacteria:DVU_1454(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|interpro:IPR034683|interpro:IPR036571 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.41 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:z4RK5lQYLK87xG2hQL8d5FK/zPY882 rogid:09vx9flKicV2MNGXlhhB263lymE882 intact-crc:6E91B74EC761E14A|rigid:u5NtrpMPJVe6489VsRQb59t+m+4 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q727C7 uniprotkb:Q72G56 intact:EBI-10066295|ensemblbacteria:AAS97400 intact:EBI-10066976|ensemblbacteria:AAS94488 psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:q72g56_desvh(display_long)|uniprotkb:DVU_0004(locus name)|uniprotkb:gyrA(gene name)|psi-mi:gyrA(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091215 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034 interpro:IPR002205(DNA topoisomerase, type IIA, subunit A or C-terminal)|interpro:IPR005743(DNA gyrase, subunit A)|interpro:IPR006691(DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel)|interpro:IPR013757(DNA topoisomerase, type IIA, subunit A, alpha-helical)|interpro:IPR013758(DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta)|interpro:IPR013760(DNA topoisomerase, type IIA, central)|refseq:YP_009229.1|refseq:WP_010937315.1|ensemblbacteria:AAS94488(transcript)|ensemblbacteria:DVU_0004(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003918"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005694"(chromosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006265"(DNA topological change)|interpro:IPR035516|entrezgene/locuslink:2794973(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.30 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 rogid:y0l6ztLMSiOKp1NvD9LqUdIEm3g882 intact-crc:834A31C867B8AD78|rigid:KztdCToKnRoweSZvd7+7th1gALY false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72FF3 uniprotkb:Q72EV7 intact:EBI-10067996|ensemblbacteria:AAS94744 intact:EBI-10091224|ensemblbacteria:AAS94944 psi-mi:q72ff3_desvh(display_long)|uniprotkb:DVU_0261(locus name) psi-mi:q72ev7_desvh(display_long)|uniprotkb:DVU_0461(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091227 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_009485.1|refseq:WP_010937570.1|ensemblbacteria:AAS94744(transcript)|ensemblbacteria:DVU_0261(gene)|entrezgene/locuslink:2794103(identity) interpro:IPR002812(3-dehydroquinate synthase, prokaryotic-type)|refseq:YP_009685.1|refseq:WP_010937768.1|ensemblbacteria:AAS94944(transcript)|ensemblbacteria:DVU_0461(gene)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016491"(oxidoreductase activity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.33 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:DPmcT0m1/bzdzacQUAw3qCATXoM882 rogid:mwofksyiY4DfvShUI1oibskQqkI882 intact-crc:F0E08B159DA7902A|rigid:511gtn52q2wF9MHLfY6WgRdixBc false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72CM6 uniprotkb:Q72FF3 intact:EBI-10066180|ensemblbacteria:AAS95735 intact:EBI-10067996|ensemblbacteria:AAS94744 psi-mi:q72cm6_desvh(display_long)|uniprotkb:DVU_1257(locus name) psi-mi:q72ff3_desvh(display_long)|uniprotkb:DVU_0261(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091236 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_010476.1|refseq:WP_010938553.1|ensemblbacteria:AAS95735(transcript)|ensemblbacteria:DVU_1257(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979 interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_009485.1|refseq:WP_010937570.1|ensemblbacteria:AAS94744(transcript)|ensemblbacteria:DVU_0261(gene)|entrezgene/locuslink:2794103(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.41 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:ruXcKfPiOxTsYJSnCzXA90m2O+o882 rogid:DPmcT0m1/bzdzacQUAw3qCATXoM882 intact-crc:0329139465C5F3C2|rigid:6TWEK0p1AauXp/zng1V6r9CTT3I false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72FF3 uniprotkb:Q726K3 intact:EBI-10067996|ensemblbacteria:AAS94744 intact:EBI-10068003|ensemblbacteria:AAS97575 psi-mi:q72ff3_desvh(display_long)|uniprotkb:DVU_0261(locus name) psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091245 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_009485.1|refseq:WP_010937570.1|ensemblbacteria:AAS94744(transcript)|ensemblbacteria:DVU_0261(gene)|entrezgene/locuslink:2794103(identity) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.66 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:DPmcT0m1/bzdzacQUAw3qCATXoM882 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 intact-crc:344B4320EEB51319|rigid:LQgp1Jg+E99vqo/UkipyBkTOc/0 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72F92 uniprotkb:Q72ER6 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10065670|ensemblbacteria:AAS94985 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:pnp_desvh(display_long)|uniprotkb:Polynucleotide phosphorylase(gene name synonym)|uniprotkb:DVU_0503(locus name)|uniprotkb:pnp(gene name)|psi-mi:pnp(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091263 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR003029(S1, RNA binding)|interpro:IPR004087(K Homology)|interpro:IPR004088(K Homology, type 1)|interpro:IPR012162(Polyribonucleotide nucleotidyltransferase)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR015847(Exoribonuclease, phosphorolytic domain 2)|interpro:IPR015848(Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type)|interpro:IPR020568|interpro:IPR022967|interpro:IPR027408|refseq:YP_009726.1|refseq:WP_010937809.1|ensemblbacteria:AAS94985(transcript)|ensemblbacteria:DVU_0503(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003723"(RNA binding)|go:"GO:0004654"(polyribonucleotide nucleotidyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006396"(RNA processing)|go:"GO:0006402"(mRNA catabolic process)|interpro:IPR036345|interpro:IPR036612 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.63 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2015/01/19 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:zmbOa0wmOUU+huiyk2Ug8Pm0pg0882 intact-crc:FB844093399461E5|rigid:2hR5YUHJG+tdGj8CgdXrGf+7mUE false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72E04 uniprotkb:Q72F92 intact:EBI-10070597|ensemblbacteria:AAS95255 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091272 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121 interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.84 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:2D7962402CC983CB|rigid:TXe7R4bJ4EKAGlDPS+IBGR07OAk false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P61940 uniprotkb:P45574 intact:EBI-10065097|ensemblbacteria:AAS95676 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091281 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467 ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.28 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 intact-crc:B77D2593D586D072|rigid:U2Jwx8i6VfBmSmhMCb6xpKRbM6s false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EV7 uniprotkb:Q72B01 intact:EBI-10091224|ensemblbacteria:AAS94944 intact:EBI-10068511|ensemblbacteria:AAS96315 psi-mi:q72ev7_desvh(display_long)|uniprotkb:DVU_0461(locus name) psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091344 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002812(3-dehydroquinate synthase, prokaryotic-type)|refseq:YP_009685.1|refseq:WP_010937768.1|ensemblbacteria:AAS94944(transcript)|ensemblbacteria:DVU_0461(gene)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|entrezgene/locuslink:2794474(identity) interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.26 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:mwofksyiY4DfvShUI1oibskQqkI882 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 intact-crc:46FB59E3C3CE2443|rigid:0GbFEalTv8YPtthuyq0zDGVfcjI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AT3 uniprotkb:Q72EV8 intact:EBI-10068534|ensemblbacteria:AAS96383 intact:EBI-10071329|ensemblbacteria:AAS94943 psi-mi:q72at3_desvh(display_long)|uniprotkb:DVU_1907(locus name)|uniprotkb:ugd(gene name)|psi-mi:ugd(display_short) psi-mi:q72ev8_desvh(display_long)|uniprotkb:DVU_0460(locus name)|uniprotkb:aroA'(gene name)|psi-mi:aroA'(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091335 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028357|refseq:YP_011124.1|refseq:WP_010939193.1|ensemblbacteria:AAS96383(transcript)|ensemblbacteria:DVU_1907(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0003979"(UDP-glucose 6-dehydrogenase activity)|go:"GO:0006065"(UDP-glucuronate biosynthetic process)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291 interpro:IPR041720|interpro:IPR002915(Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR010210(Predicted phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009684.1|refseq:WP_010937767.1|ensemblbacteria:AAS94943(transcript)|ensemblbacteria:DVU_0460(gene)|go:"GO:0004332"(fructose-bisphosphate aldolase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016744"(transketolase or transaldolase activity)|go:"GO:0016836"(hydro-lyase activity)|entrezgene/locuslink:2794473(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.95 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:DlaZgne2xG/LcOH7et/EfWEYUd0882 rogid:jMWmDYStvbIlwq4hmTwf4dNv1ps882 intact-crc:01292E9F6985F82B|rigid:jju+uOSPY4DWSNHKpMP2XV8GZBk false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72F06 uniprotkb:Q72EZ0 intact:EBI-10071594|ensemblbacteria:AAS94895 intact:EBI-10070754|ensemblbacteria:AAS94911 psi-mi:q72f06_desvh(display_long)|uniprotkb:DVU_0412(locus name) psi-mi:q72ez0_desvh(display_long)|uniprotkb:DVU_0428(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091326 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003148(Regulator of K+ conductance, N-terminal)|interpro:IPR006037(Regulator of K+ conductance, C-terminal)|refseq:YP_009636.1|refseq:WP_010937719.1|ensemblbacteria:AAS94895(transcript)|ensemblbacteria:DVU_0412(gene)|go:"GO:0006813"(potassium ion transport)|go:"GO:0008324"(cation transmembrane transporter activity)|interpro:IPR036291|interpro:IPR036721|entrezgene/locuslink:2795175(identity) interpro:IPR007138(Antibiotic biosynthesis monooxygenase)|interpro:IPR011008(Dimeric alpha-beta barrel)|refseq:YP_009652.1|refseq:WP_010937735.1|ensemblbacteria:AAS94911(transcript)|ensemblbacteria:DVU_0428(gene) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.72 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:yKkRps0fmkcsje/d3aYXrnpKbSU882 rogid:OIb8nM6Sf+27ClVw9CgHj1d98E4882 intact-crc:3CB962A7542B55E8|rigid:VwFoT160vffng3yVqo8zinzI8fI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P61940 uniprotkb:P45575 intact:EBI-10065097|ensemblbacteria:AAS95676 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091290 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467 ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.31 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:E3E3EBCE5E9F0D24|rigid:FAp9GhzWkIv1b6TwMdGTTM23jJI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AS3 uniprotkb:P45575 intact:EBI-9012330 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091299 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.27 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:A2B9148876C15CCA|rigid:KfuoQUudr7y+h0YthHkeTLB9gIo false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P45573 uniprotkb:P45575 intact:EBI-9017020|ensemblbacteria:AAS97248 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091308 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072 ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.90 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:9C5CEFA614FDCD71|rigid:8cd7/HEQdtXFDA2FjQM2cabg3AQ false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q729Y2 uniprotkb:Q72EV7 intact:EBI-10090232|ensemblbacteria:AAS96688 intact:EBI-10091224|ensemblbacteria:AAS94944 psi-mi:q729y2_desvh(display_long)|uniprotkb:DVU_2215(locus name) psi-mi:q72ev7_desvh(display_long)|uniprotkb:DVU_0461(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091353 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_011428.1|refseq:WP_010939490.1|ensemblbacteria:AAS96688(transcript)|ensemblbacteria:DVU_2215(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979 interpro:IPR002812(3-dehydroquinate synthase, prokaryotic-type)|refseq:YP_009685.1|refseq:WP_010937768.1|ensemblbacteria:AAS94944(transcript)|ensemblbacteria:DVU_0461(gene)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|entrezgene/locuslink:2794474(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.26 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7BtJC1L8IG9Liq+eH+epiZMJ13s882 rogid:mwofksyiY4DfvShUI1oibskQqkI882 intact-crc:67CE6479E4540AB4|rigid:bNTnmcNiOt397S3haDV3v9bk/8E false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q726K3 uniprotkb:Q72EV7 intact:EBI-10068003|ensemblbacteria:AAS97575 intact:EBI-10091224|ensemblbacteria:AAS94944 psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:q72ev7_desvh(display_long)|uniprotkb:DVU_0461(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091362 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737 interpro:IPR002812(3-dehydroquinate synthase, prokaryotic-type)|refseq:YP_009685.1|refseq:WP_010937768.1|ensemblbacteria:AAS94944(transcript)|ensemblbacteria:DVU_0461(gene)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|entrezgene/locuslink:2794474(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.27 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 rogid:mwofksyiY4DfvShUI1oibskQqkI882 intact-crc:858B2105A992B03C|rigid:jPmW+/a0fOk8zgfrqqemzxUmBYg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72C20 uniprotkb:Q72F07 intact:EBI-10069128|ensemblbacteria:AAS95942 intact:EBI-10069134|ensemblbacteria:AAS94894 psi-mi:q72c20_desvh(display_long)|uniprotkb:DVU_1464(locus name) psi-mi:q72f07_desvh(display_long)|uniprotkb:DVU_0411(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091317 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002201(Glycosyl transferase, family 9)|refseq:YP_010683.1|refseq:WP_010938757.1|ensemblbacteria:AAS95942(transcript)|ensemblbacteria:DVU_1464(gene)|go:"GO:0016757"(glycosyltransferase activity) interpro:IPR002201(Glycosyl transferase, family 9)|refseq:YP_009635.1|refseq:WP_010937718.1|ensemblbacteria:AAS94894(transcript)|ensemblbacteria:DVU_0411(gene)|go:"GO:0016757"(glycosyltransferase activity)|entrezgene/locuslink:2793712(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.30 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:eemKulukswF4ohayuPdhIq8wrGQ882 rogid:ROZY+6+41AsAkCQGGPndYqv/J7c882 intact-crc:BAE8363B448DD76D|rigid:cm4CRtTZr6Wtnqx8TwcAdOUYqjg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AY3 uniprotkb:Q72EH0 intact:EBI-10090649|ensemblbacteria:AAS96333 intact:EBI-10091420|ensemblbacteria:AAS95089 psi-mi:q72ay3_desvh(display_long)|uniprotkb:DVU_1857(locus name) psi-mi:q72eh0_desvh(display_long)|uniprotkb:DVU_0608(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091428 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011074.1|refseq:WP_010939143.1|ensemblbacteria:AAS96333(transcript)|ensemblbacteria:DVU_1857(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_009830.1|interpro:IPR033479|refseq:WP_010937911.1|ensemblbacteria:AAS95089(transcript)|ensemblbacteria:DVU_0608(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2794094(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.73 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:Q42nqmc4YSWut8zyqWjVgYZqcoE882 rogid:1+Rqr7CrOOzA+HI7tv/CfhT6ov0882 intact-crc:AA7A0AE452BC298F|rigid:M0gIZC/A1CKqfppKg91iQPVKjCs false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EH0 uniprotkb:Q72CW4 intact:EBI-10091420|ensemblbacteria:AAS95089 intact:EBI-10090642|ensemblbacteria:AAS95647 psi-mi:q72eh0_desvh(display_long)|uniprotkb:DVU_0608(locus name) psi-mi:q72cw4_desvh(display_long)|uniprotkb:DVU_1169(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091416 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_009830.1|interpro:IPR033479|refseq:WP_010937911.1|ensemblbacteria:AAS95089(transcript)|ensemblbacteria:DVU_0608(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2794094(identity) refseq:WP_010938466.1|interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|refseq:YP_010388.1|ensemblbacteria:AAS95647(transcript)|ensemblbacteria:DVU_1169(gene)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.28 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:1+Rqr7CrOOzA+HI7tv/CfhT6ov0882 rogid:Hbv+dhABBjRf78c9JxkzJX5A9DI882 intact-crc:10614CAF0519499B|rigid:w4TkxWRCEcLXoU5CBbjn4dzt4Bo false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EN7 uniprotkb:Q72DI4 intact:EBI-10071083|ensemblbacteria:AAS95022 intact:EBI-10089754|ensemblbacteria:AAS95425 psi-mi:q72en7_desvh(display_long)|uniprotkb:DVU_0540(locus name) psi-mi:q72di4_desvh(display_long)|uniprotkb:DVU_0945(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091407 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR009056(Cytochrome c, monohaem)|interpro:IPR021796|refseq:YP_009763.1|refseq:WP_010937846.1|ensemblbacteria:AAS95022(transcript)|ensemblbacteria:DVU_0540(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016021"(integral component of membrane)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036097|interpro:IPR036890|entrezgene/locuslink:2795577(identity) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR013656(PAS fold-4)|interpro:IPR021796|refseq:YP_010166.1|refseq:WP_010938244.1|ensemblbacteria:AAS95425(transcript)|ensemblbacteria:DVU_0945(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|interpro:IPR036097|interpro:IPR036890 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.57 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:q3M9u+/B53O7a3lBlPKb6sver40882 rogid:1/cK7NfeR/CEV66HRfZAvwD0xOM882 intact-crc:DA9C617414828E10|rigid:hT5SlZVLslFKuK5xjLw90FEP2Dw false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EP8 uniprotkb:Q729A8 intact:EBI-10071268|ensemblbacteria:AAS95003 intact:EBI-10067088|ensemblbacteria:AAS96916 psi-mi:csra_desvh(display_long)|uniprotkb:DVU_0521(locus name)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short) psi-mi:q729a8_desvh(display_long)|uniprotkb:DVU_2444(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091389 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003751(Carbon storage regulator)|refseq:YP_009744.1|refseq:WP_010937827.1|ensemblbacteria:AAS95003(transcript)|ensemblbacteria:DVU_0521(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|interpro:IPR036107|entrezgene/locuslink:2794803(identity) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011656.1|refseq:WP_010939715.1|ensemblbacteria:AAS96916(transcript)|ensemblbacteria:DVU_2444(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.30 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:AsAjPZrpB/3bwpkPMxPHaE0LU7c882 rogid:uLsLwVWIWtrawkoz/HUPrhjN3kc882 intact-crc:FBF943B16AC5545C|rigid:uwrliOosWPVQo+r+/ryrqwGZIbA false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EP8 uniprotkb:Q729N0 intact:EBI-10071268|ensemblbacteria:AAS95003 intact:EBI-10071633|ensemblbacteria:AAS96793 psi-mi:csra_desvh(display_long)|uniprotkb:DVU_0521(locus name)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short) psi-mi:q729n0_desvh(display_long)|uniprotkb:DVU_2320(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091380 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003751(Carbon storage regulator)|refseq:YP_009744.1|refseq:WP_010937827.1|ensemblbacteria:AAS95003(transcript)|ensemblbacteria:DVU_0521(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|interpro:IPR036107|entrezgene/locuslink:2794803(identity) interpro:IPR002830(Carboxylyase-related)|refseq:YP_011533.1|ensemblbacteria:AAS96793(transcript)|ensemblbacteria:DVU_2320(gene)|go:"GO:0016831"(carboxy-lyase activity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.58 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:AsAjPZrpB/3bwpkPMxPHaE0LU7c882 rogid:tEXoCvCaoNTr2ow+PSwYDIahyWw882 intact-crc:FFEA2763BD42E092|rigid:Ps4oiLgndiFjeJvaUrqL/GCaFiA false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AB5 uniprotkb:Q72EP8 intact:EBI-10071272|ensemblbacteria:AAS96555 intact:EBI-10071268|ensemblbacteria:AAS95003 psi-mi:q72ab5_desvh(display_long)|uniprotkb:DVU_2082(locus name) psi-mi:csra_desvh(display_long)|uniprotkb:DVU_0521(locus name)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091371 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011295.1|refseq:WP_010939359.1|ensemblbacteria:AAS96555(transcript)|ensemblbacteria:DVU_2082(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187 interpro:IPR003751(Carbon storage regulator)|refseq:YP_009744.1|refseq:WP_010937827.1|ensemblbacteria:AAS95003(transcript)|ensemblbacteria:DVU_0521(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|interpro:IPR036107|entrezgene/locuslink:2794803(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.98 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:9Qv+5NMFmhdNFWdT0bYugLJEInA882 rogid:AsAjPZrpB/3bwpkPMxPHaE0LU7c882 intact-crc:2CDC9601BB79F21C|rigid:l++g/nHxjn6pfw3Klqqbkhd1Hb4 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EP7 uniprotkb:Q729N0 intact:EBI-10067084|ensemblbacteria:AAS95004 intact:EBI-10071633|ensemblbacteria:AAS96793 psi-mi:fliw_desvh(display_long)|uniprotkb:DVU_0522(locus name)|uniprotkb:fliW(gene name)|psi-mi:fliW(display_short) psi-mi:q729n0_desvh(display_long)|uniprotkb:DVU_2320(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091398 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|refseq:YP_009745.1|refseq:WP_010937828.1|ensemblbacteria:AAS95004(transcript)|ensemblbacteria:DVU_0522(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|entrezgene/locuslink:2794804(identity) interpro:IPR002830(Carboxylyase-related)|refseq:YP_011533.1|ensemblbacteria:AAS96793(transcript)|ensemblbacteria:DVU_2320(gene)|go:"GO:0016831"(carboxy-lyase activity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.58 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:c5C5ClnCJ+W3GJvhTC/v7zqusRE882 rogid:tEXoCvCaoNTr2ow+PSwYDIahyWw882 intact-crc:33B5BEB66A5BB1A0|rigid:3w4pUU5aH20Ak8tVN9d1IZv1fMw false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72AX1 uniprotkb:Q72EH0 intact:EBI-10072129|ensemblbacteria:AAS96345 intact:EBI-10091420|ensemblbacteria:AAS95089 psi-mi:q72ax1_desvh(display_long)|uniprotkb:DVU_1869(locus name) psi-mi:q72eh0_desvh(display_long)|uniprotkb:DVU_0608(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091437 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011086.1|refseq:WP_010939155.1|ensemblbacteria:AAS96345(transcript)|ensemblbacteria:DVU_1869(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965 interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_009830.1|interpro:IPR033479|refseq:WP_010937911.1|ensemblbacteria:AAS95089(transcript)|ensemblbacteria:DVU_0608(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2794094(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.40 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:zODmBSiePXYgrHWiAR5ouEjjwzU882 rogid:1+Rqr7CrOOzA+HI7tv/CfhT6ov0882 intact-crc:D05AF2F695FD718A|rigid:o2sR8bQ3cz8nVy4hLWWBwmUW6vA false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EH0 uniprotkb:Q726M4 intact:EBI-10091420|ensemblbacteria:AAS95089 intact:EBI-10090892|ensemblbacteria:AAS97553 psi-mi:q72eh0_desvh(display_long)|uniprotkb:DVU_0608(locus name) psi-mi:q726m4_desvh(display_long)|uniprotkb:DVU_3082(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091464 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_009830.1|interpro:IPR033479|refseq:WP_010937911.1|ensemblbacteria:AAS95089(transcript)|ensemblbacteria:DVU_0608(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2794094(identity) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR021796|refseq:YP_012293.1|ensemblbacteria:AAS97553(transcript)|ensemblbacteria:DVU_3082(gene)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.40 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:1+Rqr7CrOOzA+HI7tv/CfhT6ov0882 rogid:KoNf9wZAqg7aOZsQjfv7u7clTDk882 intact-crc:A0FFD61E2B4FB262|rigid:/gm1RGRCsqYo9FwNSja+sEYu4QU false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72DZ9 uniprotkb:Q72E04 intact:EBI-10070604|ensemblbacteria:AAS95260 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:q72dz9_desvh(display_long)|uniprotkb:DVU_0780(locus name) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091491 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|interpro:IPR028987|refseq:YP_010001.1|ensemblbacteria:AAS95260(transcript)|ensemblbacteria:DVU_0780(gene)|go:"GO:0015078"(proton transmembrane transporter activity)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)") interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121|entrezgene/locuslink:2794846(identity) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.32 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:iawHw4iYKJBHw2AYajd2/PQMxLU882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 intact-crc:FF568704B41FCFAE|rigid:7s4SUjS70NUItXtYl93znQBZJL0 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EH0 uniprotkb:Q729P1 intact:EBI-10091420|ensemblbacteria:AAS95089 intact:EBI-10090673|ensemblbacteria:AAS96782 psi-mi:q72eh0_desvh(display_long)|uniprotkb:DVU_0608(locus name) psi-mi:q729p1_desvh(display_long)|uniprotkb:DVU_2309(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091455 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_009830.1|interpro:IPR033479|refseq:WP_010937911.1|ensemblbacteria:AAS95089(transcript)|ensemblbacteria:DVU_0608(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2794094(identity) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_011522.1|refseq:WP_010939584.1|interpro:IPR033479|ensemblbacteria:AAS96782(transcript)|ensemblbacteria:DVU_2309(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.73 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:1+Rqr7CrOOzA+HI7tv/CfhT6ov0882 rogid:bUHYBKQ37CipQPNHaNUUb2ii9vk882 intact-crc:71652CD36D0317DC|rigid:TcQt8eESKhCtQwXcDa5Mmuiq7C8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72EH0 uniprotkb:Q729Q4 intact:EBI-10091420|ensemblbacteria:AAS95089 intact:EBI-10090657|ensemblbacteria:AAS96768 psi-mi:q72eh0_desvh(display_long)|uniprotkb:DVU_0608(locus name) psi-mi:q729q4_desvh(display_long)|uniprotkb:DVU_2295(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091446 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR029151|refseq:YP_009830.1|interpro:IPR033479|refseq:WP_010937911.1|ensemblbacteria:AAS95089(transcript)|ensemblbacteria:DVU_0608(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2794094(identity) interpro:IPR033479|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR004090(Chemotaxis methyl-accepting receptor)|interpro:IPR013656(PAS fold-4)|interpro:IPR029151|refseq:YP_011508.1|refseq:WP_010939570.1|ensemblbacteria:AAS96768(transcript)|ensemblbacteria:DVU_2295(gene)|go:"GO:0004673"(protein histidine kinase activity)|go:"GO:0004888"(transmembrane signaling receptor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965 psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.59 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:1+Rqr7CrOOzA+HI7tv/CfhT6ov0882 rogid:l39CDKQKabDUnGqvZd+IQ42BVPI882 intact-crc:70D135B83B2B0B95|rigid:/2di5cuq07lVQor+rKh1+OB1JqQ false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72E84 uniprotkb:Q72CJ6 intact:EBI-6974672|ensemblbacteria:AAS95175|intact:MINT-8183932 intact:EBI-10069519|ensemblbacteria:AAS95765 psi-mi:qrcb_desvh(display_long)|uniprotkb:qrcB(gene name)|psi-mi:qrcB(display_short)|uniprotkb:Quinone reductase complex subunit B(gene name synonym)|uniprotkb:"Type I cytochrome c3:menaquinone oxidoreductase subunit B"(gene name synonym)|uniprotkb:DVU_0694(locus name) psi-mi:q72cj6_desvh(display_long)|uniprotkb:DVU_1287(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091473 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS95175(transcript)|ensemblbacteria:DVU_0694(gene)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR006311(Twin-arginine translocation pathway signal)|refseq:YP_009916.1|interpro:IPR006657(Molydopterin dinucleotide-binding region)|refseq:WP_010937997.1|entrezgene/locuslink:2793634(identity) interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR017896|interpro:IPR017900|refseq:YP_010506.1|refseq:WP_010938583.1|ensemblbacteria:AAS95765(transcript)|ensemblbacteria:DVU_1287(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Dataset S8|author-confidence:0.47 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:PYdLc8tPlD4j/Xl5YyQYtlEO9Gc882 rogid:XlDLnTxBygAuN9i6MSdRVm1tjzw882 intact-crc:5911AEF2D9563094|rigid:9YzPio9OUTHlg3cuUUKfGqsgyL8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q72E27 uniprotkb:Q72CP5 intact:EBI-10070734|ensemblbacteria:AAS95232 intact:EBI-10088725|ensemblbacteria:AAS95716 psi-mi:q72e27_desvh(display_long)|uniprotkb:DVU_0752(locus name) psi-mi:q72cp5_desvh(display_long)|uniprotkb:DVU_1238(locus name) psi-mi:"MI:0363"(inferred by author) Shatsky et al. (2016) pubmed:unassigned1256 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:1110"(predicted interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-10091482 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001638(Bacterial extracellular solute-binding protein, family 3)|refseq:YP_009973.1|refseq:WP_010938053.1|ensemblbacteria:AAS95232(transcript)|ensemblbacteria:DVU_0752(gene)|entrezgene/locuslink:2794970(identity) interpro:IPR001320(Ionotropic glutamate receptor)|interpro:IPR001638(Bacterial extracellular solute-binding protein, family 3)|refseq:YP_010457.1|refseq:WP_010938534.1|ensemblbacteria:AAS95716(transcript)|ensemblbacteria:DVU_1238(gene)|go:"GO:0015276"(ligand-gated ion channel activity)|go:"GO:0016020"(membrane) psi-mi:"MI:0469"(intact) - - figure legend:Dataset S8|author-confidence:0.41 taxid:-5(in silico)|taxid:-5(in silico) - 2015/01/15 2017/02/06 rogid:mjaNEmAJTS6Wm19t0RvVE71Y4IY882 rogid:45X7zMkBy10o1CmZwSFfWz6GXSM882 intact-crc:2C07A78A8AE3E62E|rigid:V1poG1Ktmw7ibzYXPwiiVLfUgRk false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant)