#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:P30820 uniprotkb:Q72D85 intact:EBI-10064790|ensemblbacteria:AAS94503 intact:EBI-10064794|ensemblbacteria:AAS95524 psi-mi:nigy_desvh(display_long)|uniprotkb:DVU_0019(locus name)|uniprotkb:ngr(gene name)|psi-mi:ngr(display_short) psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064787|imex:IM-22740-1 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003251(Rubrerythrin)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR024934|rcsb pdb:1YUX|rcsb pdb:1YUZ|rcsb pdb:1YV1|refseq:YP_009244.1|refseq:WP_010937330.1|ensemblbacteria:AAS94503(transcript)|ensemblbacteria:DVU_0019(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|entrezgene/locuslink:2794280(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.90" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:S4R34siXiM2fvLxumMvd4v5yp6E882 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 intact-crc:A90D2AC14C88AD2A|rigid:Skw1AfOyLbfOZHYTOm4zVFGpyRc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CN2 uniprotkb:P45573 intact:EBI-10064808|ensemblbacteria:AAS95729 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:q72cn2_desvh(display_long)|uniprotkb:DVU_1251(locus name) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064811|imex:IM-22740-2 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010470.1|refseq:WP_010938547.1|ensemblbacteria:AAS95729(transcript)|ensemblbacteria:DVU_1251(gene)|entrezgene/locuslink:2795032(identity) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072|entrezgene/locuslink:2796326(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:543MQPkYMIzuko87WvT+PJxPUTY882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:1618095F79EF9C23|rigid:UDGhvPz3C3mKN3hNR4/ov18KkaQ false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45574 uniprotkb:Q726A0 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 intact:EBI-10064827|ensemblbacteria:AAS97743 psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:q726a0_desvh(display_long)|uniprotkb:DVU_3273(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064824|imex:IM-22740-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) refseq:YP_012483.1|refseq:WP_010940531.1|ensemblbacteria:AAS97743(transcript)|ensemblbacteria:DVU_3273(gene)|entrezgene/locuslink:2795997(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.76" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+5zB49by4Md3smwTEj+tXy138ms882 rogid:y33nk4pbVYiddUhfLrewkguhBjI882 intact-crc:B586937D03A4EE36|rigid:ohVYml7UdJgBK4ui+kCJLZU+Yos false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45574 uniprotkb:P45575 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064824|imex:IM-22740-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+5zB49by4Md3smwTEj+tXy138ms882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:B586937D03A4EE36|rigid:ohVYml7UdJgBK4ui+kCJLZU+Yos false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45574 uniprotkb:P45573 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064824|imex:IM-22740-3 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072|entrezgene/locuslink:2796326(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.90" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+5zB49by4Md3smwTEj+tXy138ms882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:B586937D03A4EE36|rigid:ohVYml7UdJgBK4ui+kCJLZU+Yos false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45575 uniprotkb:Q726A0 intact:EBI-9016987|ensemblbacteria:AAS94886 intact:EBI-10064827|ensemblbacteria:AAS97743 psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:q726a0_desvh(display_long)|uniprotkb:DVU_3273(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064868|imex:IM-22740-5 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) refseq:YP_012483.1|refseq:WP_010940531.1|ensemblbacteria:AAS97743(transcript)|ensemblbacteria:DVU_3273(gene)|entrezgene/locuslink:2795997(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 rogid:y33nk4pbVYiddUhfLrewkguhBjI882 intact-crc:451EC79E6B1815BE|rigid:KmKUZBlxZorTL8vE3tIIOq6Qgv4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45575 uniprotkb:P45574 intact:EBI-9016987|ensemblbacteria:AAS94886 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064868|imex:IM-22740-5 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 intact-crc:451EC79E6B1815BE|rigid:KmKUZBlxZorTL8vE3tIIOq6Qgv4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AX6 uniprotkb:P61666 intact:EBI-10064902|ensemblbacteria:AAS96340 intact:EBI-10064898|ensemblbacteria:AAS96126 psi-mi:q72ax6_desvh(display_long)|uniprotkb:DVU_1864(locus name) psi-mi:muts_desvh(display_long)|uniprotkb:DVU_1649(locus name)|uniprotkb:mutS(gene name)|psi-mi:mutS(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064905|imex:IM-22740-7 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_011081.1|refseq:WP_010939150.1|ensemblbacteria:AAS96340(transcript)|ensemblbacteria:DVU_1864(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793646(identity) interpro:IPR017261(DNA mismatch repair protein Msh6)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR005748(DNA mismatch repair protein MutS, type 1)|interpro:IPR007695(DNA mismatch repair protein MutS-like, N-terminal)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR007860(DNA mismatch repair protein MutS, connector)|interpro:IPR007861(DNA mismatch repair protein MutS, clamp)|interpro:IPR016151(DNA mismatch repair protein MutS, N-terminal)|interpro:IPR027417|refseq:YP_010867.1|refseq:WP_010938938.1|ensemblbacteria:AAS96126(transcript)|ensemblbacteria:DVU_1649(gene)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0030983"(mismatched DNA binding)|interpro:IPR036187|interpro:IPR036678|entrezgene/locuslink:2795920(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.96" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:n21OwmwqHiyRGMYLOFMYc5upF1E882 rogid:ZGZFw9d5v8YAmxpHTqSbp7xj76g882 intact-crc:AD7029C7ED3AF43E|rigid:gBtmunDSsVEFIXeNJ/bIN7uIaVE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P61687 uniprotkb:Q725P0 intact:EBI-10064924|ensemblbacteria:AAS96689 intact:EBI-10064921|ensemblbacteria:AAS97853 psi-mi:if12_desvh(display_long)|uniprotkb:infA-2(gene name synonym)|uniprotkb:DVU_2216(locus name)|uniprotkb:infA2(gene name)|psi-mi:infA2(display_short) psi-mi:zrap_desvh(display_long)|uniprotkb:DVU_3384(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064918|imex:IM-22740-8 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004368(Translation initiation factor IF-1)|interpro:IPR006196(S1, IF1 type)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|refseq:YP_011429.1|refseq:WP_010939491.1|ensemblbacteria:AAS96689(transcript)|ensemblbacteria:DVU_2216(gene)|go:"GO:0003743"(translation initiation factor activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019843"(rRNA binding)|go:"GO:0043022"(ribosome binding)|entrezgene/locuslink:2795363(identity) interpro:IPR025961|refseq:YP_012593.1|refseq:WP_010940639.1|ensemblbacteria:AAS97853(transcript)|ensemblbacteria:DVU_3384(gene)|entrezgene/locuslink:2796403(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.62" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:d+SSka/HT6apHg7R6tGN/XVDemI882 rogid:aahTrliPlvFc6eRkhIF45/jhJ0k882 intact-crc:DDE477E091BEBE1C|rigid:Zny4u4/Uw0JKuvEc3eriHjlVQMs false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62035 uniprotkb:Q72BM5 intact:EBI-10064948|ensemblbacteria:AAS96732 intact:EBI-10064938|ensemblbacteria:AAS96088 psi-mi:y2259_desvh(display_long)|uniprotkb:DVU_2259(locus name) psi-mi:q72bm5_desvh(display_long)|uniprotkb:"NAD(+) synthase [glutamine-hydrolyzing]"(gene name synonym)|uniprotkb:DVU_1610(locus name)|uniprotkb:nadE(gene name)|psi-mi:nadE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064942|imex:IM-22740-9 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|refseq:YP_011472.1|refseq:WP_010939534.1|ensemblbacteria:AAS96732(transcript)|ensemblbacteria:DVU_2259(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|entrezgene/locuslink:2794081(identity) interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|interpro:IPR003694(NAD+ synthase)|interpro:IPR014445("Glutamine-dependent NAD(+) synthetase, GAT region")|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR022310|refseq:YP_010829.1|refseq:WP_010938901.1|ensemblbacteria:AAS96088(transcript)|ensemblbacteria:DVU_1610(gene)|go:"GO:0003952"("NAD+ synthase (glutamine-hydrolyzing) activity")|go:"GO:0004359"(glutaminase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008795"(NAD+ synthase activity)|go:"GO:0009435"(NAD biosynthetic process)|interpro:IPR036526|entrezgene/locuslink:2796063(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:vwq31bMVKWxbxjQkLoWk21tInLI882 rogid:k4s4BfpX6SHtSSy2NSA4EAO8e6w882 intact-crc:929698EE1159ED2F|rigid:63+tWiuAB7PxX5KyCrVD/Aa+iZk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62035 uniprotkb:Q729V7 intact:EBI-10064948|ensemblbacteria:AAS96732 intact:EBI-10064945|ensemblbacteria:AAS96713 psi-mi:y2259_desvh(display_long)|uniprotkb:DVU_2259(locus name) psi-mi:q729v7_desvh(display_long)|uniprotkb:DVU_2240(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064942|imex:IM-22740-9 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|refseq:YP_011472.1|refseq:WP_010939534.1|ensemblbacteria:AAS96732(transcript)|ensemblbacteria:DVU_2259(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|entrezgene/locuslink:2794081(identity) interpro:IPR002821(Hydantoinase/oxoprolinase)|interpro:IPR008040(Hydantoinaseoxoprolinase, N-terminal)|refseq:YP_011453.1|refseq:WP_010939515.1|ensemblbacteria:AAS96713(transcript)|ensemblbacteria:DVU_2240(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR043129|entrezgene/locuslink:2795392(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.90" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:vwq31bMVKWxbxjQkLoWk21tInLI882 rogid:lY4GJvddii/woep18tcb6guNssA882 intact-crc:929698EE1159ED2F|rigid:63+tWiuAB7PxX5KyCrVD/Aa+iZk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P61779 uniprotkb:P62450 intact:EBI-10064985|ensemblbacteria:AAS94768 intact:EBI-10064978|ensemblbacteria:AAS94769 psi-mi:his5_desvh(display_long)|uniprotkb:IGP synthase subunit HisH(gene name synonym)|uniprotkb:ImGP synthase subunit HisH(gene name synonym)|uniprotkb:DVU_0285(locus name)|uniprotkb:hisH(gene name)|psi-mi:hisH(display_short)|uniprotkb:IGP synthase glutaminase subunit(gene name synonym) psi-mi:his6_desvh(display_long)|uniprotkb:IGP synthase cyclase subunit(gene name synonym)|uniprotkb:IGP synthase subunit HisF(gene name synonym)|uniprotkb:ImGP synthase subunit HisF(gene name synonym)|uniprotkb:DVU_0286(locus name)|uniprotkb:hisF(gene name)|psi-mi:hisF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064982|imex:IM-22740-11 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010139(Imidazole glycerol phosphate synthase, subunit H)|interpro:IPR017926|interpro:IPR029062|refseq:WP_010937594.1|refseq:YP_009509.1|ensemblbacteria:AAS94768(transcript)|ensemblbacteria:DVU_0285(gene)|go:"GO:0000107"(imidazoleglycerol-phosphate synthase activity)|go:"GO:0004359"(glutaminase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0000105"(histidine biosynthetic process)|entrezgene/locuslink:2796695(identity) interpro:IPR004651(Histidine biosynthesis, HisF)|interpro:IPR006062(Histidine biosynthesis)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009510.1|refseq:WP_010937595.1|ensemblbacteria:AAS94769(transcript)|ensemblbacteria:DVU_0286(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0000107"(imidazoleglycerol-phosphate synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0016829"(lyase activity)|entrezgene/locuslink:2793492(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:pkkcUYckOQc+xrA/m1VOG/2gNgM882 rogid:4xHW6/vARu+RwFf9UnBK9t2kzpI882 intact-crc:99FA4B5D5FEE7FAE|rigid:LEBuvdokMAtzZhpTep8V3HNN3lk false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q3V892 uniprotkb:Q72CA7 intact:EBI-10065060|ensemblbacteria:AAS95854 intact:EBI-10065053|ensemblbacteria:AAS95855 psi-mi:q3v892_desvh(display_long)|uniprotkb:DVU_1376(locus name)|uniprotkb:ilvB-2(gene name)|psi-mi:ilvB-2(display_short) psi-mi:q72ca7_desvh(display_long)|uniprotkb:DVU_1377(locus name)|uniprotkb:ilvN-2(gene name)|psi-mi:ilvN-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065057|imex:IM-22740-15 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938671.1|interpro:IPR000399(TPP-binding enzymes, conserved site)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR012000(Thiamine pyrophosphate enzyme, central region)|interpro:IPR012001(Thiamine pyrophosphate enzyme, N-terminal TPP binding region)|interpro:IPR012846(Acetolactate synthase, large subunit, biosynthetic)|interpro:IPR029035|interpro:IPR029061|refseq:YP_010595.1|ensemblbacteria:AAS95854(transcript)|ensemblbacteria:DVU_1376(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR039368|entrezgene/locuslink:2793509(identity) interpro:IPR027271|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR004789(Acetolactate synthase, small subunit)|interpro:IPR019455|refseq:YP_010596.1|refseq:WP_010938672.1|ensemblbacteria:AAS95855(transcript)|ensemblbacteria:DVU_1377(gene)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:1990610"(acetolactate synthase regulator activity)|interpro:IPR039557|entrezgene/locuslink:2793510(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.55" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jWGIJ+r0YmbjGCCXIdRHBctcW5g882 rogid:0awT/2/Pe5oYJCxJBOOmjKSh5Jk882 intact-crc:327C2CF915B8925E|rigid:yJOGtl4pqOpK6NQI29Gli3EJHvA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728E4 uniprotkb:Q06173 intact:EBI-10065036|ensemblbacteria:AAS97131 intact:EBI-10065032|ensemblbacteria:AAS96397 psi-mi:quec_desvh(display_long)|uniprotkb:"PreQ(0) synthase"(gene name synonym)|uniprotkb:Queuosine biosynthesis protein QueC(gene name synonym)|uniprotkb:DVU_2659(locus name)|uniprotkb:7-cyano-7-carbaguanine synthase(gene name synonym)|uniprotkb:queC(gene name)|psi-mi:queC(display_short) psi-mi:phns1_desvh(display_long)|uniprotkb:NiFe hydrogenlyase small chain 1(gene name synonym)|uniprotkb:hynB-1(gene name synonym)|uniprotkb:DVU_1921(locus name)|uniprotkb:hynB1(gene name)|psi-mi:hynB1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065040|imex:IM-22740-14 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR018317|refseq:YP_011871.1|refseq:WP_010939928.1|ensemblbacteria:AAS97131(transcript)|ensemblbacteria:DVU_2659(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0016879"(ligase activity, forming carbon-nitrogen bonds)|entrezgene/locuslink:2796226(identity) interpro:IPR001821([Ni-Fe]-hydrogenase, small subunit)|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR019546|interpro:IPR027394|refseq:YP_011138.1|refseq:WP_010939207.1|ensemblbacteria:AAS96397(transcript)|ensemblbacteria:DVU_1921(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0009375"(ferredoxin hydrogenase complex)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0047806"(cytochrome-c3 hydrogenase activity)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037024|interpro:IPR037148|entrezgene/locuslink:2793337(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.33" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:V6SiOR6/ll6acXuV1N+37UnVEp0882 rogid:3BEe8rX/dDoc5EUNj2EOk7FFMt0882 intact-crc:92D3DD7049CE10B6|rigid:nyCDXUA+8JkSB0oTUoh3Zhs22SY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62636 uniprotkb:Q72FF1 intact:EBI-10065018|ensemblbacteria:AAS96074 intact:EBI-10065012|ensemblbacteria:AAS94746 psi-mi:cheb1_desvh(display_long)|uniprotkb:DVU_1596(locus name)|uniprotkb:cheB1(gene name)|psi-mi:cheB1(display_short) psi-mi:q72ff1_desvh(display_long)|uniprotkb:DVU_0263(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065015|imex:IM-22740-13 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000673(Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR008248(Signal transduction response regulator, chemotaxis, CheB-like)|interpro:IPR011006(CheY-like)|refseq:YP_010815.1|refseq:WP_010938887.1|ensemblbacteria:AAS96074(transcript)|ensemblbacteria:DVU_1596(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006482"(protein demethylation)|go:"GO:0006935"(chemotaxis)|go:"GO:0008984"(protein-glutamate methylesterase activity)|go:"GO:0018277"(protein deamination)|go:"GO:0050568"(protein-glutamine glutaminase activity)|interpro:IPR035909|entrezgene/locuslink:2795951(identity) interpro:IPR002322(Cytochrome c, class III)|interpro:IPR020942|refseq:YP_009487.1|refseq:WP_010937572.1|ensemblbacteria:AAS94746(transcript)|ensemblbacteria:DVU_0263(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0020037"(heme binding)|interpro:IPR036280|entrezgene/locuslink:2795005(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:mUrxKDIfwhkXa0zZ/9UfcyNc9bw882 rogid:xmOcNn23gd8Wp1ItM6Nw67NQCfI882 intact-crc:2E7B2140F1DF4C5B|rigid:zlxm6Dy14a0mYihactAykn6xq94 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FN8 uniprotkb:Q3V893 intact:EBI-10065077|ensemblbacteria:AAS94659 intact:EBI-10065080|ensemblbacteria:AAS94843 psi-mi:q72fn8_desvh(display_long)|uniprotkb:DVU_0175(locus name) psi-mi:q3v893_desvh(display_long)|uniprotkb:DVU_0360(locus name)|uniprotkb:ilvB-1(gene name)|psi-mi:ilvB-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065074|imex:IM-22740-16 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937486.1|interpro:IPR001453(Molybdopterin binding)|interpro:IPR003814(Formylmethanofuran dehydrogenase, subunit E region)|refseq:YP_009400.1|interpro:IPR038987|ensemblbacteria:AAS94659(transcript)|ensemblbacteria:DVU_0175(gene)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0032324"(molybdopterin cofactor biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0061599"(molybdopterin molybdotransferase activity)|interpro:IPR036425|entrezgene/locuslink:2795625(identity) interpro:IPR000399(TPP-binding enzymes, conserved site)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR012000(Thiamine pyrophosphate enzyme, central region)|interpro:IPR012001(Thiamine pyrophosphate enzyme, N-terminal TPP binding region)|interpro:IPR012846(Acetolactate synthase, large subunit, biosynthetic)|interpro:IPR029035|interpro:IPR029061|refseq:YP_009584.1|refseq:WP_010937667.1|ensemblbacteria:AAS94843(transcript)|ensemblbacteria:DVU_0360(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR039368|entrezgene/locuslink:2793499(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Aai4tjiHCkT9Qvkgo8qDlXpkX2M882 rogid:lvQXMko7j1aQpMOKdFSyGBI+VUk882 intact-crc:8B2C8D95A1EA78D3|rigid:DDwJP7pAFo1AXE4JlxQ75Et1Vvo false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q46582 uniprotkb:P61940 intact:EBI-10065101|ensemblbacteria:AAS94887 intact:EBI-10065097|ensemblbacteria:AAS95676 psi-mi:dsvd_desvh(display_long)|uniprotkb:DVU_0404(locus name)|uniprotkb:dsvD(gene name)|psi-mi:dsvD(display_short) psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065094|imex:IM-22740-17 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014793(Dissimilatory sulphite reductase D)|rcsb pdb:1UCR|rcsb pdb:1WQ2|refseq:YP_009628.1|refseq:WP_010937711.1|ensemblbacteria:AAS94887(transcript)|ensemblbacteria:DVU_0404(gene)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2796154(identity) interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467|entrezgene/locuslink:2796655(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.51" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:CJDKHCTpavafrUtO7AKyHaPjbvE882 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 intact-crc:F23549ED181406DB|rigid:Rfs2qu+YeSMxmyyxbl42DoocptI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q46582 uniprotkb:P45574 intact:EBI-10065101|ensemblbacteria:AAS94887 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:dsvd_desvh(display_long)|uniprotkb:DVU_0404(locus name)|uniprotkb:dsvD(gene name)|psi-mi:dsvD(display_short) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065094|imex:IM-22740-17 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014793(Dissimilatory sulphite reductase D)|rcsb pdb:1UCR|rcsb pdb:1WQ2|refseq:YP_009628.1|refseq:WP_010937711.1|ensemblbacteria:AAS94887(transcript)|ensemblbacteria:DVU_0404(gene)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2796154(identity) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.42" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:CJDKHCTpavafrUtO7AKyHaPjbvE882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 intact-crc:F23549ED181406DB|rigid:Rfs2qu+YeSMxmyyxbl42DoocptI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q46582 uniprotkb:P45575 intact:EBI-10065101|ensemblbacteria:AAS94887 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:dsvd_desvh(display_long)|uniprotkb:DVU_0404(locus name)|uniprotkb:dsvD(gene name)|psi-mi:dsvD(display_short) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065094|imex:IM-22740-17 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014793(Dissimilatory sulphite reductase D)|rcsb pdb:1UCR|rcsb pdb:1WQ2|refseq:YP_009628.1|refseq:WP_010937711.1|ensemblbacteria:AAS94887(transcript)|ensemblbacteria:DVU_0404(gene)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2796154(identity) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.70" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:CJDKHCTpavafrUtO7AKyHaPjbvE882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:F23549ED181406DB|rigid:Rfs2qu+YeSMxmyyxbl42DoocptI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725K9 uniprotkb:Q726X1 intact:EBI-10065148|ensemblbacteria:AAS97674 intact:EBI-10065144|ensemblbacteria:AAS97456 psi-mi:pura_desvh(display_long)|uniprotkb:IMP--aspartate ligase(gene name synonym)|uniprotkb:DVU_3204(locus name)|uniprotkb:purA(gene name)|psi-mi:purA(display_short) psi-mi:leu3_desvh(display_long)|uniprotkb:3-IPM-DH(gene name synonym)|uniprotkb:Beta-IPM dehydrogenase(gene name synonym)|uniprotkb:DVU_2985(locus name)|uniprotkb:leuB(gene name)|psi-mi:leuB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065152|imex:IM-22740-19 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042109|interpro:IPR042110|interpro:IPR042111|interpro:IPR033128|interpro:IPR001114(Adenylosuccinate synthetase)|interpro:IPR018220|interpro:IPR027417|refseq:YP_012414.1|refseq:WP_010940462.1|ensemblbacteria:AAS97674(transcript)|ensemblbacteria:DVU_3204(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004019"(adenylosuccinate synthase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0044208"('de novo' AMP biosynthetic process)|entrezgene/locuslink:2796202(identity) interpro:IPR004429(3-isopropylmalate dehydrogenase)|interpro:IPR019818|interpro:IPR024084|refseq:YP_012196.1|refseq:WP_010940244.1|ensemblbacteria:AAS97456(transcript)|ensemblbacteria:DVU_2985(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003862"(3-isopropylmalate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2796299(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.92" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zln2fRv40MZHVON+2ZgVPiwvPag882 rogid:eQSphPmKm1cowcE+Wb4axb7nrM0882 intact-crc:F4B43B23C115D2E6|rigid:EMGn001pUD9Hu7GAgMOf3IUpEMc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725Q1 uniprotkb:Q72CT4 intact:EBI-10065220|ensemblbacteria:AAS97842 intact:EBI-10065224|ensemblbacteria:AAS95677 psi-mi:ilvd_desvh(display_long)|uniprotkb:DVU_3373(locus name)|uniprotkb:ilvD(gene name)|psi-mi:ilvD(display_short) psi-mi:q72ct4_desvh(display_long)|uniprotkb:ribBA(gene name synonym)|uniprotkb:DVU_1199(locus name)|uniprotkb:ribAB(gene name)|psi-mi:ribAB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065217|imex:IM-22740-23 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042096|interpro:IPR000581(Dihydroxy-acid and 6-phosphogluconate dehydratase)|interpro:IPR004404(Dihydroxy-acid dehydratase)|interpro:IPR020558|refseq:YP_012582.1|refseq:WP_010940628.1|ensemblbacteria:AAS97842(transcript)|ensemblbacteria:DVU_3373(gene)|go:"GO:0004160"(dihydroxy-acid dehydratase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037237|entrezgene/locuslink:2795687(identity) interpro:IPR000422(3,4-Dihydroxy-2-butanone 4-phosphate synthase)|interpro:IPR000926(GTP cyclohydrolase II)|interpro:IPR016299(Riboflavin biosynthesis protein RibA)|interpro:IPR017945|refseq:YP_010418.1|refseq:WP_010938495.1|interpro:IPR032677|ensemblbacteria:AAS95677(transcript)|ensemblbacteria:DVU_1199(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003935"(GTP cyclohydrolase II activity)|go:"GO:0005525"(GTP binding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008686"(3,4-dihydroxy-2-butanone-4-phosphate synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0030145"(manganese ion binding)|interpro:IPR036144|entrezgene/locuslink:2796656(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.90" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:a/oE5C3XEzlOa2Y3YW+wCE9f4Fk882 rogid:RY+ENji7jan83bIQ43gV4WNBia0882 intact-crc:3C17EB001010BB19|rigid:9k0FeEvGKQRmxN5NziNRQjFKWD0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726E7 uniprotkb:Q725M8 intact:EBI-10065191|ensemblbacteria:AAS97676 intact:EBI-10065188|ensemblbacteria:AAS97711 psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:q725m8_desvh(display_long)|uniprotkb:DVU_3241(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065185|imex:IM-22740-21 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) interpro:IPR035107|interpro:IPR011063(PP-loop)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_012451.1|refseq:WP_010940499.1|ensemblbacteria:AAS97711(transcript)|ensemblbacteria:DVU_3241(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0016740"(transferase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793891(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 rogid:T1BarfzGnuLRPkvxEYdwsgo3How882 intact-crc:99330BFAC5C528F1|rigid:kErhSymUkUzQqf4ph6uKWqSV4X8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EZ7 uniprotkb:Q725L6 intact:EBI-10065165|ensemblbacteria:AAS94904 intact:EBI-10065168|ensemblbacteria:AAS97667 psi-mi:q72ez7_desvh(display_long)|uniprotkb:DVU_0421(locus name) psi-mi:q725l6_desvh(display_long)|uniprotkb:DVU_3197(locus name)|uniprotkb:ilvE(gene name)|psi-mi:ilvE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065172|imex:IM-22740-20 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937728.1|interpro:IPR005925(Putative agmatinase)|interpro:IPR006035(Ureohydrolase)|interpro:IPR020855|refseq:YP_009645.1|ensemblbacteria:AAS94904(transcript)|ensemblbacteria:DVU_0421(gene)|go:"GO:0016813"("hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines")|go:"GO:0046872"(metal ion binding)|interpro:IPR023696|entrezgene/locuslink:2796704(identity) interpro:IPR033939|interpro:IPR001544(Aminotransferase, class IV)|interpro:IPR005785(Branched-chain amino acid aminotransferase I)|interpro:IPR018300|refseq:YP_012407.1|ensemblbacteria:AAS97667(transcript)|ensemblbacteria:DVU_3197(gene)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0050048"("L-leucine:2-oxoglutarate aminotransferase activity")|go:"GO:0052654"(L-leucine transaminase activity)|go:"GO:0052655"(L-valine transaminase activity)|go:"GO:0052656"(L-isoleucine transaminase activity)|interpro:IPR036038|interpro:IPR043131|interpro:IPR043132|entrezgene/locuslink:2793847(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:sg5FV00Th193ptxS1xLH01RfruM882 rogid:oF9p7KC5taTJtlvA3SKcGUbBGr0882 intact-crc:32D6C77E4F0B487E|rigid:LM2qzre7kLvkTtxVtGHJuxdm4io false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729I1 uniprotkb:Q725R5 intact:EBI-10065244|ensemblbacteria:AAS96843 intact:EBI-10065238|ensemblbacteria:AAS97828 psi-mi:q729i1_desvh(display_long)|uniprotkb:DVU_2370(locus name) psi-mi:q725r5_desvh(display_long)|uniprotkb:DVU_3359(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065241|imex:IM-22740-24 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005632("Outer membrane chaperone Skp (OmpH)")|interpro:IPR024930|refseq:YP_011583.1|refseq:WP_010939643.1|ensemblbacteria:AAS96843(transcript)|ensemblbacteria:DVU_2370(gene)|go:"GO:0051082"(unfolded protein binding)|entrezgene/locuslink:2796103(identity) refseq:YP_012568.1|refseq:WP_010940614.1|ensemblbacteria:AAS97828(transcript)|ensemblbacteria:DVU_3359(gene)|entrezgene/locuslink:2795673(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.28" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Aly50S+htbeikloVF87gXN0icKE882 rogid:L6HHP1ZsRduPuCE+KCmIIC+wf7o882 intact-crc:F91563156D2AE237|rigid:kxuLPHHv/wEDR+4UG/DYgWco/Gc false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S6 uniprotkb:Q725S7 intact:EBI-10065263|ensemblbacteria:AAS97817 intact:EBI-10065266|ensemblbacteria:AAS97816 psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:q725s7_desvh(display_long)|uniprotkb:DVU_3347(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065290|imex:IM-22740-26 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2796360(identity) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_012556.1|refseq:WP_010940603.1|ensemblbacteria:AAS97816(transcript)|ensemblbacteria:DVU_3347(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|entrezgene/locuslink:2796359(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 rogid:Civ/ah8AKETrJlNyqmunLGSpe1M882 intact-crc:531E5406989FCDE4|rigid:7LDo+fLVSLUHp1A3855eymzl/lU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S6 uniprotkb:Q725S5 intact:EBI-10065263|ensemblbacteria:AAS97817 intact:EBI-10065269|ensemblbacteria:AAS97818 psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:q725s5_desvh(display_long)|uniprotkb:DVU_3349(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065290|imex:IM-22740-26 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2796360(identity) interpro:IPR033412|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|refseq:YP_012558.1|refseq:WP_010940605.1|go:"GO:0016491"(oxidoreductase activity)|ensemblbacteria:AAS97818(transcript)|ensemblbacteria:DVU_3349(gene)|entrezgene/locuslink:2796361(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 rogid:B9/pfTeEbS+8jOfuzf66hNvqUAY882 intact-crc:531E5406989FCDE4|rigid:7LDo+fLVSLUHp1A3855eymzl/lU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S6 uniprotkb:Q725S4 intact:EBI-10065263|ensemblbacteria:AAS97817 intact:EBI-10065257|ensemblbacteria:AAS97819 psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:q725s4_desvh(display_long)|uniprotkb:DVU_3350(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065290|imex:IM-22740-26 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2796360(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_012559.1|refseq:WP_010940606.1|ensemblbacteria:AAS97819(transcript)|ensemblbacteria:DVU_3350(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795664(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 rogid:S9Pusn6tlVAW0ifoF8tStOCxzs0882 intact-crc:531E5406989FCDE4|rigid:7LDo+fLVSLUHp1A3855eymzl/lU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S7 uniprotkb:Q725S6 intact:EBI-10065266|ensemblbacteria:AAS97816 intact:EBI-10065263|ensemblbacteria:AAS97817 psi-mi:q725s7_desvh(display_long)|uniprotkb:DVU_3347(locus name) psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065328|imex:IM-22740-28 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_012556.1|refseq:WP_010940603.1|ensemblbacteria:AAS97816(transcript)|ensemblbacteria:DVU_3347(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|entrezgene/locuslink:2796359(identity) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2796360(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Civ/ah8AKETrJlNyqmunLGSpe1M882 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 intact-crc:2217B7764DD18F25|rigid:REDnJICNDTQ/wYT7esYNSdQvuVM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S7 uniprotkb:Q725S5 intact:EBI-10065266|ensemblbacteria:AAS97816 intact:EBI-10065269|ensemblbacteria:AAS97818 psi-mi:q725s7_desvh(display_long)|uniprotkb:DVU_3347(locus name) psi-mi:q725s5_desvh(display_long)|uniprotkb:DVU_3349(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065328|imex:IM-22740-28 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_012556.1|refseq:WP_010940603.1|ensemblbacteria:AAS97816(transcript)|ensemblbacteria:DVU_3347(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|entrezgene/locuslink:2796359(identity) interpro:IPR033412|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|refseq:YP_012558.1|refseq:WP_010940605.1|go:"GO:0016491"(oxidoreductase activity)|ensemblbacteria:AAS97818(transcript)|ensemblbacteria:DVU_3349(gene)|entrezgene/locuslink:2796361(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Civ/ah8AKETrJlNyqmunLGSpe1M882 rogid:B9/pfTeEbS+8jOfuzf66hNvqUAY882 intact-crc:2217B7764DD18F25|rigid:REDnJICNDTQ/wYT7esYNSdQvuVM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S4 uniprotkb:Q725S6 intact:EBI-10065257|ensemblbacteria:AAS97819 intact:EBI-10065263|ensemblbacteria:AAS97817 psi-mi:q725s4_desvh(display_long)|uniprotkb:DVU_3350(locus name) psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065260|imex:IM-22740-25 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_012559.1|refseq:WP_010940606.1|ensemblbacteria:AAS97819(transcript)|ensemblbacteria:DVU_3350(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795664(identity) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2796360(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:S9Pusn6tlVAW0ifoF8tStOCxzs0882 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 intact-crc:83D1AFD05BCE7ABF|rigid:7LDo+fLVSLUHp1A3855eymzl/lU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S4 uniprotkb:Q725S5 intact:EBI-10065257|ensemblbacteria:AAS97819 intact:EBI-10065269|ensemblbacteria:AAS97818 psi-mi:q725s4_desvh(display_long)|uniprotkb:DVU_3350(locus name) psi-mi:q725s5_desvh(display_long)|uniprotkb:DVU_3349(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065260|imex:IM-22740-25 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_012559.1|refseq:WP_010940606.1|ensemblbacteria:AAS97819(transcript)|ensemblbacteria:DVU_3350(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795664(identity) interpro:IPR033412|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|refseq:YP_012558.1|refseq:WP_010940605.1|go:"GO:0016491"(oxidoreductase activity)|ensemblbacteria:AAS97818(transcript)|ensemblbacteria:DVU_3349(gene)|entrezgene/locuslink:2796361(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.95" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:S9Pusn6tlVAW0ifoF8tStOCxzs0882 rogid:B9/pfTeEbS+8jOfuzf66hNvqUAY882 intact-crc:83D1AFD05BCE7ABF|rigid:7LDo+fLVSLUHp1A3855eymzl/lU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S4 uniprotkb:Q725S7 intact:EBI-10065257|ensemblbacteria:AAS97819 intact:EBI-10065266|ensemblbacteria:AAS97816 psi-mi:q725s4_desvh(display_long)|uniprotkb:DVU_3350(locus name) psi-mi:q725s7_desvh(display_long)|uniprotkb:DVU_3347(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065260|imex:IM-22740-25 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_012559.1|refseq:WP_010940606.1|ensemblbacteria:AAS97819(transcript)|ensemblbacteria:DVU_3350(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795664(identity) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_012556.1|refseq:WP_010940603.1|ensemblbacteria:AAS97816(transcript)|ensemblbacteria:DVU_3347(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|entrezgene/locuslink:2796359(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:S9Pusn6tlVAW0ifoF8tStOCxzs0882 rogid:Civ/ah8AKETrJlNyqmunLGSpe1M882 intact-crc:83D1AFD05BCE7ABF|rigid:7LDo+fLVSLUHp1A3855eymzl/lU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725V9 uniprotkb:Q725W0 intact:EBI-10065362|ensemblbacteria:AAS97784 intact:EBI-10065366|ensemblbacteria:AAS97783 psi-mi:q725v9_desvh(display_long)|uniprotkb:DVU_3316(locus name)|uniprotkb:pyrD(gene name)|psi-mi:pyrD(display_short) psi-mi:q725w0_desvh(display_long)|uniprotkb:DVU_3315(locus name)|uniprotkb:pyrK(gene name)|psi-mi:pyrK(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065370|imex:IM-22740-30 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940572.1|interpro:IPR033888|interpro:IPR001295(Dihydroorotate dehydrogenase, core)|interpro:IPR005720(Dihydroorotate dehydrogenase, class 1, core)|interpro:IPR012135(Dihydroorotate dehydrogenase, classes 1 and 2)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024920|refseq:YP_012524.1|ensemblbacteria:AAS97784(transcript)|ensemblbacteria:DVU_3316(gene)|go:"GO:0004152"(dihydroorotate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|entrezgene/locuslink:2796052(identity) interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|refseq:YP_012523.1|refseq:WP_010940571.1|ensemblbacteria:AAS97783(transcript)|ensemblbacteria:DVU_3315(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261|entrezgene/locuslink:2796051(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:s+GZoJbZ1WbnwValE/o98ek0FcA882 rogid:tbxDfY8mz0HIUuZQfBQn+37c6ag882 intact-crc:BBD52535EC3CCA8C|rigid:HRuvlZ3p/mvJtPaANT8e5Jqm8F4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725W8 uniprotkb:Q725W7 intact:EBI-10065409|ensemblbacteria:AAS97775 intact:EBI-10065413|ensemblbacteria:AAS97776 psi-mi:q725w8_desvh(display_long)|uniprotkb:DVU_3307(locus name)|uniprotkb:ubiX(gene name)|psi-mi:ubiX(display_short) psi-mi:y3308_desvh(display_long)|uniprotkb:DVU_3308(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065416|imex:IM-22740-33 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003382(Flavoprotein)|interpro:IPR004507(Phenylacrylic acid decarboxylase)|refseq:YP_012515.1|refseq:WP_010940563.1|ensemblbacteria:AAS97775(transcript)|ensemblbacteria:DVU_3307(gene)|go:"GO:0016829"(lyase activity)|go:"GO:0106141"(flavin prenyltransferase activity)|interpro:IPR036551|entrezgene/locuslink:2796043(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR022877|refseq:YP_012516.1|refseq:WP_010940564.1|ensemblbacteria:AAS97776(transcript)|ensemblbacteria:DVU_3308(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036866|entrezgene/locuslink:2796044(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.65" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bGIB6aEgR23QVj790rILJ4FjOj0882 rogid:LSP6qf9lLsruesKVLdsnR2wt1dk882 intact-crc:E2CE6B9D4FBAE4B6|rigid:STjdnDsJLzskdSJwsOYjnAodm8c false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725V9 uniprotkb:Q725W0 intact:EBI-10065362|ensemblbacteria:AAS97784 intact:EBI-10065366|ensemblbacteria:AAS97783 psi-mi:q725v9_desvh(display_long)|uniprotkb:DVU_3316(locus name)|uniprotkb:pyrD(gene name)|psi-mi:pyrD(display_short) psi-mi:q725w0_desvh(display_long)|uniprotkb:DVU_3315(locus name)|uniprotkb:pyrK(gene name)|psi-mi:pyrK(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065383|imex:IM-22740-31 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940572.1|interpro:IPR033888|interpro:IPR001295(Dihydroorotate dehydrogenase, core)|interpro:IPR005720(Dihydroorotate dehydrogenase, class 1, core)|interpro:IPR012135(Dihydroorotate dehydrogenase, classes 1 and 2)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024920|refseq:YP_012524.1|ensemblbacteria:AAS97784(transcript)|ensemblbacteria:DVU_3316(gene)|go:"GO:0004152"(dihydroorotate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|entrezgene/locuslink:2796052(identity) interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|refseq:YP_012523.1|refseq:WP_010940571.1|ensemblbacteria:AAS97783(transcript)|ensemblbacteria:DVU_3315(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261|entrezgene/locuslink:2796051(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:s+GZoJbZ1WbnwValE/o98ek0FcA882 rogid:tbxDfY8mz0HIUuZQfBQn+37c6ag882 intact-crc:A0C338F9E9425D5F|rigid:HRuvlZ3p/mvJtPaANT8e5Jqm8F4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FE3 uniprotkb:Q725X0 intact:EBI-10065429|ensemblbacteria:AAS94754 intact:EBI-10065435|ensemblbacteria:AAS97773 psi-mi:q72fe3_desvh(display_long)|uniprotkb:DVU_0271(locus name) psi-mi:q725x0_desvh(display_long)|uniprotkb:DVU_3305(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065432|imex:IM-22740-34 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR011006(CheY-like)|refseq:YP_009495.1|refseq:WP_010937580.1|ensemblbacteria:AAS94754(transcript)|ensemblbacteria:DVU_0271(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0004673"(protein histidine kinase activity)|interpro:IPR036890|entrezgene/locuslink:2794325(identity) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_012513.1|refseq:WP_010940561.1|ensemblbacteria:AAS97773(transcript)|ensemblbacteria:DVU_3305(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2796040(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.95" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:s2UQRGCIjurFEk500hhbKu4bpXs882 rogid:jk6iHDRjMlweNxGfxL9Z/85oW6U882 intact-crc:12ED7F93C56C3097|rigid:trAYkPd6xPQiQ+frw3iG9OHTJ4Q false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726A0 uniprotkb:P45575 intact:EBI-10064827|ensemblbacteria:AAS97743 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:q726a0_desvh(display_long)|uniprotkb:DVU_3273(locus name) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065448|imex:IM-22740-35 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_012483.1|refseq:WP_010940531.1|ensemblbacteria:AAS97743(transcript)|ensemblbacteria:DVU_3273(gene)|entrezgene/locuslink:2795997(identity) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:y33nk4pbVYiddUhfLrewkguhBjI882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:F345CD5F5DC8AB7B|rigid:KmKUZBlxZorTL8vE3tIIOq6Qgv4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726A0 uniprotkb:P45574 intact:EBI-10064827|ensemblbacteria:AAS97743 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:q726a0_desvh(display_long)|uniprotkb:DVU_3273(locus name) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065448|imex:IM-22740-35 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_012483.1|refseq:WP_010940531.1|ensemblbacteria:AAS97743(transcript)|ensemblbacteria:DVU_3273(gene)|entrezgene/locuslink:2795997(identity) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.76" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:y33nk4pbVYiddUhfLrewkguhBjI882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 intact-crc:F345CD5F5DC8AB7B|rigid:KmKUZBlxZorTL8vE3tIIOq6Qgv4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726A1 uniprotkb:Q72EV5 intact:EBI-10065486|ensemblbacteria:AAS97742 intact:EBI-10065482|ensemblbacteria:AAS94946 psi-mi:q726a1_desvh(display_long)|uniprotkb:DVU_3272(locus name) psi-mi:q72ev5_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate synthase(gene name synonym)|uniprotkb:DVU_0463(locus name)|uniprotkb:aroA(gene name)|psi-mi:aroA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065489|imex:IM-22740-37 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001440(Tetratricopeptide TPR-1)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|refseq:YP_012482.1|refseq:WP_010940530.1|ensemblbacteria:AAS97742(transcript)|ensemblbacteria:DVU_3272(gene)|entrezgene/locuslink:2795996(identity) interpro:IPR001986(3-phosphoshikimate 1-carboxyvinyltransferase, core)|interpro:IPR006264(3-phosphoshikimate 1-carboxyvinyltransferase, subgroup)|interpro:IPR013792(RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)|refseq:WP_010937770.1|refseq:YP_009687.1|ensemblbacteria:AAS94946(transcript)|ensemblbacteria:DVU_0463(gene)|go:"GO:0003866"(3-phosphoshikimate 1-carboxyvinyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR036968|entrezgene/locuslink:2794476(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.68" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:aCCnvWM114Max4sOCBsN5+djcjA882 rogid:wTgIPqX9LPxWksya/Ts48V+an18882 intact-crc:4AA0C034E3F2FFA3|rigid:LiHUlQJAj3F9VF6Uvoc3Q7vyKTY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726C9 uniprotkb:Q726C8 intact:EBI-10065541|ensemblbacteria:AAS97732 intact:EBI-10065537|ensemblbacteria:AAS97733 psi-mi:q726c9_desvh(display_long)|uniprotkb:DVU_3262(locus name)|uniprotkb:fdrA(gene name)|psi-mi:fdrA(display_short) psi-mi:q726c8_desvh(display_long)|uniprotkb:DVU_3263(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065534|imex:IM-22740-40 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003952(Fumarate reductase/succinate dehydrogenase, FAD-binding site)|interpro:IPR003953(Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal)|interpro:IPR014006(Succinate dehydrogenase or fumarate reductase, flavoprotein subunit)|interpro:IPR015939(Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal)|interpro:IPR027477|refseq:YP_012472.1|refseq:WP_010940520.1|ensemblbacteria:AAS97732(transcript)|ensemblbacteria:DVU_3262(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016627"(oxidoreductase activity, acting on the CH-CH group of donors)|go:"GO:0022900"(electron transport chain)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|interpro:IPR037099|entrezgene/locuslink:2793866(identity) interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:YP_012473.1|refseq:WP_010940521.1|ensemblbacteria:AAS97733(transcript)|ensemblbacteria:DVU_3263(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036010|entrezgene/locuslink:2793867(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.38" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:3PLDC1TVgGl0L9D3kG1MZ8jIpXo882 rogid:KLRaHE5n9ReFozUKlyI8ZT+N7JA882 intact-crc:BB17B002BCF82DDD|rigid:WU5ER5DFq1RPnOlbJljzh/W5kG4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DN0 uniprotkb:Q726B9 intact:EBI-10065518|ensemblbacteria:AAS95379 intact:EBI-10065515|ensemblbacteria:AAS97650 psi-mi:y899_desvh(display_long)|uniprotkb:DVU_0899(locus name) psi-mi:q726b9_desvh(display_long)|uniprotkb:DVU_3180(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065521|imex:IM-22740-39 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938198.1|interpro:IPR007169(Protein of unknown function DUF370)|refseq:YP_010120.1|ensemblbacteria:AAS95379(transcript)|ensemblbacteria:DVU_0899(gene)|entrezgene/locuslink:2794117(identity) interpro:IPR000014(PAS)|interpro:IPR000160(GGDEF)|interpro:IPR013976(Metal-dependent hydrolase HDOD)|interpro:IPR029787|refseq:YP_012390.1|refseq:WP_010940438.1|ensemblbacteria:AAS97650(transcript)|ensemblbacteria:DVU_3180(gene)|interpro:IPR035965|interpro:IPR043128|entrezgene/locuslink:2793830(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.81" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:F4jDlFRlRj8YCjX5pws+vGn/QPc882 rogid:N3Z5G0gGQjd+aPbBXPmrdd4csqo882 intact-crc:92A00B8E8E4EB7F2|rigid:yh3qhnhalUl2BvWbwGQYviEdQQs false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726E7 uniprotkb:Q725M8 intact:EBI-10065191|ensemblbacteria:AAS97676 intact:EBI-10065188|ensemblbacteria:AAS97711 psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:q725m8_desvh(display_long)|uniprotkb:DVU_3241(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065568|imex:IM-22740-42 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) interpro:IPR035107|interpro:IPR011063(PP-loop)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_012451.1|refseq:WP_010940499.1|ensemblbacteria:AAS97711(transcript)|ensemblbacteria:DVU_3241(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0016740"(transferase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793891(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 rogid:T1BarfzGnuLRPkvxEYdwsgo3How882 intact-crc:EDE9C6CE0AAB6977|rigid:taUIkXs1CHNWhcuUcURvQFZaZwg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726E7 uniprotkb:Q72C29 intact:EBI-10065191|ensemblbacteria:AAS97676 intact:EBI-10065571|ensemblbacteria:AAS95933 psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065568|imex:IM-22740-42 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 intact-crc:EDE9C6CE0AAB6977|rigid:taUIkXs1CHNWhcuUcURvQFZaZwg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726J4 uniprotkb:Q72FQ1 intact:EBI-10065640|ensemblbacteria:AAS97584 intact:EBI-10065635|ensemblbacteria:AAS94646 psi-mi:cara_desvh(display_long)|uniprotkb:Carbamoyl-phosphate synthetase glutamine chain(gene name synonym)|uniprotkb:DVU_3113(locus name)|uniprotkb:carA(gene name)|psi-mi:carA(display_short) psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065632|imex:IM-22740-45 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002474(Carbamoyl phosphate synthase, small subunit, N-terminal)|interpro:IPR006274(Carbamoyl phosphate synthase, small subunit)|interpro:IPR017926|interpro:IPR029062|refseq:YP_012324.1|refseq:WP_010940372.1|ensemblbacteria:DVU_3113(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|ensemblbacteria:AAS97584(transcript)|interpro:IPR035686|interpro:IPR036480|entrezgene/locuslink:2796605(identity) interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914|entrezgene/locuslink:2796778(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:X81Lv9JQcjmM+HsJv1TePNg/3i0882 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 intact-crc:C6D6884EBCCBA43C|rigid:Uj0ewrZ5PRS1vHHVQhJ6jpYeUJY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726L8 uniprotkb:Q72ER6 intact:EBI-10065674|ensemblbacteria:AAS97559 intact:EBI-10065670|ensemblbacteria:AAS94985 psi-mi:q726l8_desvh(display_long)|uniprotkb:DVU_3088(locus name) psi-mi:pnp_desvh(display_long)|uniprotkb:Polynucleotide phosphorylase(gene name synonym)|uniprotkb:DVU_0503(locus name)|uniprotkb:pnp(gene name)|psi-mi:pnp(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065667|imex:IM-22740-47 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|refseq:YP_012299.1|refseq:WP_010940347.1|ensemblbacteria:AAS97559(transcript)|ensemblbacteria:DVU_3088(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016787"(hydrolase activity)|entrezgene/locuslink:2796439(identity) interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR003029(S1, RNA binding)|interpro:IPR004087(K Homology)|interpro:IPR004088(K Homology, type 1)|interpro:IPR012162(Polyribonucleotide nucleotidyltransferase)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR015847(Exoribonuclease, phosphorolytic domain 2)|interpro:IPR015848(Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type)|interpro:IPR020568|interpro:IPR022967|interpro:IPR027408|refseq:YP_009726.1|refseq:WP_010937809.1|ensemblbacteria:AAS94985(transcript)|ensemblbacteria:DVU_0503(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003723"(RNA binding)|go:"GO:0004654"(polyribonucleotide nucleotidyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006396"(RNA processing)|go:"GO:0006402"(mRNA catabolic process)|interpro:IPR036345|interpro:IPR036612|entrezgene/locuslink:2796763(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.69" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ZAuTNjt+wSNLOJ2DiRDzBQWO7QY882 rogid:zmbOa0wmOUU+huiyk2Ug8Pm0pg0882 intact-crc:2D2F6A1C6700CA8B|rigid:LCsKvTAfGAXQpXwiAbJSCLkDvmY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726L8 uniprotkb:Q72F92 intact:EBI-10065674|ensemblbacteria:AAS97559 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:q726l8_desvh(display_long)|uniprotkb:DVU_3088(locus name) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065667|imex:IM-22740-47 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|refseq:YP_012299.1|refseq:WP_010940347.1|ensemblbacteria:AAS97559(transcript)|ensemblbacteria:DVU_3088(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016787"(hydrolase activity)|entrezgene/locuslink:2796439(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.72" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ZAuTNjt+wSNLOJ2DiRDzBQWO7QY882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:2D2F6A1C6700CA8B|rigid:LCsKvTAfGAXQpXwiAbJSCLkDvmY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q726Q8 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10065695|ensemblbacteria:AAS97519 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:q726q8_desvh(display_long)|uniprotkb:Aspartate-beta-semialdehyde dehydrogenase(gene name synonym)|uniprotkb:DVU_3048(locus name)|uniprotkb:asd(gene name)|psi-mi:asd(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065704|imex:IM-22740-48 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) interpro:IPR000534(Semialdehyde dehydrogenase, NAD-binding)|interpro:IPR005986(Aspartate-semialdehyde dehydrogenase, bacterial)|interpro:IPR012080(Aspartate-semialdehyde dehydrogenase)|interpro:IPR012280(Semialdehyde dehydrogenase, dimerisation region)|refseq:YP_012259.1|refseq:WP_010940307.1|ensemblbacteria:AAS97519(transcript)|ensemblbacteria:DVU_3048(gene)|go:"GO:0004073"(aspartate-semialdehyde dehydrogenase activity)|go:"GO:0009088"(threonine biosynthetic process)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0019877"(diaminopimelate biosynthetic process)|go:"GO:0046983"(protein dimerization activity)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|go:"GO:0071266"('de novo' L-methionine biosynthetic process)|interpro:IPR036291|entrezgene/locuslink:2796074(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.85" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:9MEsL09RnizSMeSXTyVZFc1FIis882 intact-crc:9F33CF1979F3D3ED|rigid:zyY6IpJ800aPxt9i8sIXZwDuXUM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726H4 uniprotkb:Q728C9 intact:EBI-10065608|ensemblbacteria:AAS97604 intact:EBI-10065615|ensemblbacteria:AAS97146 psi-mi:glpk_desvh(display_long)|uniprotkb:"ATP:glycerol 3-phosphotransferase"(gene name synonym)|uniprotkb:Glycerokinase(gene name synonym)|uniprotkb:DVU_3134(locus name)|uniprotkb:glpK(gene name)|psi-mi:glpK(display_short) psi-mi:q728c9_desvh(display_long)|uniprotkb:DVU_2674(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065605|imex:IM-22740-44 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005999(Glycerol kinase)|interpro:IPR018483|interpro:IPR018484|interpro:IPR018485|refseq:YP_012344.1|interpro:IPR000577(Carbohydrate kinase, FGGY)|refseq:WP_010940392.1|ensemblbacteria:AAS97604(transcript)|ensemblbacteria:DVU_3134(gene)|go:"GO:0004370"(glycerol kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006071"(glycerol metabolic process)|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0019563"(glycerol catabolic process)|interpro:IPR043129|entrezgene/locuslink:2793983(identity) refseq:WP_010939943.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:YP_011886.1|ensemblbacteria:AAS97146(transcript)|ensemblbacteria:DVU_2674(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|interpro:IPR036010|entrezgene/locuslink:2795045(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.96" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:h/WBvZnsnrFBDtK+s8Rpl4hRGSM882 rogid:8Ml5+CDviPORGaP/Qqy/mVVBX/4882 intact-crc:C4C61726BCD6304F|rigid:0kYOQWwXjhOhflBwg9j8FqqTlsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726H4 uniprotkb:Q728D0 intact:EBI-10065608|ensemblbacteria:AAS97604 intact:EBI-10065612|ensemblbacteria:AAS97145 psi-mi:glpk_desvh(display_long)|uniprotkb:"ATP:glycerol 3-phosphotransferase"(gene name synonym)|uniprotkb:Glycerokinase(gene name synonym)|uniprotkb:DVU_3134(locus name)|uniprotkb:glpK(gene name)|psi-mi:glpK(display_short) psi-mi:q728d0_desvh(display_long)|uniprotkb:DVU_2673(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065605|imex:IM-22740-44 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005999(Glycerol kinase)|interpro:IPR018483|interpro:IPR018484|interpro:IPR018485|refseq:YP_012344.1|interpro:IPR000577(Carbohydrate kinase, FGGY)|refseq:WP_010940392.1|ensemblbacteria:AAS97604(transcript)|ensemblbacteria:DVU_3134(gene)|go:"GO:0004370"(glycerol kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006071"(glycerol metabolic process)|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0019563"(glycerol catabolic process)|interpro:IPR043129|entrezgene/locuslink:2793983(identity) interpro:IPR000447(FAD-dependent glycerol-3-phosphate dehydrogenase)|interpro:IPR006076(FAD dependent oxidoreductase)|refseq:YP_011885.1|refseq:WP_010939942.1|ensemblbacteria:AAS97145(transcript)|ensemblbacteria:DVU_2673(gene)|go:"GO:0004368"("glycerol-3-phosphate dehydrogenase (quinone) activity")|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0009331"(glycerol-3-phosphate dehydrogenase complex)|interpro:IPR036188|entrezgene/locuslink:2795044(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.96" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:h/WBvZnsnrFBDtK+s8Rpl4hRGSM882 rogid:fmhid+y35JPhego3Sq84XbrJpy8882 intact-crc:C4C61726BCD6304F|rigid:0kYOQWwXjhOhflBwg9j8FqqTlsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q72DZ0 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065736|ensemblbacteria:AAS95269 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q72dz0_desvh(display_long)|uniprotkb:mreB-1(gene name)|psi-mi:mreB-1(display_short)|uniprotkb:mreB(gene name synonym)|uniprotkb:DVU_0789(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065843|imex:IM-22740-51 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR004753(Cell shape determining protein MreB/Mrl)|refseq:YP_010010.1|refseq:WP_010938090.1|ensemblbacteria:AAS95269(transcript)|ensemblbacteria:DVU_0789(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008360"(regulation of cell shape)|interpro:IPR043129|entrezgene/locuslink:2794814(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.53" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:fFYaNrre0bxUOT6ODto2PoxMHgc882 intact-crc:058FAE1FB6FAA5D9|rigid:PfXcN6//kA314Z/VxvKodSe4fj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q729I6 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065723|ensemblbacteria:AAS96837 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065843|imex:IM-22740-51 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 intact-crc:058FAE1FB6FAA5D9|rigid:PfXcN6//kA314Z/VxvKodSe4fj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q729E9 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065843|imex:IM-22740-51 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2794487(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.51" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:058FAE1FB6FAA5D9|rigid:PfXcN6//kA314Z/VxvKodSe4fj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q726S8 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065726|ensemblbacteria:AAS97499 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065843|imex:IM-22740-51 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.84" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 intact-crc:058FAE1FB6FAA5D9|rigid:PfXcN6//kA314Z/VxvKodSe4fj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q726S3 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065843|imex:IM-22740-51 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:058FAE1FB6FAA5D9|rigid:PfXcN6//kA314Z/VxvKodSe4fj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q72AD3 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065720|ensemblbacteria:AAS96537 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065843|imex:IM-22740-51 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 intact-crc:058FAE1FB6FAA5D9|rigid:PfXcN6//kA314Z/VxvKodSe4fj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q727A8 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065746|ensemblbacteria:AAS97419 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065843|imex:IM-22740-51 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.60" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 intact-crc:058FAE1FB6FAA5D9|rigid:PfXcN6//kA314Z/VxvKodSe4fj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S4 uniprotkb:Q729E7 intact:EBI-10065743|ensemblbacteria:AAS97503 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065843|imex:IM-22740-51 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794489(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.53" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:058FAE1FB6FAA5D9|rigid:PfXcN6//kA314Z/VxvKodSe4fj4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q726S8 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065726|ensemblbacteria:AAS97499 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.60" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q726S4 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q727A8 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065746|ensemblbacteria:AAS97419 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.61" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72DZ0 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065736|ensemblbacteria:AAS95269 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72dz0_desvh(display_long)|uniprotkb:mreB-1(gene name)|psi-mi:mreB-1(display_short)|uniprotkb:mreB(gene name synonym)|uniprotkb:DVU_0789(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR004753(Cell shape determining protein MreB/Mrl)|refseq:YP_010010.1|refseq:WP_010938090.1|ensemblbacteria:AAS95269(transcript)|ensemblbacteria:DVU_0789(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008360"(regulation of cell shape)|interpro:IPR043129|entrezgene/locuslink:2794814(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.57" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:fFYaNrre0bxUOT6ODto2PoxMHgc882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q729E7 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794489(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q729I6 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065723|ensemblbacteria:AAS96837 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q729E9 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2794487(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.47" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q729F0 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72AD3 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065720|ensemblbacteria:AAS96537 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.37" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72A93 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.36" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72AS3 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-9012330 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065717|imex:IM-22740-49 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.45" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:B4CB01EC16C693DA|rigid:LR326xIcIKkz4kAUB2EC6AWg5kM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726V4 uniprotkb:Q72CT0 intact:EBI-10065980|ensemblbacteria:AAS97473 intact:EBI-10065973|ensemblbacteria:AAS95681 psi-mi:q726v4_desvh(display_long)|uniprotkb:DVU_3002(locus name) psi-mi:glya_desvh(display_long)|uniprotkb:DVU_1203(locus name)|uniprotkb:glyA(gene name)|psi-mi:glyA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065977|imex:IM-22740-55 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR029063|refseq:YP_012213.1|refseq:WP_010940261.1|ensemblbacteria:AAS97473(transcript)|ensemblbacteria:DVU_3002(gene)|entrezgene/locuslink:2793715(identity) interpro:IPR001085(Glycine hydroxymethyltransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR019798|refseq:YP_010422.1|refseq:WP_010938499.1|ensemblbacteria:AAS95681(transcript)|ensemblbacteria:DVU_1203(gene)|go:"GO:0004372"(glycine hydroxymethyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019264"(glycine biosynthetic process from serine)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0035999"(tetrahydrofolate interconversion)|interpro:IPR039429|entrezgene/locuslink:2796660(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.39" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Ekdhp3OYSYSIaFEnC9a1ycSZX+0882 rogid:qvZABnUa4OAh0x1pR2kjrAk4Hrk882 intact-crc:FE71F23BE5AFA46C|rigid:Jnc5WIcRM8vDhvEgDwSGmR2Yl+M false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q72CV4 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065903|ensemblbacteria:AAS95657 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q72cv4_desvh(display_long)|uniprotkb:DVU_1179(locus name)|uniprotkb:aor(gene name)|psi-mi:aor(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065897|imex:IM-22740-53 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|refseq:YP_010398.1|refseq:WP_010938476.1|ensemblbacteria:AAS95657(transcript)|ensemblbacteria:DVU_1179(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2796664(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.30" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid://UHaftptjuUgn+rNqOh5dzqgdY882 intact-crc:13ED6D6326A68077|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q729U7 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065900|ensemblbacteria:AAS96724 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q729u7_desvh(display_long)|uniprotkb:DVU_2251(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065897|imex:IM-22740-53 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR001387(Helix-turn-helix type 3)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|interpro:IPR011051(Cupin, RmlC-type)|interpro:IPR013096(Cupin 2, conserved barrel)|interpro:IPR014710(RmlC-like jelly roll fold)|refseq:YP_011464.1|refseq:WP_010939526.1|ensemblbacteria:AAS96724(transcript)|ensemblbacteria:DVU_2251(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2795403(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.50" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:9GqiNXYRfuPwD7YOjwThmdE6ATI882 intact-crc:13ED6D6326A68077|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q72A94 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065907|ensemblbacteria:AAS96576 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q72a94_desvh(display_long)|uniprotkb:DVU_2103(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065897|imex:IM-22740-53 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011316.1|refseq:WP_010939380.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|ensemblbacteria:AAS96576(transcript)|ensemblbacteria:DVU_2103(gene)|entrezgene/locuslink:2795479(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.32" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:bIlVXxSJZO2d9vZ2o9xs0d/Wo/Q882 intact-crc:13ED6D6326A68077|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q726S4 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065897|imex:IM-22740-53 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.84" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:13ED6D6326A68077|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q726S3 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065897|imex:IM-22740-53 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.60" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:13ED6D6326A68077|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q72AS3 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-9012330 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065897|imex:IM-22740-53 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:13ED6D6326A68077|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726W1 uniprotkb:Q726W7 intact:EBI-10066006|ensemblbacteria:AAS97466 intact:EBI-10066012|ensemblbacteria:AAS97460 psi-mi:q726w1_desvh(display_long)|uniprotkb:DVU_2995(locus name) psi-mi:q726w7_desvh(display_long)|uniprotkb:DVU_2989(locus name)|uniprotkb:pspF(gene name)|psi-mi:pspF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066009|imex:IM-22740-57 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_012206.1|refseq:WP_010940254.1|ensemblbacteria:AAS97466(transcript)|ensemblbacteria:DVU_2995(gene)|go:"GO:0016757"(glycosyltransferase activity)|interpro:IPR001296(Glycosyl transferase, group 1)|entrezgene/locuslink:2796309(identity) interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR014317(Transcriptional activator, PspF)|interpro:IPR025944|interpro:IPR027417|refseq:YP_012200.1|refseq:WP_010940248.1|ensemblbacteria:AAS97460(transcript)|ensemblbacteria:DVU_2989(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2796303(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:71gG1F/+ws72rW/2wuMArtxu0Yk882 rogid:JIBOPJpQakjWd7+I9qKUlsFT0kU882 intact-crc:EE34569BEF043FEA|rigid:FidyfgFKTXUtg/DIKM7cZqxRZ0Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726W7 uniprotkb:Q726W1 intact:EBI-10066012|ensemblbacteria:AAS97460 intact:EBI-10066006|ensemblbacteria:AAS97466 psi-mi:q726w7_desvh(display_long)|uniprotkb:DVU_2989(locus name)|uniprotkb:pspF(gene name)|psi-mi:pspF(display_short) psi-mi:q726w1_desvh(display_long)|uniprotkb:DVU_2995(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066039|imex:IM-22740-59 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR014317(Transcriptional activator, PspF)|interpro:IPR025944|interpro:IPR027417|refseq:YP_012200.1|refseq:WP_010940248.1|ensemblbacteria:AAS97460(transcript)|ensemblbacteria:DVU_2989(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2796303(identity) refseq:YP_012206.1|refseq:WP_010940254.1|ensemblbacteria:AAS97466(transcript)|ensemblbacteria:DVU_2995(gene)|go:"GO:0016757"(glycosyltransferase activity)|interpro:IPR001296(Glycosyl transferase, group 1)|entrezgene/locuslink:2796309(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:JIBOPJpQakjWd7+I9qKUlsFT0kU882 rogid:71gG1F/+ws72rW/2wuMArtxu0Yk882 intact-crc:6DB0BC94DBB13739|rigid:FidyfgFKTXUtg/DIKM7cZqxRZ0Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726W8 uniprotkb:Q726W7 intact:EBI-10066068|ensemblbacteria:AAS97459 intact:EBI-10066012|ensemblbacteria:AAS97460 psi-mi:q726w8_desvh(display_long)|uniprotkb:DVU_2988(locus name)|uniprotkb:pspA(gene name)|psi-mi:pspA(display_short) psi-mi:q726w7_desvh(display_long)|uniprotkb:DVU_2989(locus name)|uniprotkb:pspF(gene name)|psi-mi:pspF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066065|imex:IM-22740-61 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007157(PspA/IM30)|interpro:IPR014319(Phage shock protein A)|refseq:YP_012199.1|ensemblbacteria:AAS97459(transcript)|ensemblbacteria:DVU_2988(gene)|entrezgene/locuslink:2796302(identity) interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR014317(Transcriptional activator, PspF)|interpro:IPR025944|interpro:IPR027417|refseq:YP_012200.1|refseq:WP_010940248.1|ensemblbacteria:AAS97460(transcript)|ensemblbacteria:DVU_2989(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2796303(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.88" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:kZOFwGLeiw69CYg5DQQIFjgLdEo882 rogid:JIBOPJpQakjWd7+I9qKUlsFT0kU882 intact-crc:77E8AD3C46FB27DF|rigid:gjjAAeygFpNwWkSjKkEQn4XWz3U false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726X3 uniprotkb:Q726X4 intact:EBI-10066099|ensemblbacteria:AAS97454 intact:EBI-10066095|ensemblbacteria:AAS97453 psi-mi:leud_desvh(display_long)|uniprotkb:Alpha-IPM isomerase(gene name synonym)|uniprotkb:Isopropylmalate isomerase(gene name synonym)|uniprotkb:DVU_2983(locus name)|uniprotkb:leuD(gene name)|psi-mi:leuD(display_short) psi-mi:leuc_desvh(display_long)|uniprotkb:Alpha-IPM isomerase(gene name synonym)|uniprotkb:Isopropylmalate isomerase(gene name synonym)|uniprotkb:DVU_2982(locus name)|uniprotkb:leuC(gene name)|psi-mi:leuC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066103|imex:IM-22740-63 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033940|interpro:IPR000573(Aconitase A/isopropylmalate dehydratase small subunit, swivel)|interpro:IPR011827(3-isopropylmalate dehydratase, small subunit, subgroup)|interpro:IPR015928(Aconitase/3-isopropylmalate dehydratase, swivel)|refseq:YP_012194.1|refseq:WP_010940242.1|ensemblbacteria:AAS97454(transcript)|ensemblbacteria:DVU_2983(gene)|go:"GO:0003861"(3-isopropylmalate dehydratase activity)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|entrezgene/locuslink:2796297(identity) interpro:IPR033941|interpro:IPR001030(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha)|interpro:IPR006251(Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup)|interpro:IPR011826(Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic)|interpro:IPR015931(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3)|interpro:IPR018136|refseq:YP_012193.1|refseq:WP_010940241.1|ensemblbacteria:AAS97453(transcript)|ensemblbacteria:DVU_2982(gene)|go:"GO:0003861"(3-isopropylmalate dehydratase activity)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036008|entrezgene/locuslink:2796296(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:6v9ADe8X/uNq0OIGkaw+jevsVis882 rogid:pLJ37zhPWm2JON8lTI0HnHv1Dy8882 intact-crc:072E263623A2326D|rigid:xiPyMko7AS5o3ttmdgzO208Nfak false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C27 uniprotkb:Q726Y0 intact:EBI-10066129|ensemblbacteria:AAS95935 intact:EBI-10066132|ensemblbacteria:AAS97447 psi-mi:q72c27_desvh(display_long)|uniprotkb:DVU_1457(locus name) psi-mi:q726y0_desvh(display_long)|uniprotkb:DVU_2976(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066135|imex:IM-22740-65 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:5NII|interpro:IPR023753|refseq:YP_010676.1|refseq:WP_010938750.1|ensemblbacteria:AAS95935(transcript)|ensemblbacteria:DVU_1457(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036188|entrezgene/locuslink:2794825(identity) interpro:IPR007553(Protein of unknown function DUF523)|interpro:IPR013560(Protein of unknown function DUF1722)|refseq:YP_012187.1|refseq:WP_010940235.1|ensemblbacteria:AAS97447(transcript)|ensemblbacteria:DVU_2976(gene)|entrezgene/locuslink:2796290(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.92" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:qY4uG41GwOIJgNOzdC8ip/bq8GI882 rogid:VtB9stBu/NtQBiEcBDs+HH2pLE8882 intact-crc:35A5F4E9BB758D35|rigid:fMdaF2tuqBhm2kzRH4jdv3qIe0k false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E96 uniprotkb:Q726Y3 intact:EBI-10066154|ensemblbacteria:AAS95163 intact:EBI-10066148|ensemblbacteria:AAS97444 psi-mi:q72e96_desvh(display_long)|uniprotkb:DVU_0682(locus name) psi-mi:q726y3_desvh(display_long)|uniprotkb:DVU_2973(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066151|imex:IM-22740-66 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR015927(Peptidase S24, S26A, S26B and S26C)|interpro:IPR010744(Bacteriophage CI repressor)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|refseq:YP_009904.1|ensemblbacteria:AAS95163(transcript)|ensemblbacteria:DVU_0682(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|interpro:IPR001387(Helix-turn-helix type 3)|interpro:IPR036286|interpro:IPR039418|entrezgene/locuslink:2795332(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012184.1|refseq:WP_010940232.1|ensemblbacteria:AAS97444(transcript)|ensemblbacteria:DVU_2973(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2796287(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.91" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:rBvI+dN+m7sv712cwf+s8bC1I2Q882 rogid:XVJm/0Y4aonzgyfUQTeJZvq03wI882 intact-crc:B68E6185D44364C7|rigid:l4WvBwCWt++J0O/RESUnkpPc8Cw false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726Z0 uniprotkb:Q72CM6 intact:EBI-10066186|ensemblbacteria:AAS97437 intact:EBI-10066180|ensemblbacteria:AAS95735 psi-mi:q726z0_desvh(display_long)|uniprotkb:DVU_2966(locus name) psi-mi:q72cm6_desvh(display_long)|uniprotkb:DVU_1257(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066183|imex:IM-22740-68 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR011006(CheY-like)|refseq:YP_012177.1|interpro:IPR039420|refseq:WP_010940225.1|ensemblbacteria:AAS97437(transcript)|ensemblbacteria:DVU_2966(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|entrezgene/locuslink:2796280(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_010476.1|refseq:WP_010938553.1|ensemblbacteria:AAS95735(transcript)|ensemblbacteria:DVU_1257(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2794603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.53" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:4n6hm6JUhJniDWGB91VpuSbN11o882 rogid:ruXcKfPiOxTsYJSnCzXA90m2O+o882 intact-crc:8EFF51934C59090D|rigid:l0XD1qj9jsRBaDERbXavHwmmGFA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C0 uniprotkb:Q72AL8 intact:EBI-10066250|ensemblbacteria:AAS97407 intact:EBI-10066244|ensemblbacteria:AAS96450 psi-mi:gpma_desvh(display_long)|uniprotkb:gpm(gene name synonym)|uniprotkb:DVU_2935(locus name)|uniprotkb:gpmA(gene name)|psi-mi:gpmA(display_short) psi-mi:q72al8_desvh(display_long)|uniprotkb:DVU_1974(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066247|imex:IM-22740-71 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001345(Phosphoglycerate/bisphosphoglycerate mutase)|interpro:IPR005952(Phosphoglycerate mutase 1)|interpro:IPR013078(Phosphoglycerate mutase)|interpro:IPR029033|refseq:YP_012147.1|refseq:WP_010940195.1|ensemblbacteria:AAS97407(transcript)|ensemblbacteria:DVU_2935(gene)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0046538"(2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity)|entrezgene/locuslink:2793973(identity) interpro:IPR023753|refseq:YP_011191.1|refseq:WP_010939260.1|ensemblbacteria:AAS96450(transcript)|ensemblbacteria:DVU_1974(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036188|entrezgene/locuslink:2795988(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.94" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:+bQP8/z+NmcGQjtcM5ZfLItjzVo882 rogid:iz7G+27COBziXzPRsyHptaObtAE882 intact-crc:5B2278A551884301|rigid:uXe3ESvOiZNYDM0yB0BG5kzAefk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C0 uniprotkb:Q72AS2 intact:EBI-10066250|ensemblbacteria:AAS97407 intact:EBI-10066241|ensemblbacteria:AAS96395 psi-mi:gpma_desvh(display_long)|uniprotkb:gpm(gene name synonym)|uniprotkb:DVU_2935(locus name)|uniprotkb:gpmA(gene name)|psi-mi:gpmA(display_short) psi-mi:q72as2_desvh(display_long)|uniprotkb:DVU_1919(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066247|imex:IM-22740-71 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001345(Phosphoglycerate/bisphosphoglycerate mutase)|interpro:IPR005952(Phosphoglycerate mutase 1)|interpro:IPR013078(Phosphoglycerate mutase)|interpro:IPR029033|refseq:YP_012147.1|refseq:WP_010940195.1|ensemblbacteria:AAS97407(transcript)|ensemblbacteria:DVU_2935(gene)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0046538"(2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity)|entrezgene/locuslink:2793973(identity) interpro:IPR000671(Peptidase A31, hydrogen uptake protein)|interpro:IPR023430|refseq:YP_011136.1|refseq:WP_010939205.1|ensemblbacteria:AAS96395(transcript)|ensemblbacteria:DVU_1919(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008233"(peptidase activity)|entrezgene/locuslink:2793335(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:+bQP8/z+NmcGQjtcM5ZfLItjzVo882 rogid:UPHJGAF+FsaEQEpiIkOGiSMdKbA882 intact-crc:5B2278A551884301|rigid:uXe3ESvOiZNYDM0yB0BG5kzAefk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q726S4 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066199|imex:IM-22740-69 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.60" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:612D0A7FF20942B2|rigid:TBFrmo4sLBARqETWaAQ8p45Vbvc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q729E7 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10065752|ensemblbacteria:AAS96877 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q729e7_desvh(display_long)|uniprotkb:DVU_2404(locus name)|uniprotkb:hdrC(gene name)|psi-mi:hdrC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066199|imex:IM-22740-69 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017900|refseq:YP_011617.1|refseq:WP_010939676.1|ensemblbacteria:AAS96877(transcript)|ensemblbacteria:DVU_2404(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794489(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:w5ZLCx6dXClNwQ7fKJyBjmtiEf0882 intact-crc:612D0A7FF20942B2|rigid:TBFrmo4sLBARqETWaAQ8p45Vbvc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q72EX0 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10066202|ensemblbacteria:AAS94931 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q72ex0_desvh(display_long)|uniprotkb:GDP-D-mannose dehydratase(gene name synonym)|uniprotkb:DVU_0448(locus name)|uniprotkb:gmd(gene name)|psi-mi:gmd(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066199|imex:IM-22740-69 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR006368(GDP-mannose 4,6-dehydratase)|interpro:IPR016040("NAD(P)-binding")|refseq:WP_010937755.1|refseq:YP_009672.1|ensemblbacteria:AAS94931(transcript)|ensemblbacteria:DVU_0448(gene)|go:"GO:0008446"(GDP-mannose 4,6-dehydratase activity)|go:"GO:0019673"(GDP-mannose metabolic process)|go:"GO:0070401"(NADP+ binding)|interpro:IPR036291|entrezgene/locuslink:2796651(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.46" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:16r92wZ0mtFpXMYLNV/s57Z8qvY882 intact-crc:612D0A7FF20942B2|rigid:TBFrmo4sLBARqETWaAQ8p45Vbvc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q726S3 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066199|imex:IM-22740-69 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.61" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:612D0A7FF20942B2|rigid:TBFrmo4sLBARqETWaAQ8p45Vbvc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q725M7 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10066303|ensemblbacteria:AAS97712 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:rpoz_desvh(display_long)|uniprotkb:RNA polymerase omega subunit(gene name synonym)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:DVU_3242(locus name)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066300|imex:IM-22740-73 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|refseq:YP_012452.1|refseq:WP_010940500.1|ensemblbacteria:AAS97712(transcript)|ensemblbacteria:DVU_3242(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR036161|entrezgene/locuslink:2793892(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.71" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:O6sSrgt2kCmVvFu06S0wwA/xCy4882 intact-crc:853C093E54DCE116|rigid:G84IPJWLfs5nymv7mdjeF3WeZWc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q727C7 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066300|imex:IM-22740-73 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:853C093E54DCE116|rigid:G84IPJWLfs5nymv7mdjeF3WeZWc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q72BK7 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10066288|ensemblbacteria:AAS96106 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:q72bk7_desvh(display_long)|uniprotkb:DVU_1628(locus name)|uniprotkb:rpoN(gene name)|psi-mi:rpoN(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066300|imex:IM-22740-73 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) interpro:IPR038709|interpro:IPR000394(RNA polymerase sigma factor 54)|interpro:IPR007046(RNA polymerase sigma factor 54, core-binding)|interpro:IPR007634(RNA polymerase sigma factor 54, DNA-binding)|refseq:YP_010847.1|refseq:WP_010938919.1|ensemblbacteria:AAS96106(transcript)|ensemblbacteria:DVU_1628(gene)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0016987"(sigma factor activity)|entrezgene/locuslink:2796092(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.48" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:Hsh94f2qyUMd9e7D+NRWbRML/uo882 intact-crc:853C093E54DCE116|rigid:G84IPJWLfs5nymv7mdjeF3WeZWc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q728Z2 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10066292|ensemblbacteria:AAS96932 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066300|imex:IM-22740-73 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 intact-crc:853C093E54DCE116|rigid:G84IPJWLfs5nymv7mdjeF3WeZWc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q72CF4 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066300|imex:IM-22740-73 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:853C093E54DCE116|rigid:G84IPJWLfs5nymv7mdjeF3WeZWc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C6 uniprotkb:Q728Z3 intact:EBI-10065699|ensemblbacteria:AAS97401 intact:EBI-10066285|ensemblbacteria:AAS96931 psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066300|imex:IM-22740-73 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 intact-crc:853C093E54DCE116|rigid:G84IPJWLfs5nymv7mdjeF3WeZWc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C7 uniprotkb:Q727C6 intact:EBI-10066295|ensemblbacteria:AAS97400 intact:EBI-10065699|ensemblbacteria:AAS97401 psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066341|imex:IM-22740-74 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 intact-crc:D872C67347A2C44C|rigid:rjrNP5MKjtOHlZE+y5bRXR9wFi8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C7 uniprotkb:Q72BK7 intact:EBI-10066295|ensemblbacteria:AAS97400 intact:EBI-10066288|ensemblbacteria:AAS96106 psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:q72bk7_desvh(display_long)|uniprotkb:DVU_1628(locus name)|uniprotkb:rpoN(gene name)|psi-mi:rpoN(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066341|imex:IM-22740-74 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) interpro:IPR038709|interpro:IPR000394(RNA polymerase sigma factor 54)|interpro:IPR007046(RNA polymerase sigma factor 54, core-binding)|interpro:IPR007634(RNA polymerase sigma factor 54, DNA-binding)|refseq:YP_010847.1|refseq:WP_010938919.1|ensemblbacteria:AAS96106(transcript)|ensemblbacteria:DVU_1628(gene)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0016987"(sigma factor activity)|entrezgene/locuslink:2796092(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.29" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 rogid:Hsh94f2qyUMd9e7D+NRWbRML/uo882 intact-crc:D872C67347A2C44C|rigid:rjrNP5MKjtOHlZE+y5bRXR9wFi8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C7 uniprotkb:Q72CF4 intact:EBI-10066295|ensemblbacteria:AAS97400 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066341|imex:IM-22740-74 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:D872C67347A2C44C|rigid:rjrNP5MKjtOHlZE+y5bRXR9wFi8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F3 uniprotkb:Q727F4 intact:EBI-10066383|ensemblbacteria:AAS97374 intact:EBI-10066379|ensemblbacteria:AAS97373 psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:pyrb_desvh(display_long)|uniprotkb:Aspartate transcarbamylase(gene name synonym)|uniprotkb:DVU_2901(locus name)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066387|imex:IM-22740-76 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|entrezgene/locuslink:2793932(identity) interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|refseq:YP_012113.1|refseq:WP_010940161.1|ensemblbacteria:AAS97373(transcript)|ensemblbacteria:DVU_2901(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR036901|entrezgene/locuslink:2793931(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 rogid:W13RREVUawgRc7XxXkARSwTUTDA882 intact-crc:46A77981E45EA94B|rigid:56aUpNUl+2dsFYDITRe9NKKfok8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F3 uniprotkb:Q727F4 intact:EBI-10066383|ensemblbacteria:AAS97374 intact:EBI-10066379|ensemblbacteria:AAS97373 psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:pyrb_desvh(display_long)|uniprotkb:Aspartate transcarbamylase(gene name synonym)|uniprotkb:DVU_2901(locus name)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066413|imex:IM-22740-78 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|entrezgene/locuslink:2793932(identity) interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|refseq:YP_012113.1|refseq:WP_010940161.1|ensemblbacteria:AAS97373(transcript)|ensemblbacteria:DVU_2901(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR036901|entrezgene/locuslink:2793931(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 rogid:W13RREVUawgRc7XxXkARSwTUTDA882 intact-crc:EA21B1E7850F78F2|rigid:56aUpNUl+2dsFYDITRe9NKKfok8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727H0 uniprotkb:Q727T9 intact:EBI-10066429|ensemblbacteria:AAS97357 intact:EBI-10066426|ensemblbacteria:AAS97237 psi-mi:q727h0_desvh(display_long)|uniprotkb:DVU_2885(locus name) psi-mi:q727t9_desvh(display_long)|uniprotkb:DVU_2765(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066432|imex:IM-22740-79 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001670(Iron-containing alcohol dehydrogenase)|interpro:IPR018211|refseq:YP_012097.1|refseq:WP_010940145.1|ensemblbacteria:AAS97357(transcript)|ensemblbacteria:DVU_2885(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR039697|entrezgene/locuslink:2793915(identity) interpro:IPR001279(Beta-lactamase-like)|refseq:YP_011977.1|refseq:WP_010940031.1|ensemblbacteria:AAS97237(transcript)|ensemblbacteria:DVU_2765(gene)|interpro:IPR036866|entrezgene/locuslink:2796315(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:vjmvC/85ozqUcIOkfpT+qZQLgyg882 rogid:1lSzPGPfrXcrxcozEq34U5edV1U882 intact-crc:A10DBD0E565EF44A|rigid:7nzJBehwU9PwH5yx+SI/w3uisf8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727L4 uniprotkb:Q72AG1 intact:EBI-10066464|ensemblbacteria:AAS97313 intact:EBI-10066458|ensemblbacteria:AAS96509 psi-mi:q727l4_desvh(display_long)|uniprotkb:DVU_2841(locus name) psi-mi:q72ag1_desvh(display_long)|uniprotkb:DVU_2034(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066461|imex:IM-22740-81 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR015109(Restriction endonuclease, type II, EcoRII, C terminal)|refseq:YP_012053.1|refseq:WP_010940107.1|ensemblbacteria:AAS97313(transcript)|ensemblbacteria:DVU_2841(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0009036"(type II site-specific deoxyribonuclease activity)|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR038365|entrezgene/locuslink:2796395(identity) refseq:YP_011249.1|refseq:WP_010939314.1|ensemblbacteria:AAS96509(transcript)|ensemblbacteria:DVU_2034(gene)|entrezgene/locuslink:2794832(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.50" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:KL9ahO2iR91Plnu/1qcxmjgb4mc882 rogid:5oCeaDZOyL0k2Teb+9k9Jn7Cpd8882 intact-crc:BE551CF39C8B80D4|rigid:Uk4+ggPFrSzedKfC7EHjCCrmaGc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727L6 uniprotkb:Q727L7 intact:EBI-10066483|ensemblbacteria:AAS97311 intact:EBI-10066477|ensemblbacteria:AAS97310 psi-mi:q727l6_desvh(display_long)|uniprotkb:DVU_2839(locus name) psi-mi:q727l7_desvh(display_long)|uniprotkb:DVU_2838(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066480|imex:IM-22740-82 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_012051.1|refseq:WP_010940105.1|ensemblbacteria:AAS97311(transcript)|ensemblbacteria:DVU_2839(gene)|entrezgene/locuslink:2796393(identity) interpro:IPR003607(Metal-dependent phosphohydrolase, HD region)|interpro:IPR006674(Metal-dependent phosphohydrolase, HD region, subdomain)|refseq:YP_012050.1|refseq:WP_010940104.1|ensemblbacteria:AAS97310(transcript)|ensemblbacteria:DVU_2838(gene)|entrezgene/locuslink:2796392(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:P9rj9D/b3vmfRz+AloNg5LuHfuY882 rogid:IvQEnBYAc875GSwofnIsrKCh6JM882 intact-crc:B4EAB398E079CBAD|rigid:CvPRa5ftc7NFHylUh8yUVQVbV30 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727N0 uniprotkb:Q728C6 intact:EBI-10066541|ensemblbacteria:AAS97297 intact:EBI-10066547|ensemblbacteria:AAS97149 psi-mi:islb_desvh(display_long)|uniprotkb:iseH(gene name)|psi-mi:iseH(display_short)|uniprotkb:GRE activase IseH(gene name synonym)|uniprotkb:Glycyl-radical enzyme activating enzyme IseH(gene name synonym)|uniprotkb:DVU_2825(locus name) psi-mi:q728c6_desvh(display_long)|uniprotkb:DVU_2677(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066544|imex:IM-22740-86 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001989(Radical-activating enzyme, conserved site)|interpro:IPR007197(Radical SAM)|interpro:IPR012839(Glycyl radical enzyme-activating)|interpro:IPR017896|refseq:WP_010940091.1|refseq:YP_012037.1|ensemblbacteria:AAS97297(transcript)|ensemblbacteria:DVU_2825(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046306"(alkanesulfonate catabolic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034457|interpro:IPR040074|entrezgene/locuslink:2796379(identity) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR011006(CheY-like)|refseq:YP_011889.1|refseq:WP_010939946.1|ensemblbacteria:AAS97149(transcript)|ensemblbacteria:DVU_2677(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|interpro:IPR036890|entrezgene/locuslink:2795048(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zQ7Q0DDXXj2DvvTRWpU2UcHGcPs882 rogid:B24ddCejqBRnpDy5PH7un5ttHZg882 intact-crc:90C7623D140A77CA|rigid:OrGgQAj7hpUQdzuE7eXuoqinZdQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727L7 uniprotkb:Q727L6 intact:EBI-10066477|ensemblbacteria:AAS97310 intact:EBI-10066483|ensemblbacteria:AAS97311 psi-mi:q727l7_desvh(display_long)|uniprotkb:DVU_2838(locus name) psi-mi:q727l6_desvh(display_long)|uniprotkb:DVU_2839(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066509|imex:IM-22740-84 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003607(Metal-dependent phosphohydrolase, HD region)|interpro:IPR006674(Metal-dependent phosphohydrolase, HD region, subdomain)|refseq:YP_012050.1|refseq:WP_010940104.1|ensemblbacteria:AAS97310(transcript)|ensemblbacteria:DVU_2838(gene)|entrezgene/locuslink:2796392(identity) refseq:YP_012051.1|refseq:WP_010940105.1|ensemblbacteria:AAS97311(transcript)|ensemblbacteria:DVU_2839(gene)|entrezgene/locuslink:2796393(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:IvQEnBYAc875GSwofnIsrKCh6JM882 rogid:P9rj9D/b3vmfRz+AloNg5LuHfuY882 intact-crc:F26CA7DF20109E63|rigid:CvPRa5ftc7NFHylUh8yUVQVbV30 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725Y7 uniprotkb:Q727L9 intact:EBI-10066525|ensemblbacteria:AAS97756 intact:EBI-10066522|ensemblbacteria:AAS97308 psi-mi:q725y7_desvh(display_long)|uniprotkb:DVU_3287(locus name) psi-mi:q727l9_desvh(display_long)|uniprotkb:DVU_2836(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066528|imex:IM-22740-85 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001173(Glycosyl transferase, family 2)|interpro:IPR029044|refseq:YP_012496.1|ensemblbacteria:AAS97756(transcript)|ensemblbacteria:DVU_3287(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2796011(identity) interpro:IPR001387(Helix-turn-helix type 3)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|refseq:YP_012048.1|ensemblbacteria:AAS97308(transcript)|ensemblbacteria:DVU_2836(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2796390(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:hKVhTSe/o5xpsxoB9K3IKk4f/6Q882 rogid:FBZ4WawoqG1zxE3JliOmBDl28jM882 intact-crc:818D8F8C3B8B7246|rigid:FiNcAlstBGVeERNvtuxJxV1TaHY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U7 uniprotkb:Q727F8 intact:EBI-10066608|ensemblbacteria:AAS97229 intact:EBI-10066614|ensemblbacteria:AAS97369 psi-mi:q727u7_desvh(display_long)|uniprotkb:mqnC(gene name)|psi-mi:mqnC(display_short)|uniprotkb:Dehypoxanthine futalosine cyclase(gene name synonym)|uniprotkb:Menaquinone biosynthetic enzyme MqnC(gene name synonym)|uniprotkb:DVU_2757(locus name) psi-mi:q727f8_desvh(display_long)|uniprotkb:DVU_2897(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066611|imex:IM-22740-90 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022431|refseq:WP_010940023.1|refseq:YP_011969.1|ensemblbacteria:AAS97229(transcript)|ensemblbacteria:DVU_2757(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016765"("transferase activity, transferring alkyl or aryl (other than methyl) groups")|go:"GO:0046992"(oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034405|entrezgene/locuslink:2794030(identity) refseq:WP_010940157.1|interpro:IPR002737(Protein of unknown function DUF52)|refseq:YP_012109.1|ensemblbacteria:AAS97369(transcript)|ensemblbacteria:DVU_2897(gene)|entrezgene/locuslink:2793927(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.28" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:xfEZwr+QU1wyHEErrzqsORFf6SE882 rogid:iomGR6d1/uVoy1VhN1hIsjEFacE882 intact-crc:55E2EDD258A0BD6A|rigid:0/pB0olVpkwbK+ghUyFuZa89b0g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U7 uniprotkb:Q727U8 intact:EBI-10066608|ensemblbacteria:AAS97229 intact:EBI-10066617|ensemblbacteria:AAS97228 psi-mi:q727u7_desvh(display_long)|uniprotkb:mqnC(gene name)|psi-mi:mqnC(display_short)|uniprotkb:Dehypoxanthine futalosine cyclase(gene name synonym)|uniprotkb:Menaquinone biosynthetic enzyme MqnC(gene name synonym)|uniprotkb:DVU_2757(locus name) psi-mi:q727u8_desvh(display_long)|uniprotkb:mqnE(gene name)|psi-mi:mqnE(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnE(gene name synonym)|uniprotkb:DVU_2756(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066611|imex:IM-22740-90 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022431|refseq:WP_010940023.1|refseq:YP_011969.1|ensemblbacteria:AAS97229(transcript)|ensemblbacteria:DVU_2757(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016765"("transferase activity, transferring alkyl or aryl (other than methyl) groups")|go:"GO:0046992"(oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034405|entrezgene/locuslink:2794030(identity) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022432|refseq:YP_011968.1|refseq:WP_010940022.1|ensemblbacteria:AAS97228(transcript)|ensemblbacteria:DVU_2756(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102573"(aminodeoxyfutalosine synthase activity)|interpro:IPR034405|entrezgene/locuslink:2794029(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:xfEZwr+QU1wyHEErrzqsORFf6SE882 rogid:bb3wBr3eiO33UmFoNQPmFaoQ0Ok882 intact-crc:55E2EDD258A0BD6A|rigid:0/pB0olVpkwbK+ghUyFuZa89b0g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Z1 uniprotkb:Q727U0 intact:EBI-10066579|ensemblbacteria:AAS96679 intact:EBI-10066595|ensemblbacteria:AAS97236 psi-mi:q729z1_desvh(display_long)|uniprotkb:DVU_2206(locus name) psi-mi:q727u0_desvh(display_long)|uniprotkb:DVU_2764(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066592|imex:IM-22740-89 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR013559(YheO-like)|refseq:YP_011419.1|refseq:WP_010939481.1|ensemblbacteria:AAS96679(transcript)|ensemblbacteria:DVU_2206(gene)|interpro:IPR039445|interpro:IPR039446|entrezgene/locuslink:2793669(identity) interpro:IPR000415(Nitroreductase)|interpro:IPR029479|refseq:YP_011976.1|refseq:WP_010940030.1|ensemblbacteria:AAS97236(transcript)|ensemblbacteria:DVU_2764(gene)|go:"GO:0016491"(oxidoreductase activity)|entrezgene/locuslink:2796314(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:QzS5rNyka7uszDe8b3WhKQsKkG0882 rogid:GAx6cG7JSSfWpLA1qsUElqAjvJ0882 intact-crc:6F7B09FA98DC788F|rigid:cynjXwZia42t/fubjwxAPt3hRSo false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Z1 uniprotkb:Q727N6 intact:EBI-10066579|ensemblbacteria:AAS96679 intact:EBI-10066573|ensemblbacteria:AAS97291 psi-mi:q729z1_desvh(display_long)|uniprotkb:DVU_2206(locus name) psi-mi:q727n6_desvh(display_long)|uniprotkb:DVU_2819(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066576|imex:IM-22740-88 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR013559(YheO-like)|refseq:YP_011419.1|refseq:WP_010939481.1|ensemblbacteria:AAS96679(transcript)|ensemblbacteria:DVU_2206(gene)|interpro:IPR039445|interpro:IPR039446|entrezgene/locuslink:2793669(identity) interpro:IPR001647(Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal)|interpro:IPR009057(Homeodomain-like)|refseq:YP_012031.1|refseq:WP_010940085.1|ensemblbacteria:AAS97291(transcript)|ensemblbacteria:DVU_2819(gene)|go:"GO:0003677"(DNA binding)|interpro:IPR036271|interpro:IPR039536|entrezgene/locuslink:2793780(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:QzS5rNyka7uszDe8b3WhKQsKkG0882 rogid:lUEIbDTeyiODPGTZvIFVCdEzZxo882 intact-crc:455E809681BF6ACA|rigid:I1xNFYVdmiLR+rvIH23QPlxBtw0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728D4 uniprotkb:Q727F2 intact:EBI-10066654|ensemblbacteria:AAS97141 intact:EBI-10066657|ensemblbacteria:AAS97375 psi-mi:q728d4_desvh(display_long)|uniprotkb:DVU_2669(locus name) psi-mi:q727f2_desvh(display_long)|uniprotkb:DVU_2903(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066660|imex:IM-22740-92 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR009252(Protein of unknown function DUF904)|refseq:YP_011881.1|refseq:WP_010939938.1|ensemblbacteria:AAS97141(transcript)|ensemblbacteria:DVU_2669(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0090529"(cell septum assembly)|entrezgene/locuslink:2796236(identity) interpro:IPR006674(Metal-dependent phosphohydrolase, HD region, subdomain)|refseq:YP_012115.1|refseq:WP_010940163.1|ensemblbacteria:AAS97375(transcript)|ensemblbacteria:DVU_2903(gene)|entrezgene/locuslink:2793933(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Y0lpJ9N1HoulRyR3vcl5T+8xv0c882 rogid:0/bXQjFgNaeeOynT3rcrV2FHMqY882 intact-crc:0E37980A8DCE54F3|rigid:JnmGzryadFBCoJnrnSeNLBWfMOg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728D4 uniprotkb:Q728S1 intact:EBI-10066654|ensemblbacteria:AAS97141 intact:EBI-10066651|ensemblbacteria:AAS97004 psi-mi:q728d4_desvh(display_long)|uniprotkb:DVU_2669(locus name) psi-mi:q728s1_desvh(display_long)|uniprotkb:DVU_2532(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066660|imex:IM-22740-92 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR009252(Protein of unknown function DUF904)|refseq:YP_011881.1|refseq:WP_010939938.1|ensemblbacteria:AAS97141(transcript)|ensemblbacteria:DVU_2669(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0090529"(cell septum assembly)|entrezgene/locuslink:2796236(identity) interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|refseq:YP_011744.1|refseq:WP_010939802.1|ensemblbacteria:DVU_2532(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|ensemblbacteria:AAS97004(transcript)|entrezgene/locuslink:2795718(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Y0lpJ9N1HoulRyR3vcl5T+8xv0c882 rogid:MC+kefGH3RcEtp+dJzYy8Ml94mk882 intact-crc:0E37980A8DCE54F3|rigid:JnmGzryadFBCoJnrnSeNLBWfMOg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BU5 uniprotkb:Q728G0 intact:EBI-10066693|ensemblbacteria:AAS96017 intact:EBI-10066697|ensemblbacteria:AAS97115 psi-mi:q72bu5_desvh(display_long)|uniprotkb:DVU_1539(locus name)|uniprotkb:glpX(gene name)|psi-mi:glpX(display_short) psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066690|imex:IM-22740-94 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004464(GlpX)|refseq:YP_010758.1|refseq:WP_010938831.1|ensemblbacteria:AAS96017(transcript)|ensemblbacteria:DVU_1539(gene)|go:"GO:0006071"(glycerol metabolic process)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2793689(identity) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:CT97gy9emJCEZP/QFHye+xB6Ccs882 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 intact-crc:1A9CD48706EE20CF|rigid:3++j5J2hjYRcFsStPyWAltVEYeU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728G0 uniprotkb:Q728L5 intact:EBI-10066697|ensemblbacteria:AAS97115 intact:EBI-10066767|ensemblbacteria:AAS97060 psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:q728l5_desvh(display_long)|uniprotkb:DVU_2588(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066764|imex:IM-22740-98 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|refseq:YP_011800.1|refseq:WP_010939858.1|ensemblbacteria:AAS97060(transcript)|ensemblbacteria:DVU_2588(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR036388|interpro:IPR039420|entrezgene/locuslink:2796366(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.35" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 rogid:FoRhnFSqK++XOzxbzYRNyQzoXjk882 intact-crc:5E19D80A666A431F|rigid:gCS4wuTG/vHjAa2Qc991/d6afAE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725N7 uniprotkb:Q728I4 intact:EBI-10066724|ensemblbacteria:AAS97856 intact:EBI-10066730|ensemblbacteria:AAS97091 psi-mi:q725n7_desvh(display_long)|uniprotkb:DVU_3387(locus name) psi-mi:q728i4_desvh(display_long)|uniprotkb:DVU_2619(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066727|imex:IM-22740-96 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR023346|refseq:YP_012596.1|refseq:WP_010940642.1|ensemblbacteria:AAS97856(transcript)|ensemblbacteria:DVU_3387(gene)|entrezgene/locuslink:2796406(identity) interpro:IPR021729|interpro:IPR025303|refseq:YP_011831.1|refseq:WP_010939888.1|ensemblbacteria:AAS97091(transcript)|ensemblbacteria:DVU_2619(gene)|interpro:IPR037126|entrezgene/locuslink:2795236(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.83" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ylVOJ3TiDJ4ZrYV93nWFgr9cdzo882 rogid:sIGPV92gX9El7AkBZINgoayPufA882 intact-crc:665C83C853B2EBF1|rigid:GWFllw7Aizbk15aTc1e10PU0t1o false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728J5 uniprotkb:Q72E05 intact:EBI-10066743|ensemblbacteria:AAS97080 intact:EBI-10066750|ensemblbacteria:AAS95254 psi-mi:q728j5_desvh(display_long)|uniprotkb:DVU_2608(locus name)|uniprotkb:motA-3(gene name)|psi-mi:motA-3(display_short) psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066747|imex:IM-22740-97 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002898(MotA/TolQ/ExbB proton channel)|interpro:IPR000540(Flagellar motor protein MotA, conserved site)|interpro:IPR022522|refseq:YP_011820.1|refseq:WP_010939877.1|ensemblbacteria:AAS97080(transcript)|ensemblbacteria:DVU_2608(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0006811"(ion transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0097588"(archaeal or bacterial-type flagellum-dependent cell motility)|entrezgene/locuslink:2793904(identity) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.69" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:GsiE310hXgpqFVVTnMPM9xKhlqQ882 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 intact-crc:6D9CF469616F750A|rigid:z0NWVa4/38W1MLhXOvWr3ckz/Ko false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727T9 uniprotkb:Q728M7 intact:EBI-10066426|ensemblbacteria:AAS97237 intact:EBI-10066793|ensemblbacteria:AAS97048 psi-mi:q727t9_desvh(display_long)|uniprotkb:DVU_2765(locus name) psi-mi:q728m7_desvh(display_long)|uniprotkb:DVU_2576(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066796|imex:IM-22740-100 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001279(Beta-lactamase-like)|refseq:YP_011977.1|refseq:WP_010940031.1|ensemblbacteria:AAS97237(transcript)|ensemblbacteria:DVU_2765(gene)|interpro:IPR036866|entrezgene/locuslink:2796315(identity) interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013563(Oligopeptide/dipeptide ABC transporter, C-terminal)|interpro:IPR017871|interpro:IPR027417|refseq:YP_011788.1|refseq:WP_010939846.1|ensemblbacteria:AAS97048(transcript)|ensemblbacteria:DVU_2576(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015833"(peptide transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2796269(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.94" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:1lSzPGPfrXcrxcozEq34U5edV1U882 rogid:GPOEw8bhA3hPDQr0rLNKlf89P7M882 intact-crc:BFE0F87CC073D093|rigid:oOMnzeMzwMv16dBRR1XNh+QHc6k false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DF8 uniprotkb:Q728Q6 intact:EBI-10066809|ensemblbacteria:AAS95451 intact:EBI-10066815|ensemblbacteria:AAS97019 psi-mi:q72df8_desvh(display_long)|uniprotkb:DVU_0971(locus name) psi-mi:q728q6_desvh(display_long)|uniprotkb:DVU_2547(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066812|imex:IM-22740-101 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001453(Molybdopterin binding)|interpro:IPR008284(Molybdenum cofactor biosynthesis, conserved site)|ensemblbacteria:AAS95451(transcript)|ensemblbacteria:DVU_0971(gene)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|interpro:IPR036425|entrezgene/locuslink:2795103(identity) interpro:IPR000595(Cyclic nucleotide-binding)|interpro:IPR012318(Helix-turn-helix motif, Crp-type)|interpro:IPR014710(RmlC-like jelly roll fold)|interpro:IPR018490|refseq:YP_011759.1|refseq:WP_010939817.1|ensemblbacteria:AAS97019(transcript)|ensemblbacteria:DVU_2547(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2796121(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.43" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:rpNi8N/zlKbhMD8rdqY9PqR7seI882 rogid:Dm3+udgUiw/Fagb3qNlyEMP+JlI882 intact-crc:CC0B154DFECF92A4|rigid:84USD94B4T+DeFzIGuWavfH/klg false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728S0 uniprotkb:Q728R9 intact:EBI-10066832|ensemblbacteria:AAS97005 intact:EBI-10066828|ensemblbacteria:AAS97006 psi-mi:syfb_desvh(display_long)|uniprotkb:Phenylalanyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:DVU_2533(locus name)|uniprotkb:pheT(gene name)|psi-mi:pheT(display_short) psi-mi:syfa_desvh(display_long)|uniprotkb:Phenylalanyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:DVU_2534(locus name)|uniprotkb:pheS(gene name)|psi-mi:pheS(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066849|imex:IM-22740-103 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033714|interpro:IPR041616|interpro:IPR002547(tRNA-binding region)|interpro:IPR004532(Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial)|interpro:IPR005121(Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding)|interpro:IPR005146(B3/B4 tRNA-binding domain)|interpro:IPR005147(tRNA synthetase, B5)|interpro:IPR009061(Putative DNA binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR020825|refseq:YP_011745.1|refseq:WP_010939803.1|ensemblbacteria:AAS97005(transcript)|ensemblbacteria:DVU_2533(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004826"(phenylalanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006432"(phenylalanyl-tRNA aminoacylation)|interpro:IPR036690|entrezgene/locuslink:2795719(identity) interpro:IPR002319(Phenylalanyl-tRNA synthetase, class IIc)|interpro:IPR004188(Phenylalanyl-tRNA synthetase, class II, N-terminal)|interpro:IPR004529(Phenylalanyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR010978(tRNA-binding arm)|interpro:IPR022911|refseq:YP_011746.1|interpro:IPR004530(Phenylalanyl-tRNA synthetase, class IIc, mitochondrial)|refseq:WP_010939804.1|ensemblbacteria:AAS97006(transcript)|ensemblbacteria:DVU_2534(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004826"(phenylalanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006432"(phenylalanyl-tRNA aminoacylation)|entrezgene/locuslink:2795720(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:M5KKtI51DqQ6nkdWC6SRIfl5s4c882 rogid:aiELm7w+ZvsH59BO0c+ku2JbKUo882 intact-crc:A0A68355C2DDEB2B|rigid:k12tDjKeWS5ZwPFFotxbVccO4Hg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728R9 uniprotkb:Q728S0 intact:EBI-10066828|ensemblbacteria:AAS97006 intact:EBI-10066832|ensemblbacteria:AAS97005 psi-mi:syfa_desvh(display_long)|uniprotkb:Phenylalanyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:DVU_2534(locus name)|uniprotkb:pheS(gene name)|psi-mi:pheS(display_short) psi-mi:syfb_desvh(display_long)|uniprotkb:Phenylalanyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:DVU_2533(locus name)|uniprotkb:pheT(gene name)|psi-mi:pheT(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066836|imex:IM-22740-102 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002319(Phenylalanyl-tRNA synthetase, class IIc)|interpro:IPR004188(Phenylalanyl-tRNA synthetase, class II, N-terminal)|interpro:IPR004529(Phenylalanyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR010978(tRNA-binding arm)|interpro:IPR022911|refseq:YP_011746.1|interpro:IPR004530(Phenylalanyl-tRNA synthetase, class IIc, mitochondrial)|refseq:WP_010939804.1|ensemblbacteria:AAS97006(transcript)|ensemblbacteria:DVU_2534(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004826"(phenylalanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006432"(phenylalanyl-tRNA aminoacylation)|entrezgene/locuslink:2795720(identity) interpro:IPR033714|interpro:IPR041616|interpro:IPR002547(tRNA-binding region)|interpro:IPR004532(Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial)|interpro:IPR005121(Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding)|interpro:IPR005146(B3/B4 tRNA-binding domain)|interpro:IPR005147(tRNA synthetase, B5)|interpro:IPR009061(Putative DNA binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR020825|refseq:YP_011745.1|refseq:WP_010939803.1|ensemblbacteria:AAS97005(transcript)|ensemblbacteria:DVU_2533(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004826"(phenylalanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006432"(phenylalanyl-tRNA aminoacylation)|interpro:IPR036690|entrezgene/locuslink:2795719(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:aiELm7w+ZvsH59BO0c+ku2JbKUo882 rogid:M5KKtI51DqQ6nkdWC6SRIfl5s4c882 intact-crc:E1A4EC5C15628407|rigid:k12tDjKeWS5ZwPFFotxbVccO4Hg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728X1 uniprotkb:Q728X0 intact:EBI-10066870|ensemblbacteria:AAS96953 intact:EBI-10066862 psi-mi:q728x1_desvh(display_long)|uniprotkb:DVU_2481(locus name) psi-mi:q728x0_desvh(display_long)|uniprotkb:DVU_2482(locus name)|uniprotkb:fdnG-2(gene name)|psi-mi:fdnG-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066883|imex:IM-22740-105 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|refseq:YP_011693.1|ensemblbacteria:AAS96953(transcript)|ensemblbacteria:DVU_2481(gene)|entrezgene/locuslink:2795663(identity) interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR006443(Formate dehydrogenase, alpha subunit, anaerobic)|interpro:IPR006655(Molybdopterin oxidoreductase, prokaryotic, conserved site)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_011694.1|refseq:WP_010939752.1|go:"GO:0008863"("formate dehydrogenase (NAD+) activity")|go:"GO:0009055"(electron transfer activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0045333"(cellular respiration)|go:"GO:0046872"(metal ion binding)|go:"GO:0047111"("formate dehydrogenase (cytochrome-c-553) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Xai4sfPBlGz5FuIUd3QRPDMEtyk882 rogid:UeHdNQzWHi+2qYGNZoRNm/DOzVM882 intact-crc:B3382C54A0BD70E5|rigid:0a57Wfg9Qpyr7jUN2qDOiy16heo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Y0 uniprotkb:Q729E0 intact:EBI-10066912|ensemblbacteria:AAS96944 intact:EBI-10066915|ensemblbacteria:AAS96884 psi-mi:q728y0_desvh(display_long)|uniprotkb:DVU_2472(locus name) psi-mi:q729e0_desvh(display_long)|uniprotkb:DVU_2411(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066909|imex:IM-22740-107 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004300(Glycoside hydrolase, family 57, core)|interpro:IPR011330(Glycoside hydrolase/deacetylase, beta/alpha-barrel)|interpro:IPR021923|refseq:YP_011684.1|refseq:WP_010939742.1|ensemblbacteria:AAS96944(transcript)|ensemblbacteria:DVU_2472(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0005975"(carbohydrate metabolic process)|entrezgene/locuslink:2795654(identity) interpro:IPR002048(Calcium-binding EF-hand)|interpro:IPR011992(EF-Hand type)|interpro:IPR018247|refseq:YP_011624.1|refseq:WP_010939683.1|ensemblbacteria:AAS96884(transcript)|ensemblbacteria:DVU_2411(gene)|go:"GO:0005509"(calcium ion binding)|entrezgene/locuslink:2794496(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:1VExzQOYhDPyCXuC12d2VBkLQY0882 rogid:2wrgsjUMZ4CGamffefIElhkzOrs882 intact-crc:35C8261F86FFA6DD|rigid:rt38O6I4u2tKewmD34GHCyRBMrY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728X1 uniprotkb:Q728X0 intact:EBI-10066870|ensemblbacteria:AAS96953 intact:EBI-10066862 psi-mi:q728x1_desvh(display_long)|uniprotkb:DVU_2481(locus name) psi-mi:q728x0_desvh(display_long)|uniprotkb:DVU_2482(locus name)|uniprotkb:fdnG-2(gene name)|psi-mi:fdnG-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066867|imex:IM-22740-104 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|refseq:YP_011693.1|ensemblbacteria:AAS96953(transcript)|ensemblbacteria:DVU_2481(gene)|entrezgene/locuslink:2795663(identity) interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR006443(Formate dehydrogenase, alpha subunit, anaerobic)|interpro:IPR006655(Molybdopterin oxidoreductase, prokaryotic, conserved site)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_011694.1|refseq:WP_010939752.1|go:"GO:0008863"("formate dehydrogenase (NAD+) activity")|go:"GO:0009055"(electron transfer activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0045333"(cellular respiration)|go:"GO:0046872"(metal ion binding)|go:"GO:0047111"("formate dehydrogenase (cytochrome-c-553) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795450(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Xai4sfPBlGz5FuIUd3QRPDMEtyk882 rogid:UeHdNQzWHi+2qYGNZoRNm/DOzVM882 intact-crc:CAF7A2FC9FB27A31|rigid:0a57Wfg9Qpyr7jUN2qDOiy16heo false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q727C7 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066973|imex:IM-22740-111 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.45" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:C21CAF81BE5937D9|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q72CF4 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066973|imex:IM-22740-111 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.93" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:C21CAF81BE5937D9|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q727C6 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10065699|ensemblbacteria:AAS97401 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066973|imex:IM-22740-111 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 intact-crc:C21CAF81BE5937D9|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q72G56 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10066976|ensemblbacteria:AAS94488 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:q72g56_desvh(display_long)|uniprotkb:DVU_0004(locus name)|uniprotkb:gyrA(gene name)|psi-mi:gyrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066973|imex:IM-22740-111 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR002205(DNA topoisomerase, type IIA, subunit A or C-terminal)|interpro:IPR005743(DNA gyrase, subunit A)|interpro:IPR006691(DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel)|interpro:IPR013757(DNA topoisomerase, type IIA, subunit A, alpha-helical)|interpro:IPR013758(DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta)|interpro:IPR013760(DNA topoisomerase, type IIA, central)|refseq:YP_009229.1|refseq:WP_010937315.1|ensemblbacteria:AAS94488(transcript)|ensemblbacteria:DVU_0004(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003918"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005694"(chromosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006265"(DNA topological change)|interpro:IPR035516|entrezgene/locuslink:2794973(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:y0l6ztLMSiOKp1NvD9LqUdIEm3g882 intact-crc:C21CAF81BE5937D9|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q728Z3 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10066285|ensemblbacteria:AAS96931 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066973|imex:IM-22740-111 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 intact-crc:C21CAF81BE5937D9|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Y1 uniprotkb:Q725J7 intact:EBI-10066941 intact:EBI-10066947|ensemblbacteria:AAS97646 psi-mi:q728y1_desvh(display_long)|uniprotkb:DVU_2471(locus name) psi-mi:q725j7_desvh(display_long)|uniprotkb:DVU_3176(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066944|imex:IM-22740-109 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011683.1|refseq:WP_010939741.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795653(identity) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028359|refseq:YP_012386.1|refseq:WP_010940434.1|ensemblbacteria:AAS97646(transcript)|ensemblbacteria:DVU_3176(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0016616"(oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)|go:"GO:0016628"(oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291|entrezgene/locuslink:2793826(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:QvnOJ0AqPbmooSgDAZf/1Ff8gBM882 rogid:qKn2i8XqdXdJRHd2gMiUsbAR24Y882 intact-crc:38E86FA8F679345D|rigid:bxLR/9YACgY4GMKGN4nyzUJOvNc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729B0 uniprotkb:Q729B1 intact:EBI-10067107|ensemblbacteria:AAS96914 intact:EBI-10067101|ensemblbacteria:AAS96913 psi-mi:q729b0_desvh(display_long)|uniprotkb:DVU_2442(locus name) psi-mi:q729b1_desvh(display_long)|uniprotkb:DVU_2441(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067104|imex:IM-22740-116 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR031107|interpro:IPR002068(Heat shock protein Hsp20)|interpro:IPR008978(HSP20-like chaperone)|refseq:YP_011654.1|refseq:WP_010939713.1|ensemblbacteria:AAS96914(transcript)|ensemblbacteria:DVU_2442(gene)|entrezgene/locuslink:2795433(identity) interpro:IPR002068(Heat shock protein Hsp20)|interpro:IPR008978(HSP20-like chaperone)|refseq:YP_011653.1|refseq:WP_010939712.1|ensemblbacteria:AAS96913(transcript)|ensemblbacteria:DVU_2441(gene)|entrezgene/locuslink:2795432(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:MAFRzGTlmUX0b9AVJqBCZuGytWw882 rogid:rrHJcml0eAY5Zm0+BNPJewXaXVM882 intact-crc:3F3CFCAA725BEC9A|rigid:q7a0aSfDsba6V+fbD2BA/n+NaIM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EP7 uniprotkb:Q729A8 intact:EBI-10067084|ensemblbacteria:AAS95004 intact:EBI-10067088|ensemblbacteria:AAS96916 psi-mi:fliw_desvh(display_long)|uniprotkb:DVU_0522(locus name)|uniprotkb:fliW(gene name)|psi-mi:fliW(display_short) psi-mi:q729a8_desvh(display_long)|uniprotkb:DVU_2444(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067081|imex:IM-22740-115 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|refseq:YP_009745.1|refseq:WP_010937828.1|ensemblbacteria:AAS95004(transcript)|ensemblbacteria:DVU_0522(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|entrezgene/locuslink:2794804(identity) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011656.1|refseq:WP_010939715.1|ensemblbacteria:AAS96916(transcript)|ensemblbacteria:DVU_2444(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187|entrezgene/locuslink:2796621(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:c5C5ClnCJ+W3GJvhTC/v7zqusRE882 rogid:uLsLwVWIWtrawkoz/HUPrhjN3kc882 intact-crc:8F0B56F3BFAD6588|rigid:Gs1TmksOJLYXouypBC3lNa1601c false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z3 uniprotkb:Q72CF4 intact:EBI-10066285|ensemblbacteria:AAS96931 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067035|imex:IM-22740-113 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.93" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:E0DC199D697D04D8|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z3 uniprotkb:Q72G56 intact:EBI-10066285|ensemblbacteria:AAS96931 intact:EBI-10066976|ensemblbacteria:AAS94488 psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:q72g56_desvh(display_long)|uniprotkb:DVU_0004(locus name)|uniprotkb:gyrA(gene name)|psi-mi:gyrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067035|imex:IM-22740-113 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) interpro:IPR002205(DNA topoisomerase, type IIA, subunit A or C-terminal)|interpro:IPR005743(DNA gyrase, subunit A)|interpro:IPR006691(DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel)|interpro:IPR013757(DNA topoisomerase, type IIA, subunit A, alpha-helical)|interpro:IPR013758(DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta)|interpro:IPR013760(DNA topoisomerase, type IIA, central)|refseq:YP_009229.1|refseq:WP_010937315.1|ensemblbacteria:AAS94488(transcript)|ensemblbacteria:DVU_0004(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003918"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005694"(chromosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006265"(DNA topological change)|interpro:IPR035516|entrezgene/locuslink:2794973(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 rogid:y0l6ztLMSiOKp1NvD9LqUdIEm3g882 intact-crc:E0DC199D697D04D8|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z3 uniprotkb:Q727C7 intact:EBI-10066285|ensemblbacteria:AAS96931 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067035|imex:IM-22740-113 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.45" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:E0DC199D697D04D8|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z3 uniprotkb:Q728Z2 intact:EBI-10066285|ensemblbacteria:AAS96931 intact:EBI-10066292|ensemblbacteria:AAS96932 psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067035|imex:IM-22740-113 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 intact-crc:E0DC199D697D04D8|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z3 uniprotkb:Q727C6 intact:EBI-10066285|ensemblbacteria:AAS96931 intact:EBI-10065699|ensemblbacteria:AAS97401 psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067035|imex:IM-22740-113 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 intact-crc:E0DC199D697D04D8|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727T2 uniprotkb:Q729B5 intact:EBI-10067120|ensemblbacteria:AAS97244 intact:EBI-10067126|ensemblbacteria:AAS96909 psi-mi:q727t2_desvh(display_long)|uniprotkb:DVU_2772(locus name) psi-mi:q729b5_desvh(display_long)|uniprotkb:DVU_2436(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067123|imex:IM-22740-117 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011984.1|refseq:WP_010940038.1|ensemblbacteria:AAS97244(transcript)|ensemblbacteria:DVU_2772(gene)|interpro:IPR002822(Protein of unknown function DUF111)|entrezgene/locuslink:2796322(identity) interpro:IPR003607(Metal-dependent phosphohydrolase, HD region)|interpro:IPR006674(Metal-dependent phosphohydrolase, HD region, subdomain)|refseq:YP_011649.1|refseq:WP_010939708.1|ensemblbacteria:AAS96909(transcript)|ensemblbacteria:DVU_2436(gene)|go:"GO:0002953"(5'-deoxynucleotidase activity)|interpro:IPR039356|entrezgene/locuslink:2795427(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.80" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:syddSF7wesv+xpgG6ITGt4X0BRI882 rogid:L083yJ4yczRDR8RfKzb4lJdcmPU882 intact-crc:CF3E8A7529866B5C|rigid:AQdzq5qgOXSBDs6deGFmghWQ2ow false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729C4 uniprotkb:Q72EB4 intact:EBI-10067155|ensemblbacteria:AAS96900 intact:EBI-10067158|ensemblbacteria:AAS95145 psi-mi:q729c4_desvh(display_long)|uniprotkb:DVU_2427(locus name) psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067152|imex:IM-22740-119 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011640.1|ensemblbacteria:AAS96900(transcript)|ensemblbacteria:DVU_2427(gene)|entrezgene/locuslink:2794368(identity) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:AAuZ05FpdYBy8r9F3WpZt/Q0NvE882 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 intact-crc:4318D1F76B2C3265|rigid:TbMPE2Oaanp2dSVVbPUstkcYnbs false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F2 uniprotkb:Q729F1 intact:EBI-10067174|ensemblbacteria:AAS96872 intact:EBI-10067171|ensemblbacteria:AAS96873 psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067214|imex:IM-22740-122 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261|entrezgene/locuslink:2794484(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794485(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.52" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 intact-crc:D1FFA82B927F3B2E|rigid:yhr7zXjhwoAwpE2X1ggUgfYVe1Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F2 uniprotkb:Q729F3 intact:EBI-10067174|ensemblbacteria:AAS96872 intact:EBI-10067211|ensemblbacteria:AAS96871 psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:q729f3_desvh(display_long)|uniprotkb:DVU_2398(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067214|imex:IM-22740-122 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261|entrezgene/locuslink:2794484(identity) interpro:IPR003251(Rubrerythrin)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_011611.1|refseq:WP_010939670.1|ensemblbacteria:AAS96871(transcript)|ensemblbacteria:DVU_2398(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2794483(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.79" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 rogid:5c3Z5OiIk/A6fVPUkfms43vqlOA882 intact-crc:D1FFA82B927F3B2E|rigid:yhr7zXjhwoAwpE2X1ggUgfYVe1Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F2 uniprotkb:Q729F0 intact:EBI-10067174|ensemblbacteria:AAS96872 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067214|imex:IM-22740-122 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261|entrezgene/locuslink:2794484(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.36" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:D1FFA82B927F3B2E|rigid:yhr7zXjhwoAwpE2X1ggUgfYVe1Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F1 uniprotkb:Q729F2 intact:EBI-10067171|ensemblbacteria:AAS96873 intact:EBI-10067174|ensemblbacteria:AAS96872 psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067177|imex:IM-22740-120 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794485(identity) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261|entrezgene/locuslink:2794484(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.52" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 intact-crc:3C16960153CD9254|rigid:wYbxkI9bJGfhPVOH7mCXoAASPNo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F1 uniprotkb:Q729F0 intact:EBI-10067171|ensemblbacteria:AAS96873 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067177|imex:IM-22740-120 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794485(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.95" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:3C16960153CD9254|rigid:wYbxkI9bJGfhPVOH7mCXoAASPNo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F1 uniprotkb:Q729E9 intact:EBI-10067171|ensemblbacteria:AAS96873 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067177|imex:IM-22740-120 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794485(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2794487(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.29" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:3C16960153CD9254|rigid:wYbxkI9bJGfhPVOH7mCXoAASPNo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729J0 uniprotkb:Q72B50 intact:EBI-10067280|ensemblbacteria:AAS96833 intact:EBI-10067283|ensemblbacteria:AAS96265 psi-mi:q729j0_desvh(display_long)|uniprotkb:DVU_2360(locus name) psi-mi:q72b50_desvh(display_long)|uniprotkb:Sigma-70(gene name synonym)|uniprotkb:DVU_1788(locus name)|uniprotkb:rpoD(gene name)|psi-mi:rpoD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067277|imex:IM-22740-125 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR017927|interpro:IPR017938|refseq:YP_011573.1|refseq:WP_010939633.1|ensemblbacteria:AAS96833(transcript)|ensemblbacteria:DVU_2360(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR039261|entrezgene/locuslink:2796519(identity) interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007127(RNA polymerase sigma factor 70, region 1.1)|interpro:IPR007624(RNA polymerase sigma-70 region 3)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR009042(RNA polymerase sigma-70 region 1.2)|interpro:IPR012760(RNA polymerase sigma factor RpoD, C-terminal)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|interpro:IPR028630|refseq:YP_011006.1|refseq:WP_010939076.1|ensemblbacteria:AAS96265(transcript)|ensemblbacteria:DVU_1788(gene)|go:"GO:0001123"|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016987"(sigma factor activity)|interpro:IPR036388|interpro:IPR042189|entrezgene/locuslink:2793314(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.89" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:fSjhn8QoYe43b0N0ffMxfOVXWD4882 rogid:uXlgHdylMF0gkzY6Dq/5S1/2Dzw882 intact-crc:03D4EC0765B6FA50|rigid:XdxlWuyyB5renf3cbMIlbcmp4Yk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729I6 uniprotkb:Q726S3 intact:EBI-10065723|ensemblbacteria:AAS96837 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067256|imex:IM-22740-124 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:555DBBDE0899CC14|rigid:Q7npeUox5/Cc41wBD+yrihv5ANc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729I6 uniprotkb:Q729E9 intact:EBI-10065723|ensemblbacteria:AAS96837 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067256|imex:IM-22740-124 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2794487(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:555DBBDE0899CC14|rigid:Q7npeUox5/Cc41wBD+yrihv5ANc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729I6 uniprotkb:Q72A93 intact:EBI-10065723|ensemblbacteria:AAS96837 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067256|imex:IM-22740-124 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.38" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:555DBBDE0899CC14|rigid:Q7npeUox5/Cc41wBD+yrihv5ANc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F3 uniprotkb:Q729F1 intact:EBI-10067211|ensemblbacteria:AAS96871 intact:EBI-10067171|ensemblbacteria:AAS96873 psi-mi:q729f3_desvh(display_long)|uniprotkb:DVU_2398(locus name) psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067235|imex:IM-22740-123 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003251(Rubrerythrin)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_011611.1|refseq:WP_010939670.1|ensemblbacteria:AAS96871(transcript)|ensemblbacteria:DVU_2398(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2794483(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794485(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.46" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5c3Z5OiIk/A6fVPUkfms43vqlOA882 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 intact-crc:94BA70CD51E32B92|rigid:yhr7zXjhwoAwpE2X1ggUgfYVe1Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F3 uniprotkb:Q729F0 intact:EBI-10067211|ensemblbacteria:AAS96871 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q729f3_desvh(display_long)|uniprotkb:DVU_2398(locus name) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067235|imex:IM-22740-123 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003251(Rubrerythrin)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_011611.1|refseq:WP_010939670.1|ensemblbacteria:AAS96871(transcript)|ensemblbacteria:DVU_2398(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2794483(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.28" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5c3Z5OiIk/A6fVPUkfms43vqlOA882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:94BA70CD51E32B92|rigid:yhr7zXjhwoAwpE2X1ggUgfYVe1Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F3 uniprotkb:Q729F2 intact:EBI-10067211|ensemblbacteria:AAS96871 intact:EBI-10067174|ensemblbacteria:AAS96872 psi-mi:q729f3_desvh(display_long)|uniprotkb:DVU_2398(locus name) psi-mi:q729f2_desvh(display_long)|uniprotkb:DVU_2399(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067235|imex:IM-22740-123 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003251(Rubrerythrin)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_011611.1|refseq:WP_010939670.1|ensemblbacteria:AAS96871(transcript)|ensemblbacteria:DVU_2398(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2794483(identity) interpro:IPR001433("Oxidoreductase FAD/NAD(P)-binding")|interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|ensemblbacteria:AAS96872(transcript)|ensemblbacteria:DVU_2399(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261|entrezgene/locuslink:2794484(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.79" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5c3Z5OiIk/A6fVPUkfms43vqlOA882 rogid:Aqu+j09u3vtrlcDR+Gu6sdVlxqY882 intact-crc:94BA70CD51E32B92|rigid:yhr7zXjhwoAwpE2X1ggUgfYVe1Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729N8 uniprotkb:Q729K0 intact:EBI-10067301|ensemblbacteria:AAS96785 intact:EBI-10067297|ensemblbacteria:AAS96823 psi-mi:q729n8_desvh(display_long)|uniprotkb:DVU_2312(locus name) psi-mi:trmfo_desvh(display_long)|uniprotkb:"Folate-dependent tRNA (uracil-5-)-methyltransferase"(gene name synonym)|uniprotkb:"Folate-dependent tRNA(M-5-U54)-methyltransferase"(gene name synonym)|uniprotkb:DVU_2350(locus name)|uniprotkb:trmFO(gene name)|psi-mi:trmFO(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067304|imex:IM-22740-126 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010261(Tir chaperone)|refseq:YP_011525.1|refseq:WP_010939586.1|ensemblbacteria:AAS96785(transcript)|ensemblbacteria:DVU_2312(gene)|go:"GO:0030254"(protein secretion by the type III secretion system)|entrezgene/locuslink:2795272(identity) interpro:IPR040131|interpro:IPR002218(Glucose-inhibited division protein A)|interpro:IPR004417(Gid protein)|refseq:YP_011563.1|ensemblbacteria:AAS96823(transcript)|ensemblbacteria:DVU_2350(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0030698"("5,10-methylenetetrahydrofolate-dependent tRNA (m5U54) methyltransferase activity")|go:"GO:0047151"("methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) activity")|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|entrezgene/locuslink:2795524(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.72" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:BzdtiqMsQ93GflA+ajf4riJJ4Pw882 rogid:sGGOnGMTrmj+zBxQDv198G4IvIk882 intact-crc:7821B955C45B0276 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729N8 intact:EBI-10053354 intact:EBI-10067301|ensemblbacteria:AAS96785 - psi-mi:q729n8_desvh(display_long)|uniprotkb:DVU_2312(locus name) psi-mi:dorf40861(display_short)|psi-mi:EBI-10053354(display_long) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067304|imex:IM-22740-126 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010261(Tir chaperone)|refseq:YP_011525.1|refseq:WP_010939586.1|ensemblbacteria:AAS96785(transcript)|ensemblbacteria:DVU_2312(gene)|go:"GO:0030254"(protein secretion by the type III secretion system)|entrezgene/locuslink:2795272(identity) - psi-mi:"MI:0469"(intact) comment: comment:"Identified peptides: AAVFNLMGTAPGEGLLSAGGLPR, ARLEEGYSEAITFSEMR, DMTPDAK, EHAFADR, ELVEDVK, FSHIDIR, FWMQTLDGEK, FWMQTLDGEKITDSATFAGTAQR, GTLSVVGDTPQR, HAGDAASYAR, HTFSAR, IEAGTAHLDLFAR, ITDSATFAGTAQR, KTYPGDDEGTAWR, LDGSFEHDLK, LDGSFEHDLKQSGQGTLTVGTTR, LEEGYSEAITFSEMR, LEVMQQAK, LGLEFFSTR, LITMRPQCGEIIANAMQTHFFR, LLAHGFDGEIR, LLQANPDADIGFLSYR, LLQANPDADIGFLSYRD, LQWLLTER, MQMVDTLNLR, NSPILGK, PQCGEIIANAMQTHFFR, QALPNLHDGAEACGLTPAR, QQAAYGFEVAK, QQAAYGFEVAKPIR, QSGQGTLTVGTTR, STSTLSPGEIDAMR, TFLAER, TGIMYQPVMR, TLLEKPTLAER, TLRDMTPDAK, TYPGDDEGTAWR, VSLHHDGLSVTPDNVFAR"|comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:BzdtiqMsQ93GflA+ajf4riJJ4Pw882 - intact-crc:7821B955C45B0276 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729U8 uniprotkb:Q729U7 intact:EBI-10067367|ensemblbacteria:AAS96723 intact:EBI-10065900|ensemblbacteria:AAS96724 psi-mi:q729u8_desvh(display_long)|uniprotkb:DVU_2250(locus name) psi-mi:q729u7_desvh(display_long)|uniprotkb:DVU_2251(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067364|imex:IM-22740-130 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR020845|interpro:IPR025110|refseq:YP_011463.1|refseq:WP_010939525.1|ensemblbacteria:AAS96723(transcript)|ensemblbacteria:DVU_2250(gene)|entrezgene/locuslink:2795402(identity) interpro:IPR001387(Helix-turn-helix type 3)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|interpro:IPR011051(Cupin, RmlC-type)|interpro:IPR013096(Cupin 2, conserved barrel)|interpro:IPR014710(RmlC-like jelly roll fold)|refseq:YP_011464.1|refseq:WP_010939526.1|ensemblbacteria:AAS96724(transcript)|ensemblbacteria:DVU_2251(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2795403(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:MRzyTgNuRcZ46t/X+BFkEa+oOkM882 rogid:9GqiNXYRfuPwD7YOjwThmdE6ATI882 intact-crc:2CF8ED3B01302FBF|rigid:Wp7Duyioq64msl3H9Fj+zSZ5P+Y false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q8 uniprotkb:Q729Q9 intact:EBI-10067332|ensemblbacteria:AAS96764 intact:EBI-10067338|ensemblbacteria:AAS96763 psi-mi:q729q8_desvh(display_long)|uniprotkb:DVU_2291(locus name) psi-mi:q729q9_desvh(display_long)|uniprotkb:DVU_2290(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067335|imex:IM-22740-128 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|refseq:WP_010939566.1|interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR029014|refseq:YP_011504.1|ensemblbacteria:AAS96764(transcript)|ensemblbacteria:DVU_2291(gene)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2795445(identity) interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|ensemblbacteria:AAS96763(transcript)|ensemblbacteria:DVU_2290(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|interpro:IPR037232|entrezgene/locuslink:2795444(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Yt5P32YlY9IMEma6vpaTTK4+uUc882 rogid:vId31Wmn6in1ErXb+Zeb8SIpIjQ882 intact-crc:3B5EBC52D7127883|rigid:naRIe79OtHSCo/4snhuZD/aAWms false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729V7 uniprotkb:Q726Y7 intact:EBI-10064945|ensemblbacteria:AAS96713 intact:EBI-10067399|ensemblbacteria:AAS97440 psi-mi:q729v7_desvh(display_long)|uniprotkb:DVU_2240(locus name) psi-mi:q726y7_desvh(display_long)|uniprotkb:Acetate--CoA ligase(gene name synonym)|uniprotkb:Acyl-activating enzyme(gene name synonym)|uniprotkb:DVU_2969(locus name)|uniprotkb:acsA(gene name)|psi-mi:acsA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067396|imex:IM-22740-132 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002821(Hydantoinase/oxoprolinase)|interpro:IPR008040(Hydantoinaseoxoprolinase, N-terminal)|refseq:YP_011453.1|refseq:WP_010939515.1|ensemblbacteria:AAS96713(transcript)|ensemblbacteria:DVU_2240(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR043129|entrezgene/locuslink:2795392(identity) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011904(Acetate--CoA ligase)|interpro:IPR020845|interpro:IPR025110|refseq:YP_012180.1|interpro:IPR032387|refseq:WP_010940228.1|ensemblbacteria:AAS97440(transcript)|ensemblbacteria:DVU_2969(gene)|go:"GO:0003987"(acetate-CoA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016208"(AMP binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0019427"(acetyl-CoA biosynthetic process from acetate)|entrezgene/locuslink:2796283(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lY4GJvddii/woep18tcb6guNssA882 rogid:CpCbQcDPOD2enofgGhmyTGYYQTE882 intact-crc:C9424BBE505C1004|rigid:M/KHiVNRaBvqin4wfhFa2QcfZxQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729V7 uniprotkb:Q72A58 intact:EBI-10064945|ensemblbacteria:AAS96713 intact:EBI-10067393|ensemblbacteria:AAS96612 psi-mi:q729v7_desvh(display_long)|uniprotkb:DVU_2240(locus name) psi-mi:q72a58_desvh(display_long)|uniprotkb:DVU_2139(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067396|imex:IM-22740-132 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002821(Hydantoinase/oxoprolinase)|interpro:IPR008040(Hydantoinaseoxoprolinase, N-terminal)|refseq:YP_011453.1|refseq:WP_010939515.1|ensemblbacteria:AAS96713(transcript)|ensemblbacteria:DVU_2240(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR043129|entrezgene/locuslink:2795392(identity) interpro:IPR000286(Histone deacetylase superfamily)|interpro:IPR023801|refseq:YP_011352.1|refseq:WP_010939416.1|ensemblbacteria:AAS96612(transcript)|ensemblbacteria:DVU_2139(gene)|interpro:IPR023696|interpro:IPR037138|entrezgene/locuslink:2794218(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lY4GJvddii/woep18tcb6guNssA882 rogid:wIrpH05ijl4wwiq8kzb2PBhwt44882 intact-crc:C9424BBE505C1004|rigid:M/KHiVNRaBvqin4wfhFa2QcfZxQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X1 uniprotkb:Q72F92 intact:EBI-10067436|ensemblbacteria:AAS96699 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:q729x1_desvh(display_long)|uniprotkb:DVU_2226(locus name) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067433|imex:IM-22740-134 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_011439.1|refseq:WP_010939501.1|ensemblbacteria:AAS96699(transcript)|ensemblbacteria:DVU_2226(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016874"(ligase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795553(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.95" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:0kkK0a8V2P0I5n8rknJF0yJwqcQ882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:D59BF00E5E9CE252|rigid:fL/cfANo0smiiucFKAaSpwcMvFo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X1 uniprotkb:Q729X3 intact:EBI-10067436|ensemblbacteria:AAS96699 intact:EBI-10067439|ensemblbacteria:AAS96697 psi-mi:q729x1_desvh(display_long)|uniprotkb:DVU_2226(locus name) psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067433|imex:IM-22740-134 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_011439.1|refseq:WP_010939501.1|ensemblbacteria:AAS96699(transcript)|ensemblbacteria:DVU_2226(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016874"(ligase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795553(identity) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:0kkK0a8V2P0I5n8rknJF0yJwqcQ882 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 intact-crc:D59BF00E5E9CE252|rigid:fL/cfANo0smiiucFKAaSpwcMvFo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X1 uniprotkb:Q729X2 intact:EBI-10067436|ensemblbacteria:AAS96699 intact:EBI-10067430|ensemblbacteria:AAS96698 psi-mi:q729x1_desvh(display_long)|uniprotkb:DVU_2226(locus name) psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067433|imex:IM-22740-134 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_011439.1|refseq:WP_010939501.1|ensemblbacteria:AAS96699(transcript)|ensemblbacteria:DVU_2226(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016874"(ligase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795553(identity) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:0kkK0a8V2P0I5n8rknJF0yJwqcQ882 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 intact-crc:D59BF00E5E9CE252|rigid:fL/cfANo0smiiucFKAaSpwcMvFo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X2 uniprotkb:Q729X1 intact:EBI-10067430|ensemblbacteria:AAS96698 intact:EBI-10067436|ensemblbacteria:AAS96699 psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:q729x1_desvh(display_long)|uniprotkb:DVU_2226(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067473|imex:IM-22740-136 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_011439.1|refseq:WP_010939501.1|ensemblbacteria:AAS96699(transcript)|ensemblbacteria:DVU_2226(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016874"(ligase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795553(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 rogid:0kkK0a8V2P0I5n8rknJF0yJwqcQ882 intact-crc:F9DDC67F0E7660DF|rigid:fL/cfANo0smiiucFKAaSpwcMvFo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X2 uniprotkb:Q72F92 intact:EBI-10067430|ensemblbacteria:AAS96698 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067473|imex:IM-22740-136 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:F9DDC67F0E7660DF|rigid:fL/cfANo0smiiucFKAaSpwcMvFo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X2 uniprotkb:Q729X3 intact:EBI-10067430|ensemblbacteria:AAS96698 intact:EBI-10067439|ensemblbacteria:AAS96697 psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067473|imex:IM-22740-136 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 intact-crc:F9DDC67F0E7660DF|rigid:fL/cfANo0smiiucFKAaSpwcMvFo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X3 uniprotkb:Q72F92 intact:EBI-10067439|ensemblbacteria:AAS96697 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067494|imex:IM-22740-137 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.97" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:534C847A8102DFFD|rigid:bjfzFHSt7baiDY5hsSDxyGNIpJ4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X3 uniprotkb:Q72AL0 intact:EBI-10067439|ensemblbacteria:AAS96697 intact:EBI-10067497|ensemblbacteria:AAS96458 psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:q72al0_desvh(display_long)|uniprotkb:DVU_1982(locus name)|uniprotkb:rhlE(gene name)|psi-mi:rhlE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067494|imex:IM-22740-137 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014014(RNA helicase, DEAD-box type, Q motif)|interpro:IPR027417|refseq:YP_011199.1|refseq:WP_010939268.1|ensemblbacteria:AAS96458(transcript)|ensemblbacteria:DVU_1982(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0016787"(hydrolase activity)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793788(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.38" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 rogid:zKmJjhrid6qDgJl5ptCURc+2Jfc882 intact-crc:534C847A8102DFFD|rigid:bjfzFHSt7baiDY5hsSDxyGNIpJ4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X3 uniprotkb:Q729X2 intact:EBI-10067439|ensemblbacteria:AAS96697 intact:EBI-10067430|ensemblbacteria:AAS96698 psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067494|imex:IM-22740-137 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 intact-crc:534C847A8102DFFD|rigid:bjfzFHSt7baiDY5hsSDxyGNIpJ4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X3 uniprotkb:Q729X1 intact:EBI-10067439|ensemblbacteria:AAS96697 intact:EBI-10067436|ensemblbacteria:AAS96699 psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:q729x1_desvh(display_long)|uniprotkb:DVU_2226(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067494|imex:IM-22740-137 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_011439.1|refseq:WP_010939501.1|ensemblbacteria:AAS96699(transcript)|ensemblbacteria:DVU_2226(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016874"(ligase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795553(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 rogid:0kkK0a8V2P0I5n8rknJF0yJwqcQ882 intact-crc:534C847A8102DFFD|rigid:bjfzFHSt7baiDY5hsSDxyGNIpJ4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729V7 uniprotkb:Q72A58 intact:EBI-10064945|ensemblbacteria:AAS96713 intact:EBI-10067393|ensemblbacteria:AAS96612 psi-mi:q729v7_desvh(display_long)|uniprotkb:DVU_2240(locus name) psi-mi:q72a58_desvh(display_long)|uniprotkb:DVU_2139(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067593|imex:IM-22740-142 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002821(Hydantoinase/oxoprolinase)|interpro:IPR008040(Hydantoinaseoxoprolinase, N-terminal)|refseq:YP_011453.1|refseq:WP_010939515.1|ensemblbacteria:AAS96713(transcript)|ensemblbacteria:DVU_2240(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR043129|entrezgene/locuslink:2795392(identity) interpro:IPR000286(Histone deacetylase superfamily)|interpro:IPR023801|refseq:YP_011352.1|refseq:WP_010939416.1|ensemblbacteria:AAS96612(transcript)|ensemblbacteria:DVU_2139(gene)|interpro:IPR023696|interpro:IPR037138|entrezgene/locuslink:2794218(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lY4GJvddii/woep18tcb6guNssA882 rogid:wIrpH05ijl4wwiq8kzb2PBhwt44882 intact-crc:B48F8826B0F1D7F9|rigid:+vcnzsaIeucH+yZhK8DzXBVGtbM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Z3 intact:EBI-10053352 intact:EBI-10067544|ensemblbacteria:AAS96677 - psi-mi:tnaa_desvh(display_long)|uniprotkb:L-tryptophan indole-lyase(gene name synonym)|uniprotkb:DVU_2204(locus name)|uniprotkb:tnaA(gene name)|psi-mi:tnaA(display_short) psi-mi:dorf38927(display_short)|psi-mi:EBI-10053352(display_long) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067548|imex:IM-22740-139 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001597(Aromatic amino acid beta-eliminating lyase/threonine aldolase)|interpro:IPR011166(Tryptophanase)|interpro:IPR013440(Tryptophanase, proteobacteria)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011417.1|refseq:WP_010939479.1|ensemblbacteria:AAS96677(transcript)|ensemblbacteria:DVU_2204(gene)|go:"GO:0009034"(tryptophanase activity)|entrezgene/locuslink:2793667(identity) - psi-mi:"MI:0469"(intact) comment: comment:"Identified peptides: LPEPFR, RLPEPFR"|comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:FMcSZdQNPjOrDaeFe31vqajqeMY882 - intact-crc:5E025B77B1C38754 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C77 uniprotkb:Q72A53 intact:EBI-10067567|ensemblbacteria:AAS95885 intact:EBI-10067563|ensemblbacteria:AAS96617 psi-mi:q72c77_desvh(display_long)|uniprotkb:DVU_1407(locus name) psi-mi:q72a53_desvh(display_long)|uniprotkb:DVU_2144(locus name)|uniprotkb:gap-2(gene name)|psi-mi:gap-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067560|imex:IM-22740-140 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_010626.1|refseq:WP_010938700.1|ensemblbacteria:AAS95885(transcript)|ensemblbacteria:DVU_1407(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034457|entrezgene/locuslink:2794659(identity) refseq:WP_010939421.1|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:YP_011357.1|ensemblbacteria:AAS96617(transcript)|ensemblbacteria:DVU_2144(gene)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0016620"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR036291|entrezgene/locuslink:2794223(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:7iprsdbeWi0a7RGozDHsCB5CO9Q882 rogid:mnhUR9jhbpL2tSACKeOzSSgcQFs882 intact-crc:A0C0C07B5D049960|rigid:j+fcN+SlqKaD2O5JV5/AkIqvkQ0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FH2 uniprotkb:Q72A59 intact:EBI-10067619|ensemblbacteria:AAS94725 intact:EBI-10067622|ensemblbacteria:AAS96611 psi-mi:q72fh2_desvh(display_long)|uniprotkb:DVU_0241(locus name) psi-mi:q72a59_desvh(display_long)|uniprotkb:DVU_2138(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067625|imex:IM-22740-144 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033913|interpro:IPR003731(Dinitrogenase iron-molybdenum cofactor biosynthesis)|refseq:YP_009466.1|refseq:WP_010937551.1|ensemblbacteria:AAS94725(transcript)|ensemblbacteria:DVU_0241(gene)|go:"GO:0009399"(nitrogen fixation)|interpro:IPR036105|entrezgene/locuslink:2796722(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR009501(Protein of unknown function DUF1121)|refseq:YP_011351.1|refseq:WP_010939415.1|ensemblbacteria:AAS96611(transcript)|ensemblbacteria:DVU_2138(gene)|entrezgene/locuslink:2794217(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.87" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Byylyxpyu78CE23sObs0vfKDRLc882 rogid:En8ImKUJhrEwBuZ45CZ4zc5V7vg882 intact-crc:CD0928555FA58EA6|rigid:ueqq6JisKdnS7e+HpClOJDnv7ho false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AA4 uniprotkb:Q72AA3 intact:EBI-10067658|ensemblbacteria:AAS96566 intact:EBI-10067665|ensemblbacteria:AAS96567 psi-mi:q72aa4_desvh(display_long)|uniprotkb:DVU_2093(locus name)|uniprotkb:thiH(gene name)|psi-mi:thiH(display_short) psi-mi:q72aa3_desvh(display_long)|uniprotkb:DVU_2094(locus name)|uniprotkb:thiG(gene name)|psi-mi:thiG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067662|imex:IM-22740-146 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010722(Biotin and thiamin synthesis associated)|interpro:IPR012726(Thiazole biosynthesis ThiH)|refseq:YP_011306.1|refseq:WP_010939370.1|ensemblbacteria:AAS96566(transcript)|ensemblbacteria:DVU_2093(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034428|entrezgene/locuslink:2795469(identity) interpro:IPR008867(Thiazole biosynthesis)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:WP_010939371.1|refseq:YP_011307.1|ensemblbacteria:AAS96567(transcript)|ensemblbacteria:DVU_2094(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:1990107"(thiazole synthase activity)|interpro:IPR033983|entrezgene/locuslink:2795470(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:wfS251/hAHdZ2zy6jozSvp8FKgc882 rogid:nwI9TbvedKsctIY5UofhF0JPPl4882 intact-crc:68AF8AEE6C4844F2|rigid:bmy/5OEs5uFtbjkpZH4RI82k3Qg false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72A66 uniprotkb:Q72DL3 intact:EBI-10067638|ensemblbacteria:AAS96604 intact:EBI-10067644|ensemblbacteria:AAS95396 psi-mi:q72a66_desvh(display_long)|uniprotkb:DVU_2131(locus name) psi-mi:q72dl3_desvh(display_long)|uniprotkb:DVU_0916(locus name)|uniprotkb:rex(gene name)|psi-mi:rex(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067641|imex:IM-22740-145 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939408.1|interpro:IPR007710(Nucleoside 2-deoxyribosyltransferase)|refseq:YP_011344.1|ensemblbacteria:AAS96604(transcript)|ensemblbacteria:DVU_2131(gene)|entrezgene/locuslink:2795512(identity) interpro:IPR003781(CoA-binding)|interpro:IPR009718(Rex DNA-binding, C-terminal)|interpro:IPR022876|refseq:YP_010137.1|refseq:WP_010938215.1|ensemblbacteria:AAS95396(transcript)|ensemblbacteria:DVU_0916(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0051775"(response to redox state)|interpro:IPR036291|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2794669(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:vsGwKt/4DnjCKcRaow40pPjtyfM882 rogid:pdwy0prs3++ZE8T3R9wW+eeaSS0882 intact-crc:3AF543AED80BC1ED|rigid:Frv5N7sYqXUuM1za1VYz9u67Vdk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AA6 uniprotkb:Q72D36 intact:EBI-10067695|ensemblbacteria:AAS96564 intact:EBI-10067699|ensemblbacteria:AAS95574 psi-mi:q72aa6_desvh(display_long)|uniprotkb:Thiamine-phosphate pyrophosphorylase(gene name synonym)|uniprotkb:thiE(gene name synonym)|uniprotkb:DVU_2091(locus name)|uniprotkb:thiE-1(gene name)|psi-mi:thiE-1(display_short) psi-mi:arly_desvh(display_long)|uniprotkb:Arginosuccinase(gene name synonym)|uniprotkb:DVU_1094(locus name)|uniprotkb:argH(gene name)|psi-mi:argH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067692|imex:IM-22740-148 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR022998|refseq:YP_011304.1|refseq:WP_010939368.1|ensemblbacteria:AAS96564(transcript)|ensemblbacteria:DVU_2091(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004789"(thiamine-phosphate diphosphorylase activity)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|interpro:IPR034291|interpro:IPR036206|entrezgene/locuslink:2793545(identity) interpro:IPR000362(Fumarate lyase)|interpro:IPR008948(L-Aspartase-like)|interpro:IPR009049(Argininosuccinate lyase)|interpro:IPR020557|interpro:IPR022761|interpro:IPR024083|interpro:IPR029419|refseq:YP_010315.1|refseq:WP_010938393.1|ensemblbacteria:AAS95574(transcript)|ensemblbacteria:DVU_1094(gene)|go:"GO:0004056"(argininosuccinate lyase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0042450"(arginine biosynthetic process via ornithine)|entrezgene/locuslink:2794073(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:BasX9DyWq68fhggEjrtHYntLy6w882 rogid:0xiCHW8HKPNzkOA0ytfrjBwB2n0882 intact-crc:356DF714284F7B07|rigid:zIZak4yaHL0ES8mTRnaE45NjUT0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AD3 uniprotkb:Q726S3 intact:EBI-10065720|ensemblbacteria:AAS96537 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067745|imex:IM-22740-151 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.37" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:591C1AD942B9741F|rigid:PudkrwIheHgF4e3XS8jdYQ0YDx4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AD3 uniprotkb:Q726S4 intact:EBI-10065720|ensemblbacteria:AAS96537 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q72ad3_desvh(display_long)|uniprotkb:DVU_2064(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067745|imex:IM-22740-151 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004136(2-nitropropane dioxygenase, NPD)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011277.1|refseq:WP_010939342.1|ensemblbacteria:AAS96537(transcript)|ensemblbacteria:DVU_2064(gene)|go:"GO:0018580"(nitronate monooxygenase activity)|go:"GO:0051213"(dioxygenase activity)|entrezgene/locuslink:2796488(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:8LfyINb4smw5oLajj8vv2ig38/g882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:591C1AD942B9741F|rigid:PudkrwIheHgF4e3XS8jdYQ0YDx4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AC0 uniprotkb:Q72D92 intact:EBI-10067732|ensemblbacteria:AAS96550 intact:EBI-10067726|ensemblbacteria:AAS95517 psi-mi:q72ac0_desvh(display_long)|uniprotkb:DVU_2077(locus name) psi-mi:q72d92_desvh(display_long)|uniprotkb:DVU_1037(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067729|imex:IM-22740-150 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004155(PBS lyase HEAT-like repeat)|interpro:IPR011989(Armadillo-like helical)|interpro:IPR016024(Armadillo-type fold)|refseq:YP_011290.1|refseq:WP_010939355.1|ensemblbacteria:AAS96550(transcript)|ensemblbacteria:DVU_2077(gene)|entrezgene/locuslink:2793454(identity) interpro:IPR004099(Pyridine nucleotide-disulphide oxidoreductase, dimerisation)|interpro:IPR012999(Pyridine nucleotide-disulphide oxidoreductase, class I, active site)|interpro:IPR016156(FAD/NAD-linked reductase, dimerisation)|interpro:IPR023753|refseq:WP_010938336.1|refseq:YP_010258.1|ensemblbacteria:AAS95517(transcript)|ensemblbacteria:DVU_1037(gene)|go:"GO:0016668"("oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor")|go:"GO:0045454"(cell redox homeostasis)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR001100(Pyridine nucleotide-disulphide oxidoreductase, class I)|interpro:IPR036188|entrezgene/locuslink:2796250(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:S5kLwJ5/LbqOjSTNJMCpOmSHOd0882 rogid:oPrRCy/CrJaE0gJUxb/jiMX0ywE882 intact-crc:A65A5A19788F18E1|rigid:2zqPJXDAENU+qQfNi4Z2yHUAzQo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AQ1 uniprotkb:Q72AE2 intact:EBI-10067769|ensemblbacteria:AAS96417 intact:EBI-10067762|ensemblbacteria:AAS96528 psi-mi:q72aq1_desvh(display_long)|uniprotkb:DVU_1941(locus name) psi-mi:q72ae2_desvh(display_long)|uniprotkb:metG(gene name)|psi-mi:metG(display_short)|uniprotkb:Methionyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_2055(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067766|imex:IM-22740-152 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006357(HAD-superfamily hydrolase, subfamily IIA)|interpro:IPR023214|refseq:YP_011158.1|refseq:WP_010939227.1|ensemblbacteria:AAS96417(transcript)|ensemblbacteria:DVU_1941(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036412|entrezgene/locuslink:2793513(identity) interpro:IPR041872|interpro:IPR033911|interpro:IPR002547(tRNA-binding region)|interpro:IPR004495(Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR014758(Methionyl-tRNA synthetase, class Ia, N-terminal)|interpro:IPR015413("Aminoacyl-tRNA synthetase, class I (M)")|interpro:IPR023457|refseq:WP_010939333.1|refseq:YP_011268.1|interpro:IPR032678|ensemblbacteria:AAS96528(transcript)|ensemblbacteria:DVU_2055(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0004825"(methionine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006431"(methionyl-tRNA aminoacylation)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2796479(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:1jHVEWHH42ytFEKtxEO8DaBalIY882 rogid:h1kUEOwSshrNiJpCu6I400O/Ay0882 intact-crc:B8D0749E47EE95A0|rigid:+Q414rVyxmz9XVBOR2M804NBY9E false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AG0 uniprotkb:Q72AF9 intact:EBI-10067802|ensemblbacteria:AAS96510 intact:EBI-10067808|ensemblbacteria:AAS96511 psi-mi:q72ag0_desvh(display_long)|uniprotkb:DVU_2035(locus name) psi-mi:q72af9_desvh(display_long)|uniprotkb:DVU_2036(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067805|imex:IM-22740-154 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007712(Plasmid stabilization system)|refseq:YP_011250.1|refseq:WP_010939315.1|ensemblbacteria:AAS96510(transcript)|ensemblbacteria:DVU_2035(gene)|interpro:IPR035093|entrezgene/locuslink:2794833(identity) interpro:IPR002145(CopG-like DNA-binding)|interpro:IPR010985(Ribbon-helix-helix)|refseq:YP_011251.1|refseq:WP_010939316.1|ensemblbacteria:AAS96511(transcript)|ensemblbacteria:DVU_2036(gene)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR013321(Arc-type ribbon-helix-helix)|entrezgene/locuslink:2794834(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:8Z2ajic69+P9qIlmQxDv09qcrk0882 rogid:vQrzGiRF2C6mNL+HkAkes5CjF5I882 intact-crc:59C66634F2B7F1F1|rigid:5pMTjAwJnYF0wwtuP8EPhon3NnM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AI0 uniprotkb:Q72B90 intact:EBI-10067821|ensemblbacteria:AAS96489 intact:EBI-10067827|ensemblbacteria:AAS96223 psi-mi:q72ai0_desvh(display_long)|uniprotkb:DVU_2014(locus name) psi-mi:q72b90_desvh(display_long)|uniprotkb:DVU_1746(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067824|imex:IM-22740-155 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR008254(Flavodoxin/nitric oxide synthase)|interpro:IPR016440(Rubredoxin-oxygen oxidoreductase)|interpro:IPR029039|refseq:YP_011230.1|refseq:WP_010939297.1|ensemblbacteria:AAS96489(transcript)|ensemblbacteria:DVU_2014(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036866|entrezgene/locuslink:2796736(identity) interpro:IPR001525(C-5 cytosine-specific DNA methylase)|interpro:IPR018117|interpro:IPR029063|refseq:YP_010964.1|refseq:WP_010939034.1|ensemblbacteria:AAS96223(transcript)|ensemblbacteria:DVU_1746(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|entrezgene/locuslink:2795849(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.66" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Uihzz7VA6Rbj78fFDq/njdaV68w882 rogid:5a6bQ7+vE7/Tqc8NwCBf2zrQk50882 intact-crc:99BA52B3A9D31941|rigid:aWKIxC31XBQIAJIkWgITeNgtoyY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DN5 uniprotkb:Q72AF3 intact:EBI-10067785|ensemblbacteria:AAS95374 intact:EBI-10067789|ensemblbacteria:AAS96517 psi-mi:aroc_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym)|uniprotkb:DVU_0894(locus name)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short) psi-mi:q72af3_desvh(display_long)|uniprotkb:DVU_2042(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067782|imex:IM-22740-153 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000453(Chorismate synthase)|interpro:IPR020541|refseq:YP_010115.1|refseq:WP_010938193.1|ensemblbacteria:AAS95374(transcript)|ensemblbacteria:DVU_0894(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR035904|entrezgene/locuslink:2794112(identity) interpro:IPR003812(Filamentation induced by cAMP protein Fic)|refseq:YP_011257.1|ensemblbacteria:AAS96517(transcript)|ensemblbacteria:DVU_2042(gene)|interpro:IPR036597|interpro:IPR040198|entrezgene/locuslink:2794538(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.26" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:iHGB7L1SbAIWU9CoIggdBpLYneU882 rogid:P5MVWuh1nCQqhA4JgfhYztDTh7g882 intact-crc:931CB9B33C7FFB62|rigid:WvTwq13YhzBnXCWbGMYbecvB/W0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AL0 uniprotkb:Q72F92 intact:EBI-10067497|ensemblbacteria:AAS96458 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:q72al0_desvh(display_long)|uniprotkb:DVU_1982(locus name)|uniprotkb:rhlE(gene name)|psi-mi:rhlE(display_short) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067853|imex:IM-22740-157 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014014(RNA helicase, DEAD-box type, Q motif)|interpro:IPR027417|refseq:YP_011199.1|refseq:WP_010939268.1|ensemblbacteria:AAS96458(transcript)|ensemblbacteria:DVU_1982(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0016787"(hydrolase activity)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793788(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zKmJjhrid6qDgJl5ptCURc+2Jfc882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:71E7C3D56B106AA9|rigid:GfQ9uKgPhmAk9oE8oU+wMMUUWcU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AL0 uniprotkb:Q729X3 intact:EBI-10067497|ensemblbacteria:AAS96458 intact:EBI-10067439|ensemblbacteria:AAS96697 psi-mi:q72al0_desvh(display_long)|uniprotkb:DVU_1982(locus name)|uniprotkb:rhlE(gene name)|psi-mi:rhlE(display_short) psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067853|imex:IM-22740-157 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014014(RNA helicase, DEAD-box type, Q motif)|interpro:IPR027417|refseq:YP_011199.1|refseq:WP_010939268.1|ensemblbacteria:AAS96458(transcript)|ensemblbacteria:DVU_1982(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0016787"(hydrolase activity)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793788(identity) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.38" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zKmJjhrid6qDgJl5ptCURc+2Jfc882 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 intact-crc:71E7C3D56B106AA9|rigid:GfQ9uKgPhmAk9oE8oU+wMMUUWcU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AL2 uniprotkb:Q72DA8 intact:EBI-10067873|ensemblbacteria:AAS96456 intact:EBI-10067870|ensemblbacteria:AAS95501 psi-mi:q72al2_desvh(display_long)|uniprotkb:DVU_1980(locus name) psi-mi:q72da8_desvh(display_long)|uniprotkb:DVU_1021(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067876|imex:IM-22740-158 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011197.1|refseq:WP_010939266.1|ensemblbacteria:AAS96456(transcript)|ensemblbacteria:DVU_1980(gene)|entrezgene/locuslink:2793786(identity) interpro:IPR000825(SUF system FeS cluster assembly, SufBD)|refseq:YP_010242.1|refseq:WP_010938320.1|ensemblbacteria:AAS95501(transcript)|ensemblbacteria:DVU_1021(gene)|go:"GO:0016226"(iron-sulfur cluster assembly)|interpro:IPR037284|entrezgene/locuslink:2793744(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.51" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:C3yBg70czjJJIBX5MlhWt5IgqsE882 rogid:fpheqrH7wLrgIp+jXGiRXV9K8yY882 intact-crc:3F1E2BD7D3F4F6FD|rigid:XIvLjTjWGVckPbUqGEHg5pDOyKs false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS2 uniprotkb:Q72AL8 intact:EBI-10066241|ensemblbacteria:AAS96395 intact:EBI-10066244|ensemblbacteria:AAS96450 psi-mi:q72as2_desvh(display_long)|uniprotkb:DVU_1919(locus name) psi-mi:q72al8_desvh(display_long)|uniprotkb:DVU_1974(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067902|imex:IM-22740-160 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000671(Peptidase A31, hydrogen uptake protein)|interpro:IPR023430|refseq:YP_011136.1|refseq:WP_010939205.1|ensemblbacteria:AAS96395(transcript)|ensemblbacteria:DVU_1919(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008233"(peptidase activity)|entrezgene/locuslink:2793335(identity) interpro:IPR023753|refseq:YP_011191.1|refseq:WP_010939260.1|ensemblbacteria:AAS96450(transcript)|ensemblbacteria:DVU_1974(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036188|entrezgene/locuslink:2795988(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:UPHJGAF+FsaEQEpiIkOGiSMdKbA882 rogid:iz7G+27COBziXzPRsyHptaObtAE882 intact-crc:B65FA64730CA6226|rigid:EOSsLpgdabfXgTp5BriYp6iN23I false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AQ1 uniprotkb:Q72BL3 intact:EBI-10067769|ensemblbacteria:AAS96417 intact:EBI-10067950|ensemblbacteria:AAS96100 psi-mi:q72aq1_desvh(display_long)|uniprotkb:DVU_1941(locus name) psi-mi:q72bl3_desvh(display_long)|uniprotkb:DVU_1622(locus name)|uniprotkb:purQ(gene name)|psi-mi:purQ(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067947|imex:IM-22740-163 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006357(HAD-superfamily hydrolase, subfamily IIA)|interpro:IPR023214|refseq:YP_011158.1|refseq:WP_010939227.1|ensemblbacteria:AAS96417(transcript)|ensemblbacteria:DVU_1941(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036412|entrezgene/locuslink:2793513(identity) interpro:IPR010075(Phosphoribosylformylglycinamidine synthase I)|interpro:IPR029062|refseq:YP_010841.1|refseq:WP_010938913.1|ensemblbacteria:AAS96100(transcript)|ensemblbacteria:DVU_1622(gene)|go:"GO:0004642"(phosphoribosylformylglycinamidine synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0006541"(glutamine metabolic process)|entrezgene/locuslink:2795883(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:1jHVEWHH42ytFEKtxEO8DaBalIY882 rogid:pp2k6swe1N7a+9pNsKkXsUHgFww882 intact-crc:FC14C8EBCA2669D2|rigid:BjzFwfBR4HkyUVo+D2ivOrEP61E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AQ3 uniprotkb:Q72AQ2 intact:EBI-10067964|ensemblbacteria:AAS96415 intact:EBI-10067970|ensemblbacteria:AAS96416 psi-mi:q72aq3_desvh(display_long)|uniprotkb:DVU_1939(locus name) psi-mi:q72aq2_desvh(display_long)|uniprotkb:DVU_1940(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067967|imex:IM-22740-164 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003953(Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal)|interpro:IPR009158(Anaerobic glycerol-3-phosphate dehydrogenase, subunit B)|refseq:WP_010939225.1|refseq:YP_011156.1|ensemblbacteria:AAS96415(transcript)|ensemblbacteria:DVU_1939(gene)|go:"GO:0004368"("glycerol-3-phosphate dehydrogenase (quinone) activity")|interpro:IPR036188|entrezgene/locuslink:2795316(identity) interpro:IPR041854|interpro:IPR000447(FAD-dependent glycerol-3-phosphate dehydrogenase)|interpro:IPR006076(FAD dependent oxidoreductase)|interpro:IPR017752(Anaerobic glycerol-3-phosphate dehydrogenase, A subunit)|refseq:YP_011157.1|refseq:WP_010939226.1|ensemblbacteria:AAS96416(transcript)|ensemblbacteria:DVU_1940(gene)|go:"GO:0004368"("glycerol-3-phosphate dehydrogenase (quinone) activity")|go:"GO:0005886"(plasma membrane)|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0009331"(glycerol-3-phosphate dehydrogenase complex)|go:"GO:0010181"(FMN binding)|go:"GO:0046174"(polyol catabolic process)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|entrezgene/locuslink:2793512(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:vwQc/Cox2C7ShF0sPx/UqNuunyw882 rogid:8qrPawzvsaA35hPIEHBjH51pbtA882 intact-crc:8B6928EF5E2A070A|rigid:Lp6RrcomEPJgMxkmR+t1YBK1aLg false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AP2 uniprotkb:Q72AP1 intact:EBI-10067915|ensemblbacteria:AAS96426 intact:EBI-10067921|ensemblbacteria:AAS96427 psi-mi:q72ap2_desvh(display_long)|uniprotkb:DVU_1950(locus name) psi-mi:q72ap1_desvh(display_long)|uniprotkb:Indolepyruvate ferredoxin oxidoreductase subunit alpha(gene name synonym)|uniprotkb:DVU_1951(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067918|imex:IM-22740-161 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_011167.1|refseq:WP_010939236.1|ensemblbacteria:AAS96426(transcript)|ensemblbacteria:DVU_1950(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|entrezgene/locuslink:2796185(identity) interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR017721(Indolepyruvate ferredoxin oxidoreductase, alpha subunit)|interpro:IPR029061|refseq:WP_010939237.1|refseq:YP_011168.1|ensemblbacteria:AAS96427(transcript)|ensemblbacteria:DVU_1951(gene)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0043805"(indolepyruvate ferredoxin oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2796186(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:XIFvbMdm9uLfPz0ytgOCBaOkzXI882 rogid:lUDGwTlHt7ECY7zmUCEGEf7kBNc882 intact-crc:D0522FEAA597F1DA|rigid:bYw5rMpZYYcAJaehzFHvpTWDxpA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727B7 uniprotkb:Q72AR1 intact:EBI-10068027|ensemblbacteria:AAS97410 intact:EBI-10068033|ensemblbacteria:AAS96407 psi-mi:q727b7_desvh(display_long)|uniprotkb:DVU_2938(locus name) psi-mi:q72ar1_desvh(display_long)|uniprotkb:DVU_1931(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068030|imex:IM-22740-167 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002708(Protein of unknown function DUF39)|refseq:YP_012150.1|refseq:WP_010940198.1|ensemblbacteria:AAS97410(transcript)|ensemblbacteria:DVU_2938(gene)|entrezgene/locuslink:2793976(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR018449|refseq:YP_011148.1|refseq:WP_010939217.1|ensemblbacteria:AAS96407(transcript)|ensemblbacteria:DVU_1931(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795308(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Yh3Az4Z6+Fja24xtMu0M+SurKtI882 rogid:37jX9UuPSQSj+NomyPZU1IsJ7rk882 intact-crc:1B1799759BF82A3D|rigid:UOsJUIQLncXuurFf4CYkm1AeOz8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR0 uniprotkb:Q72FF3 intact:EBI-10067999|ensemblbacteria:AAS96408 intact:EBI-10067996|ensemblbacteria:AAS94744 psi-mi:kad_desvh(display_long)|uniprotkb:ATP-AMP transphosphorylase(gene name synonym)|uniprotkb:"ATP:AMP phosphotransferase"(gene name synonym)|uniprotkb:Adenylate monophosphate kinase(gene name synonym)|uniprotkb:DVU_1932(locus name)|uniprotkb:adk(gene name)|psi-mi:adk(display_short) psi-mi:q72ff3_desvh(display_long)|uniprotkb:DVU_0261(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068006|imex:IM-22740-166 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033690|interpro:IPR000850(Adenylate kinase)|interpro:IPR027417|refseq:YP_011149.1|refseq:WP_010939218.1|ensemblbacteria:AAS96408(transcript)|ensemblbacteria:DVU_1932(gene)|go:"GO:0004017"(adenylate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0044209"(AMP salvage)|entrezgene/locuslink:2795309(identity) interpro:IPR006015("Universal stress protein (Usp)")|interpro:IPR006016(UspA)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_009485.1|refseq:WP_010937570.1|ensemblbacteria:AAS94744(transcript)|ensemblbacteria:DVU_0261(gene)|entrezgene/locuslink:2794103(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.32" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:noxTpH5A2VF0yy40ILXXCProXn0882 rogid:DPmcT0m1/bzdzacQUAw3qCATXoM882 intact-crc:5135A5CA6690BBC6|rigid:VF07L2P1gNREwUa1KiWoKUFM7Uk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR0 uniprotkb:Q726K3 intact:EBI-10067999|ensemblbacteria:AAS96408 intact:EBI-10068003|ensemblbacteria:AAS97575 psi-mi:kad_desvh(display_long)|uniprotkb:ATP-AMP transphosphorylase(gene name synonym)|uniprotkb:"ATP:AMP phosphotransferase"(gene name synonym)|uniprotkb:Adenylate monophosphate kinase(gene name synonym)|uniprotkb:DVU_1932(locus name)|uniprotkb:adk(gene name)|psi-mi:adk(display_short) psi-mi:q726k3_desvh(display_long)|uniprotkb:pal(gene name)|psi-mi:pal(display_short)|uniprotkb:DVU_3104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068006|imex:IM-22740-166 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033690|interpro:IPR000850(Adenylate kinase)|interpro:IPR027417|refseq:YP_011149.1|refseq:WP_010939218.1|ensemblbacteria:AAS96408(transcript)|ensemblbacteria:DVU_1932(gene)|go:"GO:0004017"(adenylate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0044209"(AMP salvage)|entrezgene/locuslink:2795309(identity) interpro:IPR039001|interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|interpro:IPR014169(Peptidoglycan-associated lipoprotein)|refseq:YP_012315.1|refseq:WP_010940363.1|ensemblbacteria:AAS97575(transcript)|ensemblbacteria:DVU_3104(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0009279"(cell outer membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0051301"(cell division)|interpro:IPR036737|entrezgene/locuslink:2795976(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.71" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:noxTpH5A2VF0yy40ILXXCProXn0882 rogid:7QjVwfb9nbIKh2Do1z5awDTeEUE882 intact-crc:5135A5CA6690BBC6|rigid:VF07L2P1gNREwUa1KiWoKUFM7Uk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR0 uniprotkb:P45573 intact:EBI-10067999|ensemblbacteria:AAS96408 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:kad_desvh(display_long)|uniprotkb:ATP-AMP transphosphorylase(gene name synonym)|uniprotkb:"ATP:AMP phosphotransferase"(gene name synonym)|uniprotkb:Adenylate monophosphate kinase(gene name synonym)|uniprotkb:DVU_1932(locus name)|uniprotkb:adk(gene name)|psi-mi:adk(display_short) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068006|imex:IM-22740-166 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033690|interpro:IPR000850(Adenylate kinase)|interpro:IPR027417|refseq:YP_011149.1|refseq:WP_010939218.1|ensemblbacteria:AAS96408(transcript)|ensemblbacteria:DVU_1932(gene)|go:"GO:0004017"(adenylate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0044209"(AMP salvage)|entrezgene/locuslink:2795309(identity) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072|entrezgene/locuslink:2796326(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.46" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:noxTpH5A2VF0yy40ILXXCProXn0882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:5135A5CA6690BBC6|rigid:VF07L2P1gNREwUa1KiWoKUFM7Uk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AQ3 uniprotkb:Q72AQ2 intact:EBI-10067964|ensemblbacteria:AAS96415 intact:EBI-10067970|ensemblbacteria:AAS96416 psi-mi:q72aq3_desvh(display_long)|uniprotkb:DVU_1939(locus name) psi-mi:q72aq2_desvh(display_long)|uniprotkb:DVU_1940(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067983|imex:IM-22740-165 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003953(Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal)|interpro:IPR009158(Anaerobic glycerol-3-phosphate dehydrogenase, subunit B)|refseq:WP_010939225.1|refseq:YP_011156.1|ensemblbacteria:AAS96415(transcript)|ensemblbacteria:DVU_1939(gene)|go:"GO:0004368"("glycerol-3-phosphate dehydrogenase (quinone) activity")|interpro:IPR036188|entrezgene/locuslink:2795316(identity) interpro:IPR041854|interpro:IPR000447(FAD-dependent glycerol-3-phosphate dehydrogenase)|interpro:IPR006076(FAD dependent oxidoreductase)|interpro:IPR017752(Anaerobic glycerol-3-phosphate dehydrogenase, A subunit)|refseq:YP_011157.1|refseq:WP_010939226.1|ensemblbacteria:AAS96416(transcript)|ensemblbacteria:DVU_1940(gene)|go:"GO:0004368"("glycerol-3-phosphate dehydrogenase (quinone) activity")|go:"GO:0005886"(plasma membrane)|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0009331"(glycerol-3-phosphate dehydrogenase complex)|go:"GO:0010181"(FMN binding)|go:"GO:0046174"(polyol catabolic process)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|entrezgene/locuslink:2793512(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:vwQc/Cox2C7ShF0sPx/UqNuunyw882 rogid:8qrPawzvsaA35hPIEHBjH51pbtA882 intact-crc:0C561ECDB3280343|rigid:Lp6RrcomEPJgMxkmR+t1YBK1aLg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BM3 uniprotkb:Q72AR5 intact:EBI-10068066|ensemblbacteria:AAS96090 intact:EBI-10068062|ensemblbacteria:AAS96403 psi-mi:q72bm3_desvh(display_long)|uniprotkb:DVU_1612(locus name) psi-mi:syi_desvh(display_long)|uniprotkb:Isoleucyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_1927(locus name)|uniprotkb:ileS(gene name)|psi-mi:ileS(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068059|imex:IM-22740-169 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002912(Amino acid-binding ACT)|refseq:YP_010831.1|refseq:WP_010938903.1|ensemblbacteria:AAS96090(transcript)|ensemblbacteria:DVU_1612(gene)|entrezgene/locuslink:2796065(identity) interpro:IPR033708|interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002301(Isoleucyl-tRNA synthetase, class Ia)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR010663(DNA glycosylase/AP lyase and isoleucyl tRNA synthetase, zinc finger domain)|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR023585|refseq:YP_011144.1|refseq:WP_010939213.1|ensemblbacteria:AAS96403(transcript)|ensemblbacteria:DVU_1927(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004822"(isoleucine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006428"(isoleucyl-tRNA aminoacylation)|go:"GO:0008270"(zinc ion binding)|entrezgene/locuslink:2795304(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.79" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:cUPUKCp7Aoyi1bdGib7iFptt9S0882 rogid:rwjMF/EMU9GtBS0Yg5InqDcT5HU882 intact-crc:A510A9125D684CCB|rigid:t2ezglGIyml1fnszYrmhlFqBtGc false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F89 uniprotkb:Q72AR8 intact:EBI-10068092|ensemblbacteria:AAS94808 intact:EBI-10068099|ensemblbacteria:AAS96400 psi-mi:q72f89_desvh(display_long)|uniprotkb:DVU_0325(locus name)|uniprotkb:hypD(gene name)|psi-mi:hypD(display_short) psi-mi:q72ar8_desvh(display_long)|uniprotkb:DVU_1924(locus name)|uniprotkb:hypC(gene name)|psi-mi:hypC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068096|imex:IM-22740-171 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002780(Hydrogenase formation HypD protein)|refseq:YP_009549.1|refseq:WP_010937632.1|ensemblbacteria:AAS94808(transcript)|ensemblbacteria:DVU_0325(gene)|go:"GO:0046872"(metal ion binding)|interpro:IPR042243|interpro:IPR042244|entrezgene/locuslink:2794327(identity) interpro:IPR001109("Hydrogenase expression/formation protein (HUPF/HYPC)")|refseq:YP_011141.1|refseq:WP_010939210.1|ensemblbacteria:AAS96400(transcript)|ensemblbacteria:DVU_1924(gene)|entrezgene/locuslink:2793340(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:1a0X/rE8bnCMqYTDpcVesfb+F2w882 rogid:jQ67NXN/qOVP9dkMPrWZC15RQx8882 intact-crc:8778DCEE85D14734|rigid:cbxaderP3AzRW0hCCCLlQB5QeHY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS2 uniprotkb:Q72AL8 intact:EBI-10066241|ensemblbacteria:AAS96395 intact:EBI-10066244|ensemblbacteria:AAS96450 psi-mi:q72as2_desvh(display_long)|uniprotkb:DVU_1919(locus name) psi-mi:q72al8_desvh(display_long)|uniprotkb:DVU_1974(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068126|imex:IM-22740-173 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000671(Peptidase A31, hydrogen uptake protein)|interpro:IPR023430|refseq:YP_011136.1|refseq:WP_010939205.1|ensemblbacteria:AAS96395(transcript)|ensemblbacteria:DVU_1919(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008233"(peptidase activity)|entrezgene/locuslink:2793335(identity) interpro:IPR023753|refseq:YP_011191.1|refseq:WP_010939260.1|ensemblbacteria:AAS96450(transcript)|ensemblbacteria:DVU_1974(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036188|entrezgene/locuslink:2795988(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:UPHJGAF+FsaEQEpiIkOGiSMdKbA882 rogid:iz7G+27COBziXzPRsyHptaObtAE882 intact-crc:E45CFF093080965B|rigid:uXe3ESvOiZNYDM0yB0BG5kzAefk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS2 uniprotkb:Q727C0 intact:EBI-10066241|ensemblbacteria:AAS96395 intact:EBI-10066250|ensemblbacteria:AAS97407 psi-mi:q72as2_desvh(display_long)|uniprotkb:DVU_1919(locus name) psi-mi:gpma_desvh(display_long)|uniprotkb:gpm(gene name synonym)|uniprotkb:DVU_2935(locus name)|uniprotkb:gpmA(gene name)|psi-mi:gpmA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068126|imex:IM-22740-173 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000671(Peptidase A31, hydrogen uptake protein)|interpro:IPR023430|refseq:YP_011136.1|refseq:WP_010939205.1|ensemblbacteria:AAS96395(transcript)|ensemblbacteria:DVU_1919(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008233"(peptidase activity)|entrezgene/locuslink:2793335(identity) interpro:IPR001345(Phosphoglycerate/bisphosphoglycerate mutase)|interpro:IPR005952(Phosphoglycerate mutase 1)|interpro:IPR013078(Phosphoglycerate mutase)|interpro:IPR029033|refseq:YP_012147.1|refseq:WP_010940195.1|ensemblbacteria:AAS97407(transcript)|ensemblbacteria:DVU_2935(gene)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0046538"(2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity)|entrezgene/locuslink:2793973(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:UPHJGAF+FsaEQEpiIkOGiSMdKbA882 rogid:+bQP8/z+NmcGQjtcM5ZfLItjzVo882 intact-crc:E45CFF093080965B|rigid:uXe3ESvOiZNYDM0yB0BG5kzAefk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C12 uniprotkb:Q72AS3 intact:EBI-10068160|ensemblbacteria:AAS95950 intact:EBI-9012330 psi-mi:q72c12_desvh(display_long)|uniprotkb:DVU_1472(locus name) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068163|imex:IM-22740-175 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_011792370.1|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|ensemblbacteria:AAS95950(transcript)|ensemblbacteria:DVU_1472(gene)|interpro:IPR041699|entrezgene/locuslink:2794141(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:HXduubtYgFDudVqnqaHL/EtV2nE882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:0CDEDC65B63E52A3|rigid://epB9WZ8nKLSDogQIOdR3p4J5Y false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS8 uniprotkb:Q72CW3 intact:EBI-10068219|ensemblbacteria:AAS96389 intact:EBI-10068222|ensemblbacteria:AAS95648 psi-mi:q72as8_desvh(display_long)|uniprotkb:DVU_1913(locus name) psi-mi:q72cw3_desvh(display_long)|uniprotkb:DVU_1170(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068225|imex:IM-22740-179 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041740|interpro:IPR001048(Aspartate/glutamate/uridylate kinase)|interpro:IPR001341(Aspartate kinase region)|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR005260(Aspartate kinase, monofunctional class)|interpro:IPR018042|interpro:IPR027795|refseq:YP_011130.1|refseq:WP_010939199.1|ensemblbacteria:AAS96389(transcript)|ensemblbacteria:DVU_1913(gene)|go:"GO:0004072"(aspartate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0009088"(threonine biosynthetic process)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|interpro:IPR036393|entrezgene/locuslink:2793686(identity) refseq:YP_010389.1|ensemblbacteria:AAS95648(transcript)|ensemblbacteria:DVU_1170(gene)|entrezgene/locuslink:2794858(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:HE9TyJTBPSQEIR8r17NML2E9oCU882 rogid:V35bdQV7ircEKeI2sf5GL++sNs8882 intact-crc:C80CCBF2A3EB61A6|rigid:/7h6t8NQ3ked4HSWjcTskyFGC9I false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q3V891 uniprotkb:Q72AS4 intact:EBI-10068189|ensemblbacteria:AAS96384 intact:EBI-9012326|ensemblbacteria:AAS96393 psi-mi:pdxj_desvh(display_long)|uniprotkb:DVU_1908(locus name)|uniprotkb:pdxJ(gene name)|psi-mi:pdxJ(display_short) psi-mi:q72as4_desvh(display_long)|uniprotkb:hysB(gene name)|psi-mi:hysB(display_short)|uniprotkb:DVU_1917(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068193|imex:IM-22740-177 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004569("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ")|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011125.1|refseq:WP_010939194.1|ensemblbacteria:AAS96384(transcript)|ensemblbacteria:DVU_1908(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0033856"(pyridoxine 5'-phosphate synthase activity)|interpro:IPR036130|entrezgene/locuslink:2793681(identity) refseq:WP_010939203.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001821([Ni-Fe]-hydrogenase, small subunit)|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR019546|interpro:IPR027394|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011134.1|interpro:IPR037024|interpro:IPR037148|ensemblbacteria:AAS96393(transcript)|ensemblbacteria:DVU_1917(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0009375"(ferredoxin hydrogenase complex)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0047806"(cytochrome-c3 hydrogenase activity)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793333(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:/DqexomS5wWjEd6c27pBE+pkYY8882 rogid:cFMZoNAlsTxUdQceJ2E0f3gFhhE882 intact-crc:A34255D110D5F8CC|rigid:LCaYNbJvARXAfjF25MOAy8dHhuM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU3 uniprotkb:Q72AU2 intact:EBI-10068264|ensemblbacteria:AAS96373 intact:EBI-10068257|ensemblbacteria:AAS96374 psi-mi:sygb_desvh(display_long)|uniprotkb:Glycyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:DVU_1897(locus name)|uniprotkb:glyS(gene name)|psi-mi:glyS(display_short) psi-mi:syga_desvh(display_long)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:DVU_1898(locus name)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068261|imex:IM-22740-181 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|interpro:IPR015944(Glycyl-tRNA synthetase, class IIc, beta subunit)|refseq:YP_011114.1|refseq:WP_010939183.1|ensemblbacteria:AAS96373(transcript)|ensemblbacteria:DVU_1897(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|entrezgene/locuslink:2794708(identity) interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:YP_011115.1|refseq:WP_010939184.1|ensemblbacteria:AAS96374(transcript)|ensemblbacteria:DVU_1898(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|entrezgene/locuslink:2794709(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:k2bvkoXxWkZtFh/MnAwUgMJhQWA882 rogid:wk4lgJci269FcwmzVC1ITw0mVpw882 intact-crc:D1CD55D0C242BD16|rigid:bEnu9sinTMZfQu7AukW3U8Jx21A false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q72BR3 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10068281|ensemblbacteria:AAS96049 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:q72br3_desvh(display_long)|uniprotkb:ATP-dependent helicase Rho(gene name synonym)|uniprotkb:DVU_1571(locus name)|uniprotkb:rho(gene name)|psi-mi:rho(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068285|imex:IM-22740-182 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR041703|refseq:WP_049758073.1|interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004665(Transcription termination factor Rho)|interpro:IPR011112(Rho termination factor, N-terminal)|interpro:IPR011113(Rho termination factor, RNA-binding)|interpro:IPR011129(Cold shock protein)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR027417|ensemblbacteria:AAS96049(transcript)|ensemblbacteria:DVU_1571(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004386"(helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0008186"(ATP-dependent activity, acting on RNA)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036269|entrezgene/locuslink:2793462(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.37" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:nmBFGDLwcKgopq/FKRbe80wgx+0882 intact-crc:1B0607C842774290|rigid:ldyo2Om81lADsyKvHbkJ0pKA0MY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AT0 uniprotkb:Q72DT1 intact:EBI-10068241|ensemblbacteria:AAS96387 intact:EBI-10068244|ensemblbacteria:AAS95328 psi-mi:q72at0_desvh(display_long)|uniprotkb:DVU_1911(locus name) psi-mi:q72dt1_desvh(display_long)|uniprotkb:DVU_0848(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068238|imex:IM-22740-180 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|refseq:YP_011128.1|refseq:WP_010939197.1|ensemblbacteria:AAS96387(transcript)|ensemblbacteria:DVU_1911(gene)|entrezgene/locuslink:2793684(identity) refseq:YP_010069.1|refseq:WP_010938148.1|ensemblbacteria:AAS95328(transcript)|ensemblbacteria:DVU_0848(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR023753|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2795199(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.81" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:7VdW67jOahrlNbCunECxHoLtlA8882 rogid:8fJEeFdsNociGk3VqQ6Jvr/Q4gs882 intact-crc:3A259FD309A46BF4|rigid:pUGRTezmviR2DeyYlz0qC5e+KpA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B16 uniprotkb:Q72AU9 intact:EBI-10068314|ensemblbacteria:AAS96300 intact:EBI-10068317|ensemblbacteria:AAS96367 psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:q72au9_desvh(display_long)|uniprotkb:DVU_1891(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068311|imex:IM-22740-184 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793484(identity) interpro:IPR018641|interpro:IPR029044|refseq:YP_011108.1|ensemblbacteria:AAS96367(transcript)|ensemblbacteria:DVU_1891(gene)|entrezgene/locuslink:2794702(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.83" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 rogid:XPZ5Aw4EDJt0frQm7v3aeOFQ56E882 intact-crc:3A7D2A806118B287|rigid:xp+moHwqrYW/WTI5oa1MeRBcNCs false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AV5 uniprotkb:Q72DX0 intact:EBI-10068341|ensemblbacteria:AAS96361 intact:EBI-10068337|ensemblbacteria:AAS95289 psi-mi:gatb_desvh(display_long)|uniprotkb:DVU_1885(locus name)|uniprotkb:gatB(gene name)|psi-mi:gatB(display_short) psi-mi:gatc_desvh(display_long)|uniprotkb:DVU_0809(locus name)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068334|imex:IM-22740-185 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042114|interpro:IPR023168|interpro:IPR003789(GatB/Yqey)|interpro:IPR004413("Glutamyl-tRNA(Gln) amidotransferase B subunit")|interpro:IPR006075(GatB N-terminal region)|interpro:IPR017958|interpro:IPR017959|interpro:IPR018027|refseq:YP_011102.1|refseq:WP_010939171.1|ensemblbacteria:AAS96361(transcript)|ensemblbacteria:DVU_1885(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|entrezgene/locuslink:2793554(identity) interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|refseq:YP_010030.1|refseq:WP_010938110.1|ensemblbacteria:AAS95289(transcript)|ensemblbacteria:DVU_0809(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|entrezgene/locuslink:2796532(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5dDsK9dmzftNNeagZxDm1pWlmBU882 rogid:qL44j0V4vWpB/M5XplDodXtsSAo882 intact-crc:C85F23822F1DBC9C|rigid:zI5RYGk9l1KY6FlippGYFX+xW34 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AV5 uniprotkb:Q72DX1 intact:EBI-10068341|ensemblbacteria:AAS96361 intact:EBI-10068330|ensemblbacteria:AAS95288 psi-mi:gatb_desvh(display_long)|uniprotkb:DVU_1885(locus name)|uniprotkb:gatB(gene name)|psi-mi:gatB(display_short) psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068334|imex:IM-22740-185 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042114|interpro:IPR023168|interpro:IPR003789(GatB/Yqey)|interpro:IPR004413("Glutamyl-tRNA(Gln) amidotransferase B subunit")|interpro:IPR006075(GatB N-terminal region)|interpro:IPR017958|interpro:IPR017959|interpro:IPR018027|refseq:YP_011102.1|refseq:WP_010939171.1|ensemblbacteria:AAS96361(transcript)|ensemblbacteria:DVU_1885(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|entrezgene/locuslink:2793554(identity) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928|entrezgene/locuslink:2796531(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5dDsK9dmzftNNeagZxDm1pWlmBU882 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 intact-crc:C85F23822F1DBC9C|rigid:zI5RYGk9l1KY6FlippGYFX+xW34 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F19 uniprotkb:Q72AX6 intact:EBI-10068421|ensemblbacteria:AAS94879 intact:EBI-10064902|ensemblbacteria:AAS96340 psi-mi:q72f19_desvh(display_long)|uniprotkb:DVU_0396(locus name)|uniprotkb:hup-1(gene name)|psi-mi:hup-1(display_short) psi-mi:q72ax6_desvh(display_long)|uniprotkb:DVU_1864(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068425|imex:IM-22740-190 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_009620.1|interpro:IPR005684(Integration host factor, alpha subunit)|refseq:WP_010937703.1|ensemblbacteria:AAS94879(transcript)|ensemblbacteria:DVU_0396(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006310"(DNA recombination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006417"(regulation of translation)|entrezgene/locuslink:2796538(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_011081.1|refseq:WP_010939150.1|ensemblbacteria:AAS96340(transcript)|ensemblbacteria:DVU_1864(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793646(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:mNwdKUGDFbiz+xsocUEaTpv9PKs882 rogid:n21OwmwqHiyRGMYLOFMYc5upF1E882 intact-crc:361F3917F7658C7D|rigid:jAkf/NyUJH5eLi1K1viBNxhHZW0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CM6 uniprotkb:Q72AW7 intact:EBI-10066180|ensemblbacteria:AAS95735 intact:EBI-10068407|ensemblbacteria:AAS96349 psi-mi:q72cm6_desvh(display_long)|uniprotkb:DVU_1257(locus name) psi-mi:q72aw7_desvh(display_long)|uniprotkb:DVU_1873(locus name)|uniprotkb:ppiB-2(gene name)|psi-mi:ppiB-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068404|imex:IM-22740-189 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_010476.1|refseq:WP_010938553.1|ensemblbacteria:AAS95735(transcript)|ensemblbacteria:DVU_1257(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2794603(identity) refseq:WP_011792177.1|interpro:IPR002130(Peptidyl-prolyl cis-trans isomerase, cyclophilin-type)|interpro:IPR020892|interpro:IPR029000|interpro:IPR024936|ensemblbacteria:AAS96349(transcript)|ensemblbacteria:DVU_1873(gene)|go:"GO:0003755"(peptidyl-prolyl cis-trans isomerase activity)|go:"GO:0006457"(protein folding)|interpro:IPR044665|entrezgene/locuslink:2794317(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.28" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ruXcKfPiOxTsYJSnCzXA90m2O+o882 rogid:HH/qD05hqrEqtKpMr6tovuyIeY0882 intact-crc:B59D5BEA3C9A0B04|rigid:wOjtl+W6oeyVB9lC1Z8vhyJrUEE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AW4 uniprotkb:Q72AW5 intact:EBI-10068372|ensemblbacteria:AAS96352 intact:EBI-10068375|ensemblbacteria:AAS96351 psi-mi:q72aw4_desvh(display_long)|uniprotkb:DVU_1876(locus name) psi-mi:q72aw5_desvh(display_long)|uniprotkb:DVU_1875(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068391|imex:IM-22740-188 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001623(Heat shock protein DnaJ, N-terminal)|interpro:IPR002939(Chaperone DnaJ, C-terminal)|interpro:IPR008971(HSP40/DnaJ peptide-binding)|interpro:IPR018253|refseq:YP_011093.1|refseq:WP_010939162.1|ensemblbacteria:AAS96352(transcript)|ensemblbacteria:DVU_1876(gene)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036869|entrezgene/locuslink:2794320(identity) refseq:YP_011092.1|refseq:WP_010939161.1|ensemblbacteria:AAS96351(transcript)|ensemblbacteria:DVU_1875(gene)|entrezgene/locuslink:2794319(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lYpy6gR6cAedxr5LBah9piNkyBw882 rogid:teM1VjT6+wAHBOOgznm0s6z3ny0882 intact-crc:CAF97EE7708EFB36|rigid:xRUaIoZiqLv949rjGFfXk9unu8w false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AW5 uniprotkb:Q72AW4 intact:EBI-10068375|ensemblbacteria:AAS96351 intact:EBI-10068372|ensemblbacteria:AAS96352 psi-mi:q72aw5_desvh(display_long)|uniprotkb:DVU_1875(locus name) psi-mi:q72aw4_desvh(display_long)|uniprotkb:DVU_1876(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068378|imex:IM-22740-187 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011092.1|refseq:WP_010939161.1|ensemblbacteria:AAS96351(transcript)|ensemblbacteria:DVU_1875(gene)|entrezgene/locuslink:2794319(identity) interpro:IPR001623(Heat shock protein DnaJ, N-terminal)|interpro:IPR002939(Chaperone DnaJ, C-terminal)|interpro:IPR008971(HSP40/DnaJ peptide-binding)|interpro:IPR018253|refseq:YP_011093.1|refseq:WP_010939162.1|ensemblbacteria:AAS96352(transcript)|ensemblbacteria:DVU_1876(gene)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036869|entrezgene/locuslink:2794320(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:teM1VjT6+wAHBOOgznm0s6z3ny0882 rogid:lYpy6gR6cAedxr5LBah9piNkyBw882 intact-crc:295FF7E181E00140|rigid:xRUaIoZiqLv949rjGFfXk9unu8w false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AZ0 uniprotkb:Q72B50 intact:EBI-10068438|ensemblbacteria:AAS96326 intact:EBI-10067283|ensemblbacteria:AAS96265 psi-mi:q72az0_desvh(display_long)|uniprotkb:DVU_1850(locus name) psi-mi:q72b50_desvh(display_long)|uniprotkb:Sigma-70(gene name synonym)|uniprotkb:DVU_1788(locus name)|uniprotkb:rpoD(gene name)|psi-mi:rpoD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068441|imex:IM-22740-191 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|refseq:YP_011067.1|refseq:WP_010939136.1|ensemblbacteria:AAS96326(transcript)|ensemblbacteria:DVU_1850(gene)|entrezgene/locuslink:2795913(identity) interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007127(RNA polymerase sigma factor 70, region 1.1)|interpro:IPR007624(RNA polymerase sigma-70 region 3)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR009042(RNA polymerase sigma-70 region 1.2)|interpro:IPR012760(RNA polymerase sigma factor RpoD, C-terminal)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|interpro:IPR028630|refseq:YP_011006.1|refseq:WP_010939076.1|ensemblbacteria:AAS96265(transcript)|ensemblbacteria:DVU_1788(gene)|go:"GO:0001123"|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016987"(sigma factor activity)|interpro:IPR036388|interpro:IPR042189|entrezgene/locuslink:2793314(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.52" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:NtrIYgxoDaITCFYFa7oAoQ8NcQ8882 rogid:uXlgHdylMF0gkzY6Dq/5S1/2Dzw882 intact-crc:C1CFE44652F2AEF1|rigid:rbbEk8Sse6ybY4GMLrxQqmBUIeE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AZ0 uniprotkb:Q72CB5 intact:EBI-10068438|ensemblbacteria:AAS96326 intact:EBI-10068444|ensemblbacteria:AAS95846 psi-mi:q72az0_desvh(display_long)|uniprotkb:DVU_1850(locus name) psi-mi:q72cb5_desvh(display_long)|uniprotkb:DVU_1368(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068441|imex:IM-22740-191 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|refseq:YP_011067.1|refseq:WP_010939136.1|ensemblbacteria:AAS96326(transcript)|ensemblbacteria:DVU_1850(gene)|entrezgene/locuslink:2795913(identity) interpro:IPR001763(Rhodanese-like)|interpro:IPR016156(FAD/NAD-linked reductase, dimerisation)|interpro:IPR023753|refseq:YP_010587.1|refseq:WP_010938663.1|ensemblbacteria:AAS95846(transcript)|ensemblbacteria:DVU_1368(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|interpro:IPR036873|entrezgene/locuslink:2795092(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.65" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:NtrIYgxoDaITCFYFa7oAoQ8NcQ8882 rogid:zAfVANYX4Q79NnmesRRLpD8kUXA882 intact-crc:C1CFE44652F2AEF1|rigid:rbbEk8Sse6ybY4GMLrxQqmBUIeE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DR5 uniprotkb:Q72B00 intact:EBI-10068478|ensemblbacteria:AAS95344 intact:EBI-10068484|ensemblbacteria:AAS96316 psi-mi:q72dr5_desvh(display_long)|uniprotkb:DVU_0864(locus name) psi-mi:tsad_desvh(display_long)|uniprotkb:N6-L-threonylcarbamoyladenine synthase(gene name synonym)|uniprotkb:gcp(gene name synonym)|uniprotkb:"t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD"(gene name synonym)|uniprotkb:tRNA threonylcarbamoyladenosine biosynthesis protein TsaD(gene name synonym)|uniprotkb:DVU_1840(locus name)|uniprotkb:tsaD(gene name)|psi-mi:tsaD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068481|imex:IM-22740-193 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000905(Peptidase M22, glycoprotease)|interpro:IPR022496|refseq:YP_010085.1|refseq:WP_010938163.1|ensemblbacteria:AAS95344(transcript)|ensemblbacteria:DVU_0864(gene)|go:"GO:0002949"(tRNA threonylcarbamoyladenosine modification)|go:"GO:0008233"(peptidase activity)|interpro:IPR043129|entrezgene/locuslink:2796161(identity) interpro:IPR000905(Peptidase M22, glycoprotease)|interpro:IPR017860|interpro:IPR017861|interpro:IPR022450|refseq:YP_011057.1|refseq:WP_010939126.1|ensemblbacteria:AAS96316(transcript)|ensemblbacteria:DVU_1840(gene)|go:"GO:0002949"(tRNA threonylcarbamoyladenosine modification)|go:"GO:0005506"(iron ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0061711"("N(6)-L-threonylcarbamoyladenine synthase activity")|interpro:IPR043129|entrezgene/locuslink:2796474(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:g2lFoirIYGplDml+E1YZ5TRZOwk882 rogid:D0WWzs3UvatBRfi2m4zNX5zVwfc882 intact-crc:68F369C668D8D4E8|rigid:1Hb6zfh/l8E+y/43A0Gpa6elbhA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CM6 uniprotkb:Q72B01 intact:EBI-10066180|ensemblbacteria:AAS95735 intact:EBI-10068511|ensemblbacteria:AAS96315 psi-mi:q72cm6_desvh(display_long)|uniprotkb:DVU_1257(locus name) psi-mi:q72b01_desvh(display_long)|uniprotkb:DVU_1839(locus name)|uniprotkb:trx(gene name)|psi-mi:trx(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068515|imex:IM-22740-195 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:YP_010476.1|refseq:WP_010938553.1|ensemblbacteria:AAS95735(transcript)|ensemblbacteria:DVU_1257(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR035979|entrezgene/locuslink:2794603(identity) interpro:IPR005746(Thioredoxin)|interpro:IPR013766(Thioredoxin domain)|interpro:IPR017937|refseq:YP_011056.1|refseq:WP_010939125.1|ensemblbacteria:AAS96315(transcript)|ensemblbacteria:DVU_1839(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|interpro:IPR036249|entrezgene/locuslink:2796473(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.62" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ruXcKfPiOxTsYJSnCzXA90m2O+o882 rogid:jnT2CMwSbUXjQG474QgcdNE2xrg882 intact-crc:5EE75A7628511198|rigid:P1KEPuG3qDb+xJrBpe3K0HZUV84 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AT3 uniprotkb:Q72B12 intact:EBI-10068534|ensemblbacteria:AAS96383 intact:EBI-10068531|ensemblbacteria:AAS96304 psi-mi:q72at3_desvh(display_long)|uniprotkb:DVU_1907(locus name)|uniprotkb:ugd(gene name)|psi-mi:ugd(display_short) psi-mi:q72b12_desvh(display_long)|uniprotkb:DVU_1827(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068528|imex:IM-22740-196 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028357|refseq:YP_011124.1|refseq:WP_010939193.1|ensemblbacteria:AAS96383(transcript)|ensemblbacteria:DVU_1907(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0003979"(UDP-glucose 6-dehydrogenase activity)|go:"GO:0006065"(UDP-glucuronate biosynthetic process)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291|entrezgene/locuslink:2793680(identity) interpro:IPR002933(Peptidase M20)|interpro:IPR011650(Peptidase M20, dimerisation)|refseq:YP_011045.1|refseq:WP_010939114.1|ensemblbacteria:AAS96304(transcript)|ensemblbacteria:DVU_1827(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036264|entrezgene/locuslink:2793488(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.93" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:DlaZgne2xG/LcOH7et/EfWEYUd0882 rogid:McvcaVSCx3yCOY4vwFS4oq6ucVc882 intact-crc:74520E662F865B12|rigid:g5dhN8HsQqxhncuMxcQ1Oj0GSn4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B16 uniprotkb:Q72B17 intact:EBI-10068314|ensemblbacteria:AAS96300 intact:EBI-10068561|ensemblbacteria:AAS96299 psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068564|imex:IM-22740-198 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793484(identity) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2793483(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 intact-crc:D342879E482B9D19|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B16 uniprotkb:Q72B18 intact:EBI-10068314|ensemblbacteria:AAS96300 intact:EBI-10068567|ensemblbacteria:AAS96298 psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068564|imex:IM-22740-198 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793484(identity) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485|entrezgene/locuslink:2793482(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 intact-crc:D342879E482B9D19|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B17 uniprotkb:Q72B18 intact:EBI-10068561|ensemblbacteria:AAS96299 intact:EBI-10068567|ensemblbacteria:AAS96298 psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068584|imex:IM-22740-199 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2793483(identity) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485|entrezgene/locuslink:2793482(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 intact-crc:BE950EA84AC39E90|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B17 uniprotkb:Q72B16 intact:EBI-10068561|ensemblbacteria:AAS96299 intact:EBI-10068314|ensemblbacteria:AAS96300 psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068584|imex:IM-22740-199 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2793483(identity) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793484(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 intact-crc:BE950EA84AC39E90|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DB6 uniprotkb:Q72B19 intact:EBI-10068652|ensemblbacteria:AAS95493 intact:EBI-10068658|ensemblbacteria:AAS96297 psi-mi:q72db6_desvh(display_long)|uniprotkb:DVU_1013(locus name) psi-mi:q72b19_desvh(display_long)|uniprotkb:DVU_1820(locus name)|uniprotkb:yajC(gene name)|psi-mi:yajC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068655|imex:IM-22740-203 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003423(Outer membrane efflux protein)|interpro:IPR010130(Type I secretion outer membrane protein, TolC)|refseq:YP_010234.1|refseq:WP_010938312.1|ensemblbacteria:AAS95493(transcript)|ensemblbacteria:DVU_1013(gene)|go:"GO:0015562"(efflux transmembrane transporter activity)|go:"GO:0019867"(outer membrane)|entrezgene/locuslink:2793736(identity) interpro:IPR003849(YajC)|refseq:YP_011038.1|refseq:WP_010939107.1|ensemblbacteria:AAS96297(transcript)|ensemblbacteria:DVU_1820(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2793481(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.75" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:i+l9PTpDDituM8+y0IRIa3Ck/3w882 rogid:VSWpSoyoEFR/Ne1zR7xpZKpPyB8882 intact-crc:E6A5F8B2F9047D84|rigid:vZJjS7b3FFQnYkL5+l/7qq8Ktqo false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B43 uniprotkb:Q72E15 intact:EBI-10068679|ensemblbacteria:AAS96272 intact:EBI-10068672|ensemblbacteria:AAS95244 psi-mi:q72b43_desvh(display_long)|uniprotkb:DVU_1795(locus name)|uniprotkb:hup-3(gene name)|psi-mi:hup-3(display_short) psi-mi:q72e15_desvh(display_long)|uniprotkb:DVU_0764(locus name)|uniprotkb:hup-2(gene name)|psi-mi:hup-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068676|imex:IM-22740-204 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_011013.1|refseq:WP_010939083.1|ensemblbacteria:AAS96272(transcript)|ensemblbacteria:DVU_1795(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793321(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|ensemblbacteria:AAS95244(transcript)|ensemblbacteria:DVU_0764(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2795568(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.47" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5cQx/aWrXbSgzWsjOrE3XICa3P0882 rogid:/wwCkRQTWguPsUC4y05FImBApb8882 intact-crc:5F4A9373B45A8E64|rigid:mIBwTaibj+DPiAA4N1Bte7SKJeM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B43 uniprotkb:Q72AL0 intact:EBI-10068679|ensemblbacteria:AAS96272 intact:EBI-10067497|ensemblbacteria:AAS96458 psi-mi:q72b43_desvh(display_long)|uniprotkb:DVU_1795(locus name)|uniprotkb:hup-3(gene name)|psi-mi:hup-3(display_short) psi-mi:q72al0_desvh(display_long)|uniprotkb:DVU_1982(locus name)|uniprotkb:rhlE(gene name)|psi-mi:rhlE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068676|imex:IM-22740-204 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_011013.1|refseq:WP_010939083.1|ensemblbacteria:AAS96272(transcript)|ensemblbacteria:DVU_1795(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793321(identity) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014014(RNA helicase, DEAD-box type, Q motif)|interpro:IPR027417|refseq:YP_011199.1|refseq:WP_010939268.1|ensemblbacteria:AAS96458(transcript)|ensemblbacteria:DVU_1982(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0016787"(hydrolase activity)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793788(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.84" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5cQx/aWrXbSgzWsjOrE3XICa3P0882 rogid:zKmJjhrid6qDgJl5ptCURc+2Jfc882 intact-crc:5F4A9373B45A8E64|rigid:mIBwTaibj+DPiAA4N1Bte7SKJeM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B43 uniprotkb:Q726Y3 intact:EBI-10068679|ensemblbacteria:AAS96272 intact:EBI-10066148|ensemblbacteria:AAS97444 psi-mi:q72b43_desvh(display_long)|uniprotkb:DVU_1795(locus name)|uniprotkb:hup-3(gene name)|psi-mi:hup-3(display_short) psi-mi:q726y3_desvh(display_long)|uniprotkb:DVU_2973(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068676|imex:IM-22740-204 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_011013.1|refseq:WP_010939083.1|ensemblbacteria:AAS96272(transcript)|ensemblbacteria:DVU_1795(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793321(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012184.1|refseq:WP_010940232.1|ensemblbacteria:AAS97444(transcript)|ensemblbacteria:DVU_2973(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2796287(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.79" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5cQx/aWrXbSgzWsjOrE3XICa3P0882 rogid:XVJm/0Y4aonzgyfUQTeJZvq03wI882 intact-crc:5F4A9373B45A8E64|rigid:mIBwTaibj+DPiAA4N1Bte7SKJeM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B18 uniprotkb:Q72B16 intact:EBI-10068567|ensemblbacteria:AAS96298 intact:EBI-10068314|ensemblbacteria:AAS96300 psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068618|imex:IM-22740-201 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485|entrezgene/locuslink:2793482(identity) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793484(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 intact-crc:EBE351A86731B806|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B18 uniprotkb:Q72B17 intact:EBI-10068567|ensemblbacteria:AAS96298 intact:EBI-10068561|ensemblbacteria:AAS96299 psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068618|imex:IM-22740-201 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485|entrezgene/locuslink:2793482(identity) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2793483(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 intact-crc:EBE351A86731B806|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B90 uniprotkb:Q72DA1 intact:EBI-10067827|ensemblbacteria:AAS96223 intact:EBI-10068720|ensemblbacteria:AAS95508 psi-mi:q72b90_desvh(display_long)|uniprotkb:DVU_1746(locus name) psi-mi:kcy_desvh(display_long)|uniprotkb:Cytidine monophosphate kinase(gene name synonym)|uniprotkb:DVU_1028(locus name)|uniprotkb:cmk(gene name)|psi-mi:cmk(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068717|imex:IM-22740-206 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001525(C-5 cytosine-specific DNA methylase)|interpro:IPR018117|interpro:IPR029063|refseq:YP_010964.1|refseq:WP_010939034.1|ensemblbacteria:AAS96223(transcript)|ensemblbacteria:DVU_1746(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|entrezgene/locuslink:2795849(identity) refseq:WP_010938327.1|interpro:IPR003136(Cytidylate kinase)|interpro:IPR011994(Cytidylate kinase region)|interpro:IPR027417|refseq:YP_010249.1|ensemblbacteria:AAS95508(transcript)|ensemblbacteria:DVU_1028(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006220"(pyrimidine nucleotide metabolic process)|go:"GO:0036430"(CMP kinase activity)|go:"GO:0036431"(dCMP kinase activity)|entrezgene/locuslink:2794525(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5a6bQ7+vE7/Tqc8NwCBf2zrQk50882 rogid:ClS/sOrefmGxSmfBt++7bwK30OQ882 intact-crc:E3719FCFAD7C5AD6|rigid:W95TVzwPofW8MH/eEXXP5AyGR5g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B90 uniprotkb:Q72BE4 intact:EBI-10067827|ensemblbacteria:AAS96223 intact:EBI-10068714|ensemblbacteria:AAS96169 psi-mi:q72b90_desvh(display_long)|uniprotkb:DVU_1746(locus name) psi-mi:q72be4_desvh(display_long)|uniprotkb:DVU_1692(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068717|imex:IM-22740-206 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001525(C-5 cytosine-specific DNA methylase)|interpro:IPR018117|interpro:IPR029063|refseq:YP_010964.1|refseq:WP_010939034.1|ensemblbacteria:AAS96223(transcript)|ensemblbacteria:DVU_1746(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|entrezgene/locuslink:2795849(identity) refseq:YP_010910.1|refseq:WP_010938981.1|ensemblbacteria:AAS96169(transcript)|ensemblbacteria:DVU_1692(gene)|entrezgene/locuslink:2795826(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.79" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5a6bQ7+vE7/Tqc8NwCBf2zrQk50882 rogid:qV7vrqWwYWiVwQ8wUhS8O2b9EBc882 intact-crc:E3719FCFAD7C5AD6|rigid:W95TVzwPofW8MH/eEXXP5AyGR5g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA0 uniprotkb:Q72BI4 intact:EBI-10068791|ensemblbacteria:AAS95509 intact:EBI-10068795|ensemblbacteria:AAS96129 psi-mi:his8_desvh(display_long)|uniprotkb:Imidazole acetol-phosphate transaminase(gene name synonym)|uniprotkb:DVU_1029(locus name)|uniprotkb:hisC(gene name)|psi-mi:hisC(display_short) psi-mi:q72bi4_desvh(display_long)|uniprotkb:DVU_1652(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068788|imex:IM-22740-210 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001917(Aminotransferase, class-II, pyridoxal-phosphate binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR005861(Histidinol-phosphate aminotransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_010250.1|refseq:WP_010938328.1|ensemblbacteria:AAS95509(transcript)|ensemblbacteria:DVU_1029(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0004400"(histidinol-phosphate transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794526(identity) interpro:IPR001310("Histidine triad (HIT) protein")|interpro:IPR011146(Histidine triad-like motif)|refseq:YP_010870.1|refseq:WP_010938941.1|ensemblbacteria:AAS96129(transcript)|ensemblbacteria:DVU_1652(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003824"(catalytic activity)|interpro:IPR036265|interpro:IPR039383|entrezgene/locuslink:2795923(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:H14oWaNYwas/HBMZFA+aT/uTER4882 rogid:HTnyryDrYOSFOU4rs8sDMPkeXqE882 intact-crc:D976BE12EFBBDBBF|rigid:VNi6bv7wCuyGBNJVr6dhSAq7K5Y false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BF9 uniprotkb:Q3V892 intact:EBI-10068771|ensemblbacteria:AAS96154 intact:EBI-10065060|ensemblbacteria:AAS95854 psi-mi:tpis_desvh(display_long)|uniprotkb:Triose-phosphate isomerase(gene name synonym)|uniprotkb:DVU_1677(locus name)|uniprotkb:tpiA(gene name)|psi-mi:tpiA(display_short) psi-mi:q3v892_desvh(display_long)|uniprotkb:DVU_1376(locus name)|uniprotkb:ilvB-2(gene name)|psi-mi:ilvB-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068775|imex:IM-22740-209 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000652(Triosephosphate isomerase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020861|interpro:IPR022896|refseq:YP_010895.1|refseq:WP_010938966.1|ensemblbacteria:AAS96154(transcript)|ensemblbacteria:DVU_1677(gene)|go:"GO:0004807"(triose-phosphate isomerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|interpro:IPR035990|entrezgene/locuslink:2794905(identity) refseq:WP_010938671.1|interpro:IPR000399(TPP-binding enzymes, conserved site)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR012000(Thiamine pyrophosphate enzyme, central region)|interpro:IPR012001(Thiamine pyrophosphate enzyme, N-terminal TPP binding region)|interpro:IPR012846(Acetolactate synthase, large subunit, biosynthetic)|interpro:IPR029035|interpro:IPR029061|refseq:YP_010595.1|ensemblbacteria:AAS95854(transcript)|ensemblbacteria:DVU_1376(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR039368|entrezgene/locuslink:2793509(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:VrC0riNuKTTJq5PMjJty4QtwPqI882 rogid:jWGIJ+r0YmbjGCCXIdRHBctcW5g882 intact-crc:5E0073B3D2B91FF7|rigid:EuUqt0jb7EEpnqYN/iPPVMaODf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BC6 uniprotkb:Q72BC7 intact:EBI-10068751|ensemblbacteria:AAS96187 intact:EBI-10068754|ensemblbacteria:AAS96186 psi-mi:q72bc6_desvh(display_long)|uniprotkb:DVU_1710(locus name) psi-mi:q72bc7_desvh(display_long)|uniprotkb:DVU_1709(locus name)|uniprotkb:hsdM(gene name)|psi-mi:hsdM(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068758|imex:IM-22740-208 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938998.1|refseq:YP_010928.1|ensemblbacteria:AAS96187(transcript)|ensemblbacteria:DVU_1710(gene)|entrezgene/locuslink:2795834(identity) interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR004546(Restriction endonuclease, type I, EcoRI, M subunit)|interpro:IPR022749|interpro:IPR029063|refseq:YP_010927.1|refseq:WP_010938997.1|ensemblbacteria:AAS96186(transcript)|ensemblbacteria:DVU_1709(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR038333|entrezgene/locuslink:2795833(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:od0cQeH/EaUG/9s0RI9fpVokjnY882 rogid:NGMktmiB14E/aGfrHmCpejdJwWs882 intact-crc:4A5F27E3A1D54BEB|rigid:4ugmTkfx69y0zpUEFyYTagKamNU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BM1 uniprotkb:Q72BM2 intact:EBI-10068869|ensemblbacteria:AAS96092 intact:EBI-10068872|ensemblbacteria:AAS96091 psi-mi:q72bm1_desvh(display_long)|uniprotkb:DVU_1614(locus name) psi-mi:q72bm2_desvh(display_long)|uniprotkb:DVU_1613(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068866|imex:IM-22740-214 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|refseq:YP_010833.1|refseq:WP_010938905.1|ensemblbacteria:AAS96092(transcript)|ensemblbacteria:DVU_1614(gene)|entrezgene/locuslink:2796067(identity) interpro:IPR023753|ensemblbacteria:AAS96091(transcript)|ensemblbacteria:DVU_1613(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036188|entrezgene/locuslink:2796066(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.86" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:UHe+wbwxjBkpcf7Ie1lNUtmH54M882 rogid:vlPLvBXh+vLx/zSeuoZh0pbwRZ0882 intact-crc:48A20113786864D6|rigid:azXOYBprCwUe7n6MDk4U6TC0kYQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BK3 uniprotkb:Q72AB4 intact:EBI-10068824|ensemblbacteria:AAS96110 intact:EBI-10068827|ensemblbacteria:AAS96556 psi-mi:q72bk3_desvh(display_long)|uniprotkb:DVU_1632(locus name) psi-mi:q72ab4_desvh(display_long)|uniprotkb:DVU_2083(locus name)|uniprotkb:relA(gene name)|psi-mi:relA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068821|imex:IM-22740-212 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033887|interpro:IPR004701(Phosphotransferase system, fructose subfamily IIA component)|refseq:YP_010851.1|refseq:WP_010938923.1|ensemblbacteria:AAS96110(transcript)|ensemblbacteria:DVU_1632(gene)|go:"GO:0009401"(phosphoenolpyruvate-dependent sugar phosphotransferase system)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016301"(kinase activity)|interpro:IPR036662|entrezgene/locuslink:2796096(identity) interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR003607(Metal-dependent phosphohydrolase, HD region)|interpro:IPR004095(TGS)|interpro:IPR004811(RelA/SpoT protein)|interpro:IPR007685(RelA/SpoT)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR012676(TGS-like)|refseq:YP_011296.1|refseq:WP_010939360.1|interpro:IPR033655|ensemblbacteria:AAS96556(transcript)|ensemblbacteria:DVU_2083(gene)|go:"GO:0008728"(GTP diphosphokinase activity)|go:"GO:0015969"(guanosine tetraphosphate metabolic process)|go:"GO:0016301"(kinase activity)|interpro:IPR006674(Metal-dependent phosphohydrolase, HD region, subdomain)|interpro:IPR043519|entrezgene/locuslink:2793537(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:eMh4k8bYuQ63AkCL3SZvbR9jeuc882 rogid:DKIycRAmTsa5/Ph5SA7817PgPFQ882 intact-crc:4B5670F440AAEED7|rigid:1EW155EnkNaDMah4DbDTOzijoy0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BK7 uniprotkb:Q727C6 intact:EBI-10066288|ensemblbacteria:AAS96106 intact:EBI-10065699|ensemblbacteria:AAS97401 psi-mi:q72bk7_desvh(display_long)|uniprotkb:DVU_1628(locus name)|uniprotkb:rpoN(gene name)|psi-mi:rpoN(display_short) psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068841|imex:IM-22740-213 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038709|interpro:IPR000394(RNA polymerase sigma factor 54)|interpro:IPR007046(RNA polymerase sigma factor 54, core-binding)|interpro:IPR007634(RNA polymerase sigma factor 54, DNA-binding)|refseq:YP_010847.1|refseq:WP_010938919.1|ensemblbacteria:AAS96106(transcript)|ensemblbacteria:DVU_1628(gene)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0016987"(sigma factor activity)|entrezgene/locuslink:2796092(identity) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.48" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Hsh94f2qyUMd9e7D+NRWbRML/uo882 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 intact-crc:391004E8E278202D|rigid:08cDlPzVBWvBHWfx63zrZiazmFU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BK7 uniprotkb:Q727C7 intact:EBI-10066288|ensemblbacteria:AAS96106 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q72bk7_desvh(display_long)|uniprotkb:DVU_1628(locus name)|uniprotkb:rpoN(gene name)|psi-mi:rpoN(display_short) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068841|imex:IM-22740-213 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038709|interpro:IPR000394(RNA polymerase sigma factor 54)|interpro:IPR007046(RNA polymerase sigma factor 54, core-binding)|interpro:IPR007634(RNA polymerase sigma factor 54, DNA-binding)|refseq:YP_010847.1|refseq:WP_010938919.1|ensemblbacteria:AAS96106(transcript)|ensemblbacteria:DVU_1628(gene)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0016987"(sigma factor activity)|entrezgene/locuslink:2796092(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.29" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Hsh94f2qyUMd9e7D+NRWbRML/uo882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:391004E8E278202D|rigid:08cDlPzVBWvBHWfx63zrZiazmFU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BK7 uniprotkb:Q72CF4 intact:EBI-10066288|ensemblbacteria:AAS96106 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:q72bk7_desvh(display_long)|uniprotkb:DVU_1628(locus name)|uniprotkb:rpoN(gene name)|psi-mi:rpoN(display_short) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068841|imex:IM-22740-213 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038709|interpro:IPR000394(RNA polymerase sigma factor 54)|interpro:IPR007046(RNA polymerase sigma factor 54, core-binding)|interpro:IPR007634(RNA polymerase sigma factor 54, DNA-binding)|refseq:YP_010847.1|refseq:WP_010938919.1|ensemblbacteria:AAS96106(transcript)|ensemblbacteria:DVU_1628(gene)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0016987"(sigma factor activity)|entrezgene/locuslink:2796092(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Hsh94f2qyUMd9e7D+NRWbRML/uo882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:391004E8E278202D|rigid:08cDlPzVBWvBHWfx63zrZiazmFU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BK7 uniprotkb:Q725M7 intact:EBI-10066288|ensemblbacteria:AAS96106 intact:EBI-10066303|ensemblbacteria:AAS97712 psi-mi:q72bk7_desvh(display_long)|uniprotkb:DVU_1628(locus name)|uniprotkb:rpoN(gene name)|psi-mi:rpoN(display_short) psi-mi:rpoz_desvh(display_long)|uniprotkb:RNA polymerase omega subunit(gene name synonym)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:DVU_3242(locus name)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068841|imex:IM-22740-213 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038709|interpro:IPR000394(RNA polymerase sigma factor 54)|interpro:IPR007046(RNA polymerase sigma factor 54, core-binding)|interpro:IPR007634(RNA polymerase sigma factor 54, DNA-binding)|refseq:YP_010847.1|refseq:WP_010938919.1|ensemblbacteria:AAS96106(transcript)|ensemblbacteria:DVU_1628(gene)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0016987"(sigma factor activity)|entrezgene/locuslink:2796092(identity) interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|refseq:YP_012452.1|refseq:WP_010940500.1|ensemblbacteria:AAS97712(transcript)|ensemblbacteria:DVU_3242(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR036161|entrezgene/locuslink:2793892(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.97" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Hsh94f2qyUMd9e7D+NRWbRML/uo882 rogid:O6sSrgt2kCmVvFu06S0wwA/xCy4882 intact-crc:391004E8E278202D|rigid:08cDlPzVBWvBHWfx63zrZiazmFU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727W9 uniprotkb:Q72BM3 intact:EBI-10068901|ensemblbacteria:AAS97207 intact:EBI-10068066|ensemblbacteria:AAS96090 psi-mi:q727w9_desvh(display_long)|uniprotkb:Phenylacetyl-CoA ligase(gene name synonym)|uniprotkb:DVU_2735(locus name)|uniprotkb:paaK-3(gene name)|psi-mi:paaK-3(display_short) psi-mi:q72bm3_desvh(display_long)|uniprotkb:DVU_1612(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068898|imex:IM-22740-216 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011880(Phenylacetate-CoA ligase)|interpro:IPR028154|refseq:YP_011947.1|refseq:WP_010940001.1|ensemblbacteria:AAS97207(transcript)|ensemblbacteria:DVU_2735(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0010124"(phenylacetate catabolic process)|go:"GO:0047475"(phenylacetate-CoA ligase activity)|entrezgene/locuslink:2795937(identity) interpro:IPR002912(Amino acid-binding ACT)|refseq:YP_010831.1|refseq:WP_010938903.1|ensemblbacteria:AAS96090(transcript)|ensemblbacteria:DVU_1612(gene)|entrezgene/locuslink:2796065(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.88" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ZYnoclagAsUMSmwkiKtKTHeSsBo882 rogid:cUPUKCp7Aoyi1bdGib7iFptt9S0882 intact-crc:493228666CD9819F|rigid:GsIDkUWTLp9tjs/umhjAkzVMPjA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62035 uniprotkb:Q72BM5 intact:EBI-10064948|ensemblbacteria:AAS96732 intact:EBI-10064938|ensemblbacteria:AAS96088 psi-mi:y2259_desvh(display_long)|uniprotkb:DVU_2259(locus name) psi-mi:q72bm5_desvh(display_long)|uniprotkb:"NAD(+) synthase [glutamine-hydrolyzing]"(gene name synonym)|uniprotkb:DVU_1610(locus name)|uniprotkb:nadE(gene name)|psi-mi:nadE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068915|imex:IM-22740-217 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|refseq:YP_011472.1|refseq:WP_010939534.1|ensemblbacteria:AAS96732(transcript)|ensemblbacteria:DVU_2259(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|entrezgene/locuslink:2794081(identity) interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|interpro:IPR003694(NAD+ synthase)|interpro:IPR014445("Glutamine-dependent NAD(+) synthetase, GAT region")|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR022310|refseq:YP_010829.1|refseq:WP_010938901.1|ensemblbacteria:AAS96088(transcript)|ensemblbacteria:DVU_1610(gene)|go:"GO:0003952"("NAD+ synthase (glutamine-hydrolyzing) activity")|go:"GO:0004359"(glutaminase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008795"(NAD+ synthase activity)|go:"GO:0009435"(NAD biosynthetic process)|interpro:IPR036526|entrezgene/locuslink:2796063(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:vwq31bMVKWxbxjQkLoWk21tInLI882 rogid:k4s4BfpX6SHtSSy2NSA4EAO8e6w882 intact-crc:9541B08084BEE566|rigid:HMjXHW1ogO2lzKGWFS0pos53MTo false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BP2 uniprotkb:Q72BU5 intact:EBI-10068941|ensemblbacteria:AAS96070 intact:EBI-10066693|ensemblbacteria:AAS96017 psi-mi:q72bp2_desvh(display_long)|uniprotkb:DVU_1592(locus name) psi-mi:q72bu5_desvh(display_long)|uniprotkb:DVU_1539(locus name)|uniprotkb:glpX(gene name)|psi-mi:glpX(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068944|imex:IM-22740-219 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938883.1|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_010811.1|ensemblbacteria:AAS96070(transcript)|ensemblbacteria:DVU_1592(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016020"(membrane)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2796028(identity) interpro:IPR004464(GlpX)|refseq:YP_010758.1|refseq:WP_010938831.1|ensemblbacteria:AAS96017(transcript)|ensemblbacteria:DVU_1539(gene)|go:"GO:0006071"(glycerol metabolic process)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2793689(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.94" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:wGtDBExRx6uFrLl4cJzjt4X6DLU882 rogid:CT97gy9emJCEZP/QFHye+xB6Ccs882 intact-crc:3F3E556E3796AFD3|rigid:nHiioZWSlQZI2kQakLi416PzpD0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BP2 uniprotkb:Q728M4 intact:EBI-10068941|ensemblbacteria:AAS96070 intact:EBI-10068947|ensemblbacteria:AAS97051 psi-mi:q72bp2_desvh(display_long)|uniprotkb:DVU_1592(locus name) psi-mi:q728m4_desvh(display_long)|uniprotkb:DVU_2579(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068944|imex:IM-22740-219 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938883.1|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_010811.1|ensemblbacteria:AAS96070(transcript)|ensemblbacteria:DVU_1592(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016020"(membrane)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2796028(identity) interpro:IPR001440(Tetratricopeptide TPR-1)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|refseq:YP_011791.1|refseq:WP_010939849.1|ensemblbacteria:AAS97051(transcript)|ensemblbacteria:DVU_2579(gene)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2794992(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.67" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:wGtDBExRx6uFrLl4cJzjt4X6DLU882 rogid:QSSZDEkxJo025URPXR4wg0RQX6Y882 intact-crc:3F3E556E3796AFD3|rigid:nHiioZWSlQZI2kQakLi416PzpD0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BP2 uniprotkb:Q728G0 intact:EBI-10068941|ensemblbacteria:AAS96070 intact:EBI-10066697|ensemblbacteria:AAS97115 psi-mi:q72bp2_desvh(display_long)|uniprotkb:DVU_1592(locus name) psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068944|imex:IM-22740-219 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938883.1|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_010811.1|ensemblbacteria:AAS96070(transcript)|ensemblbacteria:DVU_1592(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016020"(membrane)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2796028(identity) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.82" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:wGtDBExRx6uFrLl4cJzjt4X6DLU882 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 intact-crc:3F3E556E3796AFD3|rigid:nHiioZWSlQZI2kQakLi416PzpD0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BR4 uniprotkb:Q72BR5 intact:EBI-10068994|ensemblbacteria:AAS96048 intact:EBI-10068990|ensemblbacteria:AAS96047 psi-mi:q72br4_desvh(display_long)|uniprotkb:DVU_1570(locus name)|uniprotkb:porB(gene name)|psi-mi:porB(display_short) psi-mi:q72br5_desvh(display_long)|uniprotkb:DVU_1569(locus name)|uniprotkb:porA(gene name)|psi-mi:porA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069008|imex:IM-22740-222 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR011896("2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate")|interpro:IPR029061|refseq:YP_010789.1|refseq:WP_010938861.1|interpro:IPR032686|ensemblbacteria:AAS96048(transcript)|ensemblbacteria:DVU_1570(gene)|go:"GO:0019164"(pyruvate synthase activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2793461(identity) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR019752|interpro:IPR022367|interpro:IPR029061|refseq:YP_010788.1|refseq:WP_010938860.1|ensemblbacteria:AAS96047(transcript)|ensemblbacteria:DVU_1569(gene)|go:"GO:0019164"(pyruvate synthase activity)|entrezgene/locuslink:2793460(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:KPsJE1oLOivI3xVRLE8dBiQIkvw882 rogid:NiPqIE+kT8bgxCOoK6KTDryJgXI882 intact-crc:4C5FB5B75201F20F|rigid:3vcI/cUAmI7csHRmPU31JgoJFR8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BP9 uniprotkb:Q72DM1 intact:EBI-10068968|ensemblbacteria:AAS96063 intact:EBI-10068971|ensemblbacteria:AAS95388 psi-mi:q72bp9_desvh(display_long)|uniprotkb:Methionine synthase(gene name synonym)|uniprotkb:DVU_1585(locus name) psi-mi:q72dm1_desvh(display_long)|uniprotkb:DVU_0908(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068974|imex:IM-22740-220 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000489(Dihydropteroate synthase, DHPS)|interpro:IPR003726(Homocysteine S-methyltransferase)|interpro:IPR003759("Methionine synthase, cobalamin (vitamin B12)-binding module, cap")|interpro:IPR006158("Cobalamin (vitamin B12)-binding")|interpro:IPR011005(Dihydropteroate synthase-like)|interpro:IPR017215(5-methyltetrahydrofolate-homocysteine S-methyltransferase, bacterial)|refseq:YP_010804.1|refseq:WP_010938876.1|ensemblbacteria:AAS96063(transcript)|ensemblbacteria:DVU_1585(gene)|go:"GO:0008705"(methionine synthase activity)|go:"GO:0031419"(cobalamin binding)|go:"GO:0032259"(methylation)|go:"GO:0042558"(pteridine-containing compound metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036589|interpro:IPR036594|interpro:IPR036724|entrezgene/locuslink:2796021(identity) interpro:IPR001041(Ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR027980|refseq:YP_010129.1|ensemblbacteria:AAS95388(transcript)|ensemblbacteria:DVU_0908(gene)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036010|interpro:IPR042259|interpro:IPR041414|entrezgene/locuslink:2795418(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.48" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:/Hj51SlLLA9W+1EW7vJXTGGu6AQ882 rogid:Tp8ez6ShWuEZHCH7KiaghKSZ4PQ882 intact-crc:B7BCD5115AD2DA40|rigid:tIgnT7z64QVd3uBwi4LH5UrrN7k false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BR5 uniprotkb:Q72BR4 intact:EBI-10068990|ensemblbacteria:AAS96047 intact:EBI-10068994|ensemblbacteria:AAS96048 psi-mi:q72br5_desvh(display_long)|uniprotkb:DVU_1569(locus name)|uniprotkb:porA(gene name)|psi-mi:porA(display_short) psi-mi:q72br4_desvh(display_long)|uniprotkb:DVU_1570(locus name)|uniprotkb:porB(gene name)|psi-mi:porB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068987|imex:IM-22740-221 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR019752|interpro:IPR022367|interpro:IPR029061|refseq:YP_010788.1|refseq:WP_010938860.1|ensemblbacteria:AAS96047(transcript)|ensemblbacteria:DVU_1569(gene)|go:"GO:0019164"(pyruvate synthase activity)|entrezgene/locuslink:2793460(identity) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR011896("2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate")|interpro:IPR029061|refseq:YP_010789.1|refseq:WP_010938861.1|interpro:IPR032686|ensemblbacteria:AAS96048(transcript)|ensemblbacteria:DVU_1570(gene)|go:"GO:0019164"(pyruvate synthase activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2793461(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:NiPqIE+kT8bgxCOoK6KTDryJgXI882 rogid:KPsJE1oLOivI3xVRLE8dBiQIkvw882 intact-crc:51027A6ADF804A11|rigid:3vcI/cUAmI7csHRmPU31JgoJFR8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CK0 uniprotkb:Q72BU7 intact:EBI-10069053|ensemblbacteria:AAS95761 intact:EBI-10069050|ensemblbacteria:AAS96015 psi-mi:q72ck0_desvh(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:DVU_1283(locus name)|uniprotkb:galU(gene name)|psi-mi:galU(display_short) psi-mi:q72bu7_desvh(display_long)|uniprotkb:DVU_1537(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069047|imex:IM-22740-225 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR029044|refseq:YP_010502.1|ensemblbacteria:AAS95761(transcript)|ensemblbacteria:DVU_1283(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process)|entrezgene/locuslink:2794349(identity) interpro:IPR005632("Outer membrane chaperone Skp (OmpH)")|interpro:IPR024930|refseq:YP_010756.1|refseq:WP_010938829.1|ensemblbacteria:AAS96015(transcript)|ensemblbacteria:DVU_1537(gene)|go:"GO:0051082"(unfolded protein binding)|entrezgene/locuslink:2793822(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.47" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:d6iZYQ9JPNw37P78x10YDxMTefo882 rogid:Z69I+QHw7xB9zNaq2crNRD2DdMQ882 intact-crc:DA178CF865FBED8E|rigid:vHIwcz7GeIp1WxK9rkvBRjHR+/k false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728G0 uniprotkb:Q72BU5 intact:EBI-10066697|ensemblbacteria:AAS97115 intact:EBI-10066693|ensemblbacteria:AAS96017 psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:q72bu5_desvh(display_long)|uniprotkb:DVU_1539(locus name)|uniprotkb:glpX(gene name)|psi-mi:glpX(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069021|imex:IM-22740-223 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) interpro:IPR004464(GlpX)|refseq:YP_010758.1|refseq:WP_010938831.1|ensemblbacteria:AAS96017(transcript)|ensemblbacteria:DVU_1539(gene)|go:"GO:0006071"(glycerol metabolic process)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2793689(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 rogid:CT97gy9emJCEZP/QFHye+xB6Ccs882 intact-crc:C69AFCBC95246932|rigid:3++j5J2hjYRcFsStPyWAltVEYeU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C09 uniprotkb:Q72A57 intact:EBI-10069074|ensemblbacteria:AAS95953 intact:EBI-10069070|ensemblbacteria:AAS96613 psi-mi:q72c09_desvh(display_long)|uniprotkb:DVU_1475(locus name) psi-mi:kthy_desvh(display_long)|uniprotkb:dTMP kinase(gene name synonym)|uniprotkb:DVU_2140(locus name)|uniprotkb:tmk(gene name)|psi-mi:tmk(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069067|imex:IM-22740-226 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR026022|interpro:IPR028366|refseq:YP_010694.1|refseq:WP_010938768.1|ensemblbacteria:AAS95953(transcript)|ensemblbacteria:DVU_1475(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078|entrezgene/locuslink:2794144(identity) interpro:IPR018094|interpro:IPR018095|interpro:IPR027417|refseq:YP_011353.1|refseq:WP_010939417.1|ensemblbacteria:AAS96613(transcript)|ensemblbacteria:DVU_2140(gene)|go:"GO:0004798"(thymidylate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006233"(dTDP biosynthetic process)|go:"GO:0006235"(dTTP biosynthetic process)|interpro:IPR039430|entrezgene/locuslink:2794219(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.96" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:rUX9vAQegVimSdnG0jHGTjgH0Kw882 rogid:h/HaVwefbDuBbQGwEFm9KY0Y3m4882 intact-crc:3D86CBB4B5762CB5|rigid:vs9yZwZKUlftzdTe7Taqz/uUrws false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C09 uniprotkb:Q72D45 intact:EBI-10069074|ensemblbacteria:AAS95953 intact:EBI-10069077|ensemblbacteria:AAS95565 psi-mi:q72c09_desvh(display_long)|uniprotkb:DVU_1475(locus name) psi-mi:q72d45_desvh(display_long)|uniprotkb:DVU_1085(locus name)|uniprotkb:phoU(gene name)|psi-mi:phoU(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069067|imex:IM-22740-226 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR026022|interpro:IPR028366|refseq:YP_010694.1|refseq:WP_010938768.1|ensemblbacteria:AAS95953(transcript)|ensemblbacteria:DVU_1475(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078|entrezgene/locuslink:2794144(identity) interpro:IPR026022|interpro:IPR028366|refseq:YP_010306.1|refseq:WP_010938384.1|ensemblbacteria:AAS95565(transcript)|ensemblbacteria:DVU_1085(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078|entrezgene/locuslink:2794463(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.67" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:rUX9vAQegVimSdnG0jHGTjgH0Kw882 rogid:8bRa7Ad8xK+IgqVObyH5pX3mm7Q882 intact-crc:3D86CBB4B5762CB5|rigid:vs9yZwZKUlftzdTe7Taqz/uUrws false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C62 uniprotkb:Q72C18 intact:EBI-10069095|ensemblbacteria:AAS95900 intact:EBI-10069101|ensemblbacteria:AAS95944 psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:argb_desvh(display_long)|uniprotkb:N-acetyl-L-glutamate 5-phosphotransferase(gene name synonym)|uniprotkb:NAG kinase(gene name synonym)|uniprotkb:DVU_1466(locus name)|uniprotkb:argB(gene name)|psi-mi:argB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069098|imex:IM-22740-227 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) interpro:IPR041727|interpro:IPR001048(Aspartate/glutamate/uridylate kinase)|interpro:IPR004662(Acetylglutamate kinase)|refseq:YP_010685.1|refseq:WP_010938759.1|ensemblbacteria:AAS95944(transcript)|ensemblbacteria:DVU_1466(gene)|go:"GO:0003991"(acetylglutamate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0042450"(arginine biosynthetic process via ornithine)|interpro:IPR036393|interpro:IPR037528|entrezgene/locuslink:2794884(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.96" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 rogid:WaDuj48PU9x4seAA+Qxhg32Bfpc882 intact-crc:C75E0F456D566C30|rigid:hKLU0QCEhhetxbdpWf9USE61zcg false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q729F0 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069167|imex:IM-22740-231 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.27" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:A347D7C34DAC3FF9|rigid:TLsfewpETzjAl+Sgb8QQXGzT9sE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q72CF4 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069167|imex:IM-22740-231 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.33" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:A347D7C34DAC3FF9|rigid:TLsfewpETzjAl+Sgb8QQXGzT9sE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q726E7 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065191|ensemblbacteria:AAS97676 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069167|imex:IM-22740-231 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 intact-crc:A347D7C34DAC3FF9|rigid:TLsfewpETzjAl+Sgb8QQXGzT9sE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q72A94 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065907|ensemblbacteria:AAS96576 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q72a94_desvh(display_long)|uniprotkb:DVU_2103(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069167|imex:IM-22740-231 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011316.1|refseq:WP_010939380.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|ensemblbacteria:AAS96576(transcript)|ensemblbacteria:DVU_2103(gene)|entrezgene/locuslink:2795479(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.35" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:bIlVXxSJZO2d9vZ2o9xs0d/Wo/Q882 intact-crc:A347D7C34DAC3FF9|rigid:TLsfewpETzjAl+Sgb8QQXGzT9sE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C19 uniprotkb:Q72F07 intact:EBI-10069131|ensemblbacteria:AAS95943 intact:EBI-10069134|ensemblbacteria:AAS94894 psi-mi:q72c19_desvh(display_long)|uniprotkb:DVU_1465(locus name) psi-mi:q72f07_desvh(display_long)|uniprotkb:DVU_0411(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069137|imex:IM-22740-229 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024542|ensemblbacteria:AAS95943(transcript)|ensemblbacteria:DVU_1465(gene)|entrezgene/locuslink:2794883(identity) interpro:IPR002201(Glycosyl transferase, family 9)|refseq:YP_009635.1|refseq:WP_010937718.1|ensemblbacteria:AAS94894(transcript)|ensemblbacteria:DVU_0411(gene)|go:"GO:0016757"(glycosyltransferase activity)|entrezgene/locuslink:2793712(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jFXTIvtFwRQLU8ge0uuMaAmRYWs882 rogid:ROZY+6+41AsAkCQGGPndYqv/J7c882 intact-crc:1CD0D44F50A51D84|rigid:U0lOzQ6eRf41VXR/TW5iA9c4jh0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C19 uniprotkb:Q72C20 intact:EBI-10069131|ensemblbacteria:AAS95943 intact:EBI-10069128|ensemblbacteria:AAS95942 psi-mi:q72c19_desvh(display_long)|uniprotkb:DVU_1465(locus name) psi-mi:q72c20_desvh(display_long)|uniprotkb:DVU_1464(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069137|imex:IM-22740-229 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024542|ensemblbacteria:AAS95943(transcript)|ensemblbacteria:DVU_1465(gene)|entrezgene/locuslink:2794883(identity) interpro:IPR002201(Glycosyl transferase, family 9)|refseq:YP_010683.1|refseq:WP_010938757.1|ensemblbacteria:AAS95942(transcript)|ensemblbacteria:DVU_1464(gene)|go:"GO:0016757"(glycosyltransferase activity)|entrezgene/locuslink:2794882(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.30" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jFXTIvtFwRQLU8ge0uuMaAmRYWs882 rogid:eemKulukswF4ohayuPdhIq8wrGQ882 intact-crc:1CD0D44F50A51D84|rigid:U0lOzQ6eRf41VXR/TW5iA9c4jh0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C30 uniprotkb:Q72DU3 intact:EBI-10069217|ensemblbacteria:AAS95932 intact:EBI-10069213|ensemblbacteria:AAS95316 psi-mi:ispdf_desvh(display_long)|uniprotkb:ispD(gene name synonym)|uniprotkb:DVU_1454(locus name)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short) psi-mi:trmd_desvh(display_long)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym)|uniprotkb:DVU_0836(locus name)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069221|imex:IM-22740-233 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|interpro:IPR029044|refseq:YP_010673.1|refseq:WP_010938747.1|ensemblbacteria:AAS95932(transcript)|ensemblbacteria:DVU_1454(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|interpro:IPR034683|interpro:IPR036571|entrezgene/locuslink:2794820(identity) interpro:IPR023148|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR019230|interpro:IPR029026|interpro:IPR029028|refseq:YP_010057.1|refseq:WP_010938137.1|ensemblbacteria:AAS95316(transcript)|ensemblbacteria:DVU_0836(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|entrezgene/locuslink:2794848(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:09vx9flKicV2MNGXlhhB263lymE882 rogid:JzxZzMGyF2NhZkiUkc1jEB/A1Ck882 intact-crc:A62E2B3B0BBC236D|rigid:5NdV2OL8AngnRCSBAwd0FpKQhWk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C30 uniprotkb:Q72D36 intact:EBI-10069217|ensemblbacteria:AAS95932 intact:EBI-10067699|ensemblbacteria:AAS95574 psi-mi:ispdf_desvh(display_long)|uniprotkb:ispD(gene name synonym)|uniprotkb:DVU_1454(locus name)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short) psi-mi:arly_desvh(display_long)|uniprotkb:Arginosuccinase(gene name synonym)|uniprotkb:DVU_1094(locus name)|uniprotkb:argH(gene name)|psi-mi:argH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069221|imex:IM-22740-233 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|interpro:IPR029044|refseq:YP_010673.1|refseq:WP_010938747.1|ensemblbacteria:AAS95932(transcript)|ensemblbacteria:DVU_1454(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|interpro:IPR034683|interpro:IPR036571|entrezgene/locuslink:2794820(identity) interpro:IPR000362(Fumarate lyase)|interpro:IPR008948(L-Aspartase-like)|interpro:IPR009049(Argininosuccinate lyase)|interpro:IPR020557|interpro:IPR022761|interpro:IPR024083|interpro:IPR029419|refseq:YP_010315.1|refseq:WP_010938393.1|ensemblbacteria:AAS95574(transcript)|ensemblbacteria:DVU_1094(gene)|go:"GO:0004056"(argininosuccinate lyase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0042450"(arginine biosynthetic process via ornithine)|entrezgene/locuslink:2794073(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.59" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:09vx9flKicV2MNGXlhhB263lymE882 rogid:0xiCHW8HKPNzkOA0ytfrjBwB2n0882 intact-crc:A62E2B3B0BBC236D|rigid:5NdV2OL8AngnRCSBAwd0FpKQhWk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C36 uniprotkb:Q725K1 intact:EBI-10069258|ensemblbacteria:AAS95926 intact:EBI-10069261|ensemblbacteria:AAS97642 psi-mi:q72c36_desvh(display_long)|uniprotkb:DVU_1448(locus name) psi-mi:q725k1_desvh(display_long)|uniprotkb:DVU_3172(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069255|imex:IM-22740-235 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005646(Protein of unknown function DUF342)|refseq:YP_010667.1|refseq:WP_010938741.1|ensemblbacteria:AAS95926(transcript)|ensemblbacteria:DVU_1448(gene)|entrezgene/locuslink:2794575(identity) refseq:YP_012382.1|ensemblbacteria:AAS97642(transcript)|ensemblbacteria:DVU_3172(gene)|entrezgene/locuslink:2795877(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.52" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:gDI/xIyqhiES5rob2crd/ZufkzM882 rogid:G2KTBNQRG4Lwb95IqWUJv2CqVWA882 intact-crc:1CD12AAFE8E74C38|rigid:tN90/G9GI9PzBjsadEbfzPNG83Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C60 uniprotkb:Q72C59 intact:EBI-10069287|ensemblbacteria:AAS95902 intact:EBI-10069291|ensemblbacteria:AAS95903 psi-mi:q72c60_desvh(display_long)|uniprotkb:DVU_1424(locus name)|uniprotkb:gcvPB(gene name)|psi-mi:gcvPB(display_short) psi-mi:gcspa_desvh(display_long)|uniprotkb:Glycine cleavage system P-protein subunit 1(gene name synonym)|uniprotkb:Glycine decarboxylase subunit 1(gene name synonym)|uniprotkb:"Glycine dehydrogenase (aminomethyl-transferring) subunit 1"(gene name synonym)|uniprotkb:DVU_1425(locus name)|uniprotkb:gcvPA(gene name)|psi-mi:gcvPA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069295|imex:IM-22740-237 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020581|refseq:YP_010643.1|refseq:WP_010938717.1|ensemblbacteria:AAS95902(transcript)|ensemblbacteria:DVU_1424(gene)|go:"GO:0004375"("glycine dehydrogenase (decarboxylating) activity")|go:"GO:0006546"(glycine catabolic process)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|entrezgene/locuslink:2794685(identity) interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020581|interpro:IPR023010|refseq:YP_010644.1|refseq:WP_010938718.1|ensemblbacteria:AAS95903(transcript)|ensemblbacteria:DVU_1425(gene)|go:"GO:0004375"("glycine dehydrogenase (decarboxylating) activity")|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019464"(glycine decarboxylation via glycine cleavage system)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|entrezgene/locuslink:2794686(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:tXkD34WrNn4zSKZodVuNrlw8S6E882 rogid:NN8JwphJrH9Gj80Pv1v9BaEc82Y882 intact-crc:5496A9B9D0F1A31C|rigid:gBo3Vn7mNy47X489yyt4AlFfHwI false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C80 uniprotkb:Q72DI3 intact:EBI-10069340|ensemblbacteria:AAS95882 intact:EBI-10069337|ensemblbacteria:AAS95426 psi-mi:q72c80_desvh(display_long)|uniprotkb:DVU_1404(locus name) psi-mi:q72di3_desvh(display_long)|uniprotkb:DVU_0946(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069334|imex:IM-22740-240 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR016431(Pyruvate-formate lyase-activating enzyme, predicted)|interpro:IPR027596|refseq:YP_010623.1|ensemblbacteria:AAS95882(transcript)|ensemblbacteria:DVU_1404(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR034457|entrezgene/locuslink:2794656(identity) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_010167.1|refseq:WP_010938245.1|ensemblbacteria:AAS95426(transcript)|ensemblbacteria:DVU_0946(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794590(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.53" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:YUeCiVOSmTWJhBWC9uJKGKncyP8882 rogid:FJt8RYD3poiEkHTx8ZkIJniRK4A882 intact-crc:EEE11E63D5C1B783|rigid:bs71fEaAtUQWfgmu2N5C/699KGQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C59 uniprotkb:Q72C60 intact:EBI-10069291|ensemblbacteria:AAS95903 intact:EBI-10069287|ensemblbacteria:AAS95902 psi-mi:gcspa_desvh(display_long)|uniprotkb:Glycine cleavage system P-protein subunit 1(gene name synonym)|uniprotkb:Glycine decarboxylase subunit 1(gene name synonym)|uniprotkb:"Glycine dehydrogenase (aminomethyl-transferring) subunit 1"(gene name synonym)|uniprotkb:DVU_1425(locus name)|uniprotkb:gcvPA(gene name)|psi-mi:gcvPA(display_short) psi-mi:q72c60_desvh(display_long)|uniprotkb:DVU_1424(locus name)|uniprotkb:gcvPB(gene name)|psi-mi:gcvPB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069321|imex:IM-22740-239 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020581|interpro:IPR023010|refseq:YP_010644.1|refseq:WP_010938718.1|ensemblbacteria:AAS95903(transcript)|ensemblbacteria:DVU_1425(gene)|go:"GO:0004375"("glycine dehydrogenase (decarboxylating) activity")|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019464"(glycine decarboxylation via glycine cleavage system)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|entrezgene/locuslink:2794686(identity) interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020581|refseq:YP_010643.1|refseq:WP_010938717.1|ensemblbacteria:AAS95902(transcript)|ensemblbacteria:DVU_1424(gene)|go:"GO:0004375"("glycine dehydrogenase (decarboxylating) activity")|go:"GO:0006546"(glycine catabolic process)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|entrezgene/locuslink:2794685(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:NN8JwphJrH9Gj80Pv1v9BaEc82Y882 rogid:tXkD34WrNn4zSKZodVuNrlw8S6E882 intact-crc:E6FA32772B47EB29|rigid:gBo3Vn7mNy47X489yyt4AlFfHwI false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C87 uniprotkb:Q72BF0 intact:EBI-10069359|ensemblbacteria:AAS95875 intact:EBI-10069353|ensemblbacteria:AAS96163 psi-mi:q72c87_desvh(display_long)|uniprotkb:DVU_1397(locus name)|uniprotkb:bfr(gene name)|psi-mi:bfr(display_short) psi-mi:q72bf0_desvh(display_long)|uniprotkb:DVU_1686(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069356|imex:IM-22740-241 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002024(Bacterioferritin)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_010616.1|refseq:WP_010938692.1|ensemblbacteria:AAS95875(transcript)|ensemblbacteria:DVU_1397(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0006826"(iron ion transport)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|entrezgene/locuslink:2794797(identity) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR008824(DNA helicase, Holliday junction RuvB type, N-terminal)|interpro:IPR008921(DNA polymerase III clamp loader subunit, C-terminal)|interpro:IPR021886|interpro:IPR027417|refseq:YP_010904.1|interpro:IPR032423|refseq:WP_010938975.1|ensemblbacteria:AAS96163(transcript)|ensemblbacteria:DVU_1686(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003677"(DNA binding)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0009378"(four-way junction helicase activity)|entrezgene/locuslink:2794914(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.61" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:/YEQxIIVEft2Xb4CEZccQMQlPoM882 rogid:Ztr2GDn8VxuIRhLODA0jfi/vW3Q882 intact-crc:08E9D2F2257E021F|rigid:w/AcxmSaM9T3/dCgeH50uMqOPJc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725N2 uniprotkb:Q72CB2 intact:EBI-10069417|ensemblbacteria:AAS97861 intact:EBI-10069421|ensemblbacteria:AAS95849 psi-mi:q725n2_desvh(display_long)|uniprotkb:DVU_3392(locus name)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short) psi-mi:q72cb2_desvh(display_long)|uniprotkb:DVU_1371(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069414|imex:IM-22740-244 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|refseq:YP_012601.1|refseq:WP_010940646.1|ensemblbacteria:AAS97861(transcript)|ensemblbacteria:DVU_3392(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0006542"(glutamine biosynthetic process)|interpro:IPR036651|entrezgene/locuslink:2796411(identity) interpro:IPR023198|interpro:IPR006439(HAD-superfamily hydrolase, subfamily IA, variant 1)|interpro:IPR023214|refseq:YP_010590.1|refseq:WP_010938666.1|ensemblbacteria:AAS95849(transcript)|ensemblbacteria:DVU_1371(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036412|interpro:IPR041492|entrezgene/locuslink:2793504(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:JUfX2e+Rr4oodTXJPIaNjmvWeOQ882 rogid:BFJR5J68zjwhbf1zBApWrMy2XeM882 intact-crc:501093A31ECAB2FD|rigid:2E2gdy2qu5cmEOeU3Upp/QXSs7k false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CA0 uniprotkb:Q727F3 intact:EBI-10069386|ensemblbacteria:AAS95862 intact:EBI-10066383|ensemblbacteria:AAS97374 psi-mi:q72ca0_desvh(display_long)|uniprotkb:DVU_1384(locus name)|uniprotkb:pyrR(gene name)|psi-mi:pyrR(display_short) psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069390|imex:IM-22740-243 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR023050|interpro:IPR029057|refseq:YP_010603.1|refseq:WP_010938679.1|ensemblbacteria:AAS95862(transcript)|ensemblbacteria:DVU_1384(gene)|go:"GO:0004845"(uracil phosphoribosyltransferase activity)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009116"(nucleoside metabolic process)|entrezgene/locuslink:2795125(identity) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|entrezgene/locuslink:2793932(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.49" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:51zB9j3d6COhAw2JbqKtWWvfdlw882 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 intact-crc:750851B5E381E346|rigid:UhrbjTkkO7Meb13uCIvgoJYi79Q false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CA0 uniprotkb:Q727F4 intact:EBI-10069386|ensemblbacteria:AAS95862 intact:EBI-10066379|ensemblbacteria:AAS97373 psi-mi:q72ca0_desvh(display_long)|uniprotkb:DVU_1384(locus name)|uniprotkb:pyrR(gene name)|psi-mi:pyrR(display_short) psi-mi:pyrb_desvh(display_long)|uniprotkb:Aspartate transcarbamylase(gene name synonym)|uniprotkb:DVU_2901(locus name)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069390|imex:IM-22740-243 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR023050|interpro:IPR029057|refseq:YP_010603.1|refseq:WP_010938679.1|ensemblbacteria:AAS95862(transcript)|ensemblbacteria:DVU_1384(gene)|go:"GO:0004845"(uracil phosphoribosyltransferase activity)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009116"(nucleoside metabolic process)|entrezgene/locuslink:2795125(identity) interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|refseq:YP_012113.1|refseq:WP_010940161.1|ensemblbacteria:AAS97373(transcript)|ensemblbacteria:DVU_2901(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR036901|entrezgene/locuslink:2793931(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.48" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:51zB9j3d6COhAw2JbqKtWWvfdlw882 rogid:W13RREVUawgRc7XxXkARSwTUTDA882 intact-crc:750851B5E381E346|rigid:UhrbjTkkO7Meb13uCIvgoJYi79Q false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CA0 uniprotkb:Q72DS2 intact:EBI-10069386|ensemblbacteria:AAS95862 intact:EBI-10069393|ensemblbacteria:AAS95337 psi-mi:q72ca0_desvh(display_long)|uniprotkb:DVU_1384(locus name)|uniprotkb:pyrR(gene name)|psi-mi:pyrR(display_short) psi-mi:q72ds2_desvh(display_long)|uniprotkb:DVU_0857(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069390|imex:IM-22740-243 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR023050|interpro:IPR029057|refseq:YP_010603.1|refseq:WP_010938679.1|ensemblbacteria:AAS95862(transcript)|ensemblbacteria:DVU_1384(gene)|go:"GO:0004845"(uracil phosphoribosyltransferase activity)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009116"(nucleoside metabolic process)|entrezgene/locuslink:2795125(identity) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR023885|refseq:YP_010078.1|interpro:IPR030894|refseq:WP_010938157.1|ensemblbacteria:AAS95337(transcript)|ensemblbacteria:DVU_0857(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034479|interpro:IPR017200(Coenzyme PQQ biosynthesis protein E)|entrezgene/locuslink:2794186(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.27" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:51zB9j3d6COhAw2JbqKtWWvfdlw882 rogid:g+y+xJ7Wd0gLKuQHBvSJDQ1tDow882 intact-crc:750851B5E381E346|rigid:UhrbjTkkO7Meb13uCIvgoJYi79Q false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB5 uniprotkb:Q72AZ0 intact:EBI-10068444|ensemblbacteria:AAS95846 intact:EBI-10068438|ensemblbacteria:AAS96326 psi-mi:q72cb5_desvh(display_long)|uniprotkb:DVU_1368(locus name) psi-mi:q72az0_desvh(display_long)|uniprotkb:DVU_1850(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069447|imex:IM-22740-246 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001763(Rhodanese-like)|interpro:IPR016156(FAD/NAD-linked reductase, dimerisation)|interpro:IPR023753|refseq:YP_010587.1|refseq:WP_010938663.1|ensemblbacteria:AAS95846(transcript)|ensemblbacteria:DVU_1368(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|interpro:IPR036873|entrezgene/locuslink:2795092(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|refseq:YP_011067.1|refseq:WP_010939136.1|ensemblbacteria:AAS96326(transcript)|ensemblbacteria:DVU_1850(gene)|entrezgene/locuslink:2795913(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.65" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zAfVANYX4Q79NnmesRRLpD8kUXA882 rogid:NtrIYgxoDaITCFYFa7oAoQ8NcQ8882 intact-crc:D8AB21A3176A12C7|rigid:rbbEk8Sse6ybY4GMLrxQqmBUIeE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB5 uniprotkb:Q72B50 intact:EBI-10068444|ensemblbacteria:AAS95846 intact:EBI-10067283|ensemblbacteria:AAS96265 psi-mi:q72cb5_desvh(display_long)|uniprotkb:DVU_1368(locus name) psi-mi:q72b50_desvh(display_long)|uniprotkb:Sigma-70(gene name synonym)|uniprotkb:DVU_1788(locus name)|uniprotkb:rpoD(gene name)|psi-mi:rpoD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069447|imex:IM-22740-246 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001763(Rhodanese-like)|interpro:IPR016156(FAD/NAD-linked reductase, dimerisation)|interpro:IPR023753|refseq:YP_010587.1|refseq:WP_010938663.1|ensemblbacteria:AAS95846(transcript)|ensemblbacteria:DVU_1368(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|interpro:IPR036873|entrezgene/locuslink:2795092(identity) interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007127(RNA polymerase sigma factor 70, region 1.1)|interpro:IPR007624(RNA polymerase sigma-70 region 3)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR009042(RNA polymerase sigma-70 region 1.2)|interpro:IPR012760(RNA polymerase sigma factor RpoD, C-terminal)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|interpro:IPR028630|refseq:YP_011006.1|refseq:WP_010939076.1|ensemblbacteria:AAS96265(transcript)|ensemblbacteria:DVU_1788(gene)|go:"GO:0001123"|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016987"(sigma factor activity)|interpro:IPR036388|interpro:IPR042189|entrezgene/locuslink:2793314(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.53" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zAfVANYX4Q79NnmesRRLpD8kUXA882 rogid:uXlgHdylMF0gkzY6Dq/5S1/2Dzw882 intact-crc:D8AB21A3176A12C7|rigid:rbbEk8Sse6ybY4GMLrxQqmBUIeE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) intact:EBI-10053338 uniprotkb:Q72CD1 - intact:EBI-10069480|ensemblbacteria:AAS95830 psi-mi:dorf10860(display_short)|psi-mi:EBI-10053338(display_long) psi-mi:q72cd1_desvh(display_long)|uniprotkb:DVU_1352(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069477|imex:IM-22740-248 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) - interpro:IPR007115(6-pyruvoyl tetrahydropterin synthase-related)|refseq:YP_010571.1|refseq:WP_010938647.1|ensemblbacteria:AAS95830(transcript)|ensemblbacteria:DVU_1352(gene)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0070497"(6-carboxy-5,6,7,8-tetrahydropterin synthase activity)|interpro:IPR038418|entrezgene/locuslink:2794918(identity) psi-mi:"MI:0469"(intact) comment:"Identified peptides: ELEAYFADK, KELEAYFADK"|comment:"Author predicted score: 0.72" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 - rogid:5Tni/VXMEqcmxx2W+vUJd29bjes882 intact-crc:F8019376465B8A09 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE6 uniprotkb:Q72DE6 intact:EBI-10069535|ensemblbacteria:AAS95815 intact:EBI-10069542|ensemblbacteria:AAS95463 psi-mi:lon_desvh(display_long)|uniprotkb:ATP-dependent protease La(gene name synonym)|uniprotkb:DVU_1337(locus name)|uniprotkb:lon(gene name)|psi-mi:lon(display_short) psi-mi:q72de6_desvh(display_long)|uniprotkb:DVU_0983(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069532|imex:IM-22740-251 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003111(Peptidase S16, lon N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004815(Peptidase S16, ATP-dependent protease La)|interpro:IPR008268(Peptidase S16, active site)|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR015947(PUA-like)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|interpro:IPR027543|refseq:YP_010556.1|refseq:WP_010938632.1|ensemblbacteria:AAS95815(transcript)|ensemblbacteria:DVU_1337(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0034605"(cellular response to heat)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794585(identity) interpro:IPR003729(Protein of unknown function DUF151)|refseq:YP_010204.1|refseq:WP_010938282.1|ensemblbacteria:AAS95463(transcript)|ensemblbacteria:DVU_0983(gene)|go:"GO:0004518"(nuclease activity)|interpro:IPR036104|entrezgene/locuslink:2793325(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.52" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:K+5mhLOOcEzqnf49msI210n9o+s882 rogid:lyEmS5ln0s8rv5N6bjV4OQwaYSY882 intact-crc:6C6FBC1C74A64ABC|rigid:JdHAPwqfG8yIQSbeP9I1kS6HAek false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE6 uniprotkb:Q72F92 intact:EBI-10069535|ensemblbacteria:AAS95815 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:lon_desvh(display_long)|uniprotkb:ATP-dependent protease La(gene name synonym)|uniprotkb:DVU_1337(locus name)|uniprotkb:lon(gene name)|psi-mi:lon(display_short) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069532|imex:IM-22740-251 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003111(Peptidase S16, lon N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004815(Peptidase S16, ATP-dependent protease La)|interpro:IPR008268(Peptidase S16, active site)|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR015947(PUA-like)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|interpro:IPR027543|refseq:YP_010556.1|refseq:WP_010938632.1|ensemblbacteria:AAS95815(transcript)|ensemblbacteria:DVU_1337(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0034605"(cellular response to heat)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794585(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:K+5mhLOOcEzqnf49msI210n9o+s882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:6C6FBC1C74A64ABC|rigid:JdHAPwqfG8yIQSbeP9I1kS6HAek false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CE6 uniprotkb:Q72CV9 intact:EBI-10069535|ensemblbacteria:AAS95815 intact:EBI-10069539|ensemblbacteria:AAS95652 psi-mi:lon_desvh(display_long)|uniprotkb:ATP-dependent protease La(gene name synonym)|uniprotkb:DVU_1337(locus name)|uniprotkb:lon(gene name)|psi-mi:lon(display_short) psi-mi:q72cv9_desvh(display_long)|uniprotkb:DVU_1174(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069532|imex:IM-22740-251 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003111(Peptidase S16, lon N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004815(Peptidase S16, ATP-dependent protease La)|interpro:IPR008268(Peptidase S16, active site)|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR015947(PUA-like)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|interpro:IPR027543|refseq:YP_010556.1|refseq:WP_010938632.1|ensemblbacteria:AAS95815(transcript)|ensemblbacteria:DVU_1337(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0034605"(cellular response to heat)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794585(identity) refseq:YP_010393.1|refseq:WP_010938471.1|ensemblbacteria:AAS95652(transcript)|ensemblbacteria:DVU_1174(gene)|entrezgene/locuslink:2794862(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.93" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:K+5mhLOOcEzqnf49msI210n9o+s882 rogid:JL3SRCfBJ6KSDGjOjAGdWL1L5OQ882 intact-crc:6C6FBC1C74A64ABC|rigid:JdHAPwqfG8yIQSbeP9I1kS6HAek false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CD7 uniprotkb:Q72CD5 intact:EBI-10069492|ensemblbacteria:AAS95824 intact:EBI-10069499|ensemblbacteria:AAS95826 psi-mi:q72cd7_desvh(display_long)|uniprotkb:Exodeoxyribonuclease VII large subunit(gene name synonym)|uniprotkb:DVU_1346(locus name)|uniprotkb:xseA(gene name)|psi-mi:xseA(display_short) psi-mi:ex7s_desvh(display_long)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym)|uniprotkb:DVU_1348(locus name)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069496|imex:IM-22740-249 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003753(Exonuclease VII, large subunit)|interpro:IPR020579|interpro:IPR025824|refseq:WP_010938641.1|refseq:YP_010565.1|ensemblbacteria:AAS95824(transcript)|ensemblbacteria:DVU_1346(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|entrezgene/locuslink:2795145(identity) interpro:IPR003761(Exonuclease VII, small subunit)|refseq:YP_010567.1|refseq:WP_010938643.1|ensemblbacteria:AAS95826(transcript)|ensemblbacteria:DVU_1348(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR037004|entrezgene/locuslink:2795147(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:UhBPTINHhVbs1q6v9m54qnNcuOI882 rogid:eS8KvGZdv0jSmBTU4rJXg9IKjs4882 intact-crc:D7FBB1C2F4DEA63F|rigid:hhtWhh6F+zaV/c4xFTLirpMTzUg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CJ6 uniprotkb:Q72CE0 intact:EBI-10069519|ensemblbacteria:AAS95765 intact:EBI-10069513|ensemblbacteria:AAS95821 psi-mi:q72cj6_desvh(display_long)|uniprotkb:DVU_1287(locus name) psi-mi:q72ce0_desvh(display_long)|uniprotkb:DVU_1343(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069516|imex:IM-22740-250 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR017896|interpro:IPR017900|refseq:YP_010506.1|refseq:WP_010938583.1|ensemblbacteria:AAS95765(transcript)|ensemblbacteria:DVU_1287(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794740(identity) interpro:IPR006127(Periplasmic solute binding protein)|refseq:YP_010562.1|refseq:WP_010938638.1|ensemblbacteria:AAS95821(transcript)|ensemblbacteria:DVU_1343(gene)|go:"GO:0030001"(metal ion transport)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795142(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:XlDLnTxBygAuN9i6MSdRVm1tjzw882 rogid:b9/tS/YMD/EM1eI0pnYbB0r103s882 intact-crc:7711D4E16B59FAAB|rigid:CiLX+hOeuQJxjpLiJGi/Mn5du8g false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CN2 uniprotkb:P45573 intact:EBI-10064808|ensemblbacteria:AAS95729 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:q72cn2_desvh(display_long)|uniprotkb:DVU_1251(locus name) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069582|imex:IM-22740-253 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010470.1|refseq:WP_010938547.1|ensemblbacteria:AAS95729(transcript)|ensemblbacteria:DVU_1251(gene)|entrezgene/locuslink:2795032(identity) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072|entrezgene/locuslink:2796326(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:543MQPkYMIzuko87WvT+PJxPUTY882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:4A031C2847DACED7|rigid:UDGhvPz3C3mKN3hNR4/ov18KkaQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CJ3 uniprotkb:Q72CJ4 intact:EBI-10069569|ensemblbacteria:AAS95768 intact:EBI-10069566|ensemblbacteria:AAS95767 psi-mi:q72cj3_desvh(display_long)|uniprotkb:DVU_1290(locus name) psi-mi:q72cj4_desvh(display_long)|uniprotkb:DVU_1289(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069563|imex:IM-22740-252 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR023234|refseq:YP_010509.1|refseq:WP_010938586.1|ensemblbacteria:AAS95768(transcript)|ensemblbacteria:DVU_1290(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036197|entrezgene/locuslink:2794743(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_010508.1|refseq:WP_010938585.1|ensemblbacteria:AAS95767(transcript)|ensemblbacteria:DVU_1289(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794742(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.90" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:TPQOlnpwF4K94iSpGmF6EV2ULSk882 rogid:QYQP93OhjUPsIi0+TReWxtmZkD0882 intact-crc:144758753DE07B55|rigid:NvyG8PXi90/AfOZdRr46O0EopzM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CS8 uniprotkb:P61452 intact:EBI-10069623|ensemblbacteria:AAS95683 intact:EBI-10069611|ensemblbacteria:AAS96841 psi-mi:acp_desvh(display_long)|uniprotkb:DVU_1205(locus name)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short) psi-mi:fabz_desvh(display_long)|uniprotkb:"(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase"(gene name synonym)|uniprotkb:Beta-hydroxyacyl-ACP dehydratase(gene name synonym)|uniprotkb:DVU_2368(locus name)|uniprotkb:fabZ(gene name)|psi-mi:fabZ(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069608|imex:IM-22740-255 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:YP_010424.1|refseq:WP_010938501.1|ensemblbacteria:AAS95683(transcript)|ensemblbacteria:DVU_1205(gene)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036736|entrezgene/locuslink:2796682(identity) interpro:IPR010084("Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ")|interpro:IPR013114("Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ")|interpro:IPR029069|refseq:YP_011581.1|refseq:WP_010939641.1|ensemblbacteria:AAS96841(transcript)|ensemblbacteria:DVU_2368(gene)|go:"GO:0004317"(3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008659"("(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity")|go:"GO:0008693"(3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0047451"(3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity)|entrezgene/locuslink:2796527(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:PYHz5JnxoFN5sTIaU0qICLcgBZQ882 rogid:06uzME8m4t1mfmvVX5FYT8tcbA8882 intact-crc:33707C1B04991178|rigid:X5L6Plni4IUXvinTX5PYH0ABIUk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CS8 uniprotkb:Q72DY5 intact:EBI-10069623|ensemblbacteria:AAS95683 intact:EBI-10069615|ensemblbacteria:AAS95274 psi-mi:acp_desvh(display_long)|uniprotkb:DVU_1205(locus name)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short) psi-mi:q72dy5_desvh(display_long)|uniprotkb:DVU_0794(locus name)|uniprotkb:fabI(gene name)|psi-mi:fabI(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069608|imex:IM-22740-255 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:YP_010424.1|refseq:WP_010938501.1|ensemblbacteria:AAS95683(transcript)|ensemblbacteria:DVU_1205(gene)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036736|entrezgene/locuslink:2796682(identity) interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR014358("Enoyl-[acyl-carrier-protein] reductase (NADH)")|refseq:YP_010015.1|refseq:WP_010938095.1|ensemblbacteria:AAS95274(transcript)|ensemblbacteria:DVU_0794(gene)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0016631"(enoyl-[acyl-carrier-protein] reductase activity)|go:"GO:0004318"("enoyl-[acyl-carrier-protein] reductase (NADH) activity")|interpro:IPR036291|entrezgene/locuslink:2794516(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:PYHz5JnxoFN5sTIaU0qICLcgBZQ882 rogid:czTD4glti7s7QFfj0SjOsjCWF+k882 intact-crc:33707C1B04991178|rigid:X5L6Plni4IUXvinTX5PYH0ABIUk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CS8 uniprotkb:Q72CS9 intact:EBI-10069623|ensemblbacteria:AAS95683 intact:EBI-10069619|ensemblbacteria:AAS95682 psi-mi:acp_desvh(display_long)|uniprotkb:DVU_1205(locus name)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short) psi-mi:q72cs9_desvh(display_long)|uniprotkb:DVU_1204(locus name)|uniprotkb:fabF(gene name)|psi-mi:fabF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069608|imex:IM-22740-255 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:YP_010424.1|refseq:WP_010938501.1|ensemblbacteria:AAS95683(transcript)|ensemblbacteria:DVU_1205(gene)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036736|entrezgene/locuslink:2796682(identity) interpro:IPR020841|interpro:IPR000794(Beta-ketoacyl synthase)|interpro:IPR014030(Beta-ketoacyl synthase, N-terminal)|interpro:IPR014031(Beta-ketoacyl synthase, C-terminal)|interpro:IPR016039(Thiolase-like)|interpro:IPR017568(3-oxoacyl-[acyl-carrier-protein] synthase 2)|interpro:IPR018201|refseq:YP_010423.1|refseq:WP_010938500.1|ensemblbacteria:AAS95682(transcript)|ensemblbacteria:DVU_1204(gene)|go:"GO:0004315"(3-oxoacyl-[acyl-carrier-protein] synthase activity)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0033817"|entrezgene/locuslink:2796661(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:PYHz5JnxoFN5sTIaU0qICLcgBZQ882 rogid:mq+nfhNJdNQ1WG1VkFX3dqSw/Ic882 intact-crc:33707C1B04991178|rigid:X5L6Plni4IUXvinTX5PYH0ABIUk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CS8 uniprotkb:Q72CS9 intact:EBI-10069623|ensemblbacteria:AAS95683 intact:EBI-10069619|ensemblbacteria:AAS95682 psi-mi:acp_desvh(display_long)|uniprotkb:DVU_1205(locus name)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short) psi-mi:q72cs9_desvh(display_long)|uniprotkb:DVU_1204(locus name)|uniprotkb:fabF(gene name)|psi-mi:fabF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069645|imex:IM-22740-256 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:YP_010424.1|refseq:WP_010938501.1|ensemblbacteria:AAS95683(transcript)|ensemblbacteria:DVU_1205(gene)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR036736|entrezgene/locuslink:2796682(identity) interpro:IPR020841|interpro:IPR000794(Beta-ketoacyl synthase)|interpro:IPR014030(Beta-ketoacyl synthase, N-terminal)|interpro:IPR014031(Beta-ketoacyl synthase, C-terminal)|interpro:IPR016039(Thiolase-like)|interpro:IPR017568(3-oxoacyl-[acyl-carrier-protein] synthase 2)|interpro:IPR018201|refseq:YP_010423.1|refseq:WP_010938500.1|ensemblbacteria:AAS95682(transcript)|ensemblbacteria:DVU_1204(gene)|go:"GO:0004315"(3-oxoacyl-[acyl-carrier-protein] synthase activity)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0033817"|entrezgene/locuslink:2796661(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:PYHz5JnxoFN5sTIaU0qICLcgBZQ882 rogid:mq+nfhNJdNQ1WG1VkFX3dqSw/Ic882 intact-crc:793EFFB62E735C50|rigid:ghAxyXdG8PQFkOdNH/+6SAW0KzU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P61940 uniprotkb:Q72CT3 intact:EBI-10065097|ensemblbacteria:AAS95676 intact:EBI-10069661|ensemblbacteria:AAS95678 psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:q72ct3_desvh(display_long)|uniprotkb:DVU_1200(locus name)|uniprotkb:ribE(gene name)|psi-mi:ribE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069658|imex:IM-22740-257 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467|entrezgene/locuslink:2796655(identity) interpro:IPR001783(Lumazine-binding protein)|interpro:IPR017938|interpro:IPR023366|interpro:IPR026017|refseq:YP_010419.1|refseq:WP_010938496.1|ensemblbacteria:AAS95678(transcript)|ensemblbacteria:DVU_1200(gene)|go:"GO:0004746"(riboflavin synthase activity)|entrezgene/locuslink:2796657(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 rogid:5eIJ31KrN5RDT2EIqiuLjkTefmQ882 intact-crc:82E46533838D0AB4|rigid:Jszc9w+gc+KOlYtYjnzIamK+HKI false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CA6 uniprotkb:Q72CU1 intact:EBI-10069692|ensemblbacteria:AAS95856 intact:EBI-10069688|ensemblbacteria:AAS95670 psi-mi:ilvc_desvh(display_long)|uniprotkb:Acetohydroxy-acid isomeroreductase(gene name synonym)|uniprotkb:Alpha-keto-beta-hydroxylacyl reductoisomerase(gene name synonym)|uniprotkb:Ketol-acid reductoisomerase type 1(gene name synonym)|uniprotkb:Ketol-acid reductoisomerase type I(gene name synonym)|uniprotkb:DVU_1378(locus name)|uniprotkb:ilvC(gene name)|psi-mi:ilvC(display_short) psi-mi:acyp_desvh(display_long)|uniprotkb:Acylphosphate phosphohydrolase(gene name synonym)|uniprotkb:DVU_1192(locus name)|uniprotkb:acyP(gene name)|psi-mi:acyP(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069696|imex:IM-22740-259 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000506(Acetohydroxy acid isomeroreductase C-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR013023(Acetohydroxy acid isomeroreductase)|interpro:IPR013116(Acetohydroxy acid isomeroreductase, catalytic)|refseq:YP_010597.1|refseq:WP_010938673.1|ensemblbacteria:AAS95856(transcript)|ensemblbacteria:DVU_1378(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004455"(ketol-acid reductoisomerase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0050661"(NADP binding)|interpro:IPR014359(Ketol-acid reductoisomerase, gammaproteobacteria)|interpro:IPR036291|entrezgene/locuslink:2793511(identity) interpro:IPR001792(Acylphosphatase)|interpro:IPR017968|interpro:IPR020456|refseq:YP_010411.1|refseq:WP_010938488.1|ensemblbacteria:AAS95670(transcript)|ensemblbacteria:DVU_1192(gene)|go:"GO:0003998"(acylphosphatase activity)|interpro:IPR036046|entrezgene/locuslink:2796592(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.29" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:td23Z6Z3fGNd6zS6PyuZhAslKRo882 rogid:i16S6Wx9EjIn8cprB3g7y82yA9g882 intact-crc:96FDAEC0CD5B7AAD|rigid:cXpev0CGsNBuvk/pcQ0r9Fze/0I false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D42 uniprotkb:Q72D43 intact:EBI-10069744|ensemblbacteria:AAS95568 intact:EBI-10069738|ensemblbacteria:AAS95567 psi-mi:q72d42_desvh(display_long)|uniprotkb:DVU_1088(locus name) psi-mi:q72d43_desvh(display_long)|uniprotkb:DVU_1087(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069741|imex:IM-22740-262 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010309.1|ensemblbacteria:AAS95568(transcript)|ensemblbacteria:DVU_1088(gene)|entrezgene/locuslink:2794067(identity) interpro:IPR002882(Protein of unknown function UPF0052 and CofD)|interpro:IPR027591|refseq:YP_010308.1|ensemblbacteria:AAS95567(transcript)|ensemblbacteria:DVU_1087(gene)|go:"GO:0043743"("LPPG:FO 2-phospho-L-lactate transferase activity")|entrezgene/locuslink:2794066(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jwg3nrcFmmhBWaZ8QqdpmxAmYEo882 rogid:gE5MPWWXKfdBpm1Fy3WRz6a7sC4882 intact-crc:5E5C4B6FB77E78C7|rigid:mhlGr9/hOZCasRO3By2pGRCrPig false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D22 uniprotkb:Q72D85 intact:EBI-10069712|ensemblbacteria:AAS95589 intact:EBI-10064794|ensemblbacteria:AAS95524 psi-mi:q72d22_desvh(display_long)|uniprotkb:DVU_1109(locus name) psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069709|imex:IM-22740-260 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR025669|interpro:IPR027417|refseq:YP_010330.1|refseq:WP_010938408.1|ensemblbacteria:AAS95589(transcript)|ensemblbacteria:DVU_1109(gene)|entrezgene/locuslink:2795082(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.79" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:B9YmHpWrm1fNV/REdLxWH2TfBcc882 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 intact-crc:123B43C63F77717F|rigid:9hQLJQoH8eCTkTcxCXpv0B3d5R0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D36 uniprotkb:Q72AA6 intact:EBI-10067699|ensemblbacteria:AAS95574 intact:EBI-10067695|ensemblbacteria:AAS96564 psi-mi:arly_desvh(display_long)|uniprotkb:Arginosuccinase(gene name synonym)|uniprotkb:DVU_1094(locus name)|uniprotkb:argH(gene name)|psi-mi:argH(display_short) psi-mi:q72aa6_desvh(display_long)|uniprotkb:Thiamine-phosphate pyrophosphorylase(gene name synonym)|uniprotkb:thiE(gene name synonym)|uniprotkb:DVU_2091(locus name)|uniprotkb:thiE-1(gene name)|psi-mi:thiE-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069725|imex:IM-22740-261 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000362(Fumarate lyase)|interpro:IPR008948(L-Aspartase-like)|interpro:IPR009049(Argininosuccinate lyase)|interpro:IPR020557|interpro:IPR022761|interpro:IPR024083|interpro:IPR029419|refseq:YP_010315.1|refseq:WP_010938393.1|ensemblbacteria:AAS95574(transcript)|ensemblbacteria:DVU_1094(gene)|go:"GO:0004056"(argininosuccinate lyase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0042450"(arginine biosynthetic process via ornithine)|entrezgene/locuslink:2794073(identity) interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR022998|refseq:YP_011304.1|refseq:WP_010939368.1|ensemblbacteria:AAS96564(transcript)|ensemblbacteria:DVU_2091(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004789"(thiamine-phosphate diphosphorylase activity)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|interpro:IPR034291|interpro:IPR036206|entrezgene/locuslink:2793545(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:0xiCHW8HKPNzkOA0ytfrjBwB2n0882 rogid:BasX9DyWq68fhggEjrtHYntLy6w882 intact-crc:AA10772F58CB54D6|rigid:zIZak4yaHL0ES8mTRnaE45NjUT0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D47 uniprotkb:Q72D85 intact:EBI-10069791|ensemblbacteria:AAS95563 intact:EBI-10064794|ensemblbacteria:AAS95524 psi-mi:q72d47_desvh(display_long)|uniprotkb:DVU_1083(locus name)|uniprotkb:phoB(gene name)|psi-mi:phoB(display_short) psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069795|imex:IM-22740-265 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|refseq:YP_010304.1|refseq:WP_010938382.1|ensemblbacteria:AAS95563(transcript)|ensemblbacteria:DVU_1083(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR036388|interpro:IPR039420|entrezgene/locuslink:2794461(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yFYiEjQpo+W1HA/q7Up4GJF2UCM882 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 intact-crc:F859BB29140304DB|rigid:iHtQ7pnb7/6VPxkxk9WptAoWbzE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D45 uniprotkb:Q72CS7 intact:EBI-10069077|ensemblbacteria:AAS95565 intact:EBI-10069770|ensemblbacteria:AAS95684 psi-mi:q72d45_desvh(display_long)|uniprotkb:DVU_1085(locus name)|uniprotkb:phoU(gene name)|psi-mi:phoU(display_short) psi-mi:q72cs7_desvh(display_long)|uniprotkb:DVU_1206(locus name)|uniprotkb:fabG(gene name)|psi-mi:fabG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069774|imex:IM-22740-264 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR026022|interpro:IPR028366|refseq:YP_010306.1|refseq:WP_010938384.1|ensemblbacteria:AAS95565(transcript)|ensemblbacteria:DVU_1085(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078|entrezgene/locuslink:2794463(identity) interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR011284("3-oxoacyl-(acyl-carrier-protein) reductase")|interpro:IPR020904|refseq:YP_010425.1|refseq:WP_010938502.1|ensemblbacteria:AAS95684(transcript)|ensemblbacteria:DVU_1206(gene)|go:"GO:0004316"("3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity")|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0051287"(NAD binding)|go:"GO:0102131"(obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity)|go:"GO:0102132"(obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity)|interpro:IPR036291|entrezgene/locuslink:2796683(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.32" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:8bRa7Ad8xK+IgqVObyH5pX3mm7Q882 rogid:nP40fho4nf5FZcXaxfSMEPniz+M882 intact-crc:D5D7FF6673C6FAC8|rigid:QG+wjc/YowOyLx8YMnLif2NL/4E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D45 uniprotkb:Q72C09 intact:EBI-10069077|ensemblbacteria:AAS95565 intact:EBI-10069074|ensemblbacteria:AAS95953 psi-mi:q72d45_desvh(display_long)|uniprotkb:DVU_1085(locus name)|uniprotkb:phoU(gene name)|psi-mi:phoU(display_short) psi-mi:q72c09_desvh(display_long)|uniprotkb:DVU_1475(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069774|imex:IM-22740-264 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR026022|interpro:IPR028366|refseq:YP_010306.1|refseq:WP_010938384.1|ensemblbacteria:AAS95565(transcript)|ensemblbacteria:DVU_1085(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078|entrezgene/locuslink:2794463(identity) interpro:IPR026022|interpro:IPR028366|refseq:YP_010694.1|refseq:WP_010938768.1|ensemblbacteria:AAS95953(transcript)|ensemblbacteria:DVU_1475(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006817"(phosphate ion transport)|go:"GO:0030643"(cellular phosphate ion homeostasis)|go:"GO:0045936"(negative regulation of phosphate metabolic process)|interpro:IPR038078|entrezgene/locuslink:2794144(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.67" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:8bRa7Ad8xK+IgqVObyH5pX3mm7Q882 rogid:rUX9vAQegVimSdnG0jHGTjgH0Kw882 intact-crc:D5D7FF6673C6FAC8|rigid:QG+wjc/YowOyLx8YMnLif2NL/4E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D52 uniprotkb:Q726Q1 intact:EBI-10069827|ensemblbacteria:AAS95558 intact:EBI-10069830|ensemblbacteria:AAS97526 psi-mi:q72d52_desvh(display_long)|uniprotkb:DVU_1078(locus name) psi-mi:q726q1_desvh(display_long)|uniprotkb:DVU_3055(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069821|imex:IM-22740-267 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038008|interpro:IPR001374(Single-stranded nucleic acid binding R3H)|refseq:YP_010299.1|refseq:WP_010938377.1|interpro:IPR032782|ensemblbacteria:AAS95558(transcript)|ensemblbacteria:DVU_1078(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR034079|interpro:IPR038247|interpro:IPR036867|interpro:IPR039247|entrezgene/locuslink:2794456(identity) interpro:IPR003029(S1, RNA binding)|interpro:IPR004659(Ribonuclease E and G)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019307|interpro:IPR022967|refseq:WP_010940314.1|refseq:YP_012266.1|ensemblbacteria:AAS97526(transcript)|ensemblbacteria:DVU_3055(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004540"(ribonuclease activity)|go:"GO:0006396"(RNA processing)|entrezgene/locuslink:2796081(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:07KwcaC+ALxj5tpd0LrHJTq/N/s882 rogid:0DukenNB/4I6W/6xr1RMTApK4ro882 intact-crc:D41104ACE1D51236|rigid:zAq7lh/xkp97rxai+aiVQzWK2oY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D52 uniprotkb:Q72DU1 intact:EBI-10069827|ensemblbacteria:AAS95558 intact:EBI-10069824|ensemblbacteria:AAS95318 psi-mi:q72d52_desvh(display_long)|uniprotkb:DVU_1078(locus name) psi-mi:q72du1_desvh(display_long)|uniprotkb:DVU_0838(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069821|imex:IM-22740-267 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038008|interpro:IPR001374(Single-stranded nucleic acid binding R3H)|refseq:YP_010299.1|refseq:WP_010938377.1|interpro:IPR032782|ensemblbacteria:AAS95558(transcript)|ensemblbacteria:DVU_1078(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR034079|interpro:IPR038247|interpro:IPR036867|interpro:IPR039247|entrezgene/locuslink:2794456(identity) interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR020627|refseq:YP_010059.1|refseq:WP_010938139.1|go:"GO:0003723"(RNA binding)|ensemblbacteria:AAS95318(transcript)|ensemblbacteria:DVU_0838(gene)|interpro:IPR015946(K homology-like, alpha/beta)|entrezgene/locuslink:2794850(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:07KwcaC+ALxj5tpd0LrHJTq/N/s882 rogid:zZAxDHv5dDKNL7qgkl41HiIwAH0882 intact-crc:D41104ACE1D51236|rigid:zAq7lh/xkp97rxai+aiVQzWK2oY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D66 uniprotkb:Q72D97 intact:EBI-10069867|ensemblbacteria:AAS95543 intact:EBI-10069870|ensemblbacteria:AAS95512 psi-mi:q72d66_desvh(display_long)|uniprotkb:DVU_1063(locus name) psi-mi:q72d97_desvh(display_long)|uniprotkb:DVU_1032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069864|imex:IM-22740-269 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_010284.1|ensemblbacteria:AAS95543(transcript)|ensemblbacteria:DVU_1063(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794775(identity) refseq:YP_010253.1|refseq:WP_010938331.1|ensemblbacteria:AAS95512(transcript)|ensemblbacteria:DVU_1032(gene)|entrezgene/locuslink:2796245(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:/FGZfdEl4hpR3T4zNSsEWKoAqlY882 rogid:OdZ827d2Tnphc7z6jrvvxUJX1kc882 intact-crc:00CA4DF1DC67ECE0|rigid:CT5lAsRww9ZksNMQbVcD+kkLrgg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D66 uniprotkb:Q72D85 intact:EBI-10069867|ensemblbacteria:AAS95543 intact:EBI-10064794|ensemblbacteria:AAS95524 psi-mi:q72d66_desvh(display_long)|uniprotkb:DVU_1063(locus name) psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069864|imex:IM-22740-269 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_010284.1|ensemblbacteria:AAS95543(transcript)|ensemblbacteria:DVU_1063(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794775(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:/FGZfdEl4hpR3T4zNSsEWKoAqlY882 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 intact-crc:00CA4DF1DC67ECE0|rigid:CT5lAsRww9ZksNMQbVcD+kkLrgg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D85 uniprotkb:Q726T1 intact:EBI-10064794|ensemblbacteria:AAS95524 intact:EBI-10069904|ensemblbacteria:AAS97496 psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:q726t1_desvh(display_long)|uniprotkb:poR(gene name)|psi-mi:poR(display_short)|uniprotkb:Pyruvate synthase(gene name synonym)|uniprotkb:DVU_3025(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069909|imex:IM-22740-271 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) interpro:IPR033412|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR011895("Pyruvate:ferredoxin (flavodoxin) oxidoreductase")|interpro:IPR017896|interpro:IPR017900|interpro:IPR019456|interpro:IPR019752|interpro:IPR029061|refseq:YP_012236.1|refseq:WP_010940284.1|ensemblbacteria:AAS97496(transcript)|ensemblbacteria:DVU_3025(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0019164"(pyruvate synthase activity)|go:"GO:0022900"(electron transport chain)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037112|entrezgene/locuslink:2796442(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.55" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 rogid:HjxGbqzD+v4RlI5kNJh2g0o5mEI882 intact-crc:CC723B513ABF2CFB|rigid:yrIjYFSDEUcO4yBJeSHkbbS8ASo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA8 uniprotkb:Q72DA7 intact:EBI-10067870|ensemblbacteria:AAS95501 intact:EBI-10069951|ensemblbacteria:AAS95502 psi-mi:q72da8_desvh(display_long)|uniprotkb:DVU_1021(locus name) psi-mi:q72da7_desvh(display_long)|uniprotkb:DVU_1022(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069954|imex:IM-22740-274 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000825(SUF system FeS cluster assembly, SufBD)|refseq:YP_010242.1|refseq:WP_010938320.1|ensemblbacteria:AAS95501(transcript)|ensemblbacteria:DVU_1021(gene)|go:"GO:0016226"(iron-sulfur cluster assembly)|interpro:IPR037284|entrezgene/locuslink:2793744(identity) interpro:IPR010230(SUF system FeS cluster assembly, SufC ATPase)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_010243.1|refseq:WP_010938321.1|ensemblbacteria:AAS95502(transcript)|ensemblbacteria:DVU_1022(gene)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793745(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:fpheqrH7wLrgIp+jXGiRXV9K8yY882 rogid:2kqQWG3W1GWn5hPXsPE127s4/pw882 intact-crc:2DE13CA053695B81|rigid:bJVLfwa5Kzl4v/qkNeIt4FEpQzU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA8 uniprotkb:Q72D94 intact:EBI-10067870|ensemblbacteria:AAS95501 intact:EBI-10069938|ensemblbacteria:AAS95515 psi-mi:q72da8_desvh(display_long)|uniprotkb:DVU_1021(locus name) psi-mi:q72d94_desvh(display_long)|uniprotkb:DVU_1035(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069935|imex:IM-22740-273 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000825(SUF system FeS cluster assembly, SufBD)|refseq:YP_010242.1|refseq:WP_010938320.1|ensemblbacteria:AAS95501(transcript)|ensemblbacteria:DVU_1021(gene)|go:"GO:0016226"(iron-sulfur cluster assembly)|interpro:IPR037284|entrezgene/locuslink:2793744(identity) interpro:IPR003836(Glucokinase)|ensemblbacteria:AAS95515(transcript)|ensemblbacteria:DVU_1035(gene)|go:"GO:0004340"(glucokinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005536"(glucose binding)|go:"GO:0006096"(glycolytic process)|interpro:IPR043129|entrezgene/locuslink:2796248(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.96" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:fpheqrH7wLrgIp+jXGiRXV9K8yY882 rogid:WFjFGOQFFnnv0CVlFl6eKaMXGQU882 intact-crc:C86A9937F4C9DF70|rigid:L5CUql8T3G0pwneebYzfyYTIVH4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F13 uniprotkb:Q72DB7 intact:EBI-10069996|ensemblbacteria:AAS94888 intact:EBI-10070000|ensemblbacteria:AAS95492 psi-mi:q72f13_desvh(display_long)|uniprotkb:Cobyrinic acid a,c-diamide synthetase(gene name synonym)|uniprotkb:cbiA(gene name synonym)|uniprotkb:DVU_0405(locus name)|uniprotkb:cobB-1(gene name)|psi-mi:cobB-1(display_short) psi-mi:q72db7_desvh(display_long)|uniprotkb:DVU_1012(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069993|imex:IM-22740-277 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR004484(Cobyrinic acid a,c-diamide synthase CbiA)|interpro:IPR011698(CobB/CobQ-like glutamine amidotransferase)|interpro:IPR027417|interpro:IPR029062|refseq:YP_009629.1|refseq:WP_010937712.1|ensemblbacteria:AAS94888(transcript)|ensemblbacteria:DVU_0405(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0009236"(cobalamin biosynthetic process)|go:"GO:0042242"(cobyrinic acid a,c-diamide synthase activity)|entrezgene/locuslink:2796155(identity) interpro:IPR002035(von Willebrand factor, type A)|interpro:IPR010221(VCBS)|interpro:IPR011049(Serralysin-like metalloprotease, C-terminal)|interpro:IPR018511|refseq:YP_010233.1|refseq:WP_010938311.1|ensemblbacteria:AAS95492(transcript)|ensemblbacteria:DVU_1012(gene)|go:"GO:0005509"(calcium ion binding)|interpro:IPR013783(Immunoglobulin-like fold)|interpro:IPR036465|interpro:IPR040853|interpro:IPR001343(Haemolysin-type calcium-binding region)|entrezgene/locuslink:2794650(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.94" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bFjBPICxF7WxZiyxcioI5nqmbDw882 rogid:j6yzspWr15cOn9QM+H6gdlRLyPQ882 intact-crc:1F6161087C18D1DC|rigid:VO1xQzOKsXgE+XD1PDzyw8lXXiQ false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA7 uniprotkb:Q72DA8 intact:EBI-10069951|ensemblbacteria:AAS95502 intact:EBI-10067870|ensemblbacteria:AAS95501 psi-mi:q72da7_desvh(display_long)|uniprotkb:DVU_1022(locus name) psi-mi:q72da8_desvh(display_long)|uniprotkb:DVU_1021(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069967|imex:IM-22740-275 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010230(SUF system FeS cluster assembly, SufC ATPase)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_010243.1|refseq:WP_010938321.1|ensemblbacteria:AAS95502(transcript)|ensemblbacteria:DVU_1022(gene)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793745(identity) interpro:IPR000825(SUF system FeS cluster assembly, SufBD)|refseq:YP_010242.1|refseq:WP_010938320.1|ensemblbacteria:AAS95501(transcript)|ensemblbacteria:DVU_1021(gene)|go:"GO:0016226"(iron-sulfur cluster assembly)|interpro:IPR037284|entrezgene/locuslink:2793744(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:2kqQWG3W1GWn5hPXsPE127s4/pw882 rogid:fpheqrH7wLrgIp+jXGiRXV9K8yY882 intact-crc:71B65A4309787F31|rigid:bJVLfwa5Kzl4v/qkNeIt4FEpQzU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DC9 uniprotkb:Q72DS5 intact:EBI-10070038|ensemblbacteria:AAS95480 intact:EBI-10070029|ensemblbacteria:AAS95334 psi-mi:q72dc9_desvh(display_long)|uniprotkb:DVU_1000(locus name) psi-mi:ahba_desvh(display_long)|uniprotkb:DVU_0854(locus name)|uniprotkb:ahbA(gene name)|psi-mi:ahbA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070035|imex:IM-22740-279 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000587(Creatinase)|interpro:IPR000994(Peptidase M24, catalytic core)|interpro:IPR029149|refseq:YP_010221.1|refseq:WP_010938299.1|ensemblbacteria:AAS95480(transcript)|ensemblbacteria:DVU_1000(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036005|entrezgene/locuslink:2795116(identity) interpro:IPR000485(Transcription regulator, AsnC/Lrp)|refseq:YP_010075.1|refseq:WP_010938154.1|ensemblbacteria:AAS95334(transcript)|ensemblbacteria:DVU_0854(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016829"(lyase activity)|go:"GO:0043565"(sequence-specific DNA binding)|interpro:IPR040523|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2794183(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:xiKI5QacX1NLkIWHANw10bWSSMw882 rogid:qaiFlK+73tflzG6JkOBnw818l2E882 intact-crc:8EAB79ABA74BAA2D|rigid:FcuwTzsv0+1N9MIxBri3Zhtdtug false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DC9 uniprotkb:Q725I2 intact:EBI-10070038|ensemblbacteria:AAS95480 intact:EBI-10070032|ensemblbacteria:AAS97637 psi-mi:q72dc9_desvh(display_long)|uniprotkb:DVU_1000(locus name) psi-mi:ahbb_desvh(display_long)|uniprotkb:ahbB(gene name)|psi-mi:ahbB(display_short)|uniprotkb:DVU_3167(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070035|imex:IM-22740-279 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000587(Creatinase)|interpro:IPR000994(Peptidase M24, catalytic core)|interpro:IPR029149|refseq:YP_010221.1|refseq:WP_010938299.1|ensemblbacteria:AAS95480(transcript)|ensemblbacteria:DVU_1000(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036005|entrezgene/locuslink:2795116(identity) interpro:IPR019888|refseq:YP_012377.1|refseq:WP_010940425.1|ensemblbacteria:AAS97637(transcript)|ensemblbacteria:DVU_3167(gene)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0016829"(lyase activity)|interpro:IPR040523|interpro:IPR036390|entrezgene/locuslink:2795872(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:xiKI5QacX1NLkIWHANw10bWSSMw882 rogid:KZz0Z88+2J4GOyInp6o0mhmhEMM882 intact-crc:8EAB79ABA74BAA2D|rigid:FcuwTzsv0+1N9MIxBri3Zhtdtug false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E06 uniprotkb:Q72DE5 intact:EBI-10070062|ensemblbacteria:AAS95253 intact:EBI-10070058|ensemblbacteria:AAS95464 psi-mi:q72e06_desvh(display_long)|uniprotkb:DVU_0773(locus name) psi-mi:miab_desvh(display_long)|uniprotkb:"(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB"(gene name synonym)|uniprotkb:"tRNA-i(6)A37 methylthiotransferase"(gene name synonym)|uniprotkb:DVU_0984(locus name)|uniprotkb:miaB(gene name)|psi-mi:miaB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070055|imex:IM-22740-280 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009994.1|refseq:WP_010938074.1|ensemblbacteria:AAS95253(transcript)|ensemblbacteria:DVU_0773(gene)|entrezgene/locuslink:2794844(identity) interpro:IPR002792(Deoxyribonuclease/rho motif-related TRAM)|interpro:IPR005839(Protein of unknown function UPF0004)|interpro:IPR006463("tRNA-i(6)A37 modification enzyme MiaB")|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013848(Protein of unknown function UPF0004, N-terminal)|interpro:IPR020612|interpro:IPR023404|refseq:YP_010205.1|refseq:WP_010938283.1|ensemblbacteria:AAS95464(transcript)|ensemblbacteria:DVU_0984(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006400"(tRNA modification)|go:"GO:0035596"(methylthiotransferase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR038135|entrezgene/locuslink:2793326(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:y1plPfPiBP7J3U4ggIn3AeXvmuI882 rogid:eLb3mi5DYUOz6sWozvP1VUD6FtY882 intact-crc:7989F21317F6B33E|rigid:+Sr4Lr2rX7sspKHhzal04bghulQ false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DE6 uniprotkb:Q726V2 intact:EBI-10069542|ensemblbacteria:AAS95463 intact:EBI-10070078|ensemblbacteria:AAS97475 psi-mi:q72de6_desvh(display_long)|uniprotkb:DVU_0983(locus name) psi-mi:q726v2_desvh(display_long)|uniprotkb:DVU_3004(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070075|imex:IM-22740-281 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003729(Protein of unknown function DUF151)|refseq:YP_010204.1|refseq:WP_010938282.1|ensemblbacteria:AAS95463(transcript)|ensemblbacteria:DVU_0983(gene)|go:"GO:0004518"(nuclease activity)|interpro:IPR036104|entrezgene/locuslink:2793325(identity) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR023885|interpro:IPR029044|refseq:YP_012215.1|ensemblbacteria:AAS97475(transcript)|ensemblbacteria:DVU_3004(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793717(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.47" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lyEmS5ln0s8rv5N6bjV4OQwaYSY882 rogid:KcIyHzFmrnxqtKOrnN9LJXpRids882 intact-crc:1F0657768859504D|rigid:eFs81+tXCIakbt7CotOmjWrRrDA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DE6 uniprotkb:Q72F92 intact:EBI-10069542|ensemblbacteria:AAS95463 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:q72de6_desvh(display_long)|uniprotkb:DVU_0983(locus name) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070075|imex:IM-22740-281 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003729(Protein of unknown function DUF151)|refseq:YP_010204.1|refseq:WP_010938282.1|ensemblbacteria:AAS95463(transcript)|ensemblbacteria:DVU_0983(gene)|go:"GO:0004518"(nuclease activity)|interpro:IPR036104|entrezgene/locuslink:2793325(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.93" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lyEmS5ln0s8rv5N6bjV4OQwaYSY882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:1F0657768859504D|rigid:eFs81+tXCIakbt7CotOmjWrRrDA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EW8 uniprotkb:Q72DE8 intact:EBI-10070108|ensemblbacteria:AAS94933 intact:EBI-10070115|ensemblbacteria:AAS95461 psi-mi:q72ew8_desvh(display_long)|uniprotkb:DVU_0450(locus name)|uniprotkb:ribF(gene name)|psi-mi:ribF(display_short) psi-mi:q72de8_desvh(display_long)|uniprotkb:DVU_0981(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070112|imex:IM-22740-283 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002606(Riboflavin kinase/FAD synthetase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR015864(FAD synthetase)|interpro:IPR015865(Riboflavin kinase)|interpro:IPR023465|interpro:IPR023468|refseq:YP_009674.1|refseq:WP_010937757.1|ensemblbacteria:AAS94933(transcript)|ensemblbacteria:DVU_0450(gene)|go:"GO:0003919"(FMN adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006747"(FAD biosynthetic process)|go:"GO:0008531"(riboflavin kinase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009398"(FMN biosynthetic process)|entrezgene/locuslink:2793373(identity) interpro:IPR000032(Phosphotransferase system, phosphocarrier HPr protein)|interpro:IPR000121(PEP-utilizing enzyme)|interpro:IPR001020(Phosphotransferase system, HPr histidine phosphorylation site)|interpro:IPR004701(Phosphotransferase system, fructose subfamily IIA component)|interpro:IPR006318(Phosphoenolpyruvate-protein phosphotransferase)|interpro:IPR008279(PEP-utilising enzyme, mobile region)|interpro:IPR008731(Phosphotransferase system, PEP-utilising enzyme, N-terminal)|interpro:IPR012844(Dihydroxyacetone kinase, subunit phosphotransferase)|interpro:IPR015813(Pyruvate/Phosphoenolpyruvate kinase, catalytic core)|interpro:IPR018274|refseq:YP_010202.1|refseq:WP_010938280.1|ensemblbacteria:AAS95461(transcript)|ensemblbacteria:DVU_0981(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008965"(phosphoenolpyruvate-protein phosphotransferase activity)|go:"GO:0009401"(phosphoenolpyruvate-dependent sugar phosphotransferase system)|go:"GO:0016021"(integral component of membrane)|go:"GO:0046872"(metal ion binding)|go:"GO:0047324"(phosphoenolpyruvate-glycerone phosphotransferase activity)|interpro:IPR035895|interpro:IPR036618|interpro:IPR036662|interpro:IPR036637|interpro:IPR040442|entrezgene/locuslink:2793323(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:aw+C1tz12pItxX+84NeacplKi5c882 rogid:G8KIrlZ3t7zcwDT43XeBs1nygzw882 intact-crc:2DFBD649843A8CCB|rigid:DV/0PwmPAS1gBHSf5RkUnOjJKnw false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CT6 uniprotkb:Q72DH8 intact:EBI-10070163|ensemblbacteria:AAS95675 intact:EBI-10070167|ensemblbacteria:AAS95431 psi-mi:nusb_desvh(display_long)|uniprotkb:nusB(gene name)|psi-mi:nusB(display_short)|uniprotkb:Antitermination factor NusB(gene name synonym)|uniprotkb:DVU_1197(locus name) psi-mi:q72dh8_desvh(display_long)|uniprotkb:DVU_0951(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070160|imex:IM-22740-286 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR011605(NusB antitermination factor)|refseq:YP_010416.1|refseq:WP_010938493.1|ensemblbacteria:AAS95675(transcript)|ensemblbacteria:DVU_1197(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0031564"(transcription antitermination)|interpro:IPR035926|entrezgene/locuslink:2796654(identity) interpro:IPR038987|interpro:IPR001453(Molybdopterin binding)|interpro:IPR005110(MoeA, N-terminal, domain I and II)|interpro:IPR005111(MoeA, C-terminal, domain IV)|refseq:YP_010172.1|refseq:WP_010938250.1|ensemblbacteria:AAS95431(transcript)|ensemblbacteria:DVU_0951(gene)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0032324"(molybdopterin cofactor biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0061599"(molybdopterin molybdotransferase activity)|interpro:IPR036135|interpro:IPR036425|interpro:IPR036688|entrezgene/locuslink:2794595(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.33" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:FcjXg45ljIgaoUpaYdbX+8ggb6U882 rogid:jfLOJBXgGRfEVSuZy4qxSuhUr88882 intact-crc:ADA8526B34368298|rigid:HaT9BjRtA0Gl6+TC1OjhBEwS56k false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DG1 uniprotkb:Q72DG2 intact:EBI-10070131|ensemblbacteria:AAS95448 intact:EBI-10070134|ensemblbacteria:AAS95447 psi-mi:q72dg1_desvh(display_long)|uniprotkb:DVU_0968(locus name) psi-mi:q72dg2_desvh(display_long)|uniprotkb:DVU_0967(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070128|imex:IM-22740-284 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:YP_010189.1|interpro:IPR030679|refseq:WP_010938267.1|ensemblbacteria:AAS95448(transcript)|ensemblbacteria:DVU_0968(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015424"(ABC-type amino acid transporter activity)|entrezgene/locuslink:2796144(identity) interpro:IPR000515(Binding-protein-dependent transport systems inner membrane component)|interpro:IPR010065(Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine)|refseq:YP_010188.1|refseq:WP_010938266.1|ensemblbacteria:AAS95447(transcript)|ensemblbacteria:DVU_0967(gene)|go:"GO:0006865"(amino acid transport)|go:"GO:0022857"(transmembrane transporter activity)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|interpro:IPR035906|interpro:IPR043429|entrezgene/locuslink:2794470(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ZIYKPaJeJk9mk5whyr9yxp7DBQ4882 rogid:5XYRLTPe8Hkjq27hCwephwlwVjE882 intact-crc:B9859B3D1BB07C00|rigid:sprtJHUkC2RXyl+ll5TMgXnwXkk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DJ6 uniprotkb:Q72DJ7 intact:EBI-10070219|ensemblbacteria:AAS95413 intact:EBI-10070216|ensemblbacteria:AAS95412 psi-mi:q72dj6_desvh(display_long)|uniprotkb:DVU_0933(locus name) psi-mi:q72dj7_desvh(display_long)|uniprotkb:DVU_0932(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070222|imex:IM-22740-289 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010938232.1|interpro:IPR000014(PAS)|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR011006(CheY-like)|refseq:YP_010154.1|ensemblbacteria:AAS95413(transcript)|ensemblbacteria:DVU_0933(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|interpro:IPR035965|entrezgene/locuslink:2794633(identity) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR005467(Signal transduction histidine kinase, core)|refseq:WP_010938231.1|refseq:YP_010153.1|ensemblbacteria:AAS95412(transcript)|ensemblbacteria:DVU_0932(gene)|go:"GO:0016301"(kinase activity)|interpro:IPR036890|entrezgene/locuslink:2794632(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.68" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ksSZYkicLqwYRM6NHE71XTKzdk8882 rogid:K792vYRyDNQ/pOqLH28rN8Vuy0M882 intact-crc:CFC251931EE34419|rigid:6a1XWT6Kgz8ygzciUc2vTS6770w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DI3 uniprotkb:Q72EK0 intact:EBI-10069337|ensemblbacteria:AAS95426 intact:EBI-10070186|ensemblbacteria:AAS95059 psi-mi:q72di3_desvh(display_long)|uniprotkb:DVU_0946(locus name) psi-mi:q72ek0_desvh(display_long)|uniprotkb:DVU_0578(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070183|imex:IM-22740-287 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_010167.1|refseq:WP_010938245.1|ensemblbacteria:AAS95426(transcript)|ensemblbacteria:DVU_0946(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794590(identity) interpro:IPR003786(Formate dehydrogenase, subunit FdhD)|interpro:IPR016193(Cytidine deaminase-like)|refseq:YP_009800.1|refseq:WP_010937881.1|ensemblbacteria:AAS95059(transcript)|ensemblbacteria:DVU_0578(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0016783"(sulfurtransferase activity)|entrezgene/locuslink:2794563(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.34" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:FJt8RYD3poiEkHTx8ZkIJniRK4A882 rogid:NyP55ZqUj1gFp7z6GJToFx+u/XI882 intact-crc:95FB856351664B08|rigid:BDDtj9NfNwdbvw9S1zbxNpq+zvo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DI3 uniprotkb:Q72DQ3 intact:EBI-10069337|ensemblbacteria:AAS95426 intact:EBI-10070180|ensemblbacteria:AAS95356 psi-mi:q72di3_desvh(display_long)|uniprotkb:DVU_0946(locus name) psi-mi:q72dq3_desvh(display_long)|uniprotkb:rnj(gene name)|psi-mi:rnj(display_short)|uniprotkb:DVU_0876(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070183|imex:IM-22740-287 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_010167.1|refseq:WP_010938245.1|ensemblbacteria:AAS95426(transcript)|ensemblbacteria:DVU_0946(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794590(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR001587(Protein of unknown function UPF0036, conserved site)|interpro:IPR004613(Conserved hypothetical protein MG423)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|refseq:YP_010097.1|interpro:IPR030854|refseq:WP_010938175.1|ensemblbacteria:AAS95356(transcript)|ensemblbacteria:DVU_0876(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0004534"(5'-3' exoribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR036866|interpro:IPR042173|interpro:IPR041636|entrezgene/locuslink:2795130(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:FJt8RYD3poiEkHTx8ZkIJniRK4A882 rogid:3Iz/fHOOUSOj7o16dcKIxQEu7K0882 intact-crc:95FB856351664B08|rigid:BDDtj9NfNwdbvw9S1zbxNpq+zvo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DL8 uniprotkb:Q72FQ1 intact:EBI-10070235|ensemblbacteria:AAS95391 intact:EBI-10065635|ensemblbacteria:AAS94646 psi-mi:trua_desvh(display_long)|uniprotkb:"tRNA pseudouridine(38-40) synthase"(gene name synonym)|uniprotkb:tRNA pseudouridylate synthase I(gene name synonym)|uniprotkb:tRNA-uridine isomerase I(gene name synonym)|uniprotkb:DVU_0911(locus name)|uniprotkb:truA(gene name)|psi-mi:truA(display_short) psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070239|imex:IM-22740-290 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001406(tRNA pseudouridine synthase)|interpro:IPR020095|interpro:IPR020097|interpro:IPR020103|refseq:YP_010132.1|refseq:WP_010938210.1|ensemblbacteria:AAS95391(transcript)|ensemblbacteria:DVU_0911(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0031119"(tRNA pseudouridine synthesis)|go:"GO:0106029"(tRNA pseudouridine synthase activity)|interpro:IPR020094|entrezgene/locuslink:2794664(identity) interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914|entrezgene/locuslink:2796778(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.97" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:xy7Ddm8yt+vMdCqiyy/DqUt/AtU882 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 intact-crc:F5CC27F71BAE09D4|rigid:yqQ2/1p8qMGUr7/WXXEFymZErzY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DR6 uniprotkb:Q72F09 intact:EBI-10070289|ensemblbacteria:AAS95343 intact:EBI-10070286|ensemblbacteria:AAS94892 psi-mi:q72dr6_desvh(display_long)|uniprotkb:Flagellar cap protein(gene name synonym)|uniprotkb:DVU_0863(locus name) psi-mi:q72f09_desvh(display_long)|uniprotkb:DVU_0409(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070292|imex:IM-22740-293 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003481(Flagellar hook-associated protein 2, N-terminal)|interpro:IPR010809(Flagellar hook-associated 2, C-terminal)|refseq:YP_010084.1|refseq:WP_010938162.1|ensemblbacteria:AAS95343(transcript)|ensemblbacteria:DVU_0863(gene)|go:"GO:0005576"(extracellular region)|go:"GO:0007155"(cell adhesion)|go:"GO:0009421"(bacterial-type flagellum filament cap)|go:"GO:0009424"(bacterial-type flagellum hook)|interpro:IPR040026|entrezgene/locuslink:2796160(identity) refseq:YP_009633.1|refseq:WP_010937716.1|ensemblbacteria:AAS94892(transcript)|ensemblbacteria:DVU_0409(gene)|entrezgene/locuslink:2793710(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:NImy6Ka91iER9qBU40GIveyZxG0882 rogid:rvDeAdEj7JDUSwC3hFoP+p9SwR4882 intact-crc:4F01B693B7A7AB30|rigid:kCmqRkD32JibuY3tgSkCR+8Bm9A false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS8 uniprotkb:Q72DT1 intact:EBI-10070308|ensemblbacteria:AAS95331 intact:EBI-10068244|ensemblbacteria:AAS95328 psi-mi:q72ds8_desvh(display_long)|uniprotkb:DVU_0851(locus name) psi-mi:q72dt1_desvh(display_long)|uniprotkb:DVU_0848(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070305|imex:IM-22740-294 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010072.1|refseq:WP_010938151.1|ensemblbacteria:DVU_0851(gene)|ensemblbacteria:AAS95331(transcript)|entrezgene/locuslink:2794180(identity) refseq:YP_010069.1|refseq:WP_010938148.1|ensemblbacteria:AAS95328(transcript)|ensemblbacteria:DVU_0848(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR023753|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2795199(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:E+DnBDT+UKmTb3MFm/r+lc56m9Y882 rogid:8fJEeFdsNociGk3VqQ6Jvr/Q4gs882 intact-crc:501066D1BB1F0B2E|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS8 uniprotkb:Q72DT0 intact:EBI-10070308|ensemblbacteria:AAS95331 intact:EBI-10070311|ensemblbacteria:AAS95329 psi-mi:q72ds8_desvh(display_long)|uniprotkb:DVU_0851(locus name) psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070305|imex:IM-22740-294 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010072.1|refseq:WP_010938151.1|ensemblbacteria:DVU_0851(gene)|ensemblbacteria:AAS95331(transcript)|entrezgene/locuslink:2794180(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:E+DnBDT+UKmTb3MFm/r+lc56m9Y882 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 intact-crc:501066D1BB1F0B2E|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS8 uniprotkb:Q72DS9 intact:EBI-10070308|ensemblbacteria:AAS95331 intact:EBI-10070314|ensemblbacteria:AAS95330 psi-mi:q72ds8_desvh(display_long)|uniprotkb:DVU_0851(locus name) psi-mi:q72ds9_desvh(display_long)|uniprotkb:DVU_0850(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070305|imex:IM-22740-294 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010072.1|refseq:WP_010938151.1|ensemblbacteria:DVU_0851(gene)|ensemblbacteria:AAS95331(transcript)|entrezgene/locuslink:2794180(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_010071.1|refseq:WP_010938150.1|ensemblbacteria:AAS95330(transcript)|ensemblbacteria:DVU_0850(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036197|entrezgene/locuslink:2795201(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.83" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:E+DnBDT+UKmTb3MFm/r+lc56m9Y882 rogid:6mCiza3oir+Bgg4hU7lTDFS59AQ882 intact-crc:501066D1BB1F0B2E|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72G17 uniprotkb:Q72DL9 intact:EBI-10070272|ensemblbacteria:AAS94530 intact:EBI-10070265|ensemblbacteria:AAS95390 psi-mi:q72g17_desvh(display_long)|uniprotkb:DVU_0046(locus name)|uniprotkb:fliN(gene name)|psi-mi:fliN(display_short) psi-mi:q72dl9_desvh(display_long)|uniprotkb:DVU_0910(locus name)|uniprotkb:fliM(gene name)|psi-mi:fliM(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070269|imex:IM-22740-292 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|refseq:YP_009271.1|refseq:WP_010937357.1|ensemblbacteria:AAS94530(transcript)|ensemblbacteria:DVU_0046(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0016020"(membrane)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR036429|entrezgene/locuslink:2794699(identity) interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR001689(Flagellar motor switch protein FliM)|interpro:IPR028976|refseq:YP_010131.1|refseq:WP_010938209.1|ensemblbacteria:AAS95390(transcript)|ensemblbacteria:DVU_0910(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR036429|entrezgene/locuslink:2794663(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.93" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:7svK9NXlE+9UxjIwzx2C9uSIdPg882 rogid:zBURU8Qi05Sx5HEDdVEsLoB+BZU882 intact-crc:F508F140842BD372|rigid:LUkGnn4BYx0fOenF2G6SWq+5hxk false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:Q72DT1 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-10068244|ensemblbacteria:AAS95328 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q72dt1_desvh(display_long)|uniprotkb:DVU_0848(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070356|imex:IM-22740-296 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) refseq:YP_010069.1|refseq:WP_010938148.1|ensemblbacteria:AAS95328(transcript)|ensemblbacteria:DVU_0848(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR023753|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2795199(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:8fJEeFdsNociGk3VqQ6Jvr/Q4gs882 intact-crc:3A6BC13E91D04CC2|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:Q72DS8 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-10070308|ensemblbacteria:AAS95331 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q72ds8_desvh(display_long)|uniprotkb:DVU_0851(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070356|imex:IM-22740-296 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) refseq:YP_010072.1|refseq:WP_010938151.1|ensemblbacteria:DVU_0851(gene)|ensemblbacteria:AAS95331(transcript)|entrezgene/locuslink:2794180(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:E+DnBDT+UKmTb3MFm/r+lc56m9Y882 intact-crc:3A6BC13E91D04CC2|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:Q72DS9 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-10070314|ensemblbacteria:AAS95330 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q72ds9_desvh(display_long)|uniprotkb:DVU_0850(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070356|imex:IM-22740-296 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_010071.1|refseq:WP_010938150.1|ensemblbacteria:AAS95330(transcript)|ensemblbacteria:DVU_0850(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036197|entrezgene/locuslink:2795201(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.67" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:6mCiza3oir+Bgg4hU7lTDFS59AQ882 intact-crc:3A6BC13E91D04CC2|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT6 uniprotkb:Q72DQ7 intact:EBI-10070398|ensemblbacteria:AAS95323 intact:EBI-10070401|ensemblbacteria:AAS95352 psi-mi:q72dt6_desvh(display_long)|uniprotkb:DVU_0843(locus name) psi-mi:q72dq7_desvh(display_long)|uniprotkb:DVU_0872(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070404|imex:IM-22740-298 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001986(3-phosphoshikimate 1-carboxyvinyltransferase, core)|interpro:IPR013792(RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)|ensemblbacteria:AAS95323(transcript)|ensemblbacteria:DVU_0843(gene)|go:"GO:0016765"("transferase activity, transferring alkyl or aryl (other than methyl) groups")|interpro:IPR036968|entrezgene/locuslink:2795194(identity) interpro:IPR001173(Glycosyl transferase, family 2)|interpro:IPR029044|refseq:YP_010093.1|refseq:WP_010938171.1|ensemblbacteria:AAS95352(transcript)|ensemblbacteria:DVU_0872(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2795171(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.97" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:kNLG5wjMPtvQhcJNffB8UZe6sDY882 rogid:68aDFdJ5nUACL9v+DTH/98l7d2o882 intact-crc:15A02FEAC94C0D54|rigid:RJ/KxTVJ5bzSRWoZHqzwzuEOnDE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DU3 uniprotkb:Q72FB7 intact:EBI-10069213|ensemblbacteria:AAS95316 intact:EBI-10070463|ensemblbacteria:AAS94780 psi-mi:trmd_desvh(display_long)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym)|uniprotkb:DVU_0836(locus name)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short) psi-mi:q72fb7_desvh(display_long)|uniprotkb:DVU_0297(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070460|imex:IM-22740-302 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR023148|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR019230|interpro:IPR029026|interpro:IPR029028|refseq:YP_010057.1|refseq:WP_010938137.1|ensemblbacteria:AAS95316(transcript)|ensemblbacteria:DVU_0836(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|entrezgene/locuslink:2794848(identity) refseq:YP_009521.1|interpro:IPR032587|ensemblbacteria:AAS94780(transcript)|ensemblbacteria:DVU_0297(gene)|entrezgene/locuslink:2795181(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:JzxZzMGyF2NhZkiUkc1jEB/A1Ck882 rogid:z4RK5lQYLK87xG2hQL8d5FK/zPY882 intact-crc:6DF20B517FA46E20|rigid:AoKvzzzN5kLBkKVZYjiNkbMhyUY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DU3 uniprotkb:Q72C30 intact:EBI-10069213|ensemblbacteria:AAS95316 intact:EBI-10069217|ensemblbacteria:AAS95932 psi-mi:trmd_desvh(display_long)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym)|uniprotkb:DVU_0836(locus name)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short) psi-mi:ispdf_desvh(display_long)|uniprotkb:ispD(gene name synonym)|uniprotkb:DVU_1454(locus name)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070460|imex:IM-22740-302 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR023148|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR019230|interpro:IPR029026|interpro:IPR029028|refseq:YP_010057.1|refseq:WP_010938137.1|ensemblbacteria:AAS95316(transcript)|ensemblbacteria:DVU_0836(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|entrezgene/locuslink:2794848(identity) interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|interpro:IPR029044|refseq:YP_010673.1|refseq:WP_010938747.1|ensemblbacteria:AAS95932(transcript)|ensemblbacteria:DVU_1454(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|interpro:IPR034683|interpro:IPR036571|entrezgene/locuslink:2794820(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:JzxZzMGyF2NhZkiUkc1jEB/A1Ck882 rogid:09vx9flKicV2MNGXlhhB263lymE882 intact-crc:6DF20B517FA46E20|rigid:AoKvzzzN5kLBkKVZYjiNkbMhyUY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DU1 uniprotkb:Q726Q1 intact:EBI-10069824|ensemblbacteria:AAS95318 intact:EBI-10069830|ensemblbacteria:AAS97526 psi-mi:q72du1_desvh(display_long)|uniprotkb:DVU_0838(locus name) psi-mi:q726q1_desvh(display_long)|uniprotkb:DVU_3055(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070430|imex:IM-22740-300 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR020627|refseq:YP_010059.1|refseq:WP_010938139.1|go:"GO:0003723"(RNA binding)|ensemblbacteria:AAS95318(transcript)|ensemblbacteria:DVU_0838(gene)|interpro:IPR015946(K homology-like, alpha/beta)|entrezgene/locuslink:2794850(identity) interpro:IPR003029(S1, RNA binding)|interpro:IPR004659(Ribonuclease E and G)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019307|interpro:IPR022967|refseq:WP_010940314.1|refseq:YP_012266.1|ensemblbacteria:AAS97526(transcript)|ensemblbacteria:DVU_3055(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004540"(ribonuclease activity)|go:"GO:0006396"(RNA processing)|entrezgene/locuslink:2796081(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zZAxDHv5dDKNL7qgkl41HiIwAH0882 rogid:0DukenNB/4I6W/6xr1RMTApK4ro882 intact-crc:290443110FA32AA4|rigid:zAq7lh/xkp97rxai+aiVQzWK2oY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DU1 uniprotkb:Q72D52 intact:EBI-10069824|ensemblbacteria:AAS95318 intact:EBI-10069827|ensemblbacteria:AAS95558 psi-mi:q72du1_desvh(display_long)|uniprotkb:DVU_0838(locus name) psi-mi:q72d52_desvh(display_long)|uniprotkb:DVU_1078(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070430|imex:IM-22740-300 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR020627|refseq:YP_010059.1|refseq:WP_010938139.1|go:"GO:0003723"(RNA binding)|ensemblbacteria:AAS95318(transcript)|ensemblbacteria:DVU_0838(gene)|interpro:IPR015946(K homology-like, alpha/beta)|entrezgene/locuslink:2794850(identity) interpro:IPR038008|interpro:IPR001374(Single-stranded nucleic acid binding R3H)|refseq:YP_010299.1|refseq:WP_010938377.1|interpro:IPR032782|ensemblbacteria:AAS95558(transcript)|ensemblbacteria:DVU_1078(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR034079|interpro:IPR038247|interpro:IPR036867|interpro:IPR039247|entrezgene/locuslink:2794456(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zZAxDHv5dDKNL7qgkl41HiIwAH0882 rogid:07KwcaC+ALxj5tpd0LrHJTq/N/s882 intact-crc:290443110FA32AA4|rigid:zAq7lh/xkp97rxai+aiVQzWK2oY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72DV4 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10070493|ensemblbacteria:AAS95305 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:seca_desvh(display_long)|uniprotkb:DVU_0825(locus name)|uniprotkb:secA(gene name)|psi-mi:secA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070497|imex:IM-22740-304 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR000185(SecA protein)|interpro:IPR004027(SEC-C motif)|interpro:IPR011115(SecA DEAD-like)|interpro:IPR011116(SecA Wing and Scaffold)|interpro:IPR011130(SecA preprotein cross-linking region)|interpro:IPR014018(SecA motor DEAD)|interpro:IPR020937|interpro:IPR027417|refseq:WP_010938126.1|refseq:YP_010046.1|ensemblbacteria:AAS95305(transcript)|ensemblbacteria:DVU_0825(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0008564"(protein-exporting ATPase activity)|go:"GO:0017038"(protein import)|go:"GO:0046872"(metal ion binding)|go:"GO:0065002"(intracellular protein transmembrane transport)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR044722|interpro:IPR036266|interpro:IPR036670|entrezgene/locuslink:2796172(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.89" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:d9MiQ/edCFySP/pJp7NN47vSXF0882 intact-crc:CB059BBE6B9BE8F2|rigid:RuM43Sq/M5Y006XblrX5s9TapGI false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DX0 uniprotkb:Q72AV5 intact:EBI-10068337|ensemblbacteria:AAS95289 intact:EBI-10068341|ensemblbacteria:AAS96361 psi-mi:gatc_desvh(display_long)|uniprotkb:DVU_0809(locus name)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short) psi-mi:gatb_desvh(display_long)|uniprotkb:DVU_1885(locus name)|uniprotkb:gatB(gene name)|psi-mi:gatB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070510|imex:IM-22740-305 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|refseq:YP_010030.1|refseq:WP_010938110.1|ensemblbacteria:AAS95289(transcript)|ensemblbacteria:DVU_0809(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|entrezgene/locuslink:2796532(identity) interpro:IPR042114|interpro:IPR023168|interpro:IPR003789(GatB/Yqey)|interpro:IPR004413("Glutamyl-tRNA(Gln) amidotransferase B subunit")|interpro:IPR006075(GatB N-terminal region)|interpro:IPR017958|interpro:IPR017959|interpro:IPR018027|refseq:YP_011102.1|refseq:WP_010939171.1|ensemblbacteria:AAS96361(transcript)|ensemblbacteria:DVU_1885(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|entrezgene/locuslink:2793554(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:qL44j0V4vWpB/M5XplDodXtsSAo882 rogid:5dDsK9dmzftNNeagZxDm1pWlmBU882 intact-crc:AB5147F8C153BD3A|rigid:zI5RYGk9l1KY6FlippGYFX+xW34 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DX0 uniprotkb:Q72DX1 intact:EBI-10068337|ensemblbacteria:AAS95289 intact:EBI-10068330|ensemblbacteria:AAS95288 psi-mi:gatc_desvh(display_long)|uniprotkb:DVU_0809(locus name)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short) psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070510|imex:IM-22740-305 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|refseq:YP_010030.1|refseq:WP_010938110.1|ensemblbacteria:AAS95289(transcript)|ensemblbacteria:DVU_0809(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|entrezgene/locuslink:2796532(identity) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928|entrezgene/locuslink:2796531(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:qL44j0V4vWpB/M5XplDodXtsSAo882 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 intact-crc:AB5147F8C153BD3A|rigid:zI5RYGk9l1KY6FlippGYFX+xW34 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DX1 uniprotkb:Q72AV5 intact:EBI-10068330|ensemblbacteria:AAS95288 intact:EBI-10068341|ensemblbacteria:AAS96361 psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:gatb_desvh(display_long)|uniprotkb:DVU_1885(locus name)|uniprotkb:gatB(gene name)|psi-mi:gatB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070544|imex:IM-22740-307 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928|entrezgene/locuslink:2796531(identity) interpro:IPR042114|interpro:IPR023168|interpro:IPR003789(GatB/Yqey)|interpro:IPR004413("Glutamyl-tRNA(Gln) amidotransferase B subunit")|interpro:IPR006075(GatB N-terminal region)|interpro:IPR017958|interpro:IPR017959|interpro:IPR018027|refseq:YP_011102.1|refseq:WP_010939171.1|ensemblbacteria:AAS96361(transcript)|ensemblbacteria:DVU_1885(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|entrezgene/locuslink:2793554(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 rogid:5dDsK9dmzftNNeagZxDm1pWlmBU882 intact-crc:FD26D532E23B500F|rigid:zI5RYGk9l1KY6FlippGYFX+xW34 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DX1 uniprotkb:Q72DX0 intact:EBI-10068330|ensemblbacteria:AAS95288 intact:EBI-10068337|ensemblbacteria:AAS95289 psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:gatc_desvh(display_long)|uniprotkb:DVU_0809(locus name)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070544|imex:IM-22740-307 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928|entrezgene/locuslink:2796531(identity) interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|refseq:YP_010030.1|refseq:WP_010938110.1|ensemblbacteria:AAS95289(transcript)|ensemblbacteria:DVU_0809(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|entrezgene/locuslink:2796532(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 rogid:qL44j0V4vWpB/M5XplDodXtsSAo882 intact-crc:FD26D532E23B500F|rigid:zI5RYGk9l1KY6FlippGYFX+xW34 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E02 uniprotkb:Q72DZ9 intact:EBI-10070589|ensemblbacteria:AAS95257 intact:EBI-10070604|ensemblbacteria:AAS95260 psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:q72dz9_desvh(display_long)|uniprotkb:DVU_0780(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070601|imex:IM-22740-309 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121|entrezgene/locuslink:2794762(identity) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|interpro:IPR028987|refseq:YP_010001.1|ensemblbacteria:AAS95260(transcript)|ensemblbacteria:DVU_0780(gene)|go:"GO:0015078"(proton transmembrane transporter activity)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)")|entrezgene/locuslink:2794765(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.37" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 rogid:iawHw4iYKJBHw2AYajd2/PQMxLU882 intact-crc:0B09A813D99B1F72|rigid:F8iffnjT61itEltVgwAK7LQjQbI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E02 uniprotkb:Q72E04 intact:EBI-10070589|ensemblbacteria:AAS95257 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070601|imex:IM-22740-309 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121|entrezgene/locuslink:2794762(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121|entrezgene/locuslink:2794846(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 intact-crc:0B09A813D99B1F72|rigid:F8iffnjT61itEltVgwAK7LQjQbI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E02 uniprotkb:Q72E03 intact:EBI-10070589|ensemblbacteria:AAS95257 intact:EBI-10070593|ensemblbacteria:AAS95256 psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070601|imex:IM-22740-309 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121|entrezgene/locuslink:2794762(identity) interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.84" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 intact-crc:0B09A813D99B1F72|rigid:F8iffnjT61itEltVgwAK7LQjQbI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DY4 uniprotkb:Q72E38 intact:EBI-10070568|ensemblbacteria:AAS95275 intact:EBI-10070565|ensemblbacteria:AAS95221 psi-mi:q72dy4_desvh(display_long)|uniprotkb:SAICAR synthetase(gene name synonym)|uniprotkb:DVU_0795(locus name)|uniprotkb:purC(gene name)|psi-mi:purC(display_short) psi-mi:q72e38_desvh(display_long)|uniprotkb:DVU_0741(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070572|imex:IM-22740-308 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001636(SAICAR synthetase)|interpro:IPR018236|interpro:IPR028923|refseq:YP_010016.1|refseq:WP_010938096.1|ensemblbacteria:AAS95275(transcript)|ensemblbacteria:DVU_0795(gene)|go:"GO:0004639"(phosphoribosylaminoimidazolesuccinocarboxamide synthase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006189"('de novo' IMP biosynthetic process)|entrezgene/locuslink:2794517(identity) refseq:YP_009962.1|refseq:WP_010938042.1|ensemblbacteria:AAS95221(transcript)|ensemblbacteria:DVU_0741(gene)|entrezgene/locuslink:2795257(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.32" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:dnk2vSUfqLJY/HJ5DF0i1gxJ28E882 rogid:OlqQai5Lzg5j4Bvh9n/5kOY0EUo882 intact-crc:171723CC4B2B7225|rigid:NohjgP/S4tbDyO/WGMHvnyxwBUM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DY4 uniprotkb:P62457 intact:EBI-10070568|ensemblbacteria:AAS95275 intact:EBI-10070561|ensemblbacteria:AAS95276 psi-mi:q72dy4_desvh(display_long)|uniprotkb:SAICAR synthetase(gene name synonym)|uniprotkb:DVU_0795(locus name)|uniprotkb:purC(gene name)|psi-mi:purC(display_short) psi-mi:hisx_desvh(display_long)|uniprotkb:DVU_0796(locus name)|uniprotkb:hisD(gene name)|psi-mi:hisD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070572|imex:IM-22740-308 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001636(SAICAR synthetase)|interpro:IPR018236|interpro:IPR028923|refseq:YP_010016.1|refseq:WP_010938096.1|ensemblbacteria:AAS95275(transcript)|ensemblbacteria:DVU_0795(gene)|go:"GO:0004639"(phosphoribosylaminoimidazolesuccinocarboxamide synthase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006189"('de novo' IMP biosynthetic process)|entrezgene/locuslink:2794517(identity) interpro:IPR001692(Histidinol dehydrogenase)|interpro:IPR012131(Histidinol dehydrogenase, prokaryotic)|interpro:IPR016161(Aldehyde/histidinol dehydrogenase)|interpro:IPR022695|refseq:YP_010017.1|refseq:WP_010938097.1|ensemblbacteria:AAS95276(transcript)|ensemblbacteria:DVU_0796(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0004399"(histidinol dehydrogenase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2794518(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.60" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:dnk2vSUfqLJY/HJ5DF0i1gxJ28E882 rogid:g7HGbqx7a6mG63ZfH/3tXgIDb28882 intact-crc:171723CC4B2B7225|rigid:NohjgP/S4tbDyO/WGMHvnyxwBUM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72E00 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10070642|ensemblbacteria:AAS95259 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:atpf_desvh(display_long)|uniprotkb:"ATP synthase F(0) sector subunit b"(gene name synonym)|uniprotkb:ATPase subunit I(gene name synonym)|uniprotkb:F-type ATPase subunit b(gene name synonym)|uniprotkb:DVU_0779(locus name)|uniprotkb:atpF(gene name)|psi-mi:atpF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070646|imex:IM-22740-311 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|refseq:YP_010000.1|ensemblbacteria:AAS95259(transcript)|ensemblbacteria:DVU_0779(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|entrezgene/locuslink:2794764(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.28" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:Fe7TWpt3JNFER7sbHfhmN5UkamY882 intact-crc:D4E93D5D2514EFA7|rigid:PDMXgnO2wxVqfYNifXD9FVL+Bo4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72DZ9 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10070604|ensemblbacteria:AAS95260 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:q72dz9_desvh(display_long)|uniprotkb:DVU_0780(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070646|imex:IM-22740-311 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|interpro:IPR028987|refseq:YP_010001.1|ensemblbacteria:AAS95260(transcript)|ensemblbacteria:DVU_0780(gene)|go:"GO:0015078"(proton transmembrane transporter activity)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)")|entrezgene/locuslink:2794765(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.64" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:iawHw4iYKJBHw2AYajd2/PQMxLU882 intact-crc:D4E93D5D2514EFA7|rigid:PDMXgnO2wxVqfYNifXD9FVL+Bo4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72E04 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070646|imex:IM-22740-311 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121|entrezgene/locuslink:2794846(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.77" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 intact-crc:D4E93D5D2514EFA7|rigid:PDMXgnO2wxVqfYNifXD9FVL+Bo4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q726V0 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10070649|ensemblbacteria:AAS97477 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:q726v0_desvh(display_long)|uniprotkb:DVU_3006(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070646|imex:IM-22740-311 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR025714|interpro:IPR029044|interpro:IPR029063|refseq:YP_012217.1|refseq:WP_010940265.1|ensemblbacteria:AAS97477(transcript)|ensemblbacteria:DVU_3006(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|entrezgene/locuslink:2793719(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.82" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:mYM7lchB09rIDxmq89XTGcpMboo882 intact-crc:D4E93D5D2514EFA7|rigid:PDMXgnO2wxVqfYNifXD9FVL+Bo4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72E02 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10070589|ensemblbacteria:AAS95257 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070646|imex:IM-22740-311 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121|entrezgene/locuslink:2794762(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.81" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 intact-crc:D4E93D5D2514EFA7|rigid:PDMXgnO2wxVqfYNifXD9FVL+Bo4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E03 uniprotkb:Q72E04 intact:EBI-10070593|ensemblbacteria:AAS95256 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070625|imex:IM-22740-310 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121|entrezgene/locuslink:2794846(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.38" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 intact-crc:2C9BBDB8D54FA292|rigid:hcjY5LNUJFFBn6rbJ2Bpw6sd2RY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E03 uniprotkb:Q72E02 intact:EBI-10070593|ensemblbacteria:AAS95256 intact:EBI-10070589|ensemblbacteria:AAS95257 psi-mi:atpg_desvh(display_long)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym)|uniprotkb:DVU_0776(locus name)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short) psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070625|imex:IM-22740-310 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:YP_009997.1|refseq:WP_010938077.1|ensemblbacteria:AAS95256(transcript)|ensemblbacteria:DVU_0776(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR035968|entrezgene/locuslink:2794847(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121|entrezgene/locuslink:2794762(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.84" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:3ASlzrNtiNJW3tnSptU+pOZP8KM882 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 intact-crc:2C9BBDB8D54FA292|rigid:hcjY5LNUJFFBn6rbJ2Bpw6sd2RY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E08 uniprotkb:Q72DQ3 intact:EBI-10070702|ensemblbacteria:AAS95251 intact:EBI-10070180|ensemblbacteria:AAS95356 psi-mi:q72e08_desvh(display_long)|uniprotkb:DVU_0771(locus name) psi-mi:q72dq3_desvh(display_long)|uniprotkb:rnj(gene name)|psi-mi:rnj(display_short)|uniprotkb:DVU_0876(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070699|imex:IM-22740-313 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002104(Integrase, catalytic core, phage)|interpro:IPR004606(Molybdenum-pterin binding)|interpro:IPR005116(Transport-associated OB, type 1)|interpro:IPR008995(Molybdate/tungstate binding)|interpro:IPR011010(DNA breaking-rejoining enzyme, catalytic core)|interpro:IPR013762(Integrase-like, catalytic core, phage)|refseq:YP_009992.1|refseq:WP_010938072.1|ensemblbacteria:AAS95251(transcript)|ensemblbacteria:DVU_0771(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006310"(DNA recombination)|go:"GO:0015074"(DNA integration)|go:"GO:0015689"(molybdate ion transport)|entrezgene/locuslink:2794842(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR001587(Protein of unknown function UPF0036, conserved site)|interpro:IPR004613(Conserved hypothetical protein MG423)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|refseq:YP_010097.1|interpro:IPR030854|refseq:WP_010938175.1|ensemblbacteria:AAS95356(transcript)|ensemblbacteria:DVU_0876(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0004534"(5'-3' exoribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR036866|interpro:IPR042173|interpro:IPR041636|entrezgene/locuslink:2795130(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.96" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:OplZUjqBbD10nipkAcy/MaSOls0882 rogid:3Iz/fHOOUSOj7o16dcKIxQEu7K0882 intact-crc:3502262473314046|rigid:NbJ6WjOiNjislqBFRlyLaVXap+c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E37 uniprotkb:Q72E27 intact:EBI-10070728|ensemblbacteria:AAS95222 intact:EBI-10070734|ensemblbacteria:AAS95232 psi-mi:q72e37_desvh(display_long)|uniprotkb:DVU_0742(locus name) psi-mi:q72e27_desvh(display_long)|uniprotkb:DVU_0752(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070731|imex:IM-22740-315 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009963.1|refseq:WP_010938043.1|ensemblbacteria:AAS95222(transcript)|ensemblbacteria:DVU_0742(gene)|entrezgene/locuslink:2795258(identity) interpro:IPR001638(Bacterial extracellular solute-binding protein, family 3)|refseq:YP_009973.1|refseq:WP_010938053.1|ensemblbacteria:AAS95232(transcript)|ensemblbacteria:DVU_0752(gene)|entrezgene/locuslink:2794970(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.95" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:FI6IYTeexy5myT+iqAaoAxvR3Ug882 rogid:mjaNEmAJTS6Wm19t0RvVE71Y4IY882 intact-crc:8C57A39D32DA553C|rigid:p/xSAaBHT1xbjNjvO7WfobY2qRQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EZ0 uniprotkb:Q72E47 intact:EBI-10070754|ensemblbacteria:AAS94911 intact:EBI-10070747|ensemblbacteria:AAS95212 psi-mi:q72ez0_desvh(display_long)|uniprotkb:DVU_0428(locus name) psi-mi:syv_desvh(display_long)|uniprotkb:Valyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_0732(locus name)|uniprotkb:valS(gene name)|psi-mi:valS(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070751|imex:IM-22740-316 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007138(Antibiotic biosynthesis monooxygenase)|interpro:IPR011008(Dimeric alpha-beta barrel)|refseq:YP_009652.1|refseq:WP_010937735.1|ensemblbacteria:AAS94911(transcript)|ensemblbacteria:DVU_0428(gene)|entrezgene/locuslink:2794671(identity) interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002303(Valyl-tRNA synthetase, class Ia)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR010978(tRNA-binding arm)|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR019499|refseq:YP_009953.1|interpro:IPR033705|refseq:WP_010938033.1|go:"GO:0005737"(cytoplasm)|go:"GO:0006438"(valyl-tRNA aminoacylation)|ensemblbacteria:AAS95212(transcript)|ensemblbacteria:DVU_0732(gene)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004832"(valine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|interpro:IPR037118|entrezgene/locuslink:2794946(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:OIb8nM6Sf+27ClVw9CgHj1d98E4882 rogid:ihfNZcOhLVvMrzLTZYvqd/vuySE882 intact-crc:EFC429D2265A272B|rigid:lQSzYVhAgxSOePAzGT6Rn5CX/e8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E63 uniprotkb:P61940 intact:EBI-10070770|ensemblbacteria:AAS95196 intact:EBI-10065097|ensemblbacteria:AAS95676 psi-mi:q72e63_desvh(display_long)|uniprotkb:DVU_0716(locus name) psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070767|imex:IM-22740-317 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:YP_009937.1|interpro:IPR030660|refseq:WP_010938017.1|ensemblbacteria:AAS95196(transcript)|ensemblbacteria:DVU_0716(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015658"(branched-chain amino acid transmembrane transporter activity)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|entrezgene/locuslink:2793615(identity) interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467|entrezgene/locuslink:2796655(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:1Ypy0vWSZ7kyVQBqty/4jtsmIVc882 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 intact-crc:0AAE0AC51528A131|rigid:it/U3Om+8nrnX8ewxUmrkc7C88A false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E81 uniprotkb:Q72AZ9 intact:EBI-10070783|ensemblbacteria:AAS95178 intact:EBI-10070789|ensemblbacteria:AAS96317 psi-mi:q72e81_desvh(display_long)|uniprotkb:DVU_0697(locus name) psi-mi:f16pa_desvh(display_long)|uniprotkb:D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1(gene name synonym)|uniprotkb:DVU_1841(locus name)|uniprotkb:fbp(gene name)|psi-mi:fbp(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070786|imex:IM-22740-318 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001538(Mannose-6-phosphate isomerase, type II, C-terminal)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR006375(Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase)|interpro:IPR011051(Cupin, RmlC-type)|interpro:IPR014710(RmlC-like jelly roll fold)|interpro:IPR029044|refseq:YP_009919.1|refseq:WP_010937999.1|ensemblbacteria:AAS95178(transcript)|ensemblbacteria:DVU_0697(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0004475"(mannose-1-phosphate guanylyltransferase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0016853"(isomerase activity)|entrezgene/locuslink:2794448(identity) interpro:IPR033391|interpro:IPR000146(Inositol phosphatase/fructose-1,6-bisphosphatase)|interpro:IPR028343|refseq:YP_011058.1|refseq:WP_010939127.1|ensemblbacteria:AAS96317(transcript)|ensemblbacteria:DVU_1841(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|interpro:IPR044015|entrezgene/locuslink:2796475(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.53" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:JlWqcLs0KhiVS9Nk/6grCg+uFRs882 rogid:M4TLbaLSH8QEk2PR+1+08HJmQoY882 intact-crc:918F573F29F85D7F|rigid:f03TLrVOLnT7IQx93jXDH5lFOdE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E81 uniprotkb:Q72AU9 intact:EBI-10070783|ensemblbacteria:AAS95178 intact:EBI-10068317|ensemblbacteria:AAS96367 psi-mi:q72e81_desvh(display_long)|uniprotkb:DVU_0697(locus name) psi-mi:q72au9_desvh(display_long)|uniprotkb:DVU_1891(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070786|imex:IM-22740-318 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001538(Mannose-6-phosphate isomerase, type II, C-terminal)|interpro:IPR005835(Nucleotidyl transferase)|interpro:IPR006375(Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase)|interpro:IPR011051(Cupin, RmlC-type)|interpro:IPR014710(RmlC-like jelly roll fold)|interpro:IPR029044|refseq:YP_009919.1|refseq:WP_010937999.1|ensemblbacteria:AAS95178(transcript)|ensemblbacteria:DVU_0697(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0004475"(mannose-1-phosphate guanylyltransferase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0016853"(isomerase activity)|entrezgene/locuslink:2794448(identity) interpro:IPR018641|interpro:IPR029044|refseq:YP_011108.1|ensemblbacteria:AAS96367(transcript)|ensemblbacteria:DVU_1891(gene)|entrezgene/locuslink:2794702(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.37" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:JlWqcLs0KhiVS9Nk/6grCg+uFRs882 rogid:XPZ5Aw4EDJt0frQm7v3aeOFQ56E882 intact-crc:918F573F29F85D7F|rigid:f03TLrVOLnT7IQx93jXDH5lFOdE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E84 uniprotkb:Q72E85 intact:EBI-6974672|ensemblbacteria:AAS95175|intact:MINT-8183932 intact:EBI-10070807|ensemblbacteria:AAS95174 psi-mi:qrcb_desvh(display_long)|uniprotkb:qrcB(gene name)|psi-mi:qrcB(display_short)|uniprotkb:Quinone reductase complex subunit B(gene name synonym)|uniprotkb:"Type I cytochrome c3:menaquinone oxidoreductase subunit B"(gene name synonym)|uniprotkb:DVU_0694(locus name) psi-mi:qrcc_desvh(display_long)|uniprotkb:qrcC(gene name)|psi-mi:qrcC(display_short)|uniprotkb:Quinone reductase complex subunit C(gene name synonym)|uniprotkb:"Type I cytochrome c3:menaquinone oxidoreductase subunit C"(gene name synonym)|uniprotkb:DVU_0693(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070810|imex:IM-22740-319 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS95175(transcript)|ensemblbacteria:DVU_0694(gene)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR006311(Twin-arginine translocation pathway signal)|refseq:YP_009916.1|interpro:IPR006657(Molydopterin dinucleotide-binding region)|refseq:WP_010937997.1|entrezgene/locuslink:2793634(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_009915.1|refseq:WP_010937996.1|ensemblbacteria:AAS95174(transcript)|ensemblbacteria:DVU_0693(gene)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793633(identity) psi-mi:"MI:0469"(intact) comment:mint|comment:"Author predicted score: 0.77" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:PYdLc8tPlD4j/Xl5YyQYtlEO9Gc882 rogid:wbzNtmyZ61tQhI3yPTmIOd2kEEA882 intact-crc:05D4149129506BB4|rigid:KIfReFKcgfD1V7uaOSRU+IxVu50 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EB3 uniprotkb:Q72EB4 intact:EBI-10070871|ensemblbacteria:AAS95146 intact:EBI-10067158|ensemblbacteria:AAS95145 psi-mi:q72eb3_desvh(display_long)|uniprotkb:DVU_0665(locus name) psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070868|imex:IM-22740-323 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041854|interpro:IPR034904|interpro:IPR001075(NIF system FeS cluster assembly, NifU, C-terminal)|interpro:IPR002871(NIF system FeS cluster assembly, NifU, N-terminal)|interpro:IPR007419(BFD-like [2Fe-2S]-binding region)|interpro:IPR010238(NIF system FeS cluster assembly, NifU)|interpro:IPR016217(Nitrogen fixation, NifU)|refseq:YP_009887.1|refseq:WP_010937968.1|ensemblbacteria:AAS95146(transcript)|ensemblbacteria:DVU_0665(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009399"(nitrogen fixation)|go:"GO:0016226"(iron-sulfur cluster assembly)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793604(identity) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:CxKzcSdGmA+3Xsei74XQM2yBE2E882 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 intact-crc:A17E25B1225CB3AD|rigid:GdkA6sChMx2m4rxrENS5ElL+OJM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E91 uniprotkb:Q72E92 intact:EBI-10070836|ensemblbacteria:AAS95168 intact:EBI-10070842|ensemblbacteria:AAS95167 psi-mi:q72e91_desvh(display_long)|uniprotkb:DVU_0687(locus name) psi-mi:q72e92_desvh(display_long)|uniprotkb:DVU_0686(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070839|imex:IM-22740-321 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|refseq:YP_009909.1|ensemblbacteria:AAS95168(transcript)|ensemblbacteria:DVU_0687(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2795337(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_009908.1|ensemblbacteria:AAS95167(transcript)|ensemblbacteria:DVU_0686(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795336(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:HUoNa1HVMVM46FD3epBBIjN0uQ4882 rogid:3wuISaLHHNS6iZPCoxa5AXUuCO0882 intact-crc:6F6324A3098CB463|rigid:eh0WZ57XIn7dGyhakZW0V/RWgms false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EB4 uniprotkb:Q729C4 intact:EBI-10067158|ensemblbacteria:AAS95145 intact:EBI-10067155|ensemblbacteria:AAS96900 psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:q729c4_desvh(display_long)|uniprotkb:DVU_2427(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070884|imex:IM-22740-324 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793603(identity) refseq:YP_011640.1|ensemblbacteria:AAS96900(transcript)|ensemblbacteria:DVU_2427(gene)|entrezgene/locuslink:2794368(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 rogid:AAuZ05FpdYBy8r9F3WpZt/Q0NvE882 intact-crc:AD5A557CDB82F4D5|rigid:hUcmtH5QwXkFj6qXAyNC/0PrLQw false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EB4 uniprotkb:Q72EB3 intact:EBI-10067158|ensemblbacteria:AAS95145 intact:EBI-10070871|ensemblbacteria:AAS95146 psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:q72eb3_desvh(display_long)|uniprotkb:DVU_0665(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070884|imex:IM-22740-324 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793603(identity) interpro:IPR041854|interpro:IPR034904|interpro:IPR001075(NIF system FeS cluster assembly, NifU, C-terminal)|interpro:IPR002871(NIF system FeS cluster assembly, NifU, N-terminal)|interpro:IPR007419(BFD-like [2Fe-2S]-binding region)|interpro:IPR010238(NIF system FeS cluster assembly, NifU)|interpro:IPR016217(Nitrogen fixation, NifU)|refseq:YP_009887.1|refseq:WP_010937968.1|ensemblbacteria:AAS95146(transcript)|ensemblbacteria:DVU_0665(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009399"(nitrogen fixation)|go:"GO:0016226"(iron-sulfur cluster assembly)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793604(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 rogid:CxKzcSdGmA+3Xsei74XQM2yBE2E882 intact-crc:AD5A557CDB82F4D5|rigid:hUcmtH5QwXkFj6qXAyNC/0PrLQw false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EC2 uniprotkb:Q725R1 intact:EBI-10070909|ensemblbacteria:AAS95137 intact:EBI-10070901|ensemblbacteria:AAS97832 psi-mi:q72ec2_desvh(display_long)|uniprotkb:DVU_0656(locus name) psi-mi:q725r1_desvh(display_long)|uniprotkb:DVU_3363(locus name)|uniprotkb:sun(gene name)|psi-mi:sun(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070912|imex:IM-22740-325 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937959.1|interpro:IPR005651(Protein of unknown function DUF343)|refseq:YP_009878.1|ensemblbacteria:AAS95137(transcript)|ensemblbacteria:DVU_0656(gene)|entrezgene/locuslink:2794242(identity) interpro:IPR001678("Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p")|interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR023267|interpro:IPR029063|refseq:YP_012572.1|refseq:WP_010940618.1|ensemblbacteria:AAS97832(transcript)|ensemblbacteria:DVU_3363(gene)|go:"GO:0001510"(RNA methylation)|go:"GO:0003723"(RNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008168"(methyltransferase activity)|interpro:IPR035926|entrezgene/locuslink:2795677(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lA5l7h5Yqbb6tkDyKH1a31iRfzY882 rogid:WgJFg0eS2j0sETKJQiaNtDtn6nc882 intact-crc:582C32565D41646C|rigid:vySVxJvofVE8ocXFNEH8uU9dt5I false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EC2 uniprotkb:Q727D9 intact:EBI-10070909|ensemblbacteria:AAS95137 intact:EBI-10070915|ensemblbacteria:AAS97388 psi-mi:q72ec2_desvh(display_long)|uniprotkb:DVU_0656(locus name) psi-mi:prmc_desvh(display_long)|uniprotkb:N5-glutamine methyltransferase PrmC(gene name synonym)|uniprotkb:"Protein-(glutamine-N5) MTase PrmC"(gene name synonym)|uniprotkb:Protein-glutamine N-methyltransferase PrmC(gene name synonym)|uniprotkb:hemK(gene name synonym)|uniprotkb:DVU_2916(locus name)|uniprotkb:prmC(gene name)|psi-mi:prmC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070912|imex:IM-22740-325 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937959.1|interpro:IPR005651(Protein of unknown function DUF343)|refseq:YP_009878.1|ensemblbacteria:AAS95137(transcript)|ensemblbacteria:DVU_0656(gene)|entrezgene/locuslink:2794242(identity) interpro:IPR025714|interpro:IPR004556(Modification methylase HemK)|interpro:IPR019874|interpro:IPR029063|refseq:YP_012128.1|refseq:WP_010940176.1|ensemblbacteria:AAS97388(transcript)|ensemblbacteria:DVU_2916(gene)|go:"GO:0018364"(peptidyl-glutamine methylation)|go:"GO:0036009"(protein-glutamine N-methyltransferase activity)|go:"GO:0102559"("protein-(glutamine-N5) methyltransferase activity")|interpro:IPR040758|entrezgene/locuslink:2794057(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lA5l7h5Yqbb6tkDyKH1a31iRfzY882 rogid:EGtWVtBqEAeqY1+hl+FVL7PGDjc882 intact-crc:582C32565D41646C|rigid:vySVxJvofVE8ocXFNEH8uU9dt5I false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EC2 uniprotkb:Q725J9 intact:EBI-10070909|ensemblbacteria:AAS95137 intact:EBI-10070905|ensemblbacteria:AAS97644 psi-mi:q72ec2_desvh(display_long)|uniprotkb:DVU_0656(locus name) psi-mi:q725j9_desvh(display_long)|uniprotkb:2-methoxy-6-polyprenyl-1,4-benzoquinol methylase(gene name synonym)|uniprotkb:Demethylmenaquinone methyltransferase(gene name synonym)|uniprotkb:DVU_3174(locus name)|uniprotkb:ubiE(gene name)|psi-mi:ubiE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070912|imex:IM-22740-325 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937959.1|interpro:IPR005651(Protein of unknown function DUF343)|refseq:YP_009878.1|ensemblbacteria:AAS95137(transcript)|ensemblbacteria:DVU_0656(gene)|entrezgene/locuslink:2794242(identity) interpro:IPR004033(UbiE/COQ5 methyltransferase)|interpro:IPR023576|interpro:IPR029063|refseq:YP_012384.1|refseq:WP_010940432.1|go:"GO:0043333"(2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity)|go:"GO:0043770"(demethylmenaquinone methyltransferase activity)|go:"GO:0102027"("S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity")|go:"GO:0102094"("S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity")|go:"GO:0102955"("S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity")|ensemblbacteria:AAS97644(transcript)|ensemblbacteria:DVU_3174(gene)|go:"GO:0006744"(ubiquinone biosynthetic process)|go:"GO:0009060"(aerobic respiration)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0032259"(methylation)|entrezgene/locuslink:2793824(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lA5l7h5Yqbb6tkDyKH1a31iRfzY882 rogid:Ja8FmiSTJUD75AEgqsA33VuaICY882 intact-crc:582C32565D41646C|rigid:vySVxJvofVE8ocXFNEH8uU9dt5I false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EF1 uniprotkb:Q72EF2 intact:EBI-10070958|ensemblbacteria:AAS95108 intact:EBI-10070962|ensemblbacteria:AAS95107 psi-mi:q72ef1_desvh(display_long)|uniprotkb:DVU_0627(locus name)|uniprotkb:ptB(gene name)|psi-mi:ptB(display_short) psi-mi:q72ef2_desvh(display_long)|uniprotkb:DVU_0626(locus name)|uniprotkb:ilvN-1(gene name)|psi-mi:ilvN-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070966|imex:IM-22740-327 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR012147(Phosphate acetyl/butyryltransferase)|refseq:YP_009849.1|refseq:WP_010937930.1|ensemblbacteria:AAS95108(transcript)|ensemblbacteria:DVU_0627(gene)|go:"GO:0050182"(phosphate butyryltransferase activity)|entrezgene/locuslink:2796151(identity) interpro:IPR027271|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR004789(Acetolactate synthase, small subunit)|interpro:IPR019455|refseq:YP_009848.1|refseq:WP_010937929.1|ensemblbacteria:AAS95107(transcript)|ensemblbacteria:DVU_0626(gene)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:1990610"(acetolactate synthase regulator activity)|interpro:IPR039557|entrezgene/locuslink:2796150(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:oRRqj3WQRWyE/OrD35tQi/Cs9eQ882 rogid:hTBmiwTFmRnSE8eK3TG3YKPbq3I882 intact-crc:68A958611A9D171D|rigid:e5aDqz/2PXqW4qnhx6tS8HMpURw false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EF8 uniprotkb:Q729Z4 intact:EBI-10070995|ensemblbacteria:AAS95101 intact:EBI-10070992|ensemblbacteria:AAS96676 psi-mi:q72ef8_desvh(display_long)|uniprotkb:DVU_0620(locus name) psi-mi:q729z4_desvh(display_long)|uniprotkb:DVU_2203(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070998|imex:IM-22740-329 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006056(YjgF-like protein)|interpro:IPR006175(Endoribonuclease L-PSP)|refseq:YP_009842.1|refseq:WP_010937923.1|ensemblbacteria:AAS95101(transcript)|ensemblbacteria:DVU_0620(gene)|interpro:IPR035959|entrezgene/locuslink:2794406(identity) interpro:IPR006056(YjgF-like protein)|interpro:IPR006175(Endoribonuclease L-PSP)|interpro:IPR019897|refseq:YP_011416.1|refseq:WP_010939478.1|ensemblbacteria:AAS96676(transcript)|ensemblbacteria:DVU_2203(gene)|interpro:IPR035959|entrezgene/locuslink:2793666(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ubkC6/MrV3k8wC2dlLmktVQu/gM882 rogid:59A6eTH+0mygDZPIwxZPfbHJztU882 intact-crc:BA4122EFB0498429|rigid:vymm3JbnDyLAn4iarJUTGakwkhg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EG8 uniprotkb:Q72EG9 intact:EBI-10071017|ensemblbacteria:AAS95091 intact:EBI-10071014|ensemblbacteria:AAS95090 psi-mi:q72eg8_desvh(display_long)|uniprotkb:DVU_0610(locus name) psi-mi:q72eg9_desvh(display_long)|uniprotkb:DVU_0609(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071011|imex:IM-22740-330 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003399(Mammalian cell entry related)|refseq:YP_009832.1|refseq:WP_010937913.1|ensemblbacteria:AAS95091(transcript)|ensemblbacteria:DVU_0610(gene)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2794096(identity) interpro:IPR005586(Protein of unknown function DUF330)|refseq:YP_009831.1|refseq:WP_010937912.1|ensemblbacteria:AAS95090(transcript)|ensemblbacteria:DVU_0609(gene)|entrezgene/locuslink:2794095(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:4OWmrVVqufHk7l5U41ozEBNPFtQ882 rogid:2lS6vOpqYqeezM4RrZZzCTsGGw0882 intact-crc:EA92EFFE06BFD636|rigid:sAPplZSxkBnoLdMt0GPyOtfW5II false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EI3 uniprotkb:Q728G0 intact:EBI-10071030|ensemblbacteria:AAS95076 intact:EBI-10066697|ensemblbacteria:AAS97115 psi-mi:q72ei3_desvh(display_long)|uniprotkb:DVU_0595(locus name) psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071033|imex:IM-22740-331 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003787(Sulphur relay, DsrE-like protein)|interpro:IPR027396|refseq:YP_009817.1|refseq:WP_010937898.1|ensemblbacteria:AAS95076(transcript)|ensemblbacteria:DVU_0595(gene)|entrezgene/locuslink:2794093(identity) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:kvzohqJkQwjbqKzVl0H3I0VWpVU882 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 intact-crc:A048FF4DACFFE06C|rigid:Yv5FpOhPNeDEJD6TfQOE/6UyA5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EI3 uniprotkb:Q72BU5 intact:EBI-10071030|ensemblbacteria:AAS95076 intact:EBI-10066693|ensemblbacteria:AAS96017 psi-mi:q72ei3_desvh(display_long)|uniprotkb:DVU_0595(locus name) psi-mi:q72bu5_desvh(display_long)|uniprotkb:DVU_1539(locus name)|uniprotkb:glpX(gene name)|psi-mi:glpX(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071033|imex:IM-22740-331 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003787(Sulphur relay, DsrE-like protein)|interpro:IPR027396|refseq:YP_009817.1|refseq:WP_010937898.1|ensemblbacteria:AAS95076(transcript)|ensemblbacteria:DVU_0595(gene)|entrezgene/locuslink:2794093(identity) interpro:IPR004464(GlpX)|refseq:YP_010758.1|refseq:WP_010938831.1|ensemblbacteria:AAS96017(transcript)|ensemblbacteria:DVU_1539(gene)|go:"GO:0006071"(glycerol metabolic process)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2793689(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:kvzohqJkQwjbqKzVl0H3I0VWpVU882 rogid:CT97gy9emJCEZP/QFHye+xB6Ccs882 intact-crc:A048FF4DACFFE06C|rigid:Yv5FpOhPNeDEJD6TfQOE/6UyA5E false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EI6 uniprotkb:Q72ES6 intact:EBI-10071069|ensemblbacteria:AAS95073 intact:EBI-10071066|ensemblbacteria:AAS94975 psi-mi:q72ei6_desvh(display_long)|uniprotkb:DVU_0592(locus name)|uniprotkb:cheW-1(gene name)|psi-mi:cheW-1(display_short) psi-mi:q72es6_desvh(display_long)|uniprotkb:DVU_0493(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071063|imex:IM-22740-333 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002545(CheW-like protein)|refseq:YP_009814.1|refseq:WP_010937895.1|ensemblbacteria:AAS95073(transcript)|ensemblbacteria:DVU_0592(gene)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|interpro:IPR036061|interpro:IPR039315|entrezgene/locuslink:2794090(identity) interpro:IPR014995(Protein of unknown function DUF1844)|refseq:YP_009716.1|refseq:WP_010937799.1|ensemblbacteria:AAS94975(transcript)|ensemblbacteria:DVU_0493(gene)|entrezgene/locuslink:2793707(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:7MpgUVEtdETMNie/chF0Wwb1mKg882 rogid:Zqao7bHispTY59fnE3VX1lv/EOA882 intact-crc:AE69A93C4E5D8DD1|rigid:V8xaGwy223yrOs4it/xBghyce3I false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EJ3 uniprotkb:Q3V893 intact:EBI-10071120|ensemblbacteria:AAS95066 intact:EBI-10065080|ensemblbacteria:AAS94843 psi-mi:q72ej3_desvh(display_long)|uniprotkb:DVU_0585(locus name) psi-mi:q3v893_desvh(display_long)|uniprotkb:DVU_0360(locus name)|uniprotkb:ilvB-1(gene name)|psi-mi:ilvB-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071117|imex:IM-22740-336 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR032875|interpro:IPR003781(CoA-binding)|interpro:IPR016102(Succinyl-CoA synthetase-like)|refseq:YP_009807.1|refseq:WP_010937888.1|ensemblbacteria:AAS95066(transcript)|ensemblbacteria:DVU_0585(gene)|go:"GO:0005524"(ATP binding)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR036291|entrezgene/locuslink:2794162(identity) interpro:IPR000399(TPP-binding enzymes, conserved site)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR012000(Thiamine pyrophosphate enzyme, central region)|interpro:IPR012001(Thiamine pyrophosphate enzyme, N-terminal TPP binding region)|interpro:IPR012846(Acetolactate synthase, large subunit, biosynthetic)|interpro:IPR029035|interpro:IPR029061|refseq:YP_009584.1|refseq:WP_010937667.1|ensemblbacteria:AAS94843(transcript)|ensemblbacteria:DVU_0360(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR039368|entrezgene/locuslink:2793499(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.47" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:YfILvTyhbNgj3pGWdXcO1Jn1EuU882 rogid:lvQXMko7j1aQpMOKdFSyGBI+VUk882 intact-crc:276E0E8A1A09A5E3|rigid:Btu34jOx+0u2YYA5yltVN7BHBA8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EN7 uniprotkb:Q72EJ1 intact:EBI-10071083|ensemblbacteria:AAS95022 intact:EBI-10071089 psi-mi:q72en7_desvh(display_long)|uniprotkb:DVU_0540(locus name) psi-mi:q72ej1_desvh(display_long)|uniprotkb:DVU_0587(locus name)|uniprotkb:fdnG-1(gene name)|psi-mi:fdnG-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071086|imex:IM-22740-334 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR009056(Cytochrome c, monohaem)|interpro:IPR021796|refseq:YP_009763.1|refseq:WP_010937846.1|ensemblbacteria:AAS95022(transcript)|ensemblbacteria:DVU_0540(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016021"(integral component of membrane)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036097|interpro:IPR036890|entrezgene/locuslink:2795577(identity) refseq:WP_010937890.1|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR006443(Formate dehydrogenase, alpha subunit, anaerobic)|interpro:IPR006655(Molybdopterin oxidoreductase, prokaryotic, conserved site)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR019546|interpro:IPR027467|refseq:YP_009809.1|go:"GO:0009055"(electron transfer activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0045333"(cellular respiration)|go:"GO:0046872"(metal ion binding)|go:"GO:0047111"("formate dehydrogenase (cytochrome-c-553) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0008863"("formate dehydrogenase (NAD+) activity")|rcsb pdb:6SDR|rcsb pdb:6SDV|entrezgene/locuslink:2794164(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:q3M9u+/B53O7a3lBlPKb6sver40882 rogid:md8B41DmU2Tvm8hzCcUpawmBIqQ882 intact-crc:1B588EA9A149AE71|rigid:bb0gnTsdx5JEzRJ/t14PKjUWEJU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EJ8 uniprotkb:Q72EV0 intact:EBI-10071136|ensemblbacteria:AAS95061 intact:EBI-10071140|ensemblbacteria:AAS94951 psi-mi:q72ej8_desvh(display_long)|uniprotkb:Molybdenum cofactor biosynthesis protein A(gene name synonym)|uniprotkb:DVU_0580(locus name)|uniprotkb:moaA(gene name)|psi-mi:moaA(display_short) psi-mi:q72ev0_desvh(display_long)|uniprotkb:DVU_0468(locus name)|uniprotkb:trpC(gene name)|psi-mi:trpC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071133|imex:IM-22740-337 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000385(MoaA/nifB/pqqE, iron-sulphur binding, conserved site)|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR010505(Molybdenum cofactor synthesis C-terminal)|interpro:IPR013483(Molybdenum cofactor biosynthesis protein A)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009802.1|refseq:WP_010937883.1|ensemblbacteria:AAS95061(transcript)|ensemblbacteria:DVU_0580(gene)|go:"GO:0005525"(GTP binding)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0019008"(molybdopterin synthase complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0061798"(GTP 3',8'-cyclase activity)|go:"GO:1904047"(S-adenosyl-L-methionine binding)|entrezgene/locuslink:2794565(identity) refseq:WP_010937775.1|interpro:IPR001468(Indole-3-glycerol phosphate synthase, central region)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|refseq:YP_009692.1|ensemblbacteria:AAS94951(transcript)|ensemblbacteria:DVU_0468(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|entrezgene/locuslink:2793609(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:qbppJFBowebIRqm7b4wj/FOyB6k882 rogid:5pzSTXRUajEFmQznXEvuOW7nihs882 intact-crc:C35EF48BD1237390|rigid:X7HzzNktyL3r9i+a+A7qPDBXD1g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR0 uniprotkb:Q72EL2 intact:EBI-10067999|ensemblbacteria:AAS96408 intact:EBI-10071170|ensemblbacteria:AAS95047 psi-mi:kad_desvh(display_long)|uniprotkb:ATP-AMP transphosphorylase(gene name synonym)|uniprotkb:"ATP:AMP phosphotransferase"(gene name synonym)|uniprotkb:Adenylate monophosphate kinase(gene name synonym)|uniprotkb:DVU_1932(locus name)|uniprotkb:adk(gene name)|psi-mi:adk(display_short) psi-mi:q72el2_desvh(display_long)|uniprotkb:DVU_0566(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071167|imex:IM-22740-339 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033690|interpro:IPR000850(Adenylate kinase)|interpro:IPR027417|refseq:YP_011149.1|refseq:WP_010939218.1|ensemblbacteria:AAS96408(transcript)|ensemblbacteria:DVU_1932(gene)|go:"GO:0004017"(adenylate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0044209"(AMP salvage)|entrezgene/locuslink:2795309(identity) interpro:IPR003018(GAF)|interpro:IPR029016|refseq:YP_009788.1|refseq:WP_010937870.1|ensemblbacteria:AAS95047(transcript)|ensemblbacteria:DVU_0566(gene)|entrezgene/locuslink:2795891(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.78" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:noxTpH5A2VF0yy40ILXXCProXn0882 rogid:QaAbABuSDEybh5AJcGp1IaqU5/8882 intact-crc:81612AF57051025F|rigid:WZB9R42YebKk/QZ/4BogUPfShAw false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EM3 uniprotkb:Q72ER3 intact:EBI-10071183|ensemblbacteria:AAS95036 intact:EBI-10071189|ensemblbacteria:AAS94988 psi-mi:q72em3_desvh(display_long)|uniprotkb:DVU_0554(locus name) psi-mi:q72er3_desvh(display_long)|uniprotkb:DVU_0506(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071186|imex:IM-22740-340 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937860.1|interpro:IPR001509(NAD-dependent epimerase/dehydratase)|refseq:YP_009777.1|ensemblbacteria:AAS95036(transcript)|ensemblbacteria:DVU_0554(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR036291|entrezgene/locuslink:2794437(identity) interpro:IPR038763|interpro:IPR001667(Phosphoesterase, RecJ-like)|interpro:IPR003156(Phosphoesterase, DHHA1)|refseq:YP_009729.1|refseq:WP_010937812.1|ensemblbacteria:AAS94988(transcript)|ensemblbacteria:DVU_0506(gene)|go:"GO:0003676"(nucleic acid binding)|entrezgene/locuslink:2793566(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:hgbzjy6uoT6oQgV5XOmNxD3ne6I882 rogid:SfMfJxYxgdzCTVZxnMfId1UHCfA882 intact-crc:F4EDD9622EA43E4D|rigid:If1XNVMXf1w4ZlP2uphUDNiirak false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ES6 uniprotkb:Q72EP4 intact:EBI-10071066|ensemblbacteria:AAS94975 intact:EBI-10071215|ensemblbacteria:AAS95007 psi-mi:q72es6_desvh(display_long)|uniprotkb:DVU_0493(locus name) psi-mi:q72ep4_desvh(display_long)|uniprotkb:DVU_0525(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071218|imex:IM-22740-342 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014995(Protein of unknown function DUF1844)|refseq:YP_009716.1|refseq:WP_010937799.1|ensemblbacteria:AAS94975(transcript)|ensemblbacteria:DVU_0493(gene)|entrezgene/locuslink:2793707(identity) interpro:IPR000835(Bacterial regulatory protein, MarR)|interpro:IPR023187|refseq:YP_009748.1|refseq:WP_010937831.1|ensemblbacteria:AAS95007(transcript)|ensemblbacteria:DVU_0525(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2794891(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.93" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Zqao7bHispTY59fnE3VX1lv/EOA882 rogid:8SRchu38uyxQn6nzyVy9t8rWJpU882 intact-crc:99B164957ED40AB8|rigid:8J3ba18l9JIHmuJelN5JbvbuyxU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EP7 uniprotkb:Q72F08 intact:EBI-10067084|ensemblbacteria:AAS95004 intact:EBI-10071275|ensemblbacteria:AAS94893 psi-mi:fliw_desvh(display_long)|uniprotkb:DVU_0522(locus name)|uniprotkb:fliW(gene name)|psi-mi:fliW(display_short) psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071265|imex:IM-22740-345 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|refseq:YP_009745.1|refseq:WP_010937828.1|ensemblbacteria:AAS95004(transcript)|ensemblbacteria:DVU_0522(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|entrezgene/locuslink:2794804(identity) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:c5C5ClnCJ+W3GJvhTC/v7zqusRE882 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 intact-crc:961CE65D5FDA95AD|rigid:m/PARHjeVmPRiGVNLfPll8BrnK8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EP7 uniprotkb:Q729A8 intact:EBI-10067084|ensemblbacteria:AAS95004 intact:EBI-10067088|ensemblbacteria:AAS96916 psi-mi:fliw_desvh(display_long)|uniprotkb:DVU_0522(locus name)|uniprotkb:fliW(gene name)|psi-mi:fliW(display_short) psi-mi:q729a8_desvh(display_long)|uniprotkb:DVU_2444(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071265|imex:IM-22740-345 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|refseq:YP_009745.1|refseq:WP_010937828.1|ensemblbacteria:AAS95004(transcript)|ensemblbacteria:DVU_0522(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|entrezgene/locuslink:2794804(identity) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011656.1|refseq:WP_010939715.1|ensemblbacteria:AAS96916(transcript)|ensemblbacteria:DVU_2444(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187|entrezgene/locuslink:2796621(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:c5C5ClnCJ+W3GJvhTC/v7zqusRE882 rogid:uLsLwVWIWtrawkoz/HUPrhjN3kc882 intact-crc:961CE65D5FDA95AD|rigid:m/PARHjeVmPRiGVNLfPll8BrnK8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EP7 uniprotkb:Q72EP8 intact:EBI-10067084|ensemblbacteria:AAS95004 intact:EBI-10071268|ensemblbacteria:AAS95003 psi-mi:fliw_desvh(display_long)|uniprotkb:DVU_0522(locus name)|uniprotkb:fliW(gene name)|psi-mi:fliW(display_short) psi-mi:csra_desvh(display_long)|uniprotkb:DVU_0521(locus name)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071265|imex:IM-22740-345 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|refseq:YP_009745.1|refseq:WP_010937828.1|ensemblbacteria:AAS95004(transcript)|ensemblbacteria:DVU_0522(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|entrezgene/locuslink:2794804(identity) interpro:IPR003751(Carbon storage regulator)|refseq:YP_009744.1|refseq:WP_010937827.1|ensemblbacteria:AAS95003(transcript)|ensemblbacteria:DVU_0521(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|interpro:IPR036107|entrezgene/locuslink:2794803(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:c5C5ClnCJ+W3GJvhTC/v7zqusRE882 rogid:AsAjPZrpB/3bwpkPMxPHaE0LU7c882 intact-crc:961CE65D5FDA95AD|rigid:m/PARHjeVmPRiGVNLfPll8BrnK8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EP7 uniprotkb:Q72AB5 intact:EBI-10067084|ensemblbacteria:AAS95004 intact:EBI-10071272|ensemblbacteria:AAS96555 psi-mi:fliw_desvh(display_long)|uniprotkb:DVU_0522(locus name)|uniprotkb:fliW(gene name)|psi-mi:fliW(display_short) psi-mi:q72ab5_desvh(display_long)|uniprotkb:DVU_2082(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071265|imex:IM-22740-345 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|refseq:YP_009745.1|refseq:WP_010937828.1|ensemblbacteria:AAS95004(transcript)|ensemblbacteria:DVU_0522(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|entrezgene/locuslink:2794804(identity) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011295.1|refseq:WP_010939359.1|ensemblbacteria:AAS96555(transcript)|ensemblbacteria:DVU_2082(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187|entrezgene/locuslink:2793536(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:c5C5ClnCJ+W3GJvhTC/v7zqusRE882 rogid:9Qv+5NMFmhdNFWdT0bYugLJEInA882 intact-crc:961CE65D5FDA95AD|rigid:m/PARHjeVmPRiGVNLfPll8BrnK8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EP6 uniprotkb:Q726C4 intact:EBI-10071247|ensemblbacteria:AAS95005 intact:EBI-10071251|ensemblbacteria:AAS97699 psi-mi:q72ep6_desvh(display_long)|uniprotkb:DVU_0523(locus name)|uniprotkb:Negative regulator of flagellin synthesis(gene name synonym)|uniprotkb:flgM(gene name)|psi-mi:flgM(display_short) psi-mi:q726c4_desvh(display_long)|uniprotkb:DVU_3229(locus name)|uniprotkb:fliA(gene name)|psi-mi:fliA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071244|imex:IM-22740-344 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR031316|interpro:IPR007412(Anti-sigma-28 factor, FlgM)|refseq:YP_009746.1|refseq:WP_010937829.1|ensemblbacteria:AAS95005(transcript)|ensemblbacteria:DVU_0523(gene)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR035890|entrezgene/locuslink:2794889(identity) interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|refseq:YP_012439.1|refseq:WP_010940487.1|ensemblbacteria:AAS97699(transcript)|ensemblbacteria:DVU_3229(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0016987"(sigma factor activity)|entrezgene/locuslink:2793879(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.70" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:xcypdsM+0K6kmb6wLipV2NiLW8Q882 rogid:gxhkYW1kRLiGGBqPh2s8xEfQujM882 intact-crc:470D6D7D8CCD3735|rigid:mlXfX5nrPDggA/v73iRrJ/BsOBo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729L4 uniprotkb:Q72ER3 intact:EBI-10071300|ensemblbacteria:AAS96809 intact:EBI-10071189|ensemblbacteria:AAS94988 psi-mi:q729l4_desvh(display_long)|uniprotkb:DVU_2336(locus name) psi-mi:q72er3_desvh(display_long)|uniprotkb:DVU_0506(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071303|imex:IM-22740-346 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR004447(Peptidase S41A, C-terminal protease)|interpro:IPR005151(Peptidase S41)|interpro:IPR029045|refseq:YP_011549.1|refseq:WP_010939609.1|ensemblbacteria:AAS96809(transcript)|ensemblbacteria:DVU_2336(gene)|go:"GO:0008236"(serine-type peptidase activity)|interpro:IPR036034|interpro:IPR041489|entrezgene/locuslink:2793809(identity) interpro:IPR038763|interpro:IPR001667(Phosphoesterase, RecJ-like)|interpro:IPR003156(Phosphoesterase, DHHA1)|refseq:YP_009729.1|refseq:WP_010937812.1|ensemblbacteria:AAS94988(transcript)|ensemblbacteria:DVU_0506(gene)|go:"GO:0003676"(nucleic acid binding)|entrezgene/locuslink:2793566(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:dCMZZoraoIpoy5InI5+zXhqkZEI882 rogid:SfMfJxYxgdzCTVZxnMfId1UHCfA882 intact-crc:5C4773CD864721E5|rigid:KhkTlzOhFgzAsrbumPR0f7eMQiU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ER8 uniprotkb:Q72EV8 intact:EBI-10071336|ensemblbacteria:AAS94983 intact:EBI-10071329|ensemblbacteria:AAS94943 psi-mi:q72er8_desvh(display_long)|uniprotkb:DVU_0501(locus name) psi-mi:q72ev8_desvh(display_long)|uniprotkb:DVU_0460(locus name)|uniprotkb:aroA'(gene name)|psi-mi:aroA'(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071333|imex:IM-22740-348 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009724.1|refseq:WP_010937807.1|ensemblbacteria:AAS94983(transcript)|ensemblbacteria:DVU_0501(gene)|entrezgene/locuslink:2796761(identity) interpro:IPR041720|interpro:IPR002915(Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR010210(Predicted phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009684.1|refseq:WP_010937767.1|ensemblbacteria:AAS94943(transcript)|ensemblbacteria:DVU_0460(gene)|go:"GO:0004332"(fructose-bisphosphate aldolase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016744"(transketolase or transaldolase activity)|go:"GO:0016836"(hydro-lyase activity)|entrezgene/locuslink:2794473(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:hSnPOx4SPjZWTNYAR+XQ6gewsC4882 rogid:jMWmDYStvbIlwq4hmTwf4dNv1ps882 intact-crc:9ACD033E7002DDB6|rigid:hSLI/p7EsSL3zGi3SoCEf14Tk28 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729A3 uniprotkb:Q72ES6 intact:EBI-10071362|ensemblbacteria:AAS96921 intact:EBI-10071066|ensemblbacteria:AAS94975 psi-mi:metk_desvh(display_long)|uniprotkb:MAT(gene name synonym)|uniprotkb:Methionine adenosyltransferase(gene name synonym)|uniprotkb:DVU_2449(locus name)|uniprotkb:metK(gene name)|psi-mi:metK(display_short) psi-mi:q72es6_desvh(display_long)|uniprotkb:DVU_0493(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071366|imex:IM-22740-350 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002133(S-adenosylmethionine synthetase)|interpro:IPR022628|interpro:IPR022629|interpro:IPR022630|interpro:IPR022631|interpro:IPR022636|refseq:YP_011661.1|refseq:WP_010939720.1|ensemblbacteria:AAS96921(transcript)|ensemblbacteria:DVU_2449(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004478"(methionine adenosyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006556"(S-adenosylmethionine biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|entrezgene/locuslink:2796626(identity) interpro:IPR014995(Protein of unknown function DUF1844)|refseq:YP_009716.1|refseq:WP_010937799.1|ensemblbacteria:AAS94975(transcript)|ensemblbacteria:DVU_0493(gene)|entrezgene/locuslink:2793707(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.32" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:UBqFyeh7iE7MyB+DP/nQDl+woeI882 rogid:Zqao7bHispTY59fnE3VX1lv/EOA882 intact-crc:D1E277B1BB9F2D9A|rigid:tm30HRzBp9KWGz6eR74iuNrOvlA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EU8 uniprotkb:Q72EU7 intact:EBI-10071392|ensemblbacteria:AAS94953 intact:EBI-10071399|ensemblbacteria:AAS94954 psi-mi:q72eu8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0470(locus name)|uniprotkb:trpB-2(gene name)|psi-mi:trpB-2(display_short) psi-mi:trpa_desvh(display_long)|uniprotkb:DVU_0471(locus name)|uniprotkb:trpA(gene name)|psi-mi:trpA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071396|imex:IM-22740-352 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009694.1|refseq:WP_010937777.1|ensemblbacteria:AAS94953(transcript)|ensemblbacteria:DVU_0470(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052|entrezgene/locuslink:2793611(identity) interpro:IPR002028(Tryptophan synthase, alpha chain)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR018204|refseq:YP_009695.1|refseq:WP_010937778.1|ensemblbacteria:AAS94954(transcript)|ensemblbacteria:DVU_0471(gene)|go:"GO:0004834"(tryptophan synthase activity)|entrezgene/locuslink:2794713(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:g/enmCvxQAXl3YhQAd4uEJWnxY0882 rogid:/nGrZtsjZuKHECdaoQPXZu7Wc0E882 intact-crc:08B4489D68A1CA86|rigid:9zp1izyerPdVL4t/vNfjUd68xdg false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV3 uniprotkb:Q72BP0 intact:EBI-10071430|ensemblbacteria:AAS94948 intact:EBI-10071426|ensemblbacteria:AAS96072 psi-mi:q72ev3_desvh(display_long)|uniprotkb:DVU_0465(locus name) psi-mi:q72bp0_desvh(display_long)|uniprotkb:DVU_1594(locus name)|uniprotkb:cheA-1(gene name)|psi-mi:cheA-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071437|imex:IM-22740-354 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937772.1|interpro:IPR005801(Anthranilate synthase component I and chorismate binding protein)|interpro:IPR006805(Anthranilate synthase component I, N-terminal)|interpro:IPR015890(Chorismate binding, C-terminal)|interpro:IPR019999|refseq:YP_009689.1|ensemblbacteria:AAS94948(transcript)|ensemblbacteria:DVU_0465(gene)|go:"GO:0009058"(biosynthetic process)|entrezgene/locuslink:2794478(identity) interpro:IPR002545(CheW-like protein)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR004105(Signal transduction histidine kinase, subgroup, homodimeric)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR008207("Signal transduction histidine kinase, phosphotransfer (Hpt) region")|refseq:YP_010813.1|refseq:WP_010938885.1|ensemblbacteria:AAS96072(transcript)|ensemblbacteria:DVU_1594(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006935"(chemotaxis)|interpro:IPR036061|interpro:IPR036097|interpro:IPR036641|interpro:IPR036890|interpro:IPR037006|interpro:IPR037257|entrezgene/locuslink:2796030(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.32" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jsErEG9dxouMNJRysnV/sU5s3kU882 rogid:ZKYrcY/TaUKxb+LAGSnJ47S69Bs882 intact-crc:6B111D57EB2ABF5D|rigid:QuROfccZLSvwPdZ6kv0Uy3PRVcs false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV3 uniprotkb:Q72BN3 intact:EBI-10071430|ensemblbacteria:AAS94948 intact:EBI-10071433|ensemblbacteria:AAS96080 psi-mi:q72ev3_desvh(display_long)|uniprotkb:DVU_0465(locus name) psi-mi:q72bn3_desvh(display_long)|uniprotkb:DVU_1602(locus name)|uniprotkb:clpA(gene name)|psi-mi:clpA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071437|imex:IM-22740-354 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937772.1|interpro:IPR005801(Anthranilate synthase component I and chorismate binding protein)|interpro:IPR006805(Anthranilate synthase component I, N-terminal)|interpro:IPR015890(Chorismate binding, C-terminal)|interpro:IPR019999|refseq:YP_009689.1|ensemblbacteria:AAS94948(transcript)|ensemblbacteria:DVU_0465(gene)|go:"GO:0009058"(biosynthetic process)|entrezgene/locuslink:2794478(identity) interpro:IPR001270(Chaperonin clpA/B)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004176(Clp, N-terminal)|interpro:IPR013461(ATP-dependent Clp protease ATP-binding subunit clpA)|interpro:IPR018368|interpro:IPR019489|interpro:IPR027417|refseq:YP_010821.1|refseq:WP_010938893.1|ensemblbacteria:AAS96080(transcript)|ensemblbacteria:DVU_1602(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0008233"(peptidase activity)|go:"GO:0043335"(protein unfolding)|interpro:IPR036628|interpro:IPR041546|entrezgene/locuslink:2795957(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.46" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jsErEG9dxouMNJRysnV/sU5s3kU882 rogid:q3gjIQEFiQ1uk2MvaLezsOHpgMU882 intact-crc:6B111D57EB2ABF5D|rigid:QuROfccZLSvwPdZ6kv0Uy3PRVcs false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV5 uniprotkb:Q72C62 intact:EBI-10065482|ensemblbacteria:AAS94946 intact:EBI-10069095|ensemblbacteria:AAS95900 psi-mi:q72ev5_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate synthase(gene name synonym)|uniprotkb:DVU_0463(locus name)|uniprotkb:aroA(gene name)|psi-mi:aroA(display_short) psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071454|imex:IM-22740-355 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001986(3-phosphoshikimate 1-carboxyvinyltransferase, core)|interpro:IPR006264(3-phosphoshikimate 1-carboxyvinyltransferase, subgroup)|interpro:IPR013792(RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)|refseq:WP_010937770.1|refseq:YP_009687.1|ensemblbacteria:AAS94946(transcript)|ensemblbacteria:DVU_0463(gene)|go:"GO:0003866"(3-phosphoshikimate 1-carboxyvinyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR036968|entrezgene/locuslink:2794476(identity) interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.94" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:wTgIPqX9LPxWksya/Ts48V+an18882 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 intact-crc:A91F084C1C6DEFA8|rigid:nR2ZnIwZwKodpwtPrucvZjhD7WE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q72EX0 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10066202|ensemblbacteria:AAS94931 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q72ex0_desvh(display_long)|uniprotkb:GDP-D-mannose dehydratase(gene name synonym)|uniprotkb:DVU_0448(locus name)|uniprotkb:gmd(gene name)|psi-mi:gmd(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071467|imex:IM-22740-356 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR006368(GDP-mannose 4,6-dehydratase)|interpro:IPR016040("NAD(P)-binding")|refseq:WP_010937755.1|refseq:YP_009672.1|ensemblbacteria:AAS94931(transcript)|ensemblbacteria:DVU_0448(gene)|go:"GO:0008446"(GDP-mannose 4,6-dehydratase activity)|go:"GO:0019673"(GDP-mannose metabolic process)|go:"GO:0070401"(NADP+ binding)|interpro:IPR036291|entrezgene/locuslink:2796651(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.46" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:16r92wZ0mtFpXMYLNV/s57Z8qvY882 intact-crc:7496F467F828E1D7|rigid:nUtH/3HX/ZwQaKyuqnzD9nczJ8s false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EX7 uniprotkb:Q72EZ0 intact:EBI-10071496|ensemblbacteria:AAS94924 intact:EBI-10070754|ensemblbacteria:AAS94911 psi-mi:adec_desvh(display_long)|uniprotkb:DVU_0441(locus name)|uniprotkb:ade(gene name)|psi-mi:ade(display_short) psi-mi:q72ez0_desvh(display_long)|uniprotkb:DVU_0428(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071493|imex:IM-22740-358 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006679(Adenine deaminase)|interpro:IPR006680(Amidohydrolase 1)|interpro:IPR011059(Metal-dependent hydrolase, composite)|interpro:IPR026912|refseq:YP_009665.1|interpro:IPR032466|refseq:WP_010937748.1|ensemblbacteria:AAS94924(transcript)|ensemblbacteria:DVU_0441(gene)|go:"GO:0000034"(adenine deaminase activity)|go:"GO:0006146"(adenine catabolic process)|entrezgene/locuslink:2796510(identity) interpro:IPR007138(Antibiotic biosynthesis monooxygenase)|interpro:IPR011008(Dimeric alpha-beta barrel)|refseq:YP_009652.1|refseq:WP_010937735.1|ensemblbacteria:AAS94911(transcript)|ensemblbacteria:DVU_0428(gene)|entrezgene/locuslink:2794671(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:1i0UssobF87+J1XtUNiaG5j9YTo882 rogid:OIb8nM6Sf+27ClVw9CgHj1d98E4882 intact-crc:829A08B1B6C71AC5|rigid:CWItprfzqeL1ItjrPnTvOFMAxfc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EY7 uniprotkb:Q72EY8 intact:EBI-10071545|ensemblbacteria:AAS94914 intact:EBI-10071548|ensemblbacteria:AAS94913 psi-mi:q72ey7_desvh(display_long)|uniprotkb:DVU_0431(locus name) psi-mi:q72ey8_desvh(display_long)|uniprotkb:DVU_0430(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071542|imex:IM-22740-361 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR012179([NiFe]-hydrogenase-3-type complex Ech, subunit EchD)|refseq:YP_009655.1|refseq:WP_010937738.1|ensemblbacteria:AAS94914(transcript)|ensemblbacteria:DVU_0431(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|interpro:IPR037232|entrezgene/locuslink:2794674(identity) interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|interpro:IPR029014|refseq:YP_009654.1|refseq:WP_010937737.1|ensemblbacteria:AAS94913(transcript)|ensemblbacteria:DVU_0430(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2794673(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:gE+y9/0679nIOb30XEn6ITtO1AU882 rogid:eyLxgOA8tI+qucvmVtOAAJlSJwo882 intact-crc:43C6CECD33478951|rigid:RleIamE33GuZaj/PkDeyCe0mka4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EY6 uniprotkb:Q72EY9 intact:EBI-10071526|ensemblbacteria:AAS94915 intact:EBI-10071523|ensemblbacteria:AAS94912 psi-mi:q72ey6_desvh(display_long)|uniprotkb:DVU_0432(locus name) psi-mi:q72ey9_desvh(display_long)|uniprotkb:DVU_0429(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071529|imex:IM-22740-360 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006138("NADH dehydrogenase (ubiquinone), 20 kDa subunit")|refseq:YP_009656.1|refseq:WP_010937739.1|ensemblbacteria:AAS94915(transcript)|ensemblbacteria:DVU_0432(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0046872"(metal ion binding)|go:"GO:0048038"(quinone binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2794675(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_009653.1|refseq:WP_010937736.1|ensemblbacteria:AAS94912(transcript)|ensemblbacteria:DVU_0429(gene)|go:"GO:0016020"(membrane)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR010226(NADH-quinone oxidoreductase, chain I)|entrezgene/locuslink:2794672(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.83" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:RSEU1MZrBLdApq3lboTQqEqjOGY882 rogid:KyrCDKjPkH0uRP+Pr8JpX7a42B4882 intact-crc:2128225F1E5EA872|rigid:FNUoBOiv9q18zJJCNs+q+SZYtMo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F01 uniprotkb:Q72DV4 intact:EBI-10071577|ensemblbacteria:AAS94900 intact:EBI-10070493|ensemblbacteria:AAS95305 psi-mi:q72f01_desvh(display_long)|uniprotkb:DVU_0417(locus name)|uniprotkb:speA(gene name)|psi-mi:speA(display_short) psi-mi:seca_desvh(display_long)|uniprotkb:DVU_0825(locus name)|uniprotkb:secA(gene name)|psi-mi:secA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071574|imex:IM-22740-363 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000183(Orn/DAP/Arg decarboxylase 2)|interpro:IPR002985(Arginine decarboxylase)|interpro:IPR009006(Alanine racemase/group IV decarboxylase, C-terminal)|interpro:IPR022644|interpro:IPR022653|interpro:IPR029066|refseq:YP_009641.1|ensemblbacteria:AAS94900(transcript)|ensemblbacteria:DVU_0417(gene)|go:"GO:0006527"(arginine catabolic process)|go:"GO:0008295"(spermidine biosynthetic process)|go:"GO:0008792"(arginine decarboxylase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR040634|interpro:IPR041128|entrezgene/locuslink:2796700(identity) interpro:IPR000185(SecA protein)|interpro:IPR004027(SEC-C motif)|interpro:IPR011115(SecA DEAD-like)|interpro:IPR011116(SecA Wing and Scaffold)|interpro:IPR011130(SecA preprotein cross-linking region)|interpro:IPR014018(SecA motor DEAD)|interpro:IPR020937|interpro:IPR027417|refseq:WP_010938126.1|refseq:YP_010046.1|ensemblbacteria:AAS95305(transcript)|ensemblbacteria:DVU_0825(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0008564"(protein-exporting ATPase activity)|go:"GO:0017038"(protein import)|go:"GO:0046872"(metal ion binding)|go:"GO:0065002"(intracellular protein transmembrane transport)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR044722|interpro:IPR036266|interpro:IPR036670|entrezgene/locuslink:2796172(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.47" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5t9Qil8MLQ/+Hs6JvepbHUciS/c882 rogid:d9MiQ/edCFySP/pJp7NN47vSXF0882 intact-crc:2107B990C25DBA80|rigid:ASFafuMzh/YSHK+kBGZmyxeuuBo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EY8 uniprotkb:Q72EY7 intact:EBI-10071548|ensemblbacteria:AAS94913 intact:EBI-10071545|ensemblbacteria:AAS94914 psi-mi:q72ey8_desvh(display_long)|uniprotkb:DVU_0430(locus name) psi-mi:q72ey7_desvh(display_long)|uniprotkb:DVU_0431(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071561|imex:IM-22740-362 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|interpro:IPR029014|refseq:YP_009654.1|refseq:WP_010937737.1|ensemblbacteria:AAS94913(transcript)|ensemblbacteria:DVU_0430(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2794673(identity) interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR012179([NiFe]-hydrogenase-3-type complex Ech, subunit EchD)|refseq:YP_009655.1|refseq:WP_010937738.1|ensemblbacteria:AAS94914(transcript)|ensemblbacteria:DVU_0431(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|interpro:IPR037232|entrezgene/locuslink:2794674(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:eyLxgOA8tI+qucvmVtOAAJlSJwo882 rogid:gE+y9/0679nIOb30XEn6ITtO1AU882 intact-crc:80FF88ED23083D69|rigid:RleIamE33GuZaj/PkDeyCe0mka4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F06 uniprotkb:Q72E47 intact:EBI-10071594|ensemblbacteria:AAS94895 intact:EBI-10070747|ensemblbacteria:AAS95212 psi-mi:q72f06_desvh(display_long)|uniprotkb:DVU_0412(locus name) psi-mi:syv_desvh(display_long)|uniprotkb:Valyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_0732(locus name)|uniprotkb:valS(gene name)|psi-mi:valS(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071591|imex:IM-22740-364 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003148(Regulator of K+ conductance, N-terminal)|interpro:IPR006037(Regulator of K+ conductance, C-terminal)|refseq:YP_009636.1|refseq:WP_010937719.1|ensemblbacteria:AAS94895(transcript)|ensemblbacteria:DVU_0412(gene)|go:"GO:0006813"(potassium ion transport)|go:"GO:0008324"(cation transmembrane transporter activity)|interpro:IPR036291|interpro:IPR036721|entrezgene/locuslink:2795175(identity) interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002303(Valyl-tRNA synthetase, class Ia)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR010978(tRNA-binding arm)|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR019499|refseq:YP_009953.1|interpro:IPR033705|refseq:WP_010938033.1|go:"GO:0005737"(cytoplasm)|go:"GO:0006438"(valyl-tRNA aminoacylation)|ensemblbacteria:AAS95212(transcript)|ensemblbacteria:DVU_0732(gene)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004832"(valine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|interpro:IPR037118|entrezgene/locuslink:2794946(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.31" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:yKkRps0fmkcsje/d3aYXrnpKbSU882 rogid:ihfNZcOhLVvMrzLTZYvqd/vuySE882 intact-crc:5255DE59C646ED68|rigid:utoNj8iGXoJCMODkl31QoQyShL8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C19 uniprotkb:Q72F07 intact:EBI-10069131|ensemblbacteria:AAS95943 intact:EBI-10069134|ensemblbacteria:AAS94894 psi-mi:q72c19_desvh(display_long)|uniprotkb:DVU_1465(locus name) psi-mi:q72f07_desvh(display_long)|uniprotkb:DVU_0411(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071620|imex:IM-22740-366 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR024542|ensemblbacteria:AAS95943(transcript)|ensemblbacteria:DVU_1465(gene)|entrezgene/locuslink:2794883(identity) interpro:IPR002201(Glycosyl transferase, family 9)|refseq:YP_009635.1|refseq:WP_010937718.1|ensemblbacteria:AAS94894(transcript)|ensemblbacteria:DVU_0411(gene)|go:"GO:0016757"(glycosyltransferase activity)|entrezgene/locuslink:2793712(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:jFXTIvtFwRQLU8ge0uuMaAmRYWs882 rogid:ROZY+6+41AsAkCQGGPndYqv/J7c882 intact-crc:DFCBF31808B0947B|rigid:HgOoNZuZLATg7g+aySPgTZAuCEM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q729N0 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10071633|ensemblbacteria:AAS96793 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:q729n0_desvh(display_long)|uniprotkb:DVU_2320(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071636|imex:IM-22740-367 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) interpro:IPR002830(Carboxylyase-related)|refseq:YP_011533.1|ensemblbacteria:AAS96793(transcript)|ensemblbacteria:DVU_2320(gene)|go:"GO:0016831"(carboxy-lyase activity)|entrezgene/locuslink:2795280(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.44" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:tEXoCvCaoNTr2ow+PSwYDIahyWw882 intact-crc:FD273F7FEC3E4497|rigid:UEmGGfp1YslyQtHeOBgVYG6govg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q72EP7 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10067084|ensemblbacteria:AAS95004 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:fliw_desvh(display_long)|uniprotkb:DVU_0522(locus name)|uniprotkb:fliW(gene name)|psi-mi:fliW(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071636|imex:IM-22740-367 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|refseq:YP_009745.1|refseq:WP_010937828.1|ensemblbacteria:AAS95004(transcript)|ensemblbacteria:DVU_0522(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|entrezgene/locuslink:2794804(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:c5C5ClnCJ+W3GJvhTC/v7zqusRE882 intact-crc:FD273F7FEC3E4497|rigid:UEmGGfp1YslyQtHeOBgVYG6govg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q72EP8 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10071268|ensemblbacteria:AAS95003 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:csra_desvh(display_long)|uniprotkb:DVU_0521(locus name)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071636|imex:IM-22740-367 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) interpro:IPR003751(Carbon storage regulator)|refseq:YP_009744.1|refseq:WP_010937827.1|ensemblbacteria:AAS95003(transcript)|ensemblbacteria:DVU_0521(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|interpro:IPR036107|entrezgene/locuslink:2794803(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:AsAjPZrpB/3bwpkPMxPHaE0LU7c882 intact-crc:FD273F7FEC3E4497|rigid:UEmGGfp1YslyQtHeOBgVYG6govg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q72AB5 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10071272|ensemblbacteria:AAS96555 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:q72ab5_desvh(display_long)|uniprotkb:DVU_2082(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071636|imex:IM-22740-367 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011295.1|refseq:WP_010939359.1|ensemblbacteria:AAS96555(transcript)|ensemblbacteria:DVU_2082(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187|entrezgene/locuslink:2793536(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.44" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:9Qv+5NMFmhdNFWdT0bYugLJEInA882 intact-crc:FD273F7FEC3E4497|rigid:UEmGGfp1YslyQtHeOBgVYG6govg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q729A8 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10067088|ensemblbacteria:AAS96916 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:q729a8_desvh(display_long)|uniprotkb:DVU_2444(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071636|imex:IM-22740-367 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|refseq:YP_011656.1|refseq:WP_010939715.1|ensemblbacteria:AAS96916(transcript)|ensemblbacteria:DVU_2444(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR042187|entrezgene/locuslink:2796621(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.48" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:uLsLwVWIWtrawkoz/HUPrhjN3kc882 intact-crc:FD273F7FEC3E4497|rigid:UEmGGfp1YslyQtHeOBgVYG6govg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F66 uniprotkb:Q72F53 intact:EBI-10071691|ensemblbacteria:AAS94831 intact:EBI-10071694|ensemblbacteria:AAS94845 psi-mi:q72f66_desvh(display_long)|uniprotkb:DVU_0348(locus name) psi-mi:q72f53_desvh(display_long)|uniprotkb:DVU_0362(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071697|imex:IM-22740-370 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR027603|refseq:YP_009572.1|ensemblbacteria:AAS94831(transcript)|ensemblbacteria:DVU_0348(gene)|entrezgene/locuslink:2794788(identity) interpro:IPR001544(Aminotransferase, class IV)|refseq:YP_009586.1|refseq:WP_010937669.1|ensemblbacteria:AAS94845(transcript)|ensemblbacteria:DVU_0362(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR036038|interpro:IPR043131|interpro:IPR043132|entrezgene/locuslink:2793501(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:9J18PIcq5+MnXy6loFbwQKNl1/o882 rogid:0HoiiSHskaO9B+bIPcEf2wXhbD8882 intact-crc:ACDAF6B449AF234E|rigid:EQJs0skBc5VDxh+212iAEOhw/wE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F19 uniprotkb:Q72AX6 intact:EBI-10068421|ensemblbacteria:AAS94879 intact:EBI-10064902|ensemblbacteria:AAS96340 psi-mi:q72f19_desvh(display_long)|uniprotkb:DVU_0396(locus name)|uniprotkb:hup-1(gene name)|psi-mi:hup-1(display_short) psi-mi:q72ax6_desvh(display_long)|uniprotkb:DVU_1864(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071678|imex:IM-22740-369 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_009620.1|interpro:IPR005684(Integration host factor, alpha subunit)|refseq:WP_010937703.1|ensemblbacteria:AAS94879(transcript)|ensemblbacteria:DVU_0396(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006310"(DNA recombination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006417"(regulation of translation)|entrezgene/locuslink:2796538(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_011081.1|refseq:WP_010939150.1|ensemblbacteria:AAS96340(transcript)|ensemblbacteria:DVU_1864(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793646(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:mNwdKUGDFbiz+xsocUEaTpv9PKs882 rogid:n21OwmwqHiyRGMYLOFMYc5upF1E882 intact-crc:F0324FA5589479BA|rigid:jAkf/NyUJH5eLi1K1viBNxhHZW0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F71 uniprotkb:Q72FP0 intact:EBI-10071736|ensemblbacteria:AAS94826 intact:EBI-10071733|ensemblbacteria:AAS94657 psi-mi:q72f71_desvh(display_long)|uniprotkb:DVU_0343(locus name) psi-mi:q72fp0_desvh(display_long)|uniprotkb:DVU_0173(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071730|imex:IM-22740-372 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005000(HpcH/HpaI aldolase)|interpro:IPR015813(Pyruvate/Phosphoenolpyruvate kinase, catalytic core)|refseq:YP_009567.1|refseq:WP_010937650.1|ensemblbacteria:AAS94826(transcript)|ensemblbacteria:DVU_0343(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR040442|entrezgene/locuslink:2796772(identity) refseq:WP_010937484.1|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_009398.1|ensemblbacteria:AAS94657(transcript)|ensemblbacteria:DVU_0173(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:CZ1W4c4uvL8Y9SbNXSUYS0z6P2o882 rogid:HOWDlzWfMJqA2qohHsZrDe3Oqqk882 intact-crc:7ABD2A722CAD413A|rigid:9GWBUDAbbXZ75/qbSdnBsDZYW/w false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F84 uniprotkb:Q726R1 intact:EBI-10071752|ensemblbacteria:AAS94813 intact:EBI-10071749|ensemblbacteria:AAS97516 psi-mi:q72f84_desvh(display_long)|uniprotkb:DVU_0330(locus name) psi-mi:q726r1_desvh(display_long)|uniprotkb:DVU_3045(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071755|imex:IM-22740-373 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR006675(HDIG)|interpro:IPR011006(CheY-like)|interpro:IPR013976(Metal-dependent hydrolase HDOD)|interpro:IPR014626(Signal transduction response regulator, predicted, HD-GYP-like region)|refseq:YP_009554.1|refseq:WP_010937637.1|ensemblbacteria:AAS94813(transcript)|ensemblbacteria:DVU_0330(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|interpro:IPR003607(Metal-dependent phosphohydrolase, HD region)|entrezgene/locuslink:2794497(identity) interpro:IPR000014(PAS)|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR001610(PAC motif)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR011006(CheY-like)|interpro:IPR013655(PAS fold-3)|interpro:IPR013656(PAS fold-4)|refseq:YP_012256.1|refseq:WP_010940304.1|ensemblbacteria:AAS97516(transcript)|ensemblbacteria:DVU_3045(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|interpro:IPR035965|interpro:IPR036097|interpro:IPR036890|entrezgene/locuslink:2796071(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Fik6lpk9PL6QgRao2FxKjNcwVzc882 rogid:gjga/69CPTbquNPJhwrXSmfL3CM882 intact-crc:82FEBFDAB83D06F8|rigid:VD1H/00x5Vxg0NbwIbZdvuMjFns false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F84 uniprotkb:Q729Q8 intact:EBI-10071752|ensemblbacteria:AAS94813 intact:EBI-10067332|ensemblbacteria:AAS96764 psi-mi:q72f84_desvh(display_long)|uniprotkb:DVU_0330(locus name) psi-mi:q729q8_desvh(display_long)|uniprotkb:DVU_2291(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071755|imex:IM-22740-373 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR006675(HDIG)|interpro:IPR011006(CheY-like)|interpro:IPR013976(Metal-dependent hydrolase HDOD)|interpro:IPR014626(Signal transduction response regulator, predicted, HD-GYP-like region)|refseq:YP_009554.1|refseq:WP_010937637.1|ensemblbacteria:AAS94813(transcript)|ensemblbacteria:DVU_0330(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|interpro:IPR003607(Metal-dependent phosphohydrolase, HD region)|entrezgene/locuslink:2794497(identity) interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|refseq:WP_010939566.1|interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR029014|refseq:YP_011504.1|ensemblbacteria:AAS96764(transcript)|ensemblbacteria:DVU_2291(gene)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2795445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.94" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Fik6lpk9PL6QgRao2FxKjNcwVzc882 rogid:Yt5P32YlY9IMEma6vpaTTK4+uUc882 intact-crc:82FEBFDAB83D06F8|rigid:VD1H/00x5Vxg0NbwIbZdvuMjFns false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F63 uniprotkb:Q72EU1 intact:EBI-10071714|ensemblbacteria:AAS94834 intact:EBI-10071710|ensemblbacteria:AAS94960 psi-mi:q72f63_desvh(display_long)|uniprotkb:DVU_0351(locus name) psi-mi:q72eu1_desvh(display_long)|uniprotkb:DVU_0477(locus name)|uniprotkb:icd(gene name)|psi-mi:icd(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071717|imex:IM-22740-371 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR025877|interpro:IPR007235(Glycosyl transferase, family 28, C-terminal)|interpro:IPR029044|refseq:YP_009575.1|refseq:WP_010937658.1|ensemblbacteria:AAS94834(transcript)|ensemblbacteria:DVU_0351(gene)|go:"GO:0016758"(hexosyltransferase activity)|entrezgene/locuslink:2794678(identity) interpro:IPR004439(Isocitrate dehydrogenase NADP-dependent, prokaryotic)|interpro:IPR019818|interpro:IPR024084|refseq:YP_009701.1|refseq:WP_010937784.1|ensemblbacteria:AAS94960(transcript)|ensemblbacteria:DVU_0477(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004450"("isocitrate dehydrogenase (NADP+) activity")|go:"GO:0006097"(glyoxylate cycle)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2793622(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.89" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:LqOYm5ijNo4sx0HsNUHXkzpUF8w882 rogid:bxqqcwkASEzylDjc96GOSWItCYU882 intact-crc:884C7E491903EA64|rigid:cYAcshi56HYPgXPkUIP98sRswoY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR8 uniprotkb:Q72F89 intact:EBI-10068099|ensemblbacteria:AAS96400 intact:EBI-10068092|ensemblbacteria:AAS94808 psi-mi:q72ar8_desvh(display_long)|uniprotkb:DVU_1924(locus name)|uniprotkb:hypC(gene name)|psi-mi:hypC(display_short) psi-mi:q72f89_desvh(display_long)|uniprotkb:DVU_0325(locus name)|uniprotkb:hypD(gene name)|psi-mi:hypD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071772|imex:IM-22740-374 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001109("Hydrogenase expression/formation protein (HUPF/HYPC)")|refseq:YP_011141.1|refseq:WP_010939210.1|ensemblbacteria:AAS96400(transcript)|ensemblbacteria:DVU_1924(gene)|entrezgene/locuslink:2793340(identity) interpro:IPR002780(Hydrogenase formation HypD protein)|refseq:YP_009549.1|refseq:WP_010937632.1|ensemblbacteria:AAS94808(transcript)|ensemblbacteria:DVU_0325(gene)|go:"GO:0046872"(metal ion binding)|interpro:IPR042243|interpro:IPR042244|entrezgene/locuslink:2794327(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:jQ67NXN/qOVP9dkMPrWZC15RQx8882 rogid:1a0X/rE8bnCMqYTDpcVesfb+F2w882 intact-crc:221E85F4FA4C7355|rigid:cbxaderP3AzRW0hCCCLlQB5QeHY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q729X2 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10067430|ensemblbacteria:AAS96698 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071785|imex:IM-22740-375 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 intact-crc:272BE61FA9BBF15D|rigid:V5suBB/mLO+9tjIlRhsue6F/bKg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q729X1 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10067436|ensemblbacteria:AAS96699 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q729x1_desvh(display_long)|uniprotkb:DVU_2226(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071785|imex:IM-22740-375 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_011439.1|refseq:WP_010939501.1|ensemblbacteria:AAS96699(transcript)|ensemblbacteria:DVU_2226(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016874"(ligase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795553(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.95" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:0kkK0a8V2P0I5n8rknJF0yJwqcQ882 intact-crc:272BE61FA9BBF15D|rigid:V5suBB/mLO+9tjIlRhsue6F/bKg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q72FR2 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10071788|ensemblbacteria:AAS94635 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q72fr2_desvh(display_long)|uniprotkb:DVU_0151(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071785|imex:IM-22740-375 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_009376.1|refseq:WP_010937462.1|ensemblbacteria:AAS94635(transcript)|ensemblbacteria:DVU_0151(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2796748(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.73" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:o26b5Fqw8J22PxKv9Rw0ijZTJNo882 intact-crc:272BE61FA9BBF15D|rigid:V5suBB/mLO+9tjIlRhsue6F/bKg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q726L8 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10065674|ensemblbacteria:AAS97559 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q726l8_desvh(display_long)|uniprotkb:DVU_3088(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071785|imex:IM-22740-375 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|refseq:YP_012299.1|refseq:WP_010940347.1|ensemblbacteria:AAS97559(transcript)|ensemblbacteria:DVU_3088(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016787"(hydrolase activity)|entrezgene/locuslink:2796439(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.72" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:ZAuTNjt+wSNLOJ2DiRDzBQWO7QY882 intact-crc:272BE61FA9BBF15D|rigid:V5suBB/mLO+9tjIlRhsue6F/bKg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q72CE6 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10069535|ensemblbacteria:AAS95815 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:lon_desvh(display_long)|uniprotkb:ATP-dependent protease La(gene name synonym)|uniprotkb:DVU_1337(locus name)|uniprotkb:lon(gene name)|psi-mi:lon(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071785|imex:IM-22740-375 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR003111(Peptidase S16, lon N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004815(Peptidase S16, ATP-dependent protease La)|interpro:IPR008268(Peptidase S16, active site)|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR015947(PUA-like)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|interpro:IPR027543|refseq:YP_010556.1|refseq:WP_010938632.1|ensemblbacteria:AAS95815(transcript)|ensemblbacteria:DVU_1337(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0034605"(cellular response to heat)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794585(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:K+5mhLOOcEzqnf49msI210n9o+s882 intact-crc:272BE61FA9BBF15D|rigid:V5suBB/mLO+9tjIlRhsue6F/bKg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q72DE6 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10069542|ensemblbacteria:AAS95463 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q72de6_desvh(display_long)|uniprotkb:DVU_0983(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071785|imex:IM-22740-375 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR003729(Protein of unknown function DUF151)|refseq:YP_010204.1|refseq:WP_010938282.1|ensemblbacteria:AAS95463(transcript)|ensemblbacteria:DVU_0983(gene)|go:"GO:0004518"(nuclease activity)|interpro:IPR036104|entrezgene/locuslink:2793325(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.93" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:lyEmS5ln0s8rv5N6bjV4OQwaYSY882 intact-crc:272BE61FA9BBF15D|rigid:V5suBB/mLO+9tjIlRhsue6F/bKg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q729X3 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10067439|ensemblbacteria:AAS96697 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071785|imex:IM-22740-375 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.97" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 intact-crc:272BE61FA9BBF15D|rigid:V5suBB/mLO+9tjIlRhsue6F/bKg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q72AL0 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10067497|ensemblbacteria:AAS96458 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q72al0_desvh(display_long)|uniprotkb:DVU_1982(locus name)|uniprotkb:rhlE(gene name)|psi-mi:rhlE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071785|imex:IM-22740-375 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014014(RNA helicase, DEAD-box type, Q motif)|interpro:IPR027417|refseq:YP_011199.1|refseq:WP_010939268.1|ensemblbacteria:AAS96458(transcript)|ensemblbacteria:DVU_1982(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0016787"(hydrolase activity)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793788(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:zKmJjhrid6qDgJl5ptCURc+2Jfc882 intact-crc:272BE61FA9BBF15D|rigid:V5suBB/mLO+9tjIlRhsue6F/bKg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F96 uniprotkb:Q72DE6 intact:EBI-10071858|ensemblbacteria:AAS94801 intact:EBI-10069542|ensemblbacteria:AAS95463 psi-mi:q72f96_desvh(display_long)|uniprotkb:DVU_0318(locus name) psi-mi:q72de6_desvh(display_long)|uniprotkb:DVU_0983(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071861|imex:IM-22740-377 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|refseq:YP_009542.1|refseq:WP_010937625.1|ensemblbacteria:AAS94801(transcript)|ensemblbacteria:DVU_0318(gene)|entrezgene/locuslink:2794176(identity) interpro:IPR003729(Protein of unknown function DUF151)|refseq:YP_010204.1|refseq:WP_010938282.1|ensemblbacteria:AAS95463(transcript)|ensemblbacteria:DVU_0983(gene)|go:"GO:0004518"(nuclease activity)|interpro:IPR036104|entrezgene/locuslink:2793325(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.70" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:51Gjsgm+sTN0uG7Br7nNjX2ujKc882 rogid:lyEmS5ln0s8rv5N6bjV4OQwaYSY882 intact-crc:50E78B16A8028A6C|rigid:SD3qsGeGnS8uroRoxXKWY++oWT4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X3 uniprotkb:Q72FB5 intact:EBI-10067439|ensemblbacteria:AAS96697 intact:EBI-10071877|ensemblbacteria:AAS94782 psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:q72fb5_desvh(display_long)|uniprotkb:DVU_0299(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071874|imex:IM-22740-378 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_009523.1|refseq:WP_010937606.1|ensemblbacteria:AAS94782(transcript)|ensemblbacteria:DVU_0299(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2795183(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.79" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 rogid:8tqFEr175OJSos2ldYVTQoDY5kM882 intact-crc:BD386F6BD3434EF9|rigid:3lenlaHy6hJ9UwUjE2I82Hrlmiw false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FF0 uniprotkb:Q72FE8 intact:EBI-10071893|ensemblbacteria:AAS94747 intact:EBI-10071896|ensemblbacteria:AAS94749 psi-mi:q72ff0_desvh(display_long)|uniprotkb:DVU_0264(locus name) psi-mi:q72fe8_desvh(display_long)|uniprotkb:DVU_0266(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071890|imex:IM-22740-379 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_009488.1|refseq:WP_010937573.1|ensemblbacteria:AAS94747(transcript)|ensemblbacteria:DVU_0264(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795006(identity) ensemblbacteria:AAS94749(transcript)|ensemblbacteria:DVU_0266(gene)|interpro:IPR015943(WD40/YVTN repeat-like)|entrezgene/locuslink:2795008(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t19Ou93+B6vQ0rFvwWG5c05wJA8882 rogid:pAQeBO0nB+suC3Z/7B2a1Bna8jc882 intact-crc:99DF698C0A4E1ABE|rigid:LXbXaTJQxabfK449gl2FqBqh9nc false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FP1 uniprotkb:Q72FP0 intact:EBI-10071935|ensemblbacteria:AAS94656 intact:EBI-10071733|ensemblbacteria:AAS94657 psi-mi:q72fp1_desvh(display_long)|uniprotkb:DVU_0172(locus name) psi-mi:q72fp0_desvh(display_long)|uniprotkb:DVU_0173(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071938|imex:IM-22740-382 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_009397.1|refseq:WP_010937483.1|ensemblbacteria:AAS94656(transcript)|ensemblbacteria:DVU_0172(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795602(identity) refseq:WP_010937484.1|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_009398.1|ensemblbacteria:AAS94657(transcript)|ensemblbacteria:DVU_0173(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795603(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:6oB91/fAr4PPRje2nLQv5a1GfNE882 rogid:HOWDlzWfMJqA2qohHsZrDe3Oqqk882 intact-crc:2F565B179FA09048|rigid:w/TsHIIhFmNwe1S7115HxUDTtvM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FF0 uniprotkb:Q72FE8 intact:EBI-10071893|ensemblbacteria:AAS94747 intact:EBI-10071896|ensemblbacteria:AAS94749 psi-mi:q72ff0_desvh(display_long)|uniprotkb:DVU_0264(locus name) psi-mi:q72fe8_desvh(display_long)|uniprotkb:DVU_0266(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071922|imex:IM-22740-381 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_009488.1|refseq:WP_010937573.1|ensemblbacteria:AAS94747(transcript)|ensemblbacteria:DVU_0264(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795006(identity) ensemblbacteria:AAS94749(transcript)|ensemblbacteria:DVU_0266(gene)|interpro:IPR015943(WD40/YVTN repeat-like)|entrezgene/locuslink:2795008(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:t19Ou93+B6vQ0rFvwWG5c05wJA8882 rogid:pAQeBO0nB+suC3Z/7B2a1Bna8jc882 intact-crc:5B6C67046ED013DF|rigid:LXbXaTJQxabfK449gl2FqBqh9nc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA0 uniprotkb:Q72FP4 intact:EBI-10068791|ensemblbacteria:AAS95509 intact:EBI-10071977|ensemblbacteria:AAS94653 psi-mi:his8_desvh(display_long)|uniprotkb:Imidazole acetol-phosphate transaminase(gene name synonym)|uniprotkb:DVU_1029(locus name)|uniprotkb:hisC(gene name)|psi-mi:hisC(display_short) psi-mi:q72fp4_desvh(display_long)|uniprotkb:DVU_0169(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071980|imex:IM-22740-385 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001917(Aminotransferase, class-II, pyridoxal-phosphate binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR005861(Histidinol-phosphate aminotransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_010250.1|refseq:WP_010938328.1|ensemblbacteria:AAS95509(transcript)|ensemblbacteria:DVU_1029(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0004400"(histidinol-phosphate transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794526(identity) interpro:IPR000914(Bacterial extracellular solute-binding protein, family 5)|interpro:IPR023765|refseq:YP_009394.1|interpro:IPR030678|refseq:WP_010937480.1|ensemblbacteria:AAS94653(transcript)|ensemblbacteria:DVU_0169(gene)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|go:"GO:0055085"(transmembrane transport)|interpro:IPR039424|entrezgene/locuslink:2793575(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.42" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:H14oWaNYwas/HBMZFA+aT/uTER4882 rogid:WyrijBmvRbvJHSPskcheUTVmTqM882 intact-crc:FA1854B39C5AB49D|rigid:d4GtK4aEP5X5A5zYg3OgGT3KpN8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FP0 uniprotkb:Q72FP1 intact:EBI-10071733|ensemblbacteria:AAS94657 intact:EBI-10071935|ensemblbacteria:AAS94656 psi-mi:q72fp0_desvh(display_long)|uniprotkb:DVU_0173(locus name) psi-mi:q72fp1_desvh(display_long)|uniprotkb:DVU_0172(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071951|imex:IM-22740-383 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937484.1|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_009398.1|ensemblbacteria:AAS94657(transcript)|ensemblbacteria:DVU_0173(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795603(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_009397.1|refseq:WP_010937483.1|ensemblbacteria:AAS94656(transcript)|ensemblbacteria:DVU_0172(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795602(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:HOWDlzWfMJqA2qohHsZrDe3Oqqk882 rogid:6oB91/fAr4PPRje2nLQv5a1GfNE882 intact-crc:017C3B39F531D22D|rigid:w/TsHIIhFmNwe1S7115HxUDTtvM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726J4 uniprotkb:Q72FQ1 intact:EBI-10065640|ensemblbacteria:AAS97584 intact:EBI-10065635|ensemblbacteria:AAS94646 psi-mi:cara_desvh(display_long)|uniprotkb:Carbamoyl-phosphate synthetase glutamine chain(gene name synonym)|uniprotkb:DVU_3113(locus name)|uniprotkb:carA(gene name)|psi-mi:carA(display_short) psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071993|imex:IM-22740-386 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002474(Carbamoyl phosphate synthase, small subunit, N-terminal)|interpro:IPR006274(Carbamoyl phosphate synthase, small subunit)|interpro:IPR017926|interpro:IPR029062|refseq:YP_012324.1|refseq:WP_010940372.1|ensemblbacteria:DVU_3113(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|ensemblbacteria:AAS97584(transcript)|interpro:IPR035686|interpro:IPR036480|entrezgene/locuslink:2796605(identity) interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914|entrezgene/locuslink:2796778(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:X81Lv9JQcjmM+HsJv1TePNg/3i0882 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 intact-crc:62E75332443D37DA|rigid:Uj0ewrZ5PRS1vHHVQhJ6jpYeUJY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FR2 uniprotkb:Q72F92 intact:EBI-10071788|ensemblbacteria:AAS94635 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:q72fr2_desvh(display_long)|uniprotkb:DVU_0151(locus name) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072006|imex:IM-22740-387 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_009376.1|refseq:WP_010937462.1|ensemblbacteria:AAS94635(transcript)|ensemblbacteria:DVU_0151(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2796748(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.73" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:o26b5Fqw8J22PxKv9Rw0ijZTJNo882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:7D402C8996C8E468|rigid:To/Lcb9K9KraF1f6DzIJthT6YSg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FV8 uniprotkb:Q72FV7 intact:EBI-10072019|ensemblbacteria:AAS94589 intact:EBI-10072022|ensemblbacteria:AAS94590 psi-mi:q72fv8_desvh(display_long)|uniprotkb:DVU_0105(locus name) psi-mi:q72fv7_desvh(display_long)|uniprotkb:DVU_0106(locus name)|uniprotkb:glnP(gene name)|psi-mi:glnP(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072026|imex:IM-22740-388 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:YP_009330.1|interpro:IPR030679|ensemblbacteria:AAS94589(transcript)|ensemblbacteria:DVU_0105(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015424"(ABC-type amino acid transporter activity)|entrezgene/locuslink:2795642(identity) interpro:IPR000515(Binding-protein-dependent transport systems inner membrane component)|interpro:IPR010065(Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine)|refseq:YP_009331.1|refseq:WP_010937417.1|ensemblbacteria:AAS94590(transcript)|ensemblbacteria:DVU_0106(gene)|go:"GO:0006865"(amino acid transport)|go:"GO:0022857"(transmembrane transporter activity)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|interpro:IPR035906|interpro:IPR043429|entrezgene/locuslink:2795643(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.39" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:OEAD9nuCE9Dl1Ki4a+drQcF2Uro882 rogid:VC8ZMoJLbN7jbjpCwKA1LZq7ins882 intact-crc:1E9F360C790ED4C7|rigid:7nd1L/VjHGbVWDEGdpkTGIFQykQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728V7 uniprotkb:Q72FX1 intact:EBI-10072039|ensemblbacteria:AAS96967 intact:EBI-10072045|ensemblbacteria:AAS94576 psi-mi:q728v7_desvh(display_long)|uniprotkb:DVU_2495(locus name) psi-mi:q72fx1_desvh(display_long)|uniprotkb:DVU_0092(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072042|imex:IM-22740-389 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003736(Phenylacetic acid degradation-related protein)|interpro:IPR006683(Thioesterase superfamily)|interpro:IPR029069|refseq:YP_011707.1|refseq:WP_010939765.1|ensemblbacteria:AAS96967(transcript)|ensemblbacteria:DVU_2495(gene)|entrezgene/locuslink:2795463(identity) interpro:IPR000014(PAS)|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR001610(PAC motif)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR013655(PAS fold-3)|interpro:IPR013767(PAS fold)|refseq:YP_009317.1|refseq:WP_010937403.1|ensemblbacteria:AAS94576(transcript)|ensemblbacteria:DVU_0092(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR035965|interpro:IPR036097|interpro:IPR036890|entrezgene/locuslink:2796241(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:GK/+jU073neEuLMw3ZVsr+sq61Y882 rogid:2qWv4RYu11SyabNC0LHrazBfXhY882 intact-crc:D6E3ECC825FDAAED|rigid:WB1Q0ibeg5oy6ZJuND9Pa1NOgCg false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EU8 uniprotkb:Q72FX8 intact:EBI-10071392|ensemblbacteria:AAS94953 intact:EBI-10072062|ensemblbacteria:AAS94569 psi-mi:q72eu8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0470(locus name)|uniprotkb:trpB-2(gene name)|psi-mi:trpB-2(display_short) psi-mi:q72fx8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0085(locus name)|uniprotkb:trpB-1(gene name)|psi-mi:trpB-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072059|imex:IM-22740-390 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009694.1|refseq:WP_010937777.1|ensemblbacteria:AAS94953(transcript)|ensemblbacteria:DVU_0470(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052|entrezgene/locuslink:2793611(identity) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009310.1|refseq:WP_010937396.1|ensemblbacteria:AAS94569(transcript)|ensemblbacteria:DVU_0085(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052|entrezgene/locuslink:2793579(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:g/enmCvxQAXl3YhQAd4uEJWnxY0882 rogid:QG1JuXc3xiLvoPiZ3+VpXwTyp8o882 intact-crc:ADEA5084486C432E|rigid:Vxb6bTXnCQMPbthGvA61SYE2CPs false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725I1 uniprotkb:Q72FZ5 intact:EBI-10072079|ensemblbacteria:AAS97638 intact:EBI-10072083|ensemblbacteria:AAS94552 psi-mi:gsa_desvh(display_long)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym)|uniprotkb:DVU_3168(locus name)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short) psi-mi:q72fz5_desvh(display_long)|uniprotkb:DVU_0068(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072076|imex:IM-22740-391 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_012378.1|refseq:WP_010940426.1|ensemblbacteria:AAS97638(transcript)|ensemblbacteria:DVU_3168(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|entrezgene/locuslink:2795873(identity) interpro:IPR027417|refseq:YP_009293.1|refseq:WP_010937379.1|ensemblbacteria:AAS94552(transcript)|ensemblbacteria:DVU_0068(gene)|entrezgene/locuslink:2796766(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.57" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:favigLRkFM2wUwADh0JCloRp2DQ882 rogid:JkRrCmmOHyVGoSQplT9fy0+y7jM882 intact-crc:A4A8C915A7365823|rigid:/ziOgrxGmMvzsMtfbqp9yVGgZv0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FZ7 uniprotkb:Q72CT0 intact:EBI-10072109|ensemblbacteria:AAS94550 intact:EBI-10065973|ensemblbacteria:AAS95681 psi-mi:q72fz7_desvh(display_long)|uniprotkb:DVU_0066(locus name) psi-mi:glya_desvh(display_long)|uniprotkb:DVU_1203(locus name)|uniprotkb:glyA(gene name)|psi-mi:glyA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072112|imex:IM-22740-393 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002125(CMP/dCMP deaminase, zinc-binding)|interpro:IPR016193(Cytidine deaminase-like)|refseq:YP_009291.1|refseq:WP_010937377.1|ensemblbacteria:AAS94550(transcript)|ensemblbacteria:DVU_0066(gene)|go:"GO:0003824"(catalytic activity)|entrezgene/locuslink:2795213(identity) interpro:IPR001085(Glycine hydroxymethyltransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR019798|refseq:YP_010422.1|refseq:WP_010938499.1|ensemblbacteria:AAS95681(transcript)|ensemblbacteria:DVU_1203(gene)|go:"GO:0004372"(glycine hydroxymethyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019264"(glycine biosynthetic process from serine)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0035999"(tetrahydrofolate interconversion)|interpro:IPR039429|entrezgene/locuslink:2796660(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.93" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:0c9byTY9IX/3LH52cVCRVHzhs3k882 rogid:qvZABnUa4OAh0x1pR2kjrAk4Hrk882 intact-crc:95FE98CD381421FA|rigid:2YUptlEMy0UWUqvMbYP2tlD7B6A false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AX1 uniprotkb:Q72G07 intact:EBI-10072129|ensemblbacteria:AAS96345 intact:EBI-10072125|ensemblbacteria:AAS94540 psi-mi:q72ax1_desvh(display_long)|uniprotkb:DVU_1869(locus name) psi-mi:q72g07_desvh(display_long)|uniprotkb:DVU_0056(locus name)|uniprotkb:cheV-1(gene name)|psi-mi:cheV-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072132|imex:IM-22740-394 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011086.1|refseq:WP_010939155.1|ensemblbacteria:AAS96345(transcript)|ensemblbacteria:DVU_1869(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2794313(identity) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:YP_009281.1|refseq:WP_010937367.1|ensemblbacteria:AAS94540(transcript)|ensemblbacteria:DVU_0056(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|interpro:IPR036061|entrezgene/locuslink:2794179(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.28" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zODmBSiePXYgrHWiAR5ouEjjwzU882 rogid:Yab6MXoWDr2EF29IgOQuoTGOn70882 intact-crc:2ED3A08AF4C39D05|rigid:+NrxW9Y83YhpNcp4SaB6hKHl6xA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72G08 uniprotkb:Q72EB4 intact:EBI-10072158|ensemblbacteria:AAS94539 intact:EBI-10067158|ensemblbacteria:AAS95145 psi-mi:isph_desvh(display_long)|uniprotkb:DVU_0055(locus name)|uniprotkb:ispH(gene name)|psi-mi:ispH(display_short) psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072162|imex:IM-22740-396 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003451(LytB protein)|refseq:YP_009280.1|refseq:WP_010937366.1|ensemblbacteria:AAS94539(transcript)|ensemblbacteria:DVU_0055(gene)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050992"(dimethylallyl diphosphate biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0051745"(4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity)|entrezgene/locuslink:2794178(identity) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.91" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ByPumi3wifO+Jw0OBXZG3SpnqEg882 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 intact-crc:94E7E04467DB59FE|rigid:UwD/bGFu1u48V2hMr/QJZDCvilE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WG3 intact:EBI-10053344 intact:EBI-10072188|ensemblbacteria:AAS94338 - psi-mi:q72wg3_desvh(display_long)|uniprotkb:DVUA0126(locus name) psi-mi:dorf2161(display_short)|psi-mi:EBI-10053344(display_long) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072191|imex:IM-22740-398 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010261(Tir chaperone)|refseq:YP_009166.1|refseq:WP_011176704.1|ensemblbacteria:AAS94338(transcript)|ensemblbacteria:DVUA0126(gene)|go:"GO:0030254"(protein secretion by the type III secretion system)|entrezgene/locuslink:2781523(identity) - psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:QFl4aHSbOFOvUqm3WEEUnp4x7cQ882 rogid:gFoJpy53jMsRooePpzgy94NMCW4882 intact-crc:04AE3E4E41E816D3|rigid:K5+/JH8+TwQ1X6V5whPs7ejnGZg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WH3 uniprotkb:Q72WH5 intact:EBI-10072221|ensemblbacteria:AAS94346 intact:EBI-10072218|ensemblbacteria:AAS94348 psi-mi:q72wh3_desvh(display_long)|uniprotkb:DVUA0116(locus name) psi-mi:q72wh5_desvh(display_long)|uniprotkb:DVUA0114(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072224|imex:IM-22740-400 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011990(Tetratricopeptide-like helical)|refseq:YP_009156.1|refseq:WP_011176694.1|ensemblbacteria:AAS94346(transcript)|ensemblbacteria:DVUA0116(gene)|entrezgene/locuslink:2781476(identity) refseq:YP_009154.1|refseq:WP_011176692.1|ensemblbacteria:AAS94348(transcript)|ensemblbacteria:DVUA0114(gene)|entrezgene/locuslink:2781616(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zJxM1jc7dG4BJwLuvACxSVGZCYU882 rogid:+0spAKjCQnAsVe55AgBEJ7Dfqe8882 intact-crc:C599D5D219BD7C94|rigid:zO8p+Qwm4oSQvP6R/NIbU1fUIwA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WH3 uniprotkb:Q72WH4 intact:EBI-10072221|ensemblbacteria:AAS94346 intact:EBI-10072215|ensemblbacteria:AAS94347 psi-mi:q72wh3_desvh(display_long)|uniprotkb:DVUA0116(locus name) psi-mi:q72wh4_desvh(display_long)|uniprotkb:DVUA0115(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072224|imex:IM-22740-400 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011990(Tetratricopeptide-like helical)|refseq:YP_009156.1|refseq:WP_011176694.1|ensemblbacteria:AAS94346(transcript)|ensemblbacteria:DVUA0116(gene)|entrezgene/locuslink:2781476(identity) interpro:IPR021123|refseq:YP_009155.1|refseq:WP_011176693.1|ensemblbacteria:AAS94347(transcript)|ensemblbacteria:DVUA0115(gene)|go:"GO:0015031"(protein transport)|interpro:IPR037203|entrezgene/locuslink:2781477(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:zJxM1jc7dG4BJwLuvACxSVGZCYU882 rogid:qaPJq/XjMX6LqSj6E7ZDX2GxFAc882 intact-crc:C599D5D219BD7C94|rigid:zO8p+Qwm4oSQvP6R/NIbU1fUIwA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WH5 uniprotkb:Q72WH4 intact:EBI-10072218|ensemblbacteria:AAS94348 intact:EBI-10072215|ensemblbacteria:AAS94347 psi-mi:q72wh5_desvh(display_long)|uniprotkb:DVUA0114(locus name) psi-mi:q72wh4_desvh(display_long)|uniprotkb:DVUA0115(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072241|imex:IM-22740-401 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009154.1|refseq:WP_011176692.1|ensemblbacteria:AAS94348(transcript)|ensemblbacteria:DVUA0114(gene)|entrezgene/locuslink:2781616(identity) interpro:IPR021123|refseq:YP_009155.1|refseq:WP_011176693.1|ensemblbacteria:AAS94347(transcript)|ensemblbacteria:DVUA0115(gene)|go:"GO:0015031"(protein transport)|interpro:IPR037203|entrezgene/locuslink:2781477(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:+0spAKjCQnAsVe55AgBEJ7Dfqe8882 rogid:qaPJq/XjMX6LqSj6E7ZDX2GxFAc882 intact-crc:F259CCCA296688C4|rigid:zO8p+Qwm4oSQvP6R/NIbU1fUIwA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WH5 uniprotkb:Q72WH3 intact:EBI-10072218|ensemblbacteria:AAS94348 intact:EBI-10072221|ensemblbacteria:AAS94346 psi-mi:q72wh5_desvh(display_long)|uniprotkb:DVUA0114(locus name) psi-mi:q72wh3_desvh(display_long)|uniprotkb:DVUA0116(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072241|imex:IM-22740-401 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009154.1|refseq:WP_011176692.1|ensemblbacteria:AAS94348(transcript)|ensemblbacteria:DVUA0114(gene)|entrezgene/locuslink:2781616(identity) interpro:IPR011990(Tetratricopeptide-like helical)|refseq:YP_009156.1|refseq:WP_011176694.1|ensemblbacteria:AAS94346(transcript)|ensemblbacteria:DVUA0116(gene)|entrezgene/locuslink:2781476(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:+0spAKjCQnAsVe55AgBEJ7Dfqe8882 rogid:zJxM1jc7dG4BJwLuvACxSVGZCYU882 intact-crc:F259CCCA296688C4|rigid:zO8p+Qwm4oSQvP6R/NIbU1fUIwA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WH8 uniprotkb:Q72WI3 intact:EBI-10072281|ensemblbacteria:AAS94351 intact:EBI-10072284|ensemblbacteria:AAS94355 psi-mi:q72wh8_desvh(display_long)|uniprotkb:DVUA0111(locus name) psi-mi:q72wi3_desvh(display_long)|uniprotkb:DVUA0106(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072275|imex:IM-22740-403 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009151.1|ensemblbacteria:AAS94351(transcript)|ensemblbacteria:DVUA0111(gene)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2781619(identity) interpro:IPR010812(Hypersensitivity response secretion HrpJ)|interpro:IPR013351(Type III secretion system effector delivery regulator TyeA)|interpro:IPR013401(Type III secretion regulator, YopN/LcrE/InvE/MxiC)|interpro:IPR015144(TyeA)|refseq:YP_009146.1|refseq:WP_011176684.1|ensemblbacteria:AAS94355(transcript)|ensemblbacteria:DVUA0106(gene)|go:"GO:0009986"(cell surface)|go:"GO:0019867"(outer membrane)|go:"GO:0030254"(protein secretion by the type III secretion system)|go:"GO:0050709"(negative regulation of protein secretion)|interpro:IPR038347|entrezgene/locuslink:2781592(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lY/mhcbt9DlhHZgNpN87f3nQlnU882 rogid:AIS3OAkJBUHeiwmxL25TW8Zehac882 intact-crc:A063D5DA870FAA80|rigid:dbmFJsnIo6oYoHQzkUMIP+ElXf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WH8 uniprotkb:Q72WI4 intact:EBI-10072281|ensemblbacteria:AAS94351 intact:EBI-10072278|ensemblbacteria:AAS94480 psi-mi:q72wh8_desvh(display_long)|uniprotkb:DVUA0111(locus name) psi-mi:q72wi4_desvh(display_long)|uniprotkb:DVUA0105(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072275|imex:IM-22740-403 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009151.1|ensemblbacteria:AAS94351(transcript)|ensemblbacteria:DVUA0111(gene)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2781619(identity) interpro:IPR012673(Type III secretion system chaperone SycN)|refseq:YP_009145.1|refseq:WP_011176683.1|ensemblbacteria:AAS94480(transcript)|ensemblbacteria:DVUA0105(gene)|go:"GO:0009306"(protein secretion)|entrezgene/locuslink:2781488(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:lY/mhcbt9DlhHZgNpN87f3nQlnU882 rogid:bisaqQ/I5kFOM9/CgIym7I7vrvU882 intact-crc:A063D5DA870FAA80|rigid:dbmFJsnIo6oYoHQzkUMIP+ElXf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WI1 intact:EBI-10053342 intact:EBI-10072314|ensemblbacteria:AAS94353 - psi-mi:q72wi1_desvh(display_long)|uniprotkb:DVUA0108(locus name) psi-mi:dorf2077(display_short)|psi-mi:EBI-10053342(display_long) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072317|imex:IM-22740-405 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_014524683.1|ensemblbacteria:AAS94353(transcript)|ensemblbacteria:DVUA0108(gene)|entrezgene/locuslink:2781590(identity) - psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:x1U0z0EIqjwl8geJiqjr4EuKlfs882 rogid:50waC326XpAmdCMT5a4z9QGN0iw882 intact-crc:19D4C23FA5658657|rigid:gGi9Fgj/RvkbgGHd4mFxT4gMgCA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WI3 uniprotkb:Q72WH8 intact:EBI-10072284|ensemblbacteria:AAS94355 intact:EBI-10072281|ensemblbacteria:AAS94351 psi-mi:q72wi3_desvh(display_long)|uniprotkb:DVUA0106(locus name) psi-mi:q72wh8_desvh(display_long)|uniprotkb:DVUA0111(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072329|imex:IM-22740-406 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010812(Hypersensitivity response secretion HrpJ)|interpro:IPR013351(Type III secretion system effector delivery regulator TyeA)|interpro:IPR013401(Type III secretion regulator, YopN/LcrE/InvE/MxiC)|interpro:IPR015144(TyeA)|refseq:YP_009146.1|refseq:WP_011176684.1|ensemblbacteria:AAS94355(transcript)|ensemblbacteria:DVUA0106(gene)|go:"GO:0009986"(cell surface)|go:"GO:0019867"(outer membrane)|go:"GO:0030254"(protein secretion by the type III secretion system)|go:"GO:0050709"(negative regulation of protein secretion)|interpro:IPR038347|entrezgene/locuslink:2781592(identity) refseq:YP_009151.1|ensemblbacteria:AAS94351(transcript)|ensemblbacteria:DVUA0111(gene)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2781619(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:AIS3OAkJBUHeiwmxL25TW8Zehac882 rogid:lY/mhcbt9DlhHZgNpN87f3nQlnU882 intact-crc:CEFEF61836BC63A1|rigid:dbmFJsnIo6oYoHQzkUMIP+ElXf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WI3 uniprotkb:Q72WI4 intact:EBI-10072284|ensemblbacteria:AAS94355 intact:EBI-10072278|ensemblbacteria:AAS94480 psi-mi:q72wi3_desvh(display_long)|uniprotkb:DVUA0106(locus name) psi-mi:q72wi4_desvh(display_long)|uniprotkb:DVUA0105(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072329|imex:IM-22740-406 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010812(Hypersensitivity response secretion HrpJ)|interpro:IPR013351(Type III secretion system effector delivery regulator TyeA)|interpro:IPR013401(Type III secretion regulator, YopN/LcrE/InvE/MxiC)|interpro:IPR015144(TyeA)|refseq:YP_009146.1|refseq:WP_011176684.1|ensemblbacteria:AAS94355(transcript)|ensemblbacteria:DVUA0106(gene)|go:"GO:0009986"(cell surface)|go:"GO:0019867"(outer membrane)|go:"GO:0030254"(protein secretion by the type III secretion system)|go:"GO:0050709"(negative regulation of protein secretion)|interpro:IPR038347|entrezgene/locuslink:2781592(identity) interpro:IPR012673(Type III secretion system chaperone SycN)|refseq:YP_009145.1|refseq:WP_011176683.1|ensemblbacteria:AAS94480(transcript)|ensemblbacteria:DVUA0105(gene)|go:"GO:0009306"(protein secretion)|entrezgene/locuslink:2781488(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:AIS3OAkJBUHeiwmxL25TW8Zehac882 rogid:bisaqQ/I5kFOM9/CgIym7I7vrvU882 intact-crc:CEFEF61836BC63A1|rigid:dbmFJsnIo6oYoHQzkUMIP+ElXf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WI4 uniprotkb:Q72WI3 intact:EBI-10072278|ensemblbacteria:AAS94480 intact:EBI-10072284|ensemblbacteria:AAS94355 psi-mi:q72wi4_desvh(display_long)|uniprotkb:DVUA0105(locus name) psi-mi:q72wi3_desvh(display_long)|uniprotkb:DVUA0106(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072346|imex:IM-22740-407 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012673(Type III secretion system chaperone SycN)|refseq:YP_009145.1|refseq:WP_011176683.1|ensemblbacteria:AAS94480(transcript)|ensemblbacteria:DVUA0105(gene)|go:"GO:0009306"(protein secretion)|entrezgene/locuslink:2781488(identity) interpro:IPR010812(Hypersensitivity response secretion HrpJ)|interpro:IPR013351(Type III secretion system effector delivery regulator TyeA)|interpro:IPR013401(Type III secretion regulator, YopN/LcrE/InvE/MxiC)|interpro:IPR015144(TyeA)|refseq:YP_009146.1|refseq:WP_011176684.1|ensemblbacteria:AAS94355(transcript)|ensemblbacteria:DVUA0106(gene)|go:"GO:0009986"(cell surface)|go:"GO:0019867"(outer membrane)|go:"GO:0030254"(protein secretion by the type III secretion system)|go:"GO:0050709"(negative regulation of protein secretion)|interpro:IPR038347|entrezgene/locuslink:2781592(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bisaqQ/I5kFOM9/CgIym7I7vrvU882 rogid:AIS3OAkJBUHeiwmxL25TW8Zehac882 intact-crc:178B9AAEB73D0731|rigid:dbmFJsnIo6oYoHQzkUMIP+ElXf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WI4 uniprotkb:Q72WH8 intact:EBI-10072278|ensemblbacteria:AAS94480 intact:EBI-10072281|ensemblbacteria:AAS94351 psi-mi:q72wi4_desvh(display_long)|uniprotkb:DVUA0105(locus name) psi-mi:q72wh8_desvh(display_long)|uniprotkb:DVUA0111(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072346|imex:IM-22740-407 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012673(Type III secretion system chaperone SycN)|refseq:YP_009145.1|refseq:WP_011176683.1|ensemblbacteria:AAS94480(transcript)|ensemblbacteria:DVUA0105(gene)|go:"GO:0009306"(protein secretion)|entrezgene/locuslink:2781488(identity) refseq:YP_009151.1|ensemblbacteria:AAS94351(transcript)|ensemblbacteria:DVUA0111(gene)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2781619(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:bisaqQ/I5kFOM9/CgIym7I7vrvU882 rogid:lY/mhcbt9DlhHZgNpN87f3nQlnU882 intact-crc:178B9AAEB73D0731|rigid:dbmFJsnIo6oYoHQzkUMIP+ElXf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WL8 uniprotkb:Q72WL7 intact:EBI-10072380|ensemblbacteria:AAS94384 intact:EBI-10072383|ensemblbacteria:AAS94383 psi-mi:q72wl8_desvh(display_long)|uniprotkb:DVUA0071(locus name) psi-mi:q72wl7_desvh(display_long)|uniprotkb:DVUA0072(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072386|imex:IM-22740-409 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001173(Glycosyl transferase, family 2)|interpro:IPR001296(Glycosyl transferase, group 1)|interpro:IPR029044|refseq:YP_009111.1|refseq:WP_011176649.1|ensemblbacteria:AAS94384(transcript)|ensemblbacteria:DVUA0071(gene)|go:"GO:0016757"(glycosyltransferase activity)|entrezgene/locuslink:2781607(identity) interpro:IPR028098|refseq:YP_009112.1|refseq:WP_011176650.1|ensemblbacteria:AAS94383(transcript)|ensemblbacteria:DVUA0072(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2781606(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.46" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:g1VCFvGk4tLfYHfdrEHFxVnW/nc882 rogid:7eN0G2vCy8+J3s86wUMVb6RMfVI882 intact-crc:90E54AD58D5D1858|rigid:5rEbCHKUe8r5N+PR/Z7gxWHJXZ0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WR7 uniprotkb:Q72WR8 intact:EBI-10072402|ensemblbacteria:AAS94428 intact:EBI-10072399|ensemblbacteria:AAS94429 psi-mi:q72wr7_desvh(display_long)|uniprotkb:DVUA0022(locus name) psi-mi:q72wr8_desvh(display_long)|uniprotkb:DVUA0021(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072405|imex:IM-22740-410 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:YP_009062.1|refseq:WP_011176600.1|ensemblbacteria:AAS94428(transcript)|ensemblbacteria:DVUA0022(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|interpro:IPR017911|entrezgene/locuslink:2781541(identity) refseq:YP_009061.1|interpro:IPR032317|refseq:WP_011176599.1|ensemblbacteria:AAS94429(transcript)|ensemblbacteria:DVUA0021(gene)|entrezgene/locuslink:2781542(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.97" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ZoWCuL9AMEVvIIlSHf+EgKn6bfA882 rogid:BOUdevJQmhrbSbQFMPjywuuGUOw882 intact-crc:1D036CD63ED761FC|rigid:C8ICYI5vJ2pSR9l+VcUIone6fSk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45574 uniprotkb:P45573 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064851|imex:IM-22740-4 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072|entrezgene/locuslink:2796326(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.90" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+5zB49by4Md3smwTEj+tXy138ms882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:647E5CB12979CDC0|rigid:5DMuHpXg0SnoEdGLu0hnq96u0OI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45574 uniprotkb:P45575 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064851|imex:IM-22740-4 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+5zB49by4Md3smwTEj+tXy138ms882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:647E5CB12979CDC0|rigid:5DMuHpXg0SnoEdGLu0hnq96u0OI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P45575 uniprotkb:P45574 intact:EBI-9016987|ensemblbacteria:AAS94886 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064885|imex:IM-22740-6 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 intact-crc:57AFA45B241B4E7A|rigid:SQ1PqtvvBDqV1trnkkcP8Mc9QD8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P62035 uniprotkb:Q72BM5 intact:EBI-10064948|ensemblbacteria:AAS96732 intact:EBI-10064938|ensemblbacteria:AAS96088 psi-mi:y2259_desvh(display_long)|uniprotkb:DVU_2259(locus name) psi-mi:q72bm5_desvh(display_long)|uniprotkb:"NAD(+) synthase [glutamine-hydrolyzing]"(gene name synonym)|uniprotkb:DVU_1610(locus name)|uniprotkb:nadE(gene name)|psi-mi:nadE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064965|imex:IM-22740-10 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|refseq:YP_011472.1|refseq:WP_010939534.1|ensemblbacteria:AAS96732(transcript)|ensemblbacteria:DVU_2259(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|entrezgene/locuslink:2794081(identity) interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|interpro:IPR003694(NAD+ synthase)|interpro:IPR014445("Glutamine-dependent NAD(+) synthetase, GAT region")|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR022310|refseq:YP_010829.1|refseq:WP_010938901.1|ensemblbacteria:AAS96088(transcript)|ensemblbacteria:DVU_1610(gene)|go:"GO:0003952"("NAD+ synthase (glutamine-hydrolyzing) activity")|go:"GO:0004359"(glutaminase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008795"(NAD+ synthase activity)|go:"GO:0009435"(NAD biosynthetic process)|interpro:IPR036526|entrezgene/locuslink:2796063(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:vwq31bMVKWxbxjQkLoWk21tInLI882 rogid:k4s4BfpX6SHtSSy2NSA4EAO8e6w882 intact-crc:5D981AA94135A319|rigid:HMjXHW1ogO2lzKGWFS0pos53MTo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:P61779 uniprotkb:P62450 intact:EBI-10064985|ensemblbacteria:AAS94768 intact:EBI-10064978|ensemblbacteria:AAS94769 psi-mi:his5_desvh(display_long)|uniprotkb:IGP synthase subunit HisH(gene name synonym)|uniprotkb:ImGP synthase subunit HisH(gene name synonym)|uniprotkb:DVU_0285(locus name)|uniprotkb:hisH(gene name)|psi-mi:hisH(display_short)|uniprotkb:IGP synthase glutaminase subunit(gene name synonym) psi-mi:his6_desvh(display_long)|uniprotkb:IGP synthase cyclase subunit(gene name synonym)|uniprotkb:IGP synthase subunit HisF(gene name synonym)|uniprotkb:ImGP synthase subunit HisF(gene name synonym)|uniprotkb:DVU_0286(locus name)|uniprotkb:hisF(gene name)|psi-mi:hisF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10064999|imex:IM-22740-12 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010139(Imidazole glycerol phosphate synthase, subunit H)|interpro:IPR017926|interpro:IPR029062|refseq:WP_010937594.1|refseq:YP_009509.1|ensemblbacteria:AAS94768(transcript)|ensemblbacteria:DVU_0285(gene)|go:"GO:0000107"(imidazoleglycerol-phosphate synthase activity)|go:"GO:0004359"(glutaminase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0000105"(histidine biosynthetic process)|entrezgene/locuslink:2796695(identity) interpro:IPR004651(Histidine biosynthesis, HisF)|interpro:IPR006062(Histidine biosynthesis)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009510.1|refseq:WP_010937595.1|ensemblbacteria:AAS94769(transcript)|ensemblbacteria:DVU_0286(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0000107"(imidazoleglycerol-phosphate synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0016829"(lyase activity)|entrezgene/locuslink:2793492(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:pkkcUYckOQc+xrA/m1VOG/2gNgM882 rogid:4xHW6/vARu+RwFf9UnBK9t2kzpI882 intact-crc:A7FA0C9FD4FE684A|rigid:LEBuvdokMAtzZhpTep8V3HNN3lk false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q46582 uniprotkb:P61940 intact:EBI-10065101|ensemblbacteria:AAS94887 intact:EBI-10065097|ensemblbacteria:AAS95676 psi-mi:dsvd_desvh(display_long)|uniprotkb:DVU_0404(locus name)|uniprotkb:dsvD(gene name)|psi-mi:dsvD(display_short) psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065123|imex:IM-22740-18 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014793(Dissimilatory sulphite reductase D)|rcsb pdb:1UCR|rcsb pdb:1WQ2|refseq:YP_009628.1|refseq:WP_010937711.1|ensemblbacteria:AAS94887(transcript)|ensemblbacteria:DVU_0404(gene)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2796154(identity) interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467|entrezgene/locuslink:2796655(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.51" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:CJDKHCTpavafrUtO7AKyHaPjbvE882 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 intact-crc:370E45811C31A35B|rigid:Rfs2qu+YeSMxmyyxbl42DoocptI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q46582 uniprotkb:P45574 intact:EBI-10065101|ensemblbacteria:AAS94887 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:dsvd_desvh(display_long)|uniprotkb:DVU_0404(locus name)|uniprotkb:dsvD(gene name)|psi-mi:dsvD(display_short) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065123|imex:IM-22740-18 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014793(Dissimilatory sulphite reductase D)|rcsb pdb:1UCR|rcsb pdb:1WQ2|refseq:YP_009628.1|refseq:WP_010937711.1|ensemblbacteria:AAS94887(transcript)|ensemblbacteria:DVU_0404(gene)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2796154(identity) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.42" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:CJDKHCTpavafrUtO7AKyHaPjbvE882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 intact-crc:370E45811C31A35B|rigid:Rfs2qu+YeSMxmyyxbl42DoocptI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q46582 uniprotkb:P45575 intact:EBI-10065101|ensemblbacteria:AAS94887 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:dsvd_desvh(display_long)|uniprotkb:DVU_0404(locus name)|uniprotkb:dsvD(gene name)|psi-mi:dsvD(display_short) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065123|imex:IM-22740-18 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR014793(Dissimilatory sulphite reductase D)|rcsb pdb:1UCR|rcsb pdb:1WQ2|refseq:YP_009628.1|refseq:WP_010937711.1|ensemblbacteria:AAS94887(transcript)|ensemblbacteria:DVU_0404(gene)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2796154(identity) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.70" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:CJDKHCTpavafrUtO7AKyHaPjbvE882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:370E45811C31A35B|rigid:Rfs2qu+YeSMxmyyxbl42DoocptI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726E7 uniprotkb:Q725M8 intact:EBI-10065191|ensemblbacteria:AAS97676 intact:EBI-10065188|ensemblbacteria:AAS97711 psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:q725m8_desvh(display_long)|uniprotkb:DVU_3241(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065204|imex:IM-22740-22 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) interpro:IPR035107|interpro:IPR011063(PP-loop)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_012451.1|refseq:WP_010940499.1|ensemblbacteria:AAS97711(transcript)|ensemblbacteria:DVU_3241(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0016740"(transferase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793891(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 rogid:T1BarfzGnuLRPkvxEYdwsgo3How882 intact-crc:665F25492B5F02DA|rigid:kErhSymUkUzQqf4ph6uKWqSV4X8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S6 uniprotkb:Q725S5 intact:EBI-10065263|ensemblbacteria:AAS97817 intact:EBI-10065269|ensemblbacteria:AAS97818 psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:q725s5_desvh(display_long)|uniprotkb:DVU_3349(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065311|imex:IM-22740-27 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2796360(identity) interpro:IPR033412|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|refseq:YP_012558.1|refseq:WP_010940605.1|go:"GO:0016491"(oxidoreductase activity)|ensemblbacteria:AAS97818(transcript)|ensemblbacteria:DVU_3349(gene)|entrezgene/locuslink:2796361(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 rogid:B9/pfTeEbS+8jOfuzf66hNvqUAY882 intact-crc:E48A7903B56F4D79|rigid:REDnJICNDTQ/wYT7esYNSdQvuVM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S6 uniprotkb:Q725S7 intact:EBI-10065263|ensemblbacteria:AAS97817 intact:EBI-10065266|ensemblbacteria:AAS97816 psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:q725s7_desvh(display_long)|uniprotkb:DVU_3347(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065311|imex:IM-22740-27 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2796360(identity) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_012556.1|refseq:WP_010940603.1|ensemblbacteria:AAS97816(transcript)|ensemblbacteria:DVU_3347(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|entrezgene/locuslink:2796359(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 rogid:Civ/ah8AKETrJlNyqmunLGSpe1M882 intact-crc:E48A7903B56F4D79|rigid:REDnJICNDTQ/wYT7esYNSdQvuVM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S7 uniprotkb:Q725S5 intact:EBI-10065266|ensemblbacteria:AAS97816 intact:EBI-10065269|ensemblbacteria:AAS97818 psi-mi:q725s7_desvh(display_long)|uniprotkb:DVU_3347(locus name) psi-mi:q725s5_desvh(display_long)|uniprotkb:DVU_3349(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065345|imex:IM-22740-29 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_012556.1|refseq:WP_010940603.1|ensemblbacteria:AAS97816(transcript)|ensemblbacteria:DVU_3347(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|entrezgene/locuslink:2796359(identity) interpro:IPR033412|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|refseq:YP_012558.1|refseq:WP_010940605.1|go:"GO:0016491"(oxidoreductase activity)|ensemblbacteria:AAS97818(transcript)|ensemblbacteria:DVU_3349(gene)|entrezgene/locuslink:2796361(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Civ/ah8AKETrJlNyqmunLGSpe1M882 rogid:B9/pfTeEbS+8jOfuzf66hNvqUAY882 intact-crc:FCDBF604A85DD17A|rigid:REDnJICNDTQ/wYT7esYNSdQvuVM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725S7 uniprotkb:Q725S6 intact:EBI-10065266|ensemblbacteria:AAS97816 intact:EBI-10065263|ensemblbacteria:AAS97817 psi-mi:q725s7_desvh(display_long)|uniprotkb:DVU_3347(locus name) psi-mi:q725s6_desvh(display_long)|uniprotkb:DVU_3348(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065345|imex:IM-22740-29 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_012556.1|refseq:WP_010940603.1|ensemblbacteria:AAS97816(transcript)|ensemblbacteria:DVU_3347(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|entrezgene/locuslink:2796359(identity) interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR029061|ensemblbacteria:AAS97817(transcript)|ensemblbacteria:DVU_3348(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0030976"(thiamine pyrophosphate binding)|entrezgene/locuslink:2796360(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Civ/ah8AKETrJlNyqmunLGSpe1M882 rogid:7Zt+2isvmJymZAKadcfRbnwYfck882 intact-crc:FCDBF604A85DD17A|rigid:REDnJICNDTQ/wYT7esYNSdQvuVM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q725V9 uniprotkb:Q725W0 intact:EBI-10065362|ensemblbacteria:AAS97784 intact:EBI-10065366|ensemblbacteria:AAS97783 psi-mi:q725v9_desvh(display_long)|uniprotkb:DVU_3316(locus name)|uniprotkb:pyrD(gene name)|psi-mi:pyrD(display_short) psi-mi:q725w0_desvh(display_long)|uniprotkb:DVU_3315(locus name)|uniprotkb:pyrK(gene name)|psi-mi:pyrK(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065396|imex:IM-22740-32 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010940572.1|interpro:IPR033888|interpro:IPR001295(Dihydroorotate dehydrogenase, core)|interpro:IPR005720(Dihydroorotate dehydrogenase, class 1, core)|interpro:IPR012135(Dihydroorotate dehydrogenase, classes 1 and 2)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024920|refseq:YP_012524.1|ensemblbacteria:AAS97784(transcript)|ensemblbacteria:DVU_3316(gene)|go:"GO:0004152"(dihydroorotate dehydrogenase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|entrezgene/locuslink:2796052(identity) interpro:IPR012165(Cytochrome-c3 hydrogenase, gamma subunit)|interpro:IPR017927|interpro:IPR017938|interpro:IPR019480|refseq:YP_012523.1|refseq:WP_010940571.1|ensemblbacteria:AAS97783(transcript)|ensemblbacteria:DVU_3315(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR037117|interpro:IPR039261|entrezgene/locuslink:2796051(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:s+GZoJbZ1WbnwValE/o98ek0FcA882 rogid:tbxDfY8mz0HIUuZQfBQn+37c6ag882 intact-crc:CB1D75AB07CC1E73|rigid:HRuvlZ3p/mvJtPaANT8e5Jqm8F4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726A0 uniprotkb:P45574 intact:EBI-10064827|ensemblbacteria:AAS97743 intact:EBI-9016991|ensemblbacteria:AAS94885|uniprotkb:Q46581 psi-mi:q726a0_desvh(display_long)|uniprotkb:DVU_3273(locus name) psi-mi:dsva_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit alpha(gene name synonym)|uniprotkb:dsrA(gene name synonym)|uniprotkb:DVU_0402(locus name)|uniprotkb:dsvA(gene name)|psi-mi:dsvA(display_short)|uniprotkb:Desulfoviridin subunit alpha(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit alpha(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065465|imex:IM-22740-36 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_012483.1|refseq:WP_010940531.1|ensemblbacteria:AAS97743(transcript)|ensemblbacteria:DVU_3273(gene)|entrezgene/locuslink:2795997(identity) ensemblbacteria:AAS94885(transcript)|ensemblbacteria:DVU_0402(gene)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937709.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011806(Sulphite reductase, dissimilatory-type alpha subunit)|interpro:IPR017896|rcsb pdb:2V4J|refseq:YP_009626.1|interpro:IPR036136|entrezgene/locuslink:2796152(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.76" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:y33nk4pbVYiddUhfLrewkguhBjI882 rogid:+5zB49by4Md3smwTEj+tXy138ms882 intact-crc:D6A9B897A5644FE2|rigid:KmKUZBlxZorTL8vE3tIIOq6Qgv4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726A0 uniprotkb:P45575 intact:EBI-10064827|ensemblbacteria:AAS97743 intact:EBI-9016987|ensemblbacteria:AAS94886 psi-mi:q726a0_desvh(display_long)|uniprotkb:DVU_3273(locus name) psi-mi:dsvb_desvh(display_long)|uniprotkb:Dissimilatory sulfite reductase subunit beta(gene name synonym)|uniprotkb:dsrB(gene name synonym)|uniprotkb:DVU_0403(locus name)|uniprotkb:dsvB(gene name)|psi-mi:dsvB(display_short)|uniprotkb:Desulfoviridin subunit beta(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065465|imex:IM-22740-36 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_012483.1|refseq:WP_010940531.1|ensemblbacteria:AAS97743(transcript)|ensemblbacteria:DVU_3273(gene)|entrezgene/locuslink:2795997(identity) ensemblbacteria:AAS94886(transcript)|ensemblbacteria:DVU_0403(gene)|go:"GO:0006790"(sulfur compound metabolic process)|go:"GO:0009055"(electron transfer activity)|go:"GO:0018551"(hydrogensulfite reductase activity)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|refseq:WP_010937710.1|interpro:IPR005117(Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like)|interpro:IPR006067(Nitrite and sulphite reductase 4Fe-4S region)|interpro:IPR011808(Sulphite reductase, dissimilatory-type beta subunit)|interpro:IPR017896|interpro:IPR017900|rcsb pdb:2V4J|refseq:YP_009627.1|interpro:IPR036136|entrezgene/locuslink:2796153(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:y33nk4pbVYiddUhfLrewkguhBjI882 rogid:3JNb6iXOiIQHSr7wIlzwNsG07pk882 intact-crc:D6A9B897A5644FE2|rigid:KmKUZBlxZorTL8vE3tIIOq6Qgv4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726E7 uniprotkb:Q72C29 intact:EBI-10065191|ensemblbacteria:AAS97676 intact:EBI-10065571|ensemblbacteria:AAS95933 psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065588|imex:IM-22740-43 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 intact-crc:010CE974D405D0DE|rigid:taUIkXs1CHNWhcuUcURvQFZaZwg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726E7 uniprotkb:Q725M8 intact:EBI-10065191|ensemblbacteria:AAS97676 intact:EBI-10065188|ensemblbacteria:AAS97711 psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:q725m8_desvh(display_long)|uniprotkb:DVU_3241(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065588|imex:IM-22740-43 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) interpro:IPR035107|interpro:IPR011063(PP-loop)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:YP_012451.1|refseq:WP_010940499.1|ensemblbacteria:AAS97711(transcript)|ensemblbacteria:DVU_3241(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0016740"(transferase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793891(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 rogid:T1BarfzGnuLRPkvxEYdwsgo3How882 intact-crc:010CE974D405D0DE|rigid:taUIkXs1CHNWhcuUcURvQFZaZwg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726C8 uniprotkb:Q726C9 intact:EBI-10065537|ensemblbacteria:AAS97733 intact:EBI-10065541|ensemblbacteria:AAS97732 psi-mi:q726c8_desvh(display_long)|uniprotkb:DVU_3263(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:q726c9_desvh(display_long)|uniprotkb:DVU_3262(locus name)|uniprotkb:fdrA(gene name)|psi-mi:fdrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065555|imex:IM-22740-41 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:YP_012473.1|refseq:WP_010940521.1|ensemblbacteria:AAS97733(transcript)|ensemblbacteria:DVU_3263(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036010|entrezgene/locuslink:2793867(identity) interpro:IPR003952(Fumarate reductase/succinate dehydrogenase, FAD-binding site)|interpro:IPR003953(Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal)|interpro:IPR014006(Succinate dehydrogenase or fumarate reductase, flavoprotein subunit)|interpro:IPR015939(Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal)|interpro:IPR027477|refseq:YP_012472.1|refseq:WP_010940520.1|ensemblbacteria:AAS97732(transcript)|ensemblbacteria:DVU_3262(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016627"(oxidoreductase activity, acting on the CH-CH group of donors)|go:"GO:0022900"(electron transport chain)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|interpro:IPR037099|entrezgene/locuslink:2793866(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.38" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:KLRaHE5n9ReFozUKlyI8ZT+N7JA882 rogid:3PLDC1TVgGl0L9D3kG1MZ8jIpXo882 intact-crc:45F69FE9EF24A24F|rigid:WU5ER5DFq1RPnOlbJljzh/W5kG4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV5 uniprotkb:Q726A1 intact:EBI-10065482|ensemblbacteria:AAS94946 intact:EBI-10065486|ensemblbacteria:AAS97742 psi-mi:q72ev5_desvh(display_long)|uniprotkb:5-enolpyruvylshikimate-3-phosphate synthase(gene name synonym)|uniprotkb:DVU_0463(locus name)|uniprotkb:aroA(gene name)|psi-mi:aroA(display_short) psi-mi:q726a1_desvh(display_long)|uniprotkb:DVU_3272(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065502|imex:IM-22740-38 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001986(3-phosphoshikimate 1-carboxyvinyltransferase, core)|interpro:IPR006264(3-phosphoshikimate 1-carboxyvinyltransferase, subgroup)|interpro:IPR013792(RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)|refseq:WP_010937770.1|refseq:YP_009687.1|ensemblbacteria:AAS94946(transcript)|ensemblbacteria:DVU_0463(gene)|go:"GO:0003866"(3-phosphoshikimate 1-carboxyvinyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|interpro:IPR036968|entrezgene/locuslink:2794476(identity) interpro:IPR001440(Tetratricopeptide TPR-1)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|refseq:YP_012482.1|refseq:WP_010940530.1|ensemblbacteria:AAS97742(transcript)|ensemblbacteria:DVU_3272(gene)|entrezgene/locuslink:2795996(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.68" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:wTgIPqX9LPxWksya/Ts48V+an18882 rogid:aCCnvWM114Max4sOCBsN5+djcjA882 intact-crc:3AED891B236010E4|rigid:LiHUlQJAj3F9VF6Uvoc3Q7vyKTY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726J4 uniprotkb:Q72FQ1 intact:EBI-10065640|ensemblbacteria:AAS97584 intact:EBI-10065635|ensemblbacteria:AAS94646 psi-mi:cara_desvh(display_long)|uniprotkb:Carbamoyl-phosphate synthetase glutamine chain(gene name synonym)|uniprotkb:DVU_3113(locus name)|uniprotkb:carA(gene name)|psi-mi:carA(display_short) psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065654|imex:IM-22740-46 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002474(Carbamoyl phosphate synthase, small subunit, N-terminal)|interpro:IPR006274(Carbamoyl phosphate synthase, small subunit)|interpro:IPR017926|interpro:IPR029062|refseq:YP_012324.1|refseq:WP_010940372.1|ensemblbacteria:DVU_3113(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|ensemblbacteria:AAS97584(transcript)|interpro:IPR035686|interpro:IPR036480|entrezgene/locuslink:2796605(identity) interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914|entrezgene/locuslink:2796778(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:X81Lv9JQcjmM+HsJv1TePNg/3i0882 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 intact-crc:24DD913402030873|rigid:Uj0ewrZ5PRS1vHHVQhJ6jpYeUJY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q729F0 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065806|imex:IM-22740-50 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:3018179F63258FBA|rigid:uAta/1Ei98kViGcbKP1QnkNWpdY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q726S4 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065806|imex:IM-22740-50 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:3018179F63258FBA|rigid:uAta/1Ei98kViGcbKP1QnkNWpdY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q729E9 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065732|ensemblbacteria:AAS96875 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q729e9_desvh(display_long)|uniprotkb:DVU_2402(locus name)|uniprotkb:hdrA(gene name)|psi-mi:hdrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065806|imex:IM-22740-50 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_011615.1|refseq:WP_010939674.1|ensemblbacteria:AAS96875(transcript)|ensemblbacteria:DVU_2402(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2794487(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.47" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:I+/Afqom+MCHpG+fz24YX+j/R24882 intact-crc:3018179F63258FBA|rigid:uAta/1Ei98kViGcbKP1QnkNWpdY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72A93 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065729|ensemblbacteria:AAS96577 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72a93_desvh(display_long)|uniprotkb:DVU_2104(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065806|imex:IM-22740-50 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011317.1|refseq:WP_010939381.1|ensemblbacteria:AAS96577(transcript)|ensemblbacteria:DVU_2104(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795480(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.36" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:+/g/xcX7eqUoYDrnOvjMsS3S140882 intact-crc:3018179F63258FBA|rigid:uAta/1Ei98kViGcbKP1QnkNWpdY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q729I6 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065723|ensemblbacteria:AAS96837 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q729i6_desvh(display_long)|uniprotkb:DVU_2364(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065806|imex:IM-22740-50 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_011577.1|refseq:WP_010939637.1|ensemblbacteria:AAS96837(transcript)|ensemblbacteria:DVU_2364(gene)|go:"GO:0008483"(transaminase activity)|go:"GO:0009058"(biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2796523(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:jw8r17PK1DMFKnEXmY3MgGe/6jo882 intact-crc:3018179F63258FBA|rigid:uAta/1Ei98kViGcbKP1QnkNWpdY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q727A8 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065746|ensemblbacteria:AAS97419 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065806|imex:IM-22740-50 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.61" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 intact-crc:3018179F63258FBA|rigid:uAta/1Ei98kViGcbKP1QnkNWpdY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q72AS3 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-9012330 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065806|imex:IM-22740-50 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.45" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:3018179F63258FBA|rigid:uAta/1Ei98kViGcbKP1QnkNWpdY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S3 uniprotkb:Q726S4 intact:EBI-10065749|ensemblbacteria:AAS97504 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065884|imex:IM-22740-52 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:EBD2F04058E9C5D4|rigid:IkaedDuwqz2QBwFkloMKC/z/+I4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q72CV4 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065903|ensemblbacteria:AAS95657 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q72cv4_desvh(display_long)|uniprotkb:DVU_1179(locus name)|uniprotkb:aor(gene name)|psi-mi:aor(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065940|imex:IM-22740-54 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|refseq:YP_010398.1|refseq:WP_010938476.1|ensemblbacteria:AAS95657(transcript)|ensemblbacteria:DVU_1179(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2796664(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.30" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid://UHaftptjuUgn+rNqOh5dzqgdY882 intact-crc:77DF0891333671F3|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q72A94 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065907|ensemblbacteria:AAS96576 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q72a94_desvh(display_long)|uniprotkb:DVU_2103(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065940|imex:IM-22740-54 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011316.1|refseq:WP_010939380.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|ensemblbacteria:AAS96576(transcript)|ensemblbacteria:DVU_2103(gene)|entrezgene/locuslink:2795479(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.32" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:bIlVXxSJZO2d9vZ2o9xs0d/Wo/Q882 intact-crc:77DF0891333671F3|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q726S4 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065743|ensemblbacteria:AAS97503 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q726s4_desvh(display_long)|uniprotkb:DVU_3032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065940|imex:IM-22740-54 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR024185|interpro:IPR003741(Protein of unknown function DUF162)|refseq:YP_012243.1|refseq:WP_010940291.1|ensemblbacteria:AAS97503(transcript)|ensemblbacteria:DVU_3032(gene)|interpro:IPR037171|entrezgene/locuslink:2796449(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.84" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:t8Vpd9+ojnAnqxOpd8M1sfdHmOQ882 intact-crc:77DF0891333671F3|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q726S3 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065940|imex:IM-22740-54 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.60" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:77DF0891333671F3|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q729U7 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-10065900|ensemblbacteria:AAS96724 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q729u7_desvh(display_long)|uniprotkb:DVU_2251(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065940|imex:IM-22740-54 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) interpro:IPR001387(Helix-turn-helix type 3)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|interpro:IPR011051(Cupin, RmlC-type)|interpro:IPR013096(Cupin 2, conserved barrel)|interpro:IPR014710(RmlC-like jelly roll fold)|refseq:YP_011464.1|refseq:WP_010939526.1|ensemblbacteria:AAS96724(transcript)|ensemblbacteria:DVU_2251(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2795403(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.50" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:9GqiNXYRfuPwD7YOjwThmdE6ATI882 intact-crc:77DF0891333671F3|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726S8 uniprotkb:Q72AS3 intact:EBI-10065726|ensemblbacteria:AAS97499 intact:EBI-9012330 psi-mi:q726s8_desvh(display_long)|uniprotkb:DVU_3028(locus name) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065940|imex:IM-22740-54 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012239.1|ensemblbacteria:AAS97499(transcript)|ensemblbacteria:DVU_3028(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR012257(Glycolate oxidase, iron-sulphur subunit)|entrezgene/locuslink:2796445(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yoMRi4oKXiOjtnH/HpjCbSvdltY882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:77DF0891333671F3|rigid:m7Zhiwm7Ha8CLU3OFNV5YSWAipY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CT0 uniprotkb:Q726V4 intact:EBI-10065973|ensemblbacteria:AAS95681 intact:EBI-10065980|ensemblbacteria:AAS97473 psi-mi:glya_desvh(display_long)|uniprotkb:DVU_1203(locus name)|uniprotkb:glyA(gene name)|psi-mi:glyA(display_short) psi-mi:q726v4_desvh(display_long)|uniprotkb:DVU_3002(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10065993|imex:IM-22740-56 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001085(Glycine hydroxymethyltransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR019798|refseq:YP_010422.1|refseq:WP_010938499.1|ensemblbacteria:AAS95681(transcript)|ensemblbacteria:DVU_1203(gene)|go:"GO:0004372"(glycine hydroxymethyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019264"(glycine biosynthetic process from serine)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0035999"(tetrahydrofolate interconversion)|interpro:IPR039429|entrezgene/locuslink:2796660(identity) interpro:IPR029063|refseq:YP_012213.1|refseq:WP_010940261.1|ensemblbacteria:AAS97473(transcript)|ensemblbacteria:DVU_3002(gene)|entrezgene/locuslink:2793715(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.39" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:qvZABnUa4OAh0x1pR2kjrAk4Hrk882 rogid:Ekdhp3OYSYSIaFEnC9a1ycSZX+0882 intact-crc:03207B648BBE766B|rigid:Jnc5WIcRM8vDhvEgDwSGmR2Yl+M false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726W1 uniprotkb:Q726W7 intact:EBI-10066006|ensemblbacteria:AAS97466 intact:EBI-10066012|ensemblbacteria:AAS97460 psi-mi:q726w1_desvh(display_long)|uniprotkb:DVU_2995(locus name) psi-mi:q726w7_desvh(display_long)|uniprotkb:DVU_2989(locus name)|uniprotkb:pspF(gene name)|psi-mi:pspF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066026|imex:IM-22740-58 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_012206.1|refseq:WP_010940254.1|ensemblbacteria:AAS97466(transcript)|ensemblbacteria:DVU_2995(gene)|go:"GO:0016757"(glycosyltransferase activity)|interpro:IPR001296(Glycosyl transferase, group 1)|entrezgene/locuslink:2796309(identity) interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR014317(Transcriptional activator, PspF)|interpro:IPR025944|interpro:IPR027417|refseq:YP_012200.1|refseq:WP_010940248.1|ensemblbacteria:AAS97460(transcript)|ensemblbacteria:DVU_2989(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2796303(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:71gG1F/+ws72rW/2wuMArtxu0Yk882 rogid:JIBOPJpQakjWd7+I9qKUlsFT0kU882 intact-crc:E650321C783DFFBD|rigid:FidyfgFKTXUtg/DIKM7cZqxRZ0Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726W7 uniprotkb:Q726W1 intact:EBI-10066012|ensemblbacteria:AAS97460 intact:EBI-10066006|ensemblbacteria:AAS97466 psi-mi:q726w7_desvh(display_long)|uniprotkb:DVU_2989(locus name)|uniprotkb:pspF(gene name)|psi-mi:pspF(display_short) psi-mi:q726w1_desvh(display_long)|uniprotkb:DVU_2995(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066052|imex:IM-22740-60 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR014317(Transcriptional activator, PspF)|interpro:IPR025944|interpro:IPR027417|refseq:YP_012200.1|refseq:WP_010940248.1|ensemblbacteria:AAS97460(transcript)|ensemblbacteria:DVU_2989(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2796303(identity) refseq:YP_012206.1|refseq:WP_010940254.1|ensemblbacteria:AAS97466(transcript)|ensemblbacteria:DVU_2995(gene)|go:"GO:0016757"(glycosyltransferase activity)|interpro:IPR001296(Glycosyl transferase, group 1)|entrezgene/locuslink:2796309(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:JIBOPJpQakjWd7+I9qKUlsFT0kU882 rogid:71gG1F/+ws72rW/2wuMArtxu0Yk882 intact-crc:86965D286F21A768|rigid:FidyfgFKTXUtg/DIKM7cZqxRZ0Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726W8 uniprotkb:Q726W7 intact:EBI-10066068|ensemblbacteria:AAS97459 intact:EBI-10066012|ensemblbacteria:AAS97460 psi-mi:q726w8_desvh(display_long)|uniprotkb:DVU_2988(locus name)|uniprotkb:pspA(gene name)|psi-mi:pspA(display_short) psi-mi:q726w7_desvh(display_long)|uniprotkb:DVU_2989(locus name)|uniprotkb:pspF(gene name)|psi-mi:pspF(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066082|imex:IM-22740-62 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007157(PspA/IM30)|interpro:IPR014319(Phage shock protein A)|refseq:YP_012199.1|ensemblbacteria:AAS97459(transcript)|ensemblbacteria:DVU_2988(gene)|entrezgene/locuslink:2796302(identity) interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR014317(Transcriptional activator, PspF)|interpro:IPR025944|interpro:IPR027417|refseq:YP_012200.1|refseq:WP_010940248.1|ensemblbacteria:AAS97460(transcript)|ensemblbacteria:DVU_2989(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2796303(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.88" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:kZOFwGLeiw69CYg5DQQIFjgLdEo882 rogid:JIBOPJpQakjWd7+I9qKUlsFT0kU882 intact-crc:7E50491313EFC204|rigid:gjjAAeygFpNwWkSjKkEQn4XWz3U false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726X4 uniprotkb:Q726X3 intact:EBI-10066095|ensemblbacteria:AAS97453 intact:EBI-10066099|ensemblbacteria:AAS97454 psi-mi:leuc_desvh(display_long)|uniprotkb:Alpha-IPM isomerase(gene name synonym)|uniprotkb:Isopropylmalate isomerase(gene name synonym)|uniprotkb:DVU_2982(locus name)|uniprotkb:leuC(gene name)|psi-mi:leuC(display_short) psi-mi:leud_desvh(display_long)|uniprotkb:Alpha-IPM isomerase(gene name synonym)|uniprotkb:Isopropylmalate isomerase(gene name synonym)|uniprotkb:DVU_2983(locus name)|uniprotkb:leuD(gene name)|psi-mi:leuD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066116|imex:IM-22740-64 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033941|interpro:IPR001030(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha)|interpro:IPR006251(Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup)|interpro:IPR011826(Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic)|interpro:IPR015931(Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3)|interpro:IPR018136|refseq:YP_012193.1|refseq:WP_010940241.1|ensemblbacteria:AAS97453(transcript)|ensemblbacteria:DVU_2982(gene)|go:"GO:0003861"(3-isopropylmalate dehydratase activity)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR036008|entrezgene/locuslink:2796296(identity) interpro:IPR033940|interpro:IPR000573(Aconitase A/isopropylmalate dehydratase small subunit, swivel)|interpro:IPR011827(3-isopropylmalate dehydratase, small subunit, subgroup)|interpro:IPR015928(Aconitase/3-isopropylmalate dehydratase, swivel)|refseq:YP_012194.1|refseq:WP_010940242.1|ensemblbacteria:AAS97454(transcript)|ensemblbacteria:DVU_2983(gene)|go:"GO:0003861"(3-isopropylmalate dehydratase activity)|go:"GO:0009082"(branched-chain amino acid biosynthetic process)|go:"GO:0009098"(leucine biosynthetic process)|entrezgene/locuslink:2796297(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:pLJ37zhPWm2JON8lTI0HnHv1Dy8882 rogid:6v9ADe8X/uNq0OIGkaw+jevsVis882 intact-crc:07B2884A4BDB4660|rigid:xiPyMko7AS5o3ttmdgzO208Nfak false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E96 uniprotkb:Q726Y3 intact:EBI-10066154|ensemblbacteria:AAS95163 intact:EBI-10066148|ensemblbacteria:AAS97444 psi-mi:q72e96_desvh(display_long)|uniprotkb:DVU_0682(locus name) psi-mi:q726y3_desvh(display_long)|uniprotkb:DVU_2973(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066167|imex:IM-22740-67 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR015927(Peptidase S24, S26A, S26B and S26C)|interpro:IPR010744(Bacteriophage CI repressor)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|refseq:YP_009904.1|ensemblbacteria:AAS95163(transcript)|ensemblbacteria:DVU_0682(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|interpro:IPR001387(Helix-turn-helix type 3)|interpro:IPR036286|interpro:IPR039418|entrezgene/locuslink:2795332(identity) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:YP_012184.1|refseq:WP_010940232.1|ensemblbacteria:AAS97444(transcript)|ensemblbacteria:DVU_2973(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2796287(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.91" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:rBvI+dN+m7sv712cwf+s8bC1I2Q882 rogid:XVJm/0Y4aonzgyfUQTeJZvq03wI882 intact-crc:7D2A2C6A195B1897|rigid:l4WvBwCWt++J0O/RESUnkpPc8Cw false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q726S3 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10065749|ensemblbacteria:AAS97504 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q726s3_desvh(display_long)|uniprotkb:DVU_3033(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066228|imex:IM-22740-70 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR003741(Protein of unknown function DUF162)|interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_012244.1|refseq:WP_010940292.1|ensemblbacteria:AAS97504(transcript)|ensemblbacteria:DVU_3033(gene)|go:"GO:0019516"(lactate oxidation)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR004452(Iron-sulphur cluster binding protein)|interpro:IPR037171|entrezgene/locuslink:2796450(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.61" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:Cth5mEu6DCoDPmSOAxld7b3qymo882 intact-crc:8349D48F769F1611|rigid:NUPy0zLWNqHv2I/K08C55mx7FSQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C0 uniprotkb:Q72AS2 intact:EBI-10066250|ensemblbacteria:AAS97407 intact:EBI-10066241|ensemblbacteria:AAS96395 psi-mi:gpma_desvh(display_long)|uniprotkb:gpm(gene name synonym)|uniprotkb:DVU_2935(locus name)|uniprotkb:gpmA(gene name)|psi-mi:gpmA(display_short) psi-mi:q72as2_desvh(display_long)|uniprotkb:DVU_1919(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066268|imex:IM-22740-72 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001345(Phosphoglycerate/bisphosphoglycerate mutase)|interpro:IPR005952(Phosphoglycerate mutase 1)|interpro:IPR013078(Phosphoglycerate mutase)|interpro:IPR029033|refseq:YP_012147.1|refseq:WP_010940195.1|ensemblbacteria:AAS97407(transcript)|ensemblbacteria:DVU_2935(gene)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0046538"(2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity)|entrezgene/locuslink:2793973(identity) interpro:IPR000671(Peptidase A31, hydrogen uptake protein)|interpro:IPR023430|refseq:YP_011136.1|refseq:WP_010939205.1|ensemblbacteria:AAS96395(transcript)|ensemblbacteria:DVU_1919(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008233"(peptidase activity)|entrezgene/locuslink:2793335(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+bQP8/z+NmcGQjtcM5ZfLItjzVo882 rogid:UPHJGAF+FsaEQEpiIkOGiSMdKbA882 intact-crc:234F844F626593CB|rigid:uXe3ESvOiZNYDM0yB0BG5kzAefk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C0 uniprotkb:Q72AL8 intact:EBI-10066250|ensemblbacteria:AAS97407 intact:EBI-10066244|ensemblbacteria:AAS96450 psi-mi:gpma_desvh(display_long)|uniprotkb:gpm(gene name synonym)|uniprotkb:DVU_2935(locus name)|uniprotkb:gpmA(gene name)|psi-mi:gpmA(display_short) psi-mi:q72al8_desvh(display_long)|uniprotkb:DVU_1974(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066268|imex:IM-22740-72 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001345(Phosphoglycerate/bisphosphoglycerate mutase)|interpro:IPR005952(Phosphoglycerate mutase 1)|interpro:IPR013078(Phosphoglycerate mutase)|interpro:IPR029033|refseq:YP_012147.1|refseq:WP_010940195.1|ensemblbacteria:AAS97407(transcript)|ensemblbacteria:DVU_2935(gene)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0046538"(2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity)|entrezgene/locuslink:2793973(identity) interpro:IPR023753|refseq:YP_011191.1|refseq:WP_010939260.1|ensemblbacteria:AAS96450(transcript)|ensemblbacteria:DVU_1974(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036188|entrezgene/locuslink:2795988(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.94" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+bQP8/z+NmcGQjtcM5ZfLItjzVo882 rogid:iz7G+27COBziXzPRsyHptaObtAE882 intact-crc:234F844F626593CB|rigid:uXe3ESvOiZNYDM0yB0BG5kzAefk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C7 uniprotkb:Q727C6 intact:EBI-10066295|ensemblbacteria:AAS97400 intact:EBI-10065699|ensemblbacteria:AAS97401 psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066362|imex:IM-22740-75 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 intact-crc:08BDFA57B0C67116|rigid:d47Nx9oAD8FI5mwKLnRyioXBkXs false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727C7 uniprotkb:Q72CF4 intact:EBI-10066295|ensemblbacteria:AAS97400 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066362|imex:IM-22740-75 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:08BDFA57B0C67116|rigid:d47Nx9oAD8FI5mwKLnRyioXBkXs false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727F3 uniprotkb:Q727F4 intact:EBI-10066383|ensemblbacteria:AAS97374 intact:EBI-10066379|ensemblbacteria:AAS97373 psi-mi:q727f3_desvh(display_long)|uniprotkb:DVU_2902(locus name)|uniprotkb:pyrC(gene name)|psi-mi:pyrC(display_short) psi-mi:pyrb_desvh(display_long)|uniprotkb:Aspartate transcarbamylase(gene name synonym)|uniprotkb:DVU_2901(locus name)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066400|imex:IM-22740-77 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006680(Amidohydrolase 1)|refseq:WP_010940162.1|interpro:IPR002195(Dihydroorotase, conserved site)|interpro:IPR004722(Dihydroorotase multifunctional complex type)|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:YP_012114.1|interpro:IPR032466|ensemblbacteria:AAS97374(transcript)|ensemblbacteria:DVU_2902(gene)|go:"GO:0004151"(dihydroorotase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|entrezgene/locuslink:2793932(identity) interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|refseq:YP_012113.1|refseq:WP_010940161.1|ensemblbacteria:AAS97373(transcript)|ensemblbacteria:DVU_2901(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR036901|entrezgene/locuslink:2793931(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+UEeQqg9IRaKqEnHcm7ioESuB6k882 rogid:W13RREVUawgRc7XxXkARSwTUTDA882 intact-crc:576578729BFC1ACD|rigid:56aUpNUl+2dsFYDITRe9NKKfok8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727H0 uniprotkb:Q727T9 intact:EBI-10066429|ensemblbacteria:AAS97357 intact:EBI-10066426|ensemblbacteria:AAS97237 psi-mi:q727h0_desvh(display_long)|uniprotkb:DVU_2885(locus name) psi-mi:q727t9_desvh(display_long)|uniprotkb:DVU_2765(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066445|imex:IM-22740-80 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001670(Iron-containing alcohol dehydrogenase)|interpro:IPR018211|refseq:YP_012097.1|refseq:WP_010940145.1|ensemblbacteria:AAS97357(transcript)|ensemblbacteria:DVU_2885(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR039697|entrezgene/locuslink:2793915(identity) interpro:IPR001279(Beta-lactamase-like)|refseq:YP_011977.1|refseq:WP_010940031.1|ensemblbacteria:AAS97237(transcript)|ensemblbacteria:DVU_2765(gene)|interpro:IPR036866|entrezgene/locuslink:2796315(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:vjmvC/85ozqUcIOkfpT+qZQLgyg882 rogid:1lSzPGPfrXcrxcozEq34U5edV1U882 intact-crc:65C95C8F8C3878FA|rigid:7nzJBehwU9PwH5yx+SI/w3uisf8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727L6 uniprotkb:Q727L7 intact:EBI-10066483|ensemblbacteria:AAS97311 intact:EBI-10066477|ensemblbacteria:AAS97310 psi-mi:q727l6_desvh(display_long)|uniprotkb:DVU_2839(locus name) psi-mi:q727l7_desvh(display_long)|uniprotkb:DVU_2838(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066496|imex:IM-22740-83 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_012051.1|refseq:WP_010940105.1|ensemblbacteria:AAS97311(transcript)|ensemblbacteria:DVU_2839(gene)|entrezgene/locuslink:2796393(identity) interpro:IPR003607(Metal-dependent phosphohydrolase, HD region)|interpro:IPR006674(Metal-dependent phosphohydrolase, HD region, subdomain)|refseq:YP_012050.1|refseq:WP_010940104.1|ensemblbacteria:AAS97310(transcript)|ensemblbacteria:DVU_2838(gene)|entrezgene/locuslink:2796392(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:P9rj9D/b3vmfRz+AloNg5LuHfuY882 rogid:IvQEnBYAc875GSwofnIsrKCh6JM882 intact-crc:8FED473336F4A2B1|rigid:CvPRa5ftc7NFHylUh8yUVQVbV30 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728C6 uniprotkb:Q727N0 intact:EBI-10066547|ensemblbacteria:AAS97149 intact:EBI-10066541|ensemblbacteria:AAS97297 psi-mi:q728c6_desvh(display_long)|uniprotkb:DVU_2677(locus name) psi-mi:islb_desvh(display_long)|uniprotkb:iseH(gene name)|psi-mi:iseH(display_short)|uniprotkb:GRE activase IseH(gene name synonym)|uniprotkb:Glycyl-radical enzyme activating enzyme IseH(gene name synonym)|uniprotkb:DVU_2825(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066560|imex:IM-22740-87 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR011006(CheY-like)|refseq:YP_011889.1|refseq:WP_010939946.1|ensemblbacteria:AAS97149(transcript)|ensemblbacteria:DVU_2677(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|interpro:IPR036890|entrezgene/locuslink:2795048(identity) interpro:IPR001989(Radical-activating enzyme, conserved site)|interpro:IPR007197(Radical SAM)|interpro:IPR012839(Glycyl radical enzyme-activating)|interpro:IPR017896|refseq:WP_010940091.1|refseq:YP_012037.1|ensemblbacteria:AAS97297(transcript)|ensemblbacteria:DVU_2825(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046306"(alkanesulfonate catabolic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034457|interpro:IPR040074|entrezgene/locuslink:2796379(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:B24ddCejqBRnpDy5PH7un5ttHZg882 rogid:zQ7Q0DDXXj2DvvTRWpU2UcHGcPs882 intact-crc:6F9094ED7E26F4A6|rigid:OrGgQAj7hpUQdzuE7eXuoqinZdQ false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U7 uniprotkb:Q727F8 intact:EBI-10066608|ensemblbacteria:AAS97229 intact:EBI-10066614|ensemblbacteria:AAS97369 psi-mi:q727u7_desvh(display_long)|uniprotkb:mqnC(gene name)|psi-mi:mqnC(display_short)|uniprotkb:Dehypoxanthine futalosine cyclase(gene name synonym)|uniprotkb:Menaquinone biosynthetic enzyme MqnC(gene name synonym)|uniprotkb:DVU_2757(locus name) psi-mi:q727f8_desvh(display_long)|uniprotkb:DVU_2897(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066634|imex:IM-22740-91 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022431|refseq:WP_010940023.1|refseq:YP_011969.1|ensemblbacteria:AAS97229(transcript)|ensemblbacteria:DVU_2757(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016765"("transferase activity, transferring alkyl or aryl (other than methyl) groups")|go:"GO:0046992"(oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034405|entrezgene/locuslink:2794030(identity) refseq:WP_010940157.1|interpro:IPR002737(Protein of unknown function DUF52)|refseq:YP_012109.1|ensemblbacteria:AAS97369(transcript)|ensemblbacteria:DVU_2897(gene)|entrezgene/locuslink:2793927(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.28" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:xfEZwr+QU1wyHEErrzqsORFf6SE882 rogid:iomGR6d1/uVoy1VhN1hIsjEFacE882 intact-crc:57CC7751FD477C01|rigid:0/pB0olVpkwbK+ghUyFuZa89b0g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727U7 uniprotkb:Q727U8 intact:EBI-10066608|ensemblbacteria:AAS97229 intact:EBI-10066617|ensemblbacteria:AAS97228 psi-mi:q727u7_desvh(display_long)|uniprotkb:mqnC(gene name)|psi-mi:mqnC(display_short)|uniprotkb:Dehypoxanthine futalosine cyclase(gene name synonym)|uniprotkb:Menaquinone biosynthetic enzyme MqnC(gene name synonym)|uniprotkb:DVU_2757(locus name) psi-mi:q727u8_desvh(display_long)|uniprotkb:mqnE(gene name)|psi-mi:mqnE(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnE(gene name synonym)|uniprotkb:DVU_2756(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066634|imex:IM-22740-91 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022431|refseq:WP_010940023.1|refseq:YP_011969.1|ensemblbacteria:AAS97229(transcript)|ensemblbacteria:DVU_2757(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016765"("transferase activity, transferring alkyl or aryl (other than methyl) groups")|go:"GO:0046992"(oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034405|entrezgene/locuslink:2794030(identity) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022432|refseq:YP_011968.1|refseq:WP_010940022.1|ensemblbacteria:AAS97228(transcript)|ensemblbacteria:DVU_2756(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102573"(aminodeoxyfutalosine synthase activity)|interpro:IPR034405|entrezgene/locuslink:2794029(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:xfEZwr+QU1wyHEErrzqsORFf6SE882 rogid:bb3wBr3eiO33UmFoNQPmFaoQ0Ok882 intact-crc:57CC7751FD477C01|rigid:0/pB0olVpkwbK+ghUyFuZa89b0g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728D4 uniprotkb:Q727F2 intact:EBI-10066654|ensemblbacteria:AAS97141 intact:EBI-10066657|ensemblbacteria:AAS97375 psi-mi:q728d4_desvh(display_long)|uniprotkb:DVU_2669(locus name) psi-mi:q727f2_desvh(display_long)|uniprotkb:DVU_2903(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066677|imex:IM-22740-93 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR009252(Protein of unknown function DUF904)|refseq:YP_011881.1|refseq:WP_010939938.1|ensemblbacteria:AAS97141(transcript)|ensemblbacteria:DVU_2669(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0090529"(cell septum assembly)|entrezgene/locuslink:2796236(identity) interpro:IPR006674(Metal-dependent phosphohydrolase, HD region, subdomain)|refseq:YP_012115.1|refseq:WP_010940163.1|ensemblbacteria:AAS97375(transcript)|ensemblbacteria:DVU_2903(gene)|entrezgene/locuslink:2793933(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Y0lpJ9N1HoulRyR3vcl5T+8xv0c882 rogid:0/bXQjFgNaeeOynT3rcrV2FHMqY882 intact-crc:1EEFEA87019168DA|rigid:uWV8VcUzAGn7yV0n6x5Fk6PYv2k false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BU5 uniprotkb:Q728G0 intact:EBI-10066693|ensemblbacteria:AAS96017 intact:EBI-10066697|ensemblbacteria:AAS97115 psi-mi:q72bu5_desvh(display_long)|uniprotkb:DVU_1539(locus name)|uniprotkb:glpX(gene name)|psi-mi:glpX(display_short) psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066711|imex:IM-22740-95 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004464(GlpX)|refseq:YP_010758.1|refseq:WP_010938831.1|ensemblbacteria:AAS96017(transcript)|ensemblbacteria:DVU_1539(gene)|go:"GO:0006071"(glycerol metabolic process)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2793689(identity) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:CT97gy9emJCEZP/QFHye+xB6Ccs882 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 intact-crc:BE0FF09029DB6451|rigid:3++j5J2hjYRcFsStPyWAltVEYeU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728G0 uniprotkb:Q728L5 intact:EBI-10066697|ensemblbacteria:AAS97115 intact:EBI-10066767|ensemblbacteria:AAS97060 psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:q728l5_desvh(display_long)|uniprotkb:DVU_2588(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066780|imex:IM-22740-99 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|refseq:YP_011800.1|refseq:WP_010939858.1|ensemblbacteria:AAS97060(transcript)|ensemblbacteria:DVU_2588(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR036388|interpro:IPR039420|entrezgene/locuslink:2796366(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.35" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 rogid:FoRhnFSqK++XOzxbzYRNyQzoXjk882 intact-crc:A096D6339396760B|rigid:gCS4wuTG/vHjAa2Qc991/d6afAE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728X0 uniprotkb:Q728X1 intact:EBI-10066862 intact:EBI-10066870|ensemblbacteria:AAS96953 psi-mi:q728x0_desvh(display_long)|uniprotkb:DVU_2482(locus name)|uniprotkb:fdnG-2(gene name)|psi-mi:fdnG-2(display_short) psi-mi:q728x1_desvh(display_long)|uniprotkb:DVU_2481(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066896|imex:IM-22740-106 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR006443(Formate dehydrogenase, alpha subunit, anaerobic)|interpro:IPR006655(Molybdopterin oxidoreductase, prokaryotic, conserved site)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_011694.1|refseq:WP_010939752.1|go:"GO:0008863"("formate dehydrogenase (NAD+) activity")|go:"GO:0009055"(electron transfer activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0045333"(cellular respiration)|go:"GO:0046872"(metal ion binding)|go:"GO:0047111"("formate dehydrogenase (cytochrome-c-553) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795450(identity) interpro:IPR017896|refseq:YP_011693.1|ensemblbacteria:AAS96953(transcript)|ensemblbacteria:DVU_2481(gene)|entrezgene/locuslink:2795663(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:UeHdNQzWHi+2qYGNZoRNm/DOzVM882 rogid:Xai4sfPBlGz5FuIUd3QRPDMEtyk882 intact-crc:13D0069894CF223C|rigid:0a57Wfg9Qpyr7jUN2qDOiy16heo false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729E0 uniprotkb:Q728Y0 intact:EBI-10066915|ensemblbacteria:AAS96884 intact:EBI-10066912|ensemblbacteria:AAS96944 psi-mi:q729e0_desvh(display_long)|uniprotkb:DVU_2411(locus name) psi-mi:q728y0_desvh(display_long)|uniprotkb:DVU_2472(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066928|imex:IM-22740-108 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002048(Calcium-binding EF-hand)|interpro:IPR011992(EF-Hand type)|interpro:IPR018247|refseq:YP_011624.1|refseq:WP_010939683.1|ensemblbacteria:AAS96884(transcript)|ensemblbacteria:DVU_2411(gene)|go:"GO:0005509"(calcium ion binding)|entrezgene/locuslink:2794496(identity) interpro:IPR004300(Glycoside hydrolase, family 57, core)|interpro:IPR011330(Glycoside hydrolase/deacetylase, beta/alpha-barrel)|interpro:IPR021923|refseq:YP_011684.1|refseq:WP_010939742.1|ensemblbacteria:AAS96944(transcript)|ensemblbacteria:DVU_2472(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0005975"(carbohydrate metabolic process)|entrezgene/locuslink:2795654(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:2wrgsjUMZ4CGamffefIElhkzOrs882 rogid:1VExzQOYhDPyCXuC12d2VBkLQY0882 intact-crc:FB9ABF0977BDF90A|rigid:rt38O6I4u2tKewmD34GHCyRBMrY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q727C6 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10065699|ensemblbacteria:AAS97401 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:rpoc_desvh(display_long)|uniprotkb:DVU_2929(locus name)|uniprotkb:RNA polymerase subunit beta'(gene name synonym)|uniprotkb:Transcriptase subunit beta'(gene name synonym)|uniprotkb:rpoC(gene name)|psi-mi:rpoC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067006|imex:IM-22740-112 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR042102|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007080(RNA polymerase Rpb1, domain 1)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR007083(RNA polymerase Rpb1, domain 4)|interpro:IPR012754(DNA-directed RNA polymerase, subunit beta-prime)|refseq:YP_012141.1|refseq:WP_010940189.1|ensemblbacteria:AAS97401(transcript)|ensemblbacteria:DVU_2929(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0008270"(zinc ion binding)|go:"GO:0006351"(transcription, DNA-templated)|interpro:IPR038120|entrezgene/locuslink:2793967(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:X8q7LjTRj018DvLzQg+GUVNUKv4882 intact-crc:DF4F3D2B48AC04CB|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q72G56 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10066976|ensemblbacteria:AAS94488 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:q72g56_desvh(display_long)|uniprotkb:DVU_0004(locus name)|uniprotkb:gyrA(gene name)|psi-mi:gyrA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067006|imex:IM-22740-112 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR002205(DNA topoisomerase, type IIA, subunit A or C-terminal)|interpro:IPR005743(DNA gyrase, subunit A)|interpro:IPR006691(DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel)|interpro:IPR013757(DNA topoisomerase, type IIA, subunit A, alpha-helical)|interpro:IPR013758(DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta)|interpro:IPR013760(DNA topoisomerase, type IIA, central)|refseq:YP_009229.1|refseq:WP_010937315.1|ensemblbacteria:AAS94488(transcript)|ensemblbacteria:DVU_0004(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003918"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005694"(chromosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006265"(DNA topological change)|interpro:IPR035516|entrezgene/locuslink:2794973(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.40" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:y0l6ztLMSiOKp1NvD9LqUdIEm3g882 intact-crc:DF4F3D2B48AC04CB|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q728Z3 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10066285|ensemblbacteria:AAS96931 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067006|imex:IM-22740-112 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 intact-crc:DF4F3D2B48AC04CB|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q727C7 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067006|imex:IM-22740-112 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.45" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:DF4F3D2B48AC04CB|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z2 uniprotkb:Q72CF4 intact:EBI-10066292|ensemblbacteria:AAS96932 intact:EBI-10066307|ensemblbacteria:AAS95807 psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:rpoa_desvh(display_long)|uniprotkb:RNA polymerase subunit alpha(gene name synonym)|uniprotkb:Transcriptase subunit alpha(gene name synonym)|uniprotkb:DVU_1329(locus name)|uniprotkb:rpoA(gene name)|psi-mi:rpoA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067006|imex:IM-22740-112 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) interpro:IPR011260(RNA polymerase, alpha subunit, C-terminal)|interpro:IPR011262(DNA-directed RNA polymerase, insert)|interpro:IPR011263(DNA-directed RNA polymerase, RpoA/D/Rpb3-type)|interpro:IPR011773(DNA-directed RNA polymerase, alpha subunit)|refseq:YP_010548.1|refseq:WP_010938624.1|ensemblbacteria:AAS95807(transcript)|ensemblbacteria:DVU_1329(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036603|interpro:IPR036643|entrezgene/locuslink:2794624(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.93" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 rogid:zRfYU8aobN2qpOxiYbcmgCsjjfc882 intact-crc:DF4F3D2B48AC04CB|rigid:KzWB4QrGSy2VE3dswvODLzPTQsY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Y1 uniprotkb:Q725J7 intact:EBI-10066941 intact:EBI-10066947|ensemblbacteria:AAS97646 psi-mi:q728y1_desvh(display_long)|uniprotkb:DVU_2471(locus name) psi-mi:q725j7_desvh(display_long)|uniprotkb:DVU_3176(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10066960|imex:IM-22740-110 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011683.1|refseq:WP_010939741.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795653(identity) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028359|refseq:YP_012386.1|refseq:WP_010940434.1|ensemblbacteria:AAS97646(transcript)|ensemblbacteria:DVU_3176(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0016616"(oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)|go:"GO:0016628"(oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291|entrezgene/locuslink:2793826(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:QvnOJ0AqPbmooSgDAZf/1Ff8gBM882 rogid:qKn2i8XqdXdJRHd2gMiUsbAR24Y882 intact-crc:A3DC7CDA032F4760|rigid:bxLR/9YACgY4GMKGN4nyzUJOvNc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z3 uniprotkb:Q728Z2 intact:EBI-10066285|ensemblbacteria:AAS96931 intact:EBI-10066292|ensemblbacteria:AAS96932 psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:q728z2_desvh(display_long)|uniprotkb:DVU_2460(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067064|imex:IM-22740-114 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) refseq:YP_011672.1|ensemblbacteria:AAS96932(transcript)|ensemblbacteria:DVU_2460(gene)|entrezgene/locuslink:2795324(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 rogid:owxruYLfLqWlZ11EN60c5roKSH0882 intact-crc:7B4B00AC59932C4E|rigid:fMyfGPEcAuDzSpKsbn302aISmcM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728Z3 uniprotkb:Q727C7 intact:EBI-10066285|ensemblbacteria:AAS96931 intact:EBI-10066295|ensemblbacteria:AAS97400 psi-mi:q728z3_desvh(display_long)|uniprotkb:DVU_2459(locus name) psi-mi:rpob_desvh(display_long)|uniprotkb:Transcriptase subunit beta(gene name synonym)|uniprotkb:DVU_2928(locus name)|uniprotkb:rpoB(gene name)|psi-mi:rpoB(display_short)|uniprotkb:RNA polymerase subunit beta(gene name synonym) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067064|imex:IM-22740-114 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007476(Putative exonuclease, RdgC)|ensemblbacteria:AAS96931(transcript)|ensemblbacteria:DVU_2459(gene)|go:"GO:0006310"(DNA recombination)|go:"GO:0009295"(nucleoid)|entrezgene/locuslink:2795323(identity) interpro:IPR007120(DNA-directed RNA polymerase, subunit 2, domain 6)|interpro:IPR007121(RNA polymerase, beta subunit, conserved site)|interpro:IPR007641(RNA polymerase Rpb2, domain 7)|interpro:IPR007642(RNA polymerase Rpb2, domain 2)|interpro:IPR007644(RNA polymerase, beta subunit, protrusion)|interpro:IPR007645(RNA polymerase Rpb2, domain 3)|interpro:IPR010243(DNA-directed RNA polymerase, beta subunit, bacterial-type)|interpro:IPR014724(RNA polymerase Rpb2, OB-fold)|interpro:IPR015712(DNA-directed RNA polymerase, subunit 2)|interpro:IPR019462|refseq:YP_012140.1|refseq:WP_010940188.1|ensemblbacteria:AAS97400(transcript)|ensemblbacteria:DVU_2928(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032549"(ribonucleoside binding)|interpro:IPR037033|interpro:IPR037034|entrezgene/locuslink:2793966(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.45" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:x7Dih17jAfQvY6u0PunoZfJMBY4882 rogid:9HJRr3+NF8PpEq2HzdsfGTbDtqA882 intact-crc:7B4B00AC59932C4E|rigid:fMyfGPEcAuDzSpKsbn302aISmcM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729B5 uniprotkb:Q727T2 intact:EBI-10067126|ensemblbacteria:AAS96909 intact:EBI-10067120|ensemblbacteria:AAS97244 psi-mi:q729b5_desvh(display_long)|uniprotkb:DVU_2436(locus name) psi-mi:q727t2_desvh(display_long)|uniprotkb:DVU_2772(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067139|imex:IM-22740-118 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003607(Metal-dependent phosphohydrolase, HD region)|interpro:IPR006674(Metal-dependent phosphohydrolase, HD region, subdomain)|refseq:YP_011649.1|refseq:WP_010939708.1|ensemblbacteria:AAS96909(transcript)|ensemblbacteria:DVU_2436(gene)|go:"GO:0002953"(5'-deoxynucleotidase activity)|interpro:IPR039356|entrezgene/locuslink:2795427(identity) refseq:YP_011984.1|refseq:WP_010940038.1|ensemblbacteria:AAS97244(transcript)|ensemblbacteria:DVU_2772(gene)|interpro:IPR002822(Protein of unknown function DUF111)|entrezgene/locuslink:2796322(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.80" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:L083yJ4yczRDR8RfKzb4lJdcmPU882 rogid:syddSF7wesv+xpgG6ITGt4X0BRI882 intact-crc:2AE96F598A08DEA4|rigid:AQdzq5qgOXSBDs6deGFmghWQ2ow false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729F1 uniprotkb:Q729F0 intact:EBI-10067171|ensemblbacteria:AAS96873 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q729f1_desvh(display_long)|uniprotkb:DVU_2400(locus name) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067198|imex:IM-22740-121 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR017896|interpro:IPR017900|refseq:YP_011613.1|ensemblbacteria:AAS96873(transcript)|ensemblbacteria:DVU_2400(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794485(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.95" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:SLJatcnvM7H2/Y8/R9+zYm3uosc882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:7B09E1908E6B893D|rigid:Kcli9nnB80s9mn2V3TElYbytQ6o false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729Q8 uniprotkb:Q729Q9 intact:EBI-10067332|ensemblbacteria:AAS96764 intact:EBI-10067338|ensemblbacteria:AAS96763 psi-mi:q729q8_desvh(display_long)|uniprotkb:DVU_2291(locus name) psi-mi:q729q9_desvh(display_long)|uniprotkb:DVU_2290(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067351|imex:IM-22740-129 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|refseq:WP_010939566.1|interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR029014|refseq:YP_011504.1|ensemblbacteria:AAS96764(transcript)|ensemblbacteria:DVU_2291(gene)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016651"("oxidoreductase activity, acting on NAD(P)H")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding)|entrezgene/locuslink:2795445(identity) interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|ensemblbacteria:AAS96763(transcript)|ensemblbacteria:DVU_2290(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|interpro:IPR037232|entrezgene/locuslink:2795444(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Yt5P32YlY9IMEma6vpaTTK4+uUc882 rogid:vId31Wmn6in1ErXb+Zeb8SIpIjQ882 intact-crc:0FC45DA34358049F|rigid:naRIe79OtHSCo/4snhuZD/aAWms false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729N8 intact:EBI-10053354 intact:EBI-10067301|ensemblbacteria:AAS96785 - psi-mi:q729n8_desvh(display_long)|uniprotkb:DVU_2312(locus name) psi-mi:dorf40861(display_short)|psi-mi:EBI-10053354(display_long) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067320|imex:IM-22740-127 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010261(Tir chaperone)|refseq:YP_011525.1|refseq:WP_010939586.1|ensemblbacteria:AAS96785(transcript)|ensemblbacteria:DVU_2312(gene)|go:"GO:0030254"(protein secretion by the type III secretion system)|entrezgene/locuslink:2795272(identity) - psi-mi:"MI:0469"(intact) comment: comment:"Identified peptides: AAVFNLMGTAPGEGLLSAGGLPR, ARLEEGYSEAITFSEMR, DMTPDAK, EHAFADR, ELVEDVK, FSHIDIR, FWMQTLDGEK, FWMQTLDGEKITDSATFAGTAQR, GTLSVVGDTPQR, HAGDAASYAR, HTFSAR, IEAGTAHLDLFAR, ITDSATFAGTAQR, KTYPGDDEGTAWR, LDGSFEHDLK, LDGSFEHDLKQSGQGTLTVGTTR, LEEGYSEAITFSEMR, LEVMQQAK, LGLEFFSTR, LITMRPQCGEIIANAMQTHFFR, LLAHGFDGEIR, LLQANPDADIGFLSYR, LLQANPDADIGFLSYRD, LQWLLTER, MQMVDTLNLR, NSPILGK, PQCGEIIANAMQTHFFR, QALPNLHDGAEACGLTPAR, QQAAYGFEVAK, QQAAYGFEVAKPIR, QSGQGTLTVGTTR, STSTLSPGEIDAMR, TFLAER, TGIMYQPVMR, TLLEKPTLAER, TLRDMTPDAK, TYPGDDEGTAWR, VSLHHDGLSVTPDNVFAR"|comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:BzdtiqMsQ93GflA+ajf4riJJ4Pw882 - intact-crc:74397A7CE1D037A4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729U7 uniprotkb:Q729U8 intact:EBI-10065900|ensemblbacteria:AAS96724 intact:EBI-10067367|ensemblbacteria:AAS96723 psi-mi:q729u7_desvh(display_long)|uniprotkb:DVU_2251(locus name) psi-mi:q729u8_desvh(display_long)|uniprotkb:DVU_2250(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067380|imex:IM-22740-131 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001387(Helix-turn-helix type 3)|interpro:IPR010982(Lambda repressor-like, DNA-binding)|interpro:IPR011051(Cupin, RmlC-type)|interpro:IPR013096(Cupin 2, conserved barrel)|interpro:IPR014710(RmlC-like jelly roll fold)|refseq:YP_011464.1|refseq:WP_010939526.1|ensemblbacteria:AAS96724(transcript)|ensemblbacteria:DVU_2251(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2795403(identity) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR020845|interpro:IPR025110|refseq:YP_011463.1|refseq:WP_010939525.1|ensemblbacteria:AAS96723(transcript)|ensemblbacteria:DVU_2250(gene)|entrezgene/locuslink:2795402(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:9GqiNXYRfuPwD7YOjwThmdE6ATI882 rogid:MRzyTgNuRcZ46t/X+BFkEa+oOkM882 intact-crc:1BE1E89B0AC0794F|rigid:Wp7Duyioq64msl3H9Fj+zSZ5P+Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726Y7 uniprotkb:Q729V7 intact:EBI-10067399|ensemblbacteria:AAS97440 intact:EBI-10064945|ensemblbacteria:AAS96713 psi-mi:q726y7_desvh(display_long)|uniprotkb:Acetate--CoA ligase(gene name synonym)|uniprotkb:Acyl-activating enzyme(gene name synonym)|uniprotkb:DVU_2969(locus name)|uniprotkb:acsA(gene name)|psi-mi:acsA(display_short) psi-mi:q729v7_desvh(display_long)|uniprotkb:DVU_2240(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067417|imex:IM-22740-133 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042099|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011904(Acetate--CoA ligase)|interpro:IPR020845|interpro:IPR025110|refseq:YP_012180.1|interpro:IPR032387|refseq:WP_010940228.1|ensemblbacteria:AAS97440(transcript)|ensemblbacteria:DVU_2969(gene)|go:"GO:0003987"(acetate-CoA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016208"(AMP binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0019427"(acetyl-CoA biosynthetic process from acetate)|entrezgene/locuslink:2796283(identity) interpro:IPR002821(Hydantoinase/oxoprolinase)|interpro:IPR008040(Hydantoinaseoxoprolinase, N-terminal)|refseq:YP_011453.1|refseq:WP_010939515.1|ensemblbacteria:AAS96713(transcript)|ensemblbacteria:DVU_2240(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR043129|entrezgene/locuslink:2795392(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.26" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:CpCbQcDPOD2enofgGhmyTGYYQTE882 rogid:lY4GJvddii/woep18tcb6guNssA882 intact-crc:3D45CF5EC3B93B61|rigid:5aS3wbcQqt6X/5vvC8OVSkib8Wg false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X3 uniprotkb:Q729X1 intact:EBI-10067439|ensemblbacteria:AAS96697 intact:EBI-10067436|ensemblbacteria:AAS96699 psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:q729x1_desvh(display_long)|uniprotkb:DVU_2226(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067460|imex:IM-22740-135 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_011439.1|refseq:WP_010939501.1|ensemblbacteria:AAS96699(transcript)|ensemblbacteria:DVU_2226(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016874"(ligase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795553(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 rogid:0kkK0a8V2P0I5n8rknJF0yJwqcQ882 intact-crc:FB80A6FAFE96B649|rigid:TzgOFogyPsHJoYYR/XsZKhASgA0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X3 uniprotkb:Q72F92 intact:EBI-10067439|ensemblbacteria:AAS96697 intact:EBI-10065677|ensemblbacteria:AAS94805 psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067523|imex:IM-22740-138 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.97" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 intact-crc:4847BF89AC89B72E|rigid:fL/cfANo0smiiucFKAaSpwcMvFo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X3 uniprotkb:Q729X1 intact:EBI-10067439|ensemblbacteria:AAS96697 intact:EBI-10067436|ensemblbacteria:AAS96699 psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:q729x1_desvh(display_long)|uniprotkb:DVU_2226(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067523|imex:IM-22740-138 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_011439.1|refseq:WP_010939501.1|ensemblbacteria:AAS96699(transcript)|ensemblbacteria:DVU_2226(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016874"(ligase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795553(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 rogid:0kkK0a8V2P0I5n8rknJF0yJwqcQ882 intact-crc:4847BF89AC89B72E|rigid:fL/cfANo0smiiucFKAaSpwcMvFo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729X3 uniprotkb:Q729X2 intact:EBI-10067439|ensemblbacteria:AAS96697 intact:EBI-10067430|ensemblbacteria:AAS96698 psi-mi:q729x3_desvh(display_long)|uniprotkb:DVU_2224(locus name) psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067523|imex:IM-22740-138 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011437.1|refseq:WP_010939499.1|ensemblbacteria:AAS96697(transcript)|ensemblbacteria:DVU_2224(gene)|entrezgene/locuslink:2795551(identity) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:2tIH6UZN3KI/YRrTZ6H9QYDUmVM882 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 intact-crc:4847BF89AC89B72E|rigid:fL/cfANo0smiiucFKAaSpwcMvFo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72A53 uniprotkb:Q72C77 intact:EBI-10067563|ensemblbacteria:AAS96617 intact:EBI-10067567|ensemblbacteria:AAS95885 psi-mi:q72a53_desvh(display_long)|uniprotkb:DVU_2144(locus name)|uniprotkb:gap-2(gene name)|psi-mi:gap-2(display_short) psi-mi:q72c77_desvh(display_long)|uniprotkb:DVU_1407(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067580|imex:IM-22740-141 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010939421.1|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:YP_011357.1|ensemblbacteria:AAS96617(transcript)|ensemblbacteria:DVU_2144(gene)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0016620"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR036291|entrezgene/locuslink:2794223(identity) interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_010626.1|refseq:WP_010938700.1|ensemblbacteria:AAS95885(transcript)|ensemblbacteria:DVU_1407(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034457|entrezgene/locuslink:2794659(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:mnhUR9jhbpL2tSACKeOzSSgcQFs882 rogid:7iprsdbeWi0a7RGozDHsCB5CO9Q882 intact-crc:CD53B59BB633D019|rigid:j+fcN+SlqKaD2O5JV5/AkIqvkQ0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72A58 uniprotkb:Q729V7 intact:EBI-10067393|ensemblbacteria:AAS96612 intact:EBI-10064945|ensemblbacteria:AAS96713 psi-mi:q72a58_desvh(display_long)|uniprotkb:DVU_2139(locus name) psi-mi:q729v7_desvh(display_long)|uniprotkb:DVU_2240(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067606|imex:IM-22740-143 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000286(Histone deacetylase superfamily)|interpro:IPR023801|refseq:YP_011352.1|refseq:WP_010939416.1|ensemblbacteria:AAS96612(transcript)|ensemblbacteria:DVU_2139(gene)|interpro:IPR023696|interpro:IPR037138|entrezgene/locuslink:2794218(identity) interpro:IPR002821(Hydantoinase/oxoprolinase)|interpro:IPR008040(Hydantoinaseoxoprolinase, N-terminal)|refseq:YP_011453.1|refseq:WP_010939515.1|ensemblbacteria:AAS96713(transcript)|ensemblbacteria:DVU_2240(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR043129|entrezgene/locuslink:2795392(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:wIrpH05ijl4wwiq8kzb2PBhwt44882 rogid:lY4GJvddii/woep18tcb6guNssA882 intact-crc:92E80D24B05FAC0E|rigid:+vcnzsaIeucH+yZhK8DzXBVGtbM false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AA4 uniprotkb:Q72AA3 intact:EBI-10067658|ensemblbacteria:AAS96566 intact:EBI-10067665|ensemblbacteria:AAS96567 psi-mi:q72aa4_desvh(display_long)|uniprotkb:DVU_2093(locus name)|uniprotkb:thiH(gene name)|psi-mi:thiH(display_short) psi-mi:q72aa3_desvh(display_long)|uniprotkb:DVU_2094(locus name)|uniprotkb:thiG(gene name)|psi-mi:thiG(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067679|imex:IM-22740-147 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010722(Biotin and thiamin synthesis associated)|interpro:IPR012726(Thiazole biosynthesis ThiH)|refseq:YP_011306.1|refseq:WP_010939370.1|ensemblbacteria:AAS96566(transcript)|ensemblbacteria:DVU_2093(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR034428|entrezgene/locuslink:2795469(identity) interpro:IPR008867(Thiazole biosynthesis)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:WP_010939371.1|refseq:YP_011307.1|ensemblbacteria:AAS96567(transcript)|ensemblbacteria:DVU_2094(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:1990107"(thiazole synthase activity)|interpro:IPR033983|entrezgene/locuslink:2795470(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:wfS251/hAHdZ2zy6jozSvp8FKgc882 rogid:nwI9TbvedKsctIY5UofhF0JPPl4882 intact-crc:DB3222F35710177C|rigid:bmy/5OEs5uFtbjkpZH4RI82k3Qg false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D36 uniprotkb:Q72AA6 intact:EBI-10067699|ensemblbacteria:AAS95574 intact:EBI-10067695|ensemblbacteria:AAS96564 psi-mi:arly_desvh(display_long)|uniprotkb:Arginosuccinase(gene name synonym)|uniprotkb:DVU_1094(locus name)|uniprotkb:argH(gene name)|psi-mi:argH(display_short) psi-mi:q72aa6_desvh(display_long)|uniprotkb:Thiamine-phosphate pyrophosphorylase(gene name synonym)|uniprotkb:thiE(gene name synonym)|uniprotkb:DVU_2091(locus name)|uniprotkb:thiE-1(gene name)|psi-mi:thiE-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067713|imex:IM-22740-149 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000362(Fumarate lyase)|interpro:IPR008948(L-Aspartase-like)|interpro:IPR009049(Argininosuccinate lyase)|interpro:IPR020557|interpro:IPR022761|interpro:IPR024083|interpro:IPR029419|refseq:YP_010315.1|refseq:WP_010938393.1|ensemblbacteria:AAS95574(transcript)|ensemblbacteria:DVU_1094(gene)|go:"GO:0004056"(argininosuccinate lyase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0042450"(arginine biosynthetic process via ornithine)|entrezgene/locuslink:2794073(identity) interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR022998|refseq:YP_011304.1|refseq:WP_010939368.1|ensemblbacteria:AAS96564(transcript)|ensemblbacteria:DVU_2091(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004789"(thiamine-phosphate diphosphorylase activity)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|interpro:IPR034291|interpro:IPR036206|entrezgene/locuslink:2793545(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:0xiCHW8HKPNzkOA0ytfrjBwB2n0882 rogid:BasX9DyWq68fhggEjrtHYntLy6w882 intact-crc:1B1A4BFF2D7ED9AA|rigid:zIZak4yaHL0ES8mTRnaE45NjUT0 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B90 uniprotkb:Q72AI0 intact:EBI-10067827|ensemblbacteria:AAS96223 intact:EBI-10067821|ensemblbacteria:AAS96489 psi-mi:q72b90_desvh(display_long)|uniprotkb:DVU_1746(locus name) psi-mi:q72ai0_desvh(display_long)|uniprotkb:DVU_2014(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067840|imex:IM-22740-156 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001525(C-5 cytosine-specific DNA methylase)|interpro:IPR018117|interpro:IPR029063|refseq:YP_010964.1|refseq:WP_010939034.1|ensemblbacteria:AAS96223(transcript)|ensemblbacteria:DVU_1746(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|entrezgene/locuslink:2795849(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR008254(Flavodoxin/nitric oxide synthase)|interpro:IPR016440(Rubredoxin-oxygen oxidoreductase)|interpro:IPR029039|refseq:YP_011230.1|refseq:WP_010939297.1|ensemblbacteria:AAS96489(transcript)|ensemblbacteria:DVU_2014(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0010181"(FMN binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036866|entrezgene/locuslink:2796736(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.66" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:5a6bQ7+vE7/Tqc8NwCBf2zrQk50882 rogid:Uihzz7VA6Rbj78fFDq/njdaV68w882 intact-crc:086FDB11B500255E|rigid:aWKIxC31XBQIAJIkWgITeNgtoyY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AL2 uniprotkb:Q72DA8 intact:EBI-10067873|ensemblbacteria:AAS96456 intact:EBI-10067870|ensemblbacteria:AAS95501 psi-mi:q72al2_desvh(display_long)|uniprotkb:DVU_1980(locus name) psi-mi:q72da8_desvh(display_long)|uniprotkb:DVU_1021(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067889|imex:IM-22740-159 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_011197.1|refseq:WP_010939266.1|ensemblbacteria:AAS96456(transcript)|ensemblbacteria:DVU_1980(gene)|entrezgene/locuslink:2793786(identity) interpro:IPR000825(SUF system FeS cluster assembly, SufBD)|refseq:YP_010242.1|refseq:WP_010938320.1|ensemblbacteria:AAS95501(transcript)|ensemblbacteria:DVU_1021(gene)|go:"GO:0016226"(iron-sulfur cluster assembly)|interpro:IPR037284|entrezgene/locuslink:2793744(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.51" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:C3yBg70czjJJIBX5MlhWt5IgqsE882 rogid:fpheqrH7wLrgIp+jXGiRXV9K8yY882 intact-crc:9455A5F866EC7F04|rigid:XIvLjTjWGVckPbUqGEHg5pDOyKs false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AP1 uniprotkb:Q72AP2 intact:EBI-10067921|ensemblbacteria:AAS96427 intact:EBI-10067915|ensemblbacteria:AAS96426 psi-mi:q72ap1_desvh(display_long)|uniprotkb:Indolepyruvate ferredoxin oxidoreductase subunit alpha(gene name synonym)|uniprotkb:DVU_1951(locus name) psi-mi:q72ap2_desvh(display_long)|uniprotkb:DVU_1950(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10067934|imex:IM-22740-162 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR017721(Indolepyruvate ferredoxin oxidoreductase, alpha subunit)|interpro:IPR029061|refseq:WP_010939237.1|refseq:YP_011168.1|ensemblbacteria:AAS96427(transcript)|ensemblbacteria:DVU_1951(gene)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0043805"(indolepyruvate ferredoxin oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2796186(identity) interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:YP_011167.1|refseq:WP_010939236.1|ensemblbacteria:AAS96426(transcript)|ensemblbacteria:DVU_1950(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|entrezgene/locuslink:2796185(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:lUDGwTlHt7ECY7zmUCEGEf7kBNc882 rogid:XIFvbMdm9uLfPz0ytgOCBaOkzXI882 intact-crc:8F5191FC6E010B72|rigid:bYw5rMpZYYcAJaehzFHvpTWDxpA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727B7 uniprotkb:Q72AR1 intact:EBI-10068027|ensemblbacteria:AAS97410 intact:EBI-10068033|ensemblbacteria:AAS96407 psi-mi:q727b7_desvh(display_long)|uniprotkb:DVU_2938(locus name) psi-mi:q72ar1_desvh(display_long)|uniprotkb:DVU_1931(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068046|imex:IM-22740-168 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002708(Protein of unknown function DUF39)|refseq:YP_012150.1|refseq:WP_010940198.1|ensemblbacteria:AAS97410(transcript)|ensemblbacteria:DVU_2938(gene)|entrezgene/locuslink:2793976(identity) interpro:IPR017896|interpro:IPR017900|interpro:IPR018449|refseq:YP_011148.1|refseq:WP_010939217.1|ensemblbacteria:AAS96407(transcript)|ensemblbacteria:DVU_1931(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795308(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Yh3Az4Z6+Fja24xtMu0M+SurKtI882 rogid:37jX9UuPSQSj+NomyPZU1IsJ7rk882 intact-crc:8E65F633A829EB16|rigid:UOsJUIQLncXuurFf4CYkm1AeOz8 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BM3 uniprotkb:Q72AR5 intact:EBI-10068066|ensemblbacteria:AAS96090 intact:EBI-10068062|ensemblbacteria:AAS96403 psi-mi:q72bm3_desvh(display_long)|uniprotkb:DVU_1612(locus name) psi-mi:syi_desvh(display_long)|uniprotkb:Isoleucyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_1927(locus name)|uniprotkb:ileS(gene name)|psi-mi:ileS(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068079|imex:IM-22740-170 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002912(Amino acid-binding ACT)|refseq:YP_010831.1|refseq:WP_010938903.1|ensemblbacteria:AAS96090(transcript)|ensemblbacteria:DVU_1612(gene)|entrezgene/locuslink:2796065(identity) interpro:IPR033708|interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002301(Isoleucyl-tRNA synthetase, class Ia)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR010663(DNA glycosylase/AP lyase and isoleucyl tRNA synthetase, zinc finger domain)|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR023585|refseq:YP_011144.1|refseq:WP_010939213.1|ensemblbacteria:AAS96403(transcript)|ensemblbacteria:DVU_1927(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004822"(isoleucine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006428"(isoleucyl-tRNA aminoacylation)|go:"GO:0008270"(zinc ion binding)|entrezgene/locuslink:2795304(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.79" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:cUPUKCp7Aoyi1bdGib7iFptt9S0882 rogid:rwjMF/EMU9GtBS0Yg5InqDcT5HU882 intact-crc:28FF0BB3D6AA7A40|rigid:t2ezglGIyml1fnszYrmhlFqBtGc false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C12 uniprotkb:Q72AS3 intact:EBI-10068160|ensemblbacteria:AAS95950 intact:EBI-9012330 psi-mi:q72c12_desvh(display_long)|uniprotkb:DVU_1472(locus name) psi-mi:q72as3_desvh(display_long)|uniprotkb:hysA(gene name)|psi-mi:hysA(display_short)|uniprotkb:DVU_1918(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068176|imex:IM-22740-176 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_011792370.1|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|ensemblbacteria:AAS95950(transcript)|ensemblbacteria:DVU_1472(gene)|interpro:IPR041699|entrezgene/locuslink:2794141(identity) refseq:WP_010939204.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001501(Nickel-dependent hydrogenase, large subunit)|interpro:IPR018194|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011135.1|interpro:IPR029014|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793334(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:HXduubtYgFDudVqnqaHL/EtV2nE882 rogid:Ne0X+hwF75h49P+26zYwEXd8AVk882 intact-crc:12E854CAC4E2DA3D|rigid://epB9WZ8nKLSDogQIOdR3p4J5Y false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS2 uniprotkb:Q72AL8 intact:EBI-10066241|ensemblbacteria:AAS96395 intact:EBI-10066244|ensemblbacteria:AAS96450 psi-mi:q72as2_desvh(display_long)|uniprotkb:DVU_1919(locus name) psi-mi:q72al8_desvh(display_long)|uniprotkb:DVU_1974(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068143|imex:IM-22740-174 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000671(Peptidase A31, hydrogen uptake protein)|interpro:IPR023430|refseq:YP_011136.1|refseq:WP_010939205.1|ensemblbacteria:AAS96395(transcript)|ensemblbacteria:DVU_1919(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008233"(peptidase activity)|entrezgene/locuslink:2793335(identity) interpro:IPR023753|refseq:YP_011191.1|refseq:WP_010939260.1|ensemblbacteria:AAS96450(transcript)|ensemblbacteria:DVU_1974(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036188|entrezgene/locuslink:2795988(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:UPHJGAF+FsaEQEpiIkOGiSMdKbA882 rogid:iz7G+27COBziXzPRsyHptaObtAE882 intact-crc:5A1BD2D5FBC8469F|rigid:uXe3ESvOiZNYDM0yB0BG5kzAefk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AS2 uniprotkb:Q727C0 intact:EBI-10066241|ensemblbacteria:AAS96395 intact:EBI-10066250|ensemblbacteria:AAS97407 psi-mi:q72as2_desvh(display_long)|uniprotkb:DVU_1919(locus name) psi-mi:gpma_desvh(display_long)|uniprotkb:gpm(gene name synonym)|uniprotkb:DVU_2935(locus name)|uniprotkb:gpmA(gene name)|psi-mi:gpmA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068143|imex:IM-22740-174 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000671(Peptidase A31, hydrogen uptake protein)|interpro:IPR023430|refseq:YP_011136.1|refseq:WP_010939205.1|ensemblbacteria:AAS96395(transcript)|ensemblbacteria:DVU_1919(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008233"(peptidase activity)|entrezgene/locuslink:2793335(identity) interpro:IPR001345(Phosphoglycerate/bisphosphoglycerate mutase)|interpro:IPR005952(Phosphoglycerate mutase 1)|interpro:IPR013078(Phosphoglycerate mutase)|interpro:IPR029033|refseq:YP_012147.1|refseq:WP_010940195.1|ensemblbacteria:AAS97407(transcript)|ensemblbacteria:DVU_2935(gene)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0046538"(2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity)|entrezgene/locuslink:2793973(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:UPHJGAF+FsaEQEpiIkOGiSMdKbA882 rogid:+bQP8/z+NmcGQjtcM5ZfLItjzVo882 intact-crc:5A1BD2D5FBC8469F|rigid:uXe3ESvOiZNYDM0yB0BG5kzAefk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AR8 uniprotkb:Q72F89 intact:EBI-10068099|ensemblbacteria:AAS96400 intact:EBI-10068092|ensemblbacteria:AAS94808 psi-mi:q72ar8_desvh(display_long)|uniprotkb:DVU_1924(locus name)|uniprotkb:hypC(gene name)|psi-mi:hypC(display_short) psi-mi:q72f89_desvh(display_long)|uniprotkb:DVU_0325(locus name)|uniprotkb:hypD(gene name)|psi-mi:hypD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068113|imex:IM-22740-172 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001109("Hydrogenase expression/formation protein (HUPF/HYPC)")|refseq:YP_011141.1|refseq:WP_010939210.1|ensemblbacteria:AAS96400(transcript)|ensemblbacteria:DVU_1924(gene)|entrezgene/locuslink:2793340(identity) interpro:IPR002780(Hydrogenase formation HypD protein)|refseq:YP_009549.1|refseq:WP_010937632.1|ensemblbacteria:AAS94808(transcript)|ensemblbacteria:DVU_0325(gene)|go:"GO:0046872"(metal ion binding)|interpro:IPR042243|interpro:IPR042244|entrezgene/locuslink:2794327(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:jQ67NXN/qOVP9dkMPrWZC15RQx8882 rogid:1a0X/rE8bnCMqYTDpcVesfb+F2w882 intact-crc:86092810AA43A4AC|rigid:cbxaderP3AzRW0hCCCLlQB5QeHY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q3V891 uniprotkb:Q72AS4 intact:EBI-10068189|ensemblbacteria:AAS96384 intact:EBI-9012326|ensemblbacteria:AAS96393 psi-mi:pdxj_desvh(display_long)|uniprotkb:DVU_1908(locus name)|uniprotkb:pdxJ(gene name)|psi-mi:pdxJ(display_short) psi-mi:q72as4_desvh(display_long)|uniprotkb:hysB(gene name)|psi-mi:hysB(display_short)|uniprotkb:DVU_1917(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068206|imex:IM-22740-178 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004569("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ")|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_011125.1|refseq:WP_010939194.1|ensemblbacteria:AAS96384(transcript)|ensemblbacteria:DVU_1908(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0033856"(pyridoxine 5'-phosphate synthase activity)|interpro:IPR036130|entrezgene/locuslink:2793681(identity) refseq:WP_010939203.1|rcsb pdb:5JSH|rcsb pdb:5JSK|rcsb pdb:5JSU|rcsb pdb:5JSY|rcsb pdb:5JT1|rcsb pdb:6Z7R|rcsb pdb:6Z8J|rcsb pdb:6Z8M|rcsb pdb:6Z8O|rcsb pdb:6Z9G|rcsb pdb:6Z9O|rcsb pdb:6ZA1|interpro:IPR001821([Ni-Fe]-hydrogenase, small subunit)|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR019546|interpro:IPR027394|rcsb pdb:2WPN|rcsb pdb:3ZE6|rcsb pdb:3ZE7|rcsb pdb:3ZE8|rcsb pdb:3ZE9|rcsb pdb:3ZEA|refseq:YP_011134.1|interpro:IPR037024|interpro:IPR037148|ensemblbacteria:AAS96393(transcript)|ensemblbacteria:DVU_1917(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0009375"(ferredoxin hydrogenase complex)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0047806"(cytochrome-c3 hydrogenase activity)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|rcsb pdb:6RTP|rcsb pdb:6RU9|rcsb pdb:6RUC|entrezgene/locuslink:2793333(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:/DqexomS5wWjEd6c27pBE+pkYY8882 rogid:cFMZoNAlsTxUdQceJ2E0f3gFhhE882 intact-crc:3A3D407383A852F6|rigid:LCaYNbJvARXAfjF25MOAy8dHhuM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AU7 uniprotkb:Q72BR3 intact:EBI-10068278|ensemblbacteria:AAS96369 intact:EBI-10068281|ensemblbacteria:AAS96049 psi-mi:q72au7_desvh(display_long)|uniprotkb:DVU_1893(locus name) psi-mi:q72br3_desvh(display_long)|uniprotkb:ATP-dependent helicase Rho(gene name synonym)|uniprotkb:DVU_1571(locus name)|uniprotkb:rho(gene name)|psi-mi:rho(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068298|imex:IM-22740-183 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|refseq:YP_011110.1|refseq:WP_010939179.1|ensemblbacteria:AAS96369(transcript)|ensemblbacteria:DVU_1893(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0030163"(protein catabolic process)|interpro:IPR041699|entrezgene/locuslink:2794704(identity) interpro:IPR041703|refseq:WP_049758073.1|interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004665(Transcription termination factor Rho)|interpro:IPR011112(Rho termination factor, N-terminal)|interpro:IPR011113(Rho termination factor, RNA-binding)|interpro:IPR011129(Cold shock protein)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR027417|ensemblbacteria:AAS96049(transcript)|ensemblbacteria:DVU_1571(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004386"(helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0008186"(ATP-dependent activity, acting on RNA)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036269|entrezgene/locuslink:2793462(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.37" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:NUbkMVWr6dVL8mq4rNDnUP61/uY882 rogid:nmBFGDLwcKgopq/FKRbe80wgx+0882 intact-crc:3AF2FB5FE47EF85C|rigid:ldyo2Om81lADsyKvHbkJ0pKA0MY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DX1 uniprotkb:Q72AV5 intact:EBI-10068330|ensemblbacteria:AAS95288 intact:EBI-10068341|ensemblbacteria:AAS96361 psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:gatb_desvh(display_long)|uniprotkb:DVU_1885(locus name)|uniprotkb:gatB(gene name)|psi-mi:gatB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068359|imex:IM-22740-186 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928|entrezgene/locuslink:2796531(identity) interpro:IPR042114|interpro:IPR023168|interpro:IPR003789(GatB/Yqey)|interpro:IPR004413("Glutamyl-tRNA(Gln) amidotransferase B subunit")|interpro:IPR006075(GatB N-terminal region)|interpro:IPR017958|interpro:IPR017959|interpro:IPR018027|refseq:YP_011102.1|refseq:WP_010939171.1|ensemblbacteria:AAS96361(transcript)|ensemblbacteria:DVU_1885(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|entrezgene/locuslink:2793554(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 rogid:5dDsK9dmzftNNeagZxDm1pWlmBU882 intact-crc:CF8F56F7D9E3071C|rigid:5Mi4jUeLk6+jNzVHTklIrSqFysM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DR5 uniprotkb:Q72B00 intact:EBI-10068478|ensemblbacteria:AAS95344 intact:EBI-10068484|ensemblbacteria:AAS96316 psi-mi:q72dr5_desvh(display_long)|uniprotkb:DVU_0864(locus name) psi-mi:tsad_desvh(display_long)|uniprotkb:N6-L-threonylcarbamoyladenine synthase(gene name synonym)|uniprotkb:gcp(gene name synonym)|uniprotkb:"t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD"(gene name synonym)|uniprotkb:tRNA threonylcarbamoyladenosine biosynthesis protein TsaD(gene name synonym)|uniprotkb:DVU_1840(locus name)|uniprotkb:tsaD(gene name)|psi-mi:tsaD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068498|imex:IM-22740-194 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000905(Peptidase M22, glycoprotease)|interpro:IPR022496|refseq:YP_010085.1|refseq:WP_010938163.1|ensemblbacteria:AAS95344(transcript)|ensemblbacteria:DVU_0864(gene)|go:"GO:0002949"(tRNA threonylcarbamoyladenosine modification)|go:"GO:0008233"(peptidase activity)|interpro:IPR043129|entrezgene/locuslink:2796161(identity) interpro:IPR000905(Peptidase M22, glycoprotease)|interpro:IPR017860|interpro:IPR017861|interpro:IPR022450|refseq:YP_011057.1|refseq:WP_010939126.1|ensemblbacteria:AAS96316(transcript)|ensemblbacteria:DVU_1840(gene)|go:"GO:0002949"(tRNA threonylcarbamoyladenosine modification)|go:"GO:0005506"(iron ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0061711"("N(6)-L-threonylcarbamoyladenine synthase activity")|interpro:IPR043129|entrezgene/locuslink:2796474(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:g2lFoirIYGplDml+E1YZ5TRZOwk882 rogid:D0WWzs3UvatBRfi2m4zNX5zVwfc882 intact-crc:570453D55A4349C6|rigid:1Hb6zfh/l8E+y/43A0Gpa6elbhA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AZ0 uniprotkb:Q72CB5 intact:EBI-10068438|ensemblbacteria:AAS96326 intact:EBI-10068444|ensemblbacteria:AAS95846 psi-mi:q72az0_desvh(display_long)|uniprotkb:DVU_1850(locus name) psi-mi:q72cb5_desvh(display_long)|uniprotkb:DVU_1368(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068461|imex:IM-22740-192 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|refseq:YP_011067.1|refseq:WP_010939136.1|ensemblbacteria:AAS96326(transcript)|ensemblbacteria:DVU_1850(gene)|entrezgene/locuslink:2795913(identity) interpro:IPR001763(Rhodanese-like)|interpro:IPR016156(FAD/NAD-linked reductase, dimerisation)|interpro:IPR023753|refseq:YP_010587.1|refseq:WP_010938663.1|ensemblbacteria:AAS95846(transcript)|ensemblbacteria:DVU_1368(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|interpro:IPR036873|entrezgene/locuslink:2795092(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.65" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:NtrIYgxoDaITCFYFa7oAoQ8NcQ8882 rogid:zAfVANYX4Q79NnmesRRLpD8kUXA882 intact-crc:26CD3B941B930791|rigid:rbbEk8Sse6ybY4GMLrxQqmBUIeE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AZ0 uniprotkb:Q72B50 intact:EBI-10068438|ensemblbacteria:AAS96326 intact:EBI-10067283|ensemblbacteria:AAS96265 psi-mi:q72az0_desvh(display_long)|uniprotkb:DVU_1850(locus name) psi-mi:q72b50_desvh(display_long)|uniprotkb:Sigma-70(gene name synonym)|uniprotkb:DVU_1788(locus name)|uniprotkb:rpoD(gene name)|psi-mi:rpoD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068461|imex:IM-22740-192 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|refseq:YP_011067.1|refseq:WP_010939136.1|ensemblbacteria:AAS96326(transcript)|ensemblbacteria:DVU_1850(gene)|entrezgene/locuslink:2795913(identity) interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007127(RNA polymerase sigma factor 70, region 1.1)|interpro:IPR007624(RNA polymerase sigma-70 region 3)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR009042(RNA polymerase sigma-70 region 1.2)|interpro:IPR012760(RNA polymerase sigma factor RpoD, C-terminal)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|interpro:IPR028630|refseq:YP_011006.1|refseq:WP_010939076.1|ensemblbacteria:AAS96265(transcript)|ensemblbacteria:DVU_1788(gene)|go:"GO:0001123"|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016987"(sigma factor activity)|interpro:IPR036388|interpro:IPR042189|entrezgene/locuslink:2793314(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.52" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:NtrIYgxoDaITCFYFa7oAoQ8NcQ8882 rogid:uXlgHdylMF0gkzY6Dq/5S1/2Dzw882 intact-crc:26CD3B941B930791|rigid:rbbEk8Sse6ybY4GMLrxQqmBUIeE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72AT3 uniprotkb:Q72B12 intact:EBI-10068534|ensemblbacteria:AAS96383 intact:EBI-10068531|ensemblbacteria:AAS96304 psi-mi:q72at3_desvh(display_long)|uniprotkb:DVU_1907(locus name)|uniprotkb:ugd(gene name)|psi-mi:ugd(display_short) psi-mi:q72b12_desvh(display_long)|uniprotkb:DVU_1827(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068548|imex:IM-22740-197 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001732(UDP-glucose/GDP-mannose dehydrogenase, N-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR014026(UDP-glucose/GDP-mannose dehydrogenase, dimerisation)|interpro:IPR014027(UDP-glucose/GDP-mannose dehydrogenase, C-terminal)|interpro:IPR017476(Nucleotide sugar dehydrogenase)|interpro:IPR028357|refseq:YP_011124.1|refseq:WP_010939193.1|ensemblbacteria:AAS96383(transcript)|ensemblbacteria:DVU_1907(gene)|go:"GO:0000271"(polysaccharide biosynthetic process)|go:"GO:0003979"(UDP-glucose 6-dehydrogenase activity)|go:"GO:0006065"(UDP-glucuronate biosynthetic process)|go:"GO:0051287"(NAD binding)|interpro:IPR036220|interpro:IPR036291|entrezgene/locuslink:2793680(identity) interpro:IPR002933(Peptidase M20)|interpro:IPR011650(Peptidase M20, dimerisation)|refseq:YP_011045.1|refseq:WP_010939114.1|ensemblbacteria:AAS96304(transcript)|ensemblbacteria:DVU_1827(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036264|entrezgene/locuslink:2793488(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.93" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:DlaZgne2xG/LcOH7et/EfWEYUd0882 rogid:McvcaVSCx3yCOY4vwFS4oq6ucVc882 intact-crc:944785310D230FBC|rigid:g5dhN8HsQqxhncuMxcQ1Oj0GSn4 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B17 uniprotkb:Q72B16 intact:EBI-10068561|ensemblbacteria:AAS96299 intact:EBI-10068314|ensemblbacteria:AAS96300 psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068601|imex:IM-22740-200 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2793483(identity) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793484(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 intact-crc:3BCDC5BDE5DE769C|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B17 uniprotkb:Q72B18 intact:EBI-10068561|ensemblbacteria:AAS96299 intact:EBI-10068567|ensemblbacteria:AAS96298 psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068601|imex:IM-22740-200 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2793483(identity) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485|entrezgene/locuslink:2793482(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 intact-crc:3BCDC5BDE5DE769C|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B18 uniprotkb:Q72B17 intact:EBI-10068567|ensemblbacteria:AAS96298 intact:EBI-10068561|ensemblbacteria:AAS96299 psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:q72b17_desvh(display_long)|uniprotkb:DVU_1822(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068635|imex:IM-22740-202 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485|entrezgene/locuslink:2793482(identity) interpro:IPR012375(Glutamate synthase, large subunit region 1 amidotransferase, putative)|interpro:IPR017932|interpro:IPR029055|refseq:YP_011040.1|refseq:WP_010939109.1|ensemblbacteria:AAS96299(transcript)|ensemblbacteria:DVU_1822(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2793483(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 rogid:KWke/oQ1qO0YU/9VUCEagwt1RPs882 intact-crc:05BFF073F2BAC6EA|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B18 uniprotkb:Q72B16 intact:EBI-10068567|ensemblbacteria:AAS96298 intact:EBI-10068314|ensemblbacteria:AAS96300 psi-mi:q72b18_desvh(display_long)|uniprotkb:DVU_1821(locus name) psi-mi:q72b16_desvh(display_long)|uniprotkb:DVU_1823(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068635|imex:IM-22740-202 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002489(Glutamate synthase, alpha subunit, C-terminal)|interpro:IPR012061(Glutamate synthase, large subunit region 3, putative)|refseq:YP_011039.1|refseq:WP_010939108.1|ensemblbacteria:AAS96298(transcript)|ensemblbacteria:DVU_1821(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR035710|interpro:IPR036485|entrezgene/locuslink:2793482(identity) interpro:IPR043578|interpro:IPR002932(Glutamate synthase, central-C)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR017896|interpro:IPR017900|interpro:IPR024188|refseq:YP_011041.1|refseq:WP_010939110.1|ensemblbacteria:AAS96300(transcript)|ensemblbacteria:DVU_1823(gene)|go:"GO:0004355"("glutamate synthase (NADPH) activity")|go:"GO:0006537"(glutamate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793484(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:qqAeOafLL+nGzzo89ASGpo5bn8Q882 rogid:BrAUW+9efaD8JwPP3PjgpcjdZUE882 intact-crc:05BFF073F2BAC6EA|rigid:BN93sWj1a56elD8PBwwbAo6Nwis false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B43 uniprotkb:Q72AL0 intact:EBI-10068679|ensemblbacteria:AAS96272 intact:EBI-10067497|ensemblbacteria:AAS96458 psi-mi:q72b43_desvh(display_long)|uniprotkb:DVU_1795(locus name)|uniprotkb:hup-3(gene name)|psi-mi:hup-3(display_short) psi-mi:q72al0_desvh(display_long)|uniprotkb:DVU_1982(locus name)|uniprotkb:rhlE(gene name)|psi-mi:rhlE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068701|imex:IM-22740-205 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|interpro:IPR020816|refseq:YP_011013.1|refseq:WP_010939083.1|ensemblbacteria:AAS96272(transcript)|ensemblbacteria:DVU_1795(gene)|go:"GO:0003677"(DNA binding)|entrezgene/locuslink:2793321(identity) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014014(RNA helicase, DEAD-box type, Q motif)|interpro:IPR027417|refseq:YP_011199.1|refseq:WP_010939268.1|ensemblbacteria:AAS96458(transcript)|ensemblbacteria:DVU_1982(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0016787"(hydrolase activity)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793788(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.84" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:5cQx/aWrXbSgzWsjOrE3XICa3P0882 rogid:zKmJjhrid6qDgJl5ptCURc+2Jfc882 intact-crc:0EAFDFB08918ACE4|rigid:OLU6ahGYzs4bCAYyY0upvhpXHW4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BE4 uniprotkb:Q72B90 intact:EBI-10068714|ensemblbacteria:AAS96169 intact:EBI-10067827|ensemblbacteria:AAS96223 psi-mi:q72be4_desvh(display_long)|uniprotkb:DVU_1692(locus name) psi-mi:q72b90_desvh(display_long)|uniprotkb:DVU_1746(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068738|imex:IM-22740-207 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010910.1|refseq:WP_010938981.1|ensemblbacteria:AAS96169(transcript)|ensemblbacteria:DVU_1692(gene)|entrezgene/locuslink:2795826(identity) interpro:IPR001525(C-5 cytosine-specific DNA methylase)|interpro:IPR018117|interpro:IPR029063|refseq:YP_010964.1|refseq:WP_010939034.1|ensemblbacteria:AAS96223(transcript)|ensemblbacteria:DVU_1746(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|entrezgene/locuslink:2795849(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.79" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:qV7vrqWwYWiVwQ8wUhS8O2b9EBc882 rogid:5a6bQ7+vE7/Tqc8NwCBf2zrQk50882 intact-crc:301AFC5CB2F61444|rigid:Gj2xG7rokWG/8/MVn8gBTFYrq7A false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA0 uniprotkb:Q72BI4 intact:EBI-10068791|ensemblbacteria:AAS95509 intact:EBI-10068795|ensemblbacteria:AAS96129 psi-mi:his8_desvh(display_long)|uniprotkb:Imidazole acetol-phosphate transaminase(gene name synonym)|uniprotkb:DVU_1029(locus name)|uniprotkb:hisC(gene name)|psi-mi:hisC(display_short) psi-mi:q72bi4_desvh(display_long)|uniprotkb:DVU_1652(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068808|imex:IM-22740-211 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001917(Aminotransferase, class-II, pyridoxal-phosphate binding site)|interpro:IPR004839(Aminotransferase, class I and II)|interpro:IPR005861(Histidinol-phosphate aminotransferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_010250.1|refseq:WP_010938328.1|ensemblbacteria:AAS95509(transcript)|ensemblbacteria:DVU_1029(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0004400"(histidinol-phosphate transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|entrezgene/locuslink:2794526(identity) interpro:IPR001310("Histidine triad (HIT) protein")|interpro:IPR011146(Histidine triad-like motif)|refseq:YP_010870.1|refseq:WP_010938941.1|ensemblbacteria:AAS96129(transcript)|ensemblbacteria:DVU_1652(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003824"(catalytic activity)|interpro:IPR036265|interpro:IPR039383|entrezgene/locuslink:2795923(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:H14oWaNYwas/HBMZFA+aT/uTER4882 rogid:HTnyryDrYOSFOU4rs8sDMPkeXqE882 intact-crc:0A9E9EE96CFA6BC0|rigid:VNi6bv7wCuyGBNJVr6dhSAq7K5Y false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BM2 uniprotkb:Q72BM1 intact:EBI-10068872|ensemblbacteria:AAS96091 intact:EBI-10068869|ensemblbacteria:AAS96092 psi-mi:q72bm2_desvh(display_long)|uniprotkb:DVU_1613(locus name) psi-mi:q72bm1_desvh(display_long)|uniprotkb:DVU_1614(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068885|imex:IM-22740-215 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR023753|ensemblbacteria:AAS96091(transcript)|ensemblbacteria:DVU_1613(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR036188|entrezgene/locuslink:2796066(identity) interpro:IPR017896|refseq:YP_010833.1|refseq:WP_010938905.1|ensemblbacteria:AAS96092(transcript)|ensemblbacteria:DVU_1614(gene)|entrezgene/locuslink:2796067(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.86" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:vlPLvBXh+vLx/zSeuoZh0pbwRZ0882 rogid:UHe+wbwxjBkpcf7Ie1lNUtmH54M882 intact-crc:1F320965AC97AC2E|rigid:azXOYBprCwUe7n6MDk4U6TC0kYQ false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BM5 uniprotkb:P62035 intact:EBI-10064938|ensemblbacteria:AAS96088 intact:EBI-10064948|ensemblbacteria:AAS96732 psi-mi:q72bm5_desvh(display_long)|uniprotkb:"NAD(+) synthase [glutamine-hydrolyzing]"(gene name synonym)|uniprotkb:DVU_1610(locus name)|uniprotkb:nadE(gene name)|psi-mi:nadE(display_short) psi-mi:y2259_desvh(display_long)|uniprotkb:DVU_2259(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10068928|imex:IM-22740-218 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|interpro:IPR003694(NAD+ synthase)|interpro:IPR014445("Glutamine-dependent NAD(+) synthetase, GAT region")|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR022310|refseq:YP_010829.1|refseq:WP_010938901.1|ensemblbacteria:AAS96088(transcript)|ensemblbacteria:DVU_1610(gene)|go:"GO:0003952"("NAD+ synthase (glutamine-hydrolyzing) activity")|go:"GO:0004359"(glutaminase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008795"(NAD+ synthase activity)|go:"GO:0009435"(NAD biosynthetic process)|interpro:IPR036526|entrezgene/locuslink:2796063(identity) interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|refseq:YP_011472.1|refseq:WP_010939534.1|ensemblbacteria:AAS96732(transcript)|ensemblbacteria:DVU_2259(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|entrezgene/locuslink:2794081(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:k4s4BfpX6SHtSSy2NSA4EAO8e6w882 rogid:vwq31bMVKWxbxjQkLoWk21tInLI882 intact-crc:575910B36AEF7770|rigid:HMjXHW1ogO2lzKGWFS0pos53MTo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q728G0 uniprotkb:Q72BU5 intact:EBI-10066697|ensemblbacteria:AAS97115 intact:EBI-10066693|ensemblbacteria:AAS96017 psi-mi:htpg_desvh(display_long)|uniprotkb:Heat shock protein HtpG(gene name synonym)|uniprotkb:High temperature protein G(gene name synonym)|uniprotkb:DVU_2643(locus name)|uniprotkb:htpG(gene name)|psi-mi:htpG(display_short) psi-mi:q72bu5_desvh(display_long)|uniprotkb:DVU_1539(locus name)|uniprotkb:glpX(gene name)|psi-mi:glpX(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069034|imex:IM-22740-224 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001404(Heat shock protein Hsp90)|interpro:IPR019805|interpro:IPR020568|interpro:IPR020575|refseq:YP_011855.1|refseq:WP_010939912.1|ensemblbacteria:AAS97115(transcript)|ensemblbacteria:DVU_2643(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR036890|interpro:IPR037196|entrezgene/locuslink:2795699(identity) interpro:IPR004464(GlpX)|refseq:YP_010758.1|refseq:WP_010938831.1|ensemblbacteria:AAS96017(transcript)|ensemblbacteria:DVU_1539(gene)|go:"GO:0006071"(glycerol metabolic process)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2793689(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:6csEfdF5q31N16FCWl6Buf9nsYA882 rogid:CT97gy9emJCEZP/QFHye+xB6Ccs882 intact-crc:1E5853F8221BAD35|rigid:3++j5J2hjYRcFsStPyWAltVEYeU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C18 uniprotkb:Q72C62 intact:EBI-10069101|ensemblbacteria:AAS95944 intact:EBI-10069095|ensemblbacteria:AAS95900 psi-mi:argb_desvh(display_long)|uniprotkb:N-acetyl-L-glutamate 5-phosphotransferase(gene name synonym)|uniprotkb:NAG kinase(gene name synonym)|uniprotkb:DVU_1466(locus name)|uniprotkb:argB(gene name)|psi-mi:argB(display_short) psi-mi:q72c62_desvh(display_long)|uniprotkb:DVU_1422(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069115|imex:IM-22740-228 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041727|interpro:IPR001048(Aspartate/glutamate/uridylate kinase)|interpro:IPR004662(Acetylglutamate kinase)|refseq:YP_010685.1|refseq:WP_010938759.1|ensemblbacteria:AAS95944(transcript)|ensemblbacteria:DVU_1466(gene)|go:"GO:0003991"(acetylglutamate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0042450"(arginine biosynthetic process via ornithine)|interpro:IPR036393|interpro:IPR037528|entrezgene/locuslink:2794884(identity) interpro:IPR006664(Outer membrane protein, bacterial)|interpro:IPR006665(Outer membrane protein, OmpA/MotB, C-terminal)|refseq:YP_010641.1|ensemblbacteria:AAS95900(transcript)|ensemblbacteria:DVU_1422(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR036465|interpro:IPR036737|entrezgene/locuslink:2794683(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.96" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:WaDuj48PU9x4seAA+Qxhg32Bfpc882 rogid:KFbYWndIiTApG8U8gbicQgf9HAU882 intact-crc:94A24C5CBB677997|rigid:hKLU0QCEhhetxbdpWf9USE61zcg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F07 uniprotkb:Q72C19 intact:EBI-10069134|ensemblbacteria:AAS94894 intact:EBI-10069131|ensemblbacteria:AAS95943 psi-mi:q72f07_desvh(display_long)|uniprotkb:DVU_0411(locus name) psi-mi:q72c19_desvh(display_long)|uniprotkb:DVU_1465(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069154|imex:IM-22740-230 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002201(Glycosyl transferase, family 9)|refseq:YP_009635.1|refseq:WP_010937718.1|ensemblbacteria:AAS94894(transcript)|ensemblbacteria:DVU_0411(gene)|go:"GO:0016757"(glycosyltransferase activity)|entrezgene/locuslink:2793712(identity) interpro:IPR024542|ensemblbacteria:AAS95943(transcript)|ensemblbacteria:DVU_1465(gene)|entrezgene/locuslink:2794883(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:ROZY+6+41AsAkCQGGPndYqv/J7c882 rogid:jFXTIvtFwRQLU8ge0uuMaAmRYWs882 intact-crc:A496A4E0A6E9A209|rigid:HgOoNZuZLATg7g+aySPgTZAuCEM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q726E7 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065191|ensemblbacteria:AAS97676 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q726e7_desvh(display_long)|uniprotkb:DVU_3206(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069192|imex:IM-22740-232 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR002695(AICARFT/IMPCHase bienzyme)|interpro:IPR016193(Cytidine deaminase-like)|interpro:IPR024051|refseq:YP_012416.1|ensemblbacteria:AAS97676(transcript)|ensemblbacteria:DVU_3206(gene)|go:"GO:0003937"(IMP cyclohydrolase activity)|go:"GO:0004643"(phosphoribosylaminoimidazolecarboxamide formyltransferase activity)|go:"GO:0006164"(purine nucleotide biosynthetic process)|entrezgene/locuslink:2796204(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:APwhcSZf99XUalF5DDE1C1Tye2s882 intact-crc:32FBB8630270EDB9|rigid:sGdG9gVDfRdJVu7+DzYX4oES390 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q729F0 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065740|ensemblbacteria:AAS96874 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q729f0_desvh(display_long)|uniprotkb:DVU_2401(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069192|imex:IM-22740-232 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_011614.1|refseq:WP_010939673.1|ensemblbacteria:AAS96874(transcript)|ensemblbacteria:DVU_2401(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2794486(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.27" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:7EqT70PI7U49vz4z+r0ndXIwtHk882 intact-crc:32FBB8630270EDB9|rigid:sGdG9gVDfRdJVu7+DzYX4oES390 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C29 uniprotkb:Q72A94 intact:EBI-10065571|ensemblbacteria:AAS95933 intact:EBI-10065907|ensemblbacteria:AAS96576 psi-mi:q72c29_desvh(display_long)|uniprotkb:DVU_1455(locus name) psi-mi:q72a94_desvh(display_long)|uniprotkb:DVU_2103(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069192|imex:IM-22740-232 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003743(Protein of unknown function DUF164)|refseq:YP_010674.1|refseq:WP_010938748.1|ensemblbacteria:AAS95933(transcript)|ensemblbacteria:DVU_1455(gene)|entrezgene/locuslink:2794822(identity) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR017896|interpro:IPR017900|interpro:IPR027417|refseq:YP_011316.1|refseq:WP_010939380.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|ensemblbacteria:AAS96576(transcript)|ensemblbacteria:DVU_2103(gene)|entrezgene/locuslink:2795479(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.35" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yXuorfVaTgrNg6qb2k6VYeUYayE882 rogid:bIlVXxSJZO2d9vZ2o9xs0d/Wo/Q882 intact-crc:32FBB8630270EDB9|rigid:sGdG9gVDfRdJVu7+DzYX4oES390 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C30 uniprotkb:Q72D36 intact:EBI-10069217|ensemblbacteria:AAS95932 intact:EBI-10067699|ensemblbacteria:AAS95574 psi-mi:ispdf_desvh(display_long)|uniprotkb:ispD(gene name synonym)|uniprotkb:DVU_1454(locus name)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short) psi-mi:arly_desvh(display_long)|uniprotkb:Arginosuccinase(gene name synonym)|uniprotkb:DVU_1094(locus name)|uniprotkb:argH(gene name)|psi-mi:argH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069238|imex:IM-22740-234 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|interpro:IPR029044|refseq:YP_010673.1|refseq:WP_010938747.1|ensemblbacteria:AAS95932(transcript)|ensemblbacteria:DVU_1454(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|interpro:IPR034683|interpro:IPR036571|entrezgene/locuslink:2794820(identity) interpro:IPR000362(Fumarate lyase)|interpro:IPR008948(L-Aspartase-like)|interpro:IPR009049(Argininosuccinate lyase)|interpro:IPR020557|interpro:IPR022761|interpro:IPR024083|interpro:IPR029419|refseq:YP_010315.1|refseq:WP_010938393.1|ensemblbacteria:AAS95574(transcript)|ensemblbacteria:DVU_1094(gene)|go:"GO:0004056"(argininosuccinate lyase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0042450"(arginine biosynthetic process via ornithine)|entrezgene/locuslink:2794073(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.59" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:09vx9flKicV2MNGXlhhB263lymE882 rogid:0xiCHW8HKPNzkOA0ytfrjBwB2n0882 intact-crc:4A1DFD4E45B9C183|rigid:5NdV2OL8AngnRCSBAwd0FpKQhWk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C30 uniprotkb:Q72DU3 intact:EBI-10069217|ensemblbacteria:AAS95932 intact:EBI-10069213|ensemblbacteria:AAS95316 psi-mi:ispdf_desvh(display_long)|uniprotkb:ispD(gene name synonym)|uniprotkb:DVU_1454(locus name)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short) psi-mi:trmd_desvh(display_long)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym)|uniprotkb:DVU_0836(locus name)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069238|imex:IM-22740-234 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|interpro:IPR029044|refseq:YP_010673.1|refseq:WP_010938747.1|ensemblbacteria:AAS95932(transcript)|ensemblbacteria:DVU_1454(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|interpro:IPR034683|interpro:IPR036571|entrezgene/locuslink:2794820(identity) interpro:IPR023148|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR019230|interpro:IPR029026|interpro:IPR029028|refseq:YP_010057.1|refseq:WP_010938137.1|ensemblbacteria:AAS95316(transcript)|ensemblbacteria:DVU_0836(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|entrezgene/locuslink:2794848(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:09vx9flKicV2MNGXlhhB263lymE882 rogid:JzxZzMGyF2NhZkiUkc1jEB/A1Ck882 intact-crc:4A1DFD4E45B9C183|rigid:5NdV2OL8AngnRCSBAwd0FpKQhWk false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C59 uniprotkb:Q72C60 intact:EBI-10069291|ensemblbacteria:AAS95903 intact:EBI-10069287|ensemblbacteria:AAS95902 psi-mi:gcspa_desvh(display_long)|uniprotkb:Glycine cleavage system P-protein subunit 1(gene name synonym)|uniprotkb:Glycine decarboxylase subunit 1(gene name synonym)|uniprotkb:"Glycine dehydrogenase (aminomethyl-transferring) subunit 1"(gene name synonym)|uniprotkb:DVU_1425(locus name)|uniprotkb:gcvPA(gene name)|psi-mi:gcvPA(display_short) psi-mi:q72c60_desvh(display_long)|uniprotkb:DVU_1424(locus name)|uniprotkb:gcvPB(gene name)|psi-mi:gcvPB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069308|imex:IM-22740-238 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020581|interpro:IPR023010|refseq:YP_010644.1|refseq:WP_010938718.1|ensemblbacteria:AAS95903(transcript)|ensemblbacteria:DVU_1425(gene)|go:"GO:0004375"("glycine dehydrogenase (decarboxylating) activity")|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019464"(glycine decarboxylation via glycine cleavage system)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|entrezgene/locuslink:2794686(identity) interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR020581|refseq:YP_010643.1|refseq:WP_010938717.1|ensemblbacteria:AAS95902(transcript)|ensemblbacteria:DVU_1424(gene)|go:"GO:0004375"("glycine dehydrogenase (decarboxylating) activity")|go:"GO:0006546"(glycine catabolic process)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|entrezgene/locuslink:2794685(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:NN8JwphJrH9Gj80Pv1v9BaEc82Y882 rogid:tXkD34WrNn4zSKZodVuNrlw8S6E882 intact-crc:6BF62A6E73126825|rigid:gBo3Vn7mNy47X489yyt4AlFfHwI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C36 uniprotkb:Q725K1 intact:EBI-10069258|ensemblbacteria:AAS95926 intact:EBI-10069261|ensemblbacteria:AAS97642 psi-mi:q72c36_desvh(display_long)|uniprotkb:DVU_1448(locus name) psi-mi:q725k1_desvh(display_long)|uniprotkb:DVU_3172(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069274|imex:IM-22740-236 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005646(Protein of unknown function DUF342)|refseq:YP_010667.1|refseq:WP_010938741.1|ensemblbacteria:AAS95926(transcript)|ensemblbacteria:DVU_1448(gene)|entrezgene/locuslink:2794575(identity) refseq:YP_012382.1|ensemblbacteria:AAS97642(transcript)|ensemblbacteria:DVU_3172(gene)|entrezgene/locuslink:2795877(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.52" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:gDI/xIyqhiES5rob2crd/ZufkzM882 rogid:G2KTBNQRG4Lwb95IqWUJv2CqVWA882 intact-crc:171A2E321E3443FB|rigid:tN90/G9GI9PzBjsadEbfzPNG83Y false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CB2 uniprotkb:Q725N2 intact:EBI-10069421|ensemblbacteria:AAS95849 intact:EBI-10069417|ensemblbacteria:AAS97861 psi-mi:q72cb2_desvh(display_long)|uniprotkb:DVU_1371(locus name) psi-mi:q725n2_desvh(display_long)|uniprotkb:DVU_3392(locus name)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069434|imex:IM-22740-245 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR023198|interpro:IPR006439(HAD-superfamily hydrolase, subfamily IA, variant 1)|interpro:IPR023214|refseq:YP_010590.1|refseq:WP_010938666.1|ensemblbacteria:AAS95849(transcript)|ensemblbacteria:DVU_1371(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR036412|interpro:IPR041492|entrezgene/locuslink:2793504(identity) interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|refseq:YP_012601.1|refseq:WP_010940646.1|ensemblbacteria:AAS97861(transcript)|ensemblbacteria:DVU_3392(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0006542"(glutamine biosynthetic process)|interpro:IPR036651|entrezgene/locuslink:2796411(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.97" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:BFJR5J68zjwhbf1zBApWrMy2XeM882 rogid:JUfX2e+Rr4oodTXJPIaNjmvWeOQ882 intact-crc:CBCEA620FCE907AD|rigid:2E2gdy2qu5cmEOeU3Upp/QXSs7k false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72C87 uniprotkb:Q72BF0 intact:EBI-10069359|ensemblbacteria:AAS95875 intact:EBI-10069353|ensemblbacteria:AAS96163 psi-mi:q72c87_desvh(display_long)|uniprotkb:DVU_1397(locus name)|uniprotkb:bfr(gene name)|psi-mi:bfr(display_short) psi-mi:q72bf0_desvh(display_long)|uniprotkb:DVU_1686(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069373|imex:IM-22740-242 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002024(Bacterioferritin)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|refseq:YP_010616.1|refseq:WP_010938692.1|ensemblbacteria:AAS95875(transcript)|ensemblbacteria:DVU_1397(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0006826"(iron ion transport)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|entrezgene/locuslink:2794797(identity) interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR008824(DNA helicase, Holliday junction RuvB type, N-terminal)|interpro:IPR008921(DNA polymerase III clamp loader subunit, C-terminal)|interpro:IPR021886|interpro:IPR027417|refseq:YP_010904.1|interpro:IPR032423|refseq:WP_010938975.1|ensemblbacteria:AAS96163(transcript)|ensemblbacteria:DVU_1686(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003677"(DNA binding)|go:"GO:0006260"(DNA replication)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0009378"(four-way junction helicase activity)|entrezgene/locuslink:2794914(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.61" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:/YEQxIIVEft2Xb4CEZccQMQlPoM882 rogid:Ztr2GDn8VxuIRhLODA0jfi/vW3Q882 intact-crc:6F82D62309885140|rigid:w/AcxmSaM9T3/dCgeH50uMqOPJc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72B50 uniprotkb:Q72CB5 intact:EBI-10067283|ensemblbacteria:AAS96265 intact:EBI-10068444|ensemblbacteria:AAS95846 psi-mi:q72b50_desvh(display_long)|uniprotkb:Sigma-70(gene name synonym)|uniprotkb:DVU_1788(locus name)|uniprotkb:rpoD(gene name)|psi-mi:rpoD(display_short) psi-mi:q72cb5_desvh(display_long)|uniprotkb:DVU_1368(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069464|imex:IM-22740-247 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007127(RNA polymerase sigma factor 70, region 1.1)|interpro:IPR007624(RNA polymerase sigma-70 region 3)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR009042(RNA polymerase sigma-70 region 1.2)|interpro:IPR012760(RNA polymerase sigma factor RpoD, C-terminal)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|interpro:IPR028630|refseq:YP_011006.1|refseq:WP_010939076.1|ensemblbacteria:AAS96265(transcript)|ensemblbacteria:DVU_1788(gene)|go:"GO:0001123"|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016987"(sigma factor activity)|interpro:IPR036388|interpro:IPR042189|entrezgene/locuslink:2793314(identity) interpro:IPR001763(Rhodanese-like)|interpro:IPR016156(FAD/NAD-linked reductase, dimerisation)|interpro:IPR023753|refseq:YP_010587.1|refseq:WP_010938663.1|ensemblbacteria:AAS95846(transcript)|ensemblbacteria:DVU_1368(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR036188|interpro:IPR036873|entrezgene/locuslink:2795092(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.53" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:uXlgHdylMF0gkzY6Dq/5S1/2Dzw882 rogid:zAfVANYX4Q79NnmesRRLpD8kUXA882 intact-crc:37F693F3BA9D1488|rigid:Hm0eSRVKgwNteO0NXEAXNWpxR1Q false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CN2 uniprotkb:P45573 intact:EBI-10064808|ensemblbacteria:AAS95729 intact:EBI-9017020|ensemblbacteria:AAS97248 psi-mi:q72cn2_desvh(display_long)|uniprotkb:DVU_1251(locus name) psi-mi:dsvc_desvh(display_long)|uniprotkb:dsvC(gene name)|psi-mi:dsvC(display_short)|uniprotkb:Desulfoviridin subunit gamma(gene name synonym)|uniprotkb:Hydrogensulfite reductase subunit gamma(gene name synonym)|uniprotkb:DVU_2776(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069595|imex:IM-22740-254 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010470.1|refseq:WP_010938547.1|ensemblbacteria:AAS95729(transcript)|ensemblbacteria:DVU_1251(gene)|entrezgene/locuslink:2795032(identity) ensemblbacteria:AAS97248(transcript)|ensemblbacteria:DVU_2776(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR043163|interpro:IPR007453(DsrC-like protein)|interpro:IPR025526|rcsb pdb:2V4J|refseq:YP_011988.1|refseq:WP_010940042.1|interpro:IPR042072|entrezgene/locuslink:2796326(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:543MQPkYMIzuko87WvT+PJxPUTY882 rogid:frGNa4/lDe/XYtvmdowqM0Kv9Co882 intact-crc:D48089B3399E9313|rigid:UDGhvPz3C3mKN3hNR4/ov18KkaQ false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72CT3 uniprotkb:P61940 intact:EBI-10069661|ensemblbacteria:AAS95678 intact:EBI-10065097|ensemblbacteria:AAS95676 psi-mi:q72ct3_desvh(display_long)|uniprotkb:DVU_1200(locus name)|uniprotkb:ribE(gene name)|psi-mi:ribE(display_short) psi-mi:risb_desvh(display_long)|uniprotkb:DVU_1198(locus name)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069675|imex:IM-22740-258 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001783(Lumazine-binding protein)|interpro:IPR017938|interpro:IPR023366|interpro:IPR026017|refseq:YP_010419.1|refseq:WP_010938496.1|ensemblbacteria:AAS95678(transcript)|ensemblbacteria:DVU_1200(gene)|go:"GO:0004746"(riboflavin synthase activity)|entrezgene/locuslink:2796657(identity) interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|refseq:YP_010417.1|refseq:WP_010938494.1|ensemblbacteria:AAS95676(transcript)|ensemblbacteria:DVU_1198(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR034964|interpro:IPR036467|entrezgene/locuslink:2796655(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:5eIJ31KrN5RDT2EIqiuLjkTefmQ882 rogid:maDso74tcrK7wLgu6rXwJEZeKhY882 intact-crc:1CFA817D4DAA08A2|rigid:Jszc9w+gc+KOlYtYjnzIamK+HKI false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D42 uniprotkb:Q72D43 intact:EBI-10069744|ensemblbacteria:AAS95568 intact:EBI-10069738|ensemblbacteria:AAS95567 psi-mi:q72d42_desvh(display_long)|uniprotkb:DVU_1088(locus name) psi-mi:q72d43_desvh(display_long)|uniprotkb:DVU_1087(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069757|imex:IM-22740-263 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010309.1|ensemblbacteria:AAS95568(transcript)|ensemblbacteria:DVU_1088(gene)|entrezgene/locuslink:2794067(identity) interpro:IPR002882(Protein of unknown function UPF0052 and CofD)|interpro:IPR027591|refseq:YP_010308.1|ensemblbacteria:AAS95567(transcript)|ensemblbacteria:DVU_1087(gene)|go:"GO:0043743"("LPPG:FO 2-phospho-L-lactate transferase activity")|entrezgene/locuslink:2794066(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:jwg3nrcFmmhBWaZ8QqdpmxAmYEo882 rogid:gE5MPWWXKfdBpm1Fy3WRz6a7sC4882 intact-crc:9E573D39C3243FC6|rigid:mhlGr9/hOZCasRO3By2pGRCrPig false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D47 uniprotkb:Q72D85 intact:EBI-10069791|ensemblbacteria:AAS95563 intact:EBI-10064794|ensemblbacteria:AAS95524 psi-mi:q72d47_desvh(display_long)|uniprotkb:DVU_1083(locus name)|uniprotkb:phoB(gene name)|psi-mi:phoB(display_short) psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069808|imex:IM-22740-266 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|refseq:YP_010304.1|refseq:WP_010938382.1|ensemblbacteria:AAS95563(transcript)|ensemblbacteria:DVU_1083(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR036388|interpro:IPR039420|entrezgene/locuslink:2794461(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yFYiEjQpo+W1HA/q7Up4GJF2UCM882 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 intact-crc:FE62E3554F2A4DFE|rigid:iHtQ7pnb7/6VPxkxk9WptAoWbzE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D52 uniprotkb:Q72DU1 intact:EBI-10069827|ensemblbacteria:AAS95558 intact:EBI-10069824|ensemblbacteria:AAS95318 psi-mi:q72d52_desvh(display_long)|uniprotkb:DVU_1078(locus name) psi-mi:q72du1_desvh(display_long)|uniprotkb:DVU_0838(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069847|imex:IM-22740-268 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038008|interpro:IPR001374(Single-stranded nucleic acid binding R3H)|refseq:YP_010299.1|refseq:WP_010938377.1|interpro:IPR032782|ensemblbacteria:AAS95558(transcript)|ensemblbacteria:DVU_1078(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR034079|interpro:IPR038247|interpro:IPR036867|interpro:IPR039247|entrezgene/locuslink:2794456(identity) interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR020627|refseq:YP_010059.1|refseq:WP_010938139.1|go:"GO:0003723"(RNA binding)|ensemblbacteria:AAS95318(transcript)|ensemblbacteria:DVU_0838(gene)|interpro:IPR015946(K homology-like, alpha/beta)|entrezgene/locuslink:2794850(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:07KwcaC+ALxj5tpd0LrHJTq/N/s882 rogid:zZAxDHv5dDKNL7qgkl41HiIwAH0882 intact-crc:576E6CBFFCD9D673|rigid:zAq7lh/xkp97rxai+aiVQzWK2oY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D52 uniprotkb:Q726Q1 intact:EBI-10069827|ensemblbacteria:AAS95558 intact:EBI-10069830|ensemblbacteria:AAS97526 psi-mi:q72d52_desvh(display_long)|uniprotkb:DVU_1078(locus name) psi-mi:q726q1_desvh(display_long)|uniprotkb:DVU_3055(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069847|imex:IM-22740-268 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038008|interpro:IPR001374(Single-stranded nucleic acid binding R3H)|refseq:YP_010299.1|refseq:WP_010938377.1|interpro:IPR032782|ensemblbacteria:AAS95558(transcript)|ensemblbacteria:DVU_1078(gene)|go:"GO:0003676"(nucleic acid binding)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR034079|interpro:IPR038247|interpro:IPR036867|interpro:IPR039247|entrezgene/locuslink:2794456(identity) interpro:IPR003029(S1, RNA binding)|interpro:IPR004659(Ribonuclease E and G)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019307|interpro:IPR022967|refseq:WP_010940314.1|refseq:YP_012266.1|ensemblbacteria:AAS97526(transcript)|ensemblbacteria:DVU_3055(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004540"(ribonuclease activity)|go:"GO:0006396"(RNA processing)|entrezgene/locuslink:2796081(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:07KwcaC+ALxj5tpd0LrHJTq/N/s882 rogid:0DukenNB/4I6W/6xr1RMTApK4ro882 intact-crc:576E6CBFFCD9D673|rigid:zAq7lh/xkp97rxai+aiVQzWK2oY false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D85 uniprotkb:Q726T1 intact:EBI-10064794|ensemblbacteria:AAS95524 intact:EBI-10069904|ensemblbacteria:AAS97496 psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:q726t1_desvh(display_long)|uniprotkb:poR(gene name)|psi-mi:poR(display_short)|uniprotkb:Pyruvate synthase(gene name synonym)|uniprotkb:DVU_3025(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069922|imex:IM-22740-272 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) interpro:IPR033412|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR011766(Thiamine pyrophosphate enzyme, C-terminal TPP-binding)|interpro:IPR011895("Pyruvate:ferredoxin (flavodoxin) oxidoreductase")|interpro:IPR017896|interpro:IPR017900|interpro:IPR019456|interpro:IPR019752|interpro:IPR029061|refseq:YP_012236.1|refseq:WP_010940284.1|ensemblbacteria:AAS97496(transcript)|ensemblbacteria:DVU_3025(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0019164"(pyruvate synthase activity)|go:"GO:0022900"(electron transport chain)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR037112|entrezgene/locuslink:2796442(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.55" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 rogid:HjxGbqzD+v4RlI5kNJh2g0o5mEI882 intact-crc:92A7D65A61508D15|rigid:yrIjYFSDEUcO4yBJeSHkbbS8ASo false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D66 uniprotkb:Q72D85 intact:EBI-10069867|ensemblbacteria:AAS95543 intact:EBI-10064794|ensemblbacteria:AAS95524 psi-mi:q72d66_desvh(display_long)|uniprotkb:DVU_1063(locus name) psi-mi:q72d85_desvh(display_long)|uniprotkb:DVU_1044(locus name)|uniprotkb:guaB(gene name)|psi-mi:guaB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069887|imex:IM-22740-270 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_010284.1|ensemblbacteria:AAS95543(transcript)|ensemblbacteria:DVU_1063(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794775(identity) interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR001093(IMP dehydrogenase/GMP reductase)|interpro:IPR005990(IMP dehydrogenase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR015875(IMP dehydrogenase / GMP reductase, conserved site)|refseq:YP_010265.1|refseq:WP_010938343.1|ensemblbacteria:AAS95524(transcript)|ensemblbacteria:DVU_1044(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003938"(IMP dehydrogenase activity)|go:"GO:0006177"(GMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795265(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:/FGZfdEl4hpR3T4zNSsEWKoAqlY882 rogid:qBH4v0/X/2/dUaVxyYhnVw06/uU882 intact-crc:E12601A74DEBEB14|rigid:CT5lAsRww9ZksNMQbVcD+kkLrgg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72D66 uniprotkb:Q72D97 intact:EBI-10069867|ensemblbacteria:AAS95543 intact:EBI-10069870|ensemblbacteria:AAS95512 psi-mi:q72d66_desvh(display_long)|uniprotkb:DVU_1063(locus name) psi-mi:q72d97_desvh(display_long)|uniprotkb:DVU_1032(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069887|imex:IM-22740-270 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_010284.1|ensemblbacteria:AAS95543(transcript)|ensemblbacteria:DVU_1063(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794775(identity) refseq:YP_010253.1|refseq:WP_010938331.1|ensemblbacteria:AAS95512(transcript)|ensemblbacteria:DVU_1032(gene)|entrezgene/locuslink:2796245(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:/FGZfdEl4hpR3T4zNSsEWKoAqlY882 rogid:OdZ827d2Tnphc7z6jrvvxUJX1kc882 intact-crc:E12601A74DEBEB14|rigid:CT5lAsRww9ZksNMQbVcD+kkLrgg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DA8 uniprotkb:Q72DA7 intact:EBI-10067870|ensemblbacteria:AAS95501 intact:EBI-10069951|ensemblbacteria:AAS95502 psi-mi:q72da8_desvh(display_long)|uniprotkb:DVU_1021(locus name) psi-mi:q72da7_desvh(display_long)|uniprotkb:DVU_1022(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10069980|imex:IM-22740-276 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000825(SUF system FeS cluster assembly, SufBD)|refseq:YP_010242.1|refseq:WP_010938320.1|ensemblbacteria:AAS95501(transcript)|ensemblbacteria:DVU_1021(gene)|go:"GO:0016226"(iron-sulfur cluster assembly)|interpro:IPR037284|entrezgene/locuslink:2793744(identity) interpro:IPR010230(SUF system FeS cluster assembly, SufC ATPase)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR027417|refseq:YP_010243.1|refseq:WP_010938321.1|ensemblbacteria:AAS95502(transcript)|ensemblbacteria:DVU_1022(gene)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793745(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:fpheqrH7wLrgIp+jXGiRXV9K8yY882 rogid:2kqQWG3W1GWn5hPXsPE127s4/pw882 intact-crc:5648B3B765F9AFAC|rigid:bJVLfwa5Kzl4v/qkNeIt4FEpQzU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F13 uniprotkb:Q72DB7 intact:EBI-10069996|ensemblbacteria:AAS94888 intact:EBI-10070000|ensemblbacteria:AAS95492 psi-mi:q72f13_desvh(display_long)|uniprotkb:Cobyrinic acid a,c-diamide synthetase(gene name synonym)|uniprotkb:cbiA(gene name synonym)|uniprotkb:DVU_0405(locus name)|uniprotkb:cobB-1(gene name)|psi-mi:cobB-1(display_short) psi-mi:q72db7_desvh(display_long)|uniprotkb:DVU_1012(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070016|imex:IM-22740-278 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR004484(Cobyrinic acid a,c-diamide synthase CbiA)|interpro:IPR011698(CobB/CobQ-like glutamine amidotransferase)|interpro:IPR027417|interpro:IPR029062|refseq:YP_009629.1|refseq:WP_010937712.1|ensemblbacteria:AAS94888(transcript)|ensemblbacteria:DVU_0405(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0009236"(cobalamin biosynthetic process)|go:"GO:0042242"(cobyrinic acid a,c-diamide synthase activity)|entrezgene/locuslink:2796155(identity) interpro:IPR002035(von Willebrand factor, type A)|interpro:IPR010221(VCBS)|interpro:IPR011049(Serralysin-like metalloprotease, C-terminal)|interpro:IPR018511|refseq:YP_010233.1|refseq:WP_010938311.1|ensemblbacteria:AAS95492(transcript)|ensemblbacteria:DVU_1012(gene)|go:"GO:0005509"(calcium ion binding)|interpro:IPR013783(Immunoglobulin-like fold)|interpro:IPR036465|interpro:IPR040853|interpro:IPR001343(Haemolysin-type calcium-binding region)|entrezgene/locuslink:2794650(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.94" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:bFjBPICxF7WxZiyxcioI5nqmbDw882 rogid:j6yzspWr15cOn9QM+H6gdlRLyPQ882 intact-crc:0772941027823DF0|rigid:VO1xQzOKsXgE+XD1PDzyw8lXXiQ false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726V2 uniprotkb:Q72DE6 intact:EBI-10070078|ensemblbacteria:AAS97475 intact:EBI-10069542|ensemblbacteria:AAS95463 psi-mi:q726v2_desvh(display_long)|uniprotkb:DVU_3004(locus name) psi-mi:q72de6_desvh(display_long)|uniprotkb:DVU_0983(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070095|imex:IM-22740-282 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR023885|interpro:IPR029044|refseq:YP_012215.1|ensemblbacteria:AAS97475(transcript)|ensemblbacteria:DVU_3004(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793717(identity) interpro:IPR003729(Protein of unknown function DUF151)|refseq:YP_010204.1|refseq:WP_010938282.1|ensemblbacteria:AAS95463(transcript)|ensemblbacteria:DVU_0983(gene)|go:"GO:0004518"(nuclease activity)|interpro:IPR036104|entrezgene/locuslink:2793325(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.47" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:KcIyHzFmrnxqtKOrnN9LJXpRids882 rogid:lyEmS5ln0s8rv5N6bjV4OQwaYSY882 intact-crc:6EF3CE8573D87FB6|rigid:CHO6VKnec49B9VVQ2mAclwFzgic false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DG2 uniprotkb:Q72DG1 intact:EBI-10070134|ensemblbacteria:AAS95447 intact:EBI-10070131|ensemblbacteria:AAS95448 psi-mi:q72dg2_desvh(display_long)|uniprotkb:DVU_0967(locus name) psi-mi:q72dg1_desvh(display_long)|uniprotkb:DVU_0968(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070147|imex:IM-22740-285 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000515(Binding-protein-dependent transport systems inner membrane component)|interpro:IPR010065(Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine)|refseq:YP_010188.1|refseq:WP_010938266.1|ensemblbacteria:AAS95447(transcript)|ensemblbacteria:DVU_0967(gene)|go:"GO:0006865"(amino acid transport)|go:"GO:0022857"(transmembrane transporter activity)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|interpro:IPR035906|interpro:IPR043429|entrezgene/locuslink:2794470(identity) interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:YP_010189.1|interpro:IPR030679|refseq:WP_010938267.1|ensemblbacteria:AAS95448(transcript)|ensemblbacteria:DVU_0968(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015424"(ABC-type amino acid transporter activity)|entrezgene/locuslink:2796144(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:5XYRLTPe8Hkjq27hCwephwlwVjE882 rogid:ZIYKPaJeJk9mk5whyr9yxp7DBQ4882 intact-crc:25F6ADAF33A807BF|rigid:sprtJHUkC2RXyl+ll5TMgXnwXkk false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DI3 uniprotkb:Q72DQ3 intact:EBI-10069337|ensemblbacteria:AAS95426 intact:EBI-10070180|ensemblbacteria:AAS95356 psi-mi:q72di3_desvh(display_long)|uniprotkb:DVU_0946(locus name) psi-mi:q72dq3_desvh(display_long)|uniprotkb:rnj(gene name)|psi-mi:rnj(display_short)|uniprotkb:DVU_0876(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070203|imex:IM-22740-288 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|refseq:YP_010167.1|refseq:WP_010938245.1|ensemblbacteria:AAS95426(transcript)|ensemblbacteria:DVU_0946(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794590(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR001587(Protein of unknown function UPF0036, conserved site)|interpro:IPR004613(Conserved hypothetical protein MG423)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|refseq:YP_010097.1|interpro:IPR030854|refseq:WP_010938175.1|ensemblbacteria:AAS95356(transcript)|ensemblbacteria:DVU_0876(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0004534"(5'-3' exoribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR036866|interpro:IPR042173|interpro:IPR041636|entrezgene/locuslink:2795130(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.41" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:FJt8RYD3poiEkHTx8ZkIJniRK4A882 rogid:3Iz/fHOOUSOj7o16dcKIxQEu7K0882 intact-crc:1134A3C6B19F9993|rigid:XiIDSOLsnfWE3MWoEw6JzPiD5bU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FQ1 uniprotkb:Q72DL8 intact:EBI-10065635|ensemblbacteria:AAS94646 intact:EBI-10070235|ensemblbacteria:AAS95391 psi-mi:q72fq1_desvh(display_long)|uniprotkb:carB(gene name)|psi-mi:carB(display_short)|uniprotkb:Carbamoyl-phosphate synthetase ammonia chain(gene name synonym)|uniprotkb:DVU_0162(locus name) psi-mi:trua_desvh(display_long)|uniprotkb:"tRNA pseudouridine(38-40) synthase"(gene name synonym)|uniprotkb:tRNA pseudouridylate synthase I(gene name synonym)|uniprotkb:tRNA-uridine isomerase I(gene name synonym)|uniprotkb:DVU_0911(locus name)|uniprotkb:truA(gene name)|psi-mi:truA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070252|imex:IM-22740-291 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033937|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005480(Carbamoyl phosphate synthetase, large subunit, oligomerisation)|interpro:IPR005483(Carbamoyl phosphate synthase, large subunit)|interpro:IPR006275(Carbamoyl phosphate synthase, large subunit, glutamine-dependent)|interpro:IPR011607(MGS-like)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_009387.1|refseq:WP_010937473.1|ensemblbacteria:AAS94646(transcript)|ensemblbacteria:DVU_0162(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR036897|interpro:IPR036914|entrezgene/locuslink:2796778(identity) interpro:IPR001406(tRNA pseudouridine synthase)|interpro:IPR020095|interpro:IPR020097|interpro:IPR020103|refseq:YP_010132.1|refseq:WP_010938210.1|ensemblbacteria:AAS95391(transcript)|ensemblbacteria:DVU_0911(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0031119"(tRNA pseudouridine synthesis)|go:"GO:0106029"(tRNA pseudouridine synthase activity)|interpro:IPR020094|entrezgene/locuslink:2794664(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:nBta5RjRlEWK0sedOl2PTSIhVZE882 rogid:xy7Ddm8yt+vMdCqiyy/DqUt/AtU882 intact-crc:E50506719B86A304|rigid:yqQ2/1p8qMGUr7/WXXEFymZErzY false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:Q72DT1 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-10068244|ensemblbacteria:AAS95328 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q72dt1_desvh(display_long)|uniprotkb:DVU_0848(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070377|imex:IM-22740-297 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) refseq:YP_010069.1|refseq:WP_010938148.1|ensemblbacteria:AAS95328(transcript)|ensemblbacteria:DVU_0848(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR023753|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2795199(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:8fJEeFdsNociGk3VqQ6Jvr/Q4gs882 intact-crc:196871ADDE8AF38B|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:Q72DS8 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-10070308|ensemblbacteria:AAS95331 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q72ds8_desvh(display_long)|uniprotkb:DVU_0851(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070377|imex:IM-22740-297 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) refseq:YP_010072.1|refseq:WP_010938151.1|ensemblbacteria:DVU_0851(gene)|ensemblbacteria:AAS95331(transcript)|entrezgene/locuslink:2794180(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:E+DnBDT+UKmTb3MFm/r+lc56m9Y882 intact-crc:196871ADDE8AF38B|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DT0 uniprotkb:Q72DS9 intact:EBI-10070311|ensemblbacteria:AAS95329 intact:EBI-10070314|ensemblbacteria:AAS95330 psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:q72ds9_desvh(display_long)|uniprotkb:DVU_0850(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070377|imex:IM-22740-297 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_010071.1|refseq:WP_010938150.1|ensemblbacteria:AAS95330(transcript)|ensemblbacteria:DVU_0850(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036197|entrezgene/locuslink:2795201(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.67" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 rogid:6mCiza3oir+Bgg4hU7lTDFS59AQ882 intact-crc:196871ADDE8AF38B|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS8 uniprotkb:Q72DT1 intact:EBI-10070308|ensemblbacteria:AAS95331 intact:EBI-10068244|ensemblbacteria:AAS95328 psi-mi:q72ds8_desvh(display_long)|uniprotkb:DVU_0851(locus name) psi-mi:q72dt1_desvh(display_long)|uniprotkb:DVU_0848(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070335|imex:IM-22740-295 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010072.1|refseq:WP_010938151.1|ensemblbacteria:DVU_0851(gene)|ensemblbacteria:AAS95331(transcript)|entrezgene/locuslink:2794180(identity) refseq:YP_010069.1|refseq:WP_010938148.1|ensemblbacteria:AAS95328(transcript)|ensemblbacteria:DVU_0848(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR023753|interpro:IPR036188|interpro:IPR039650|entrezgene/locuslink:2795199(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:E+DnBDT+UKmTb3MFm/r+lc56m9Y882 rogid:8fJEeFdsNociGk3VqQ6Jvr/Q4gs882 intact-crc:7EB2EE8C40C4F22B|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS8 uniprotkb:Q72DT0 intact:EBI-10070308|ensemblbacteria:AAS95331 intact:EBI-10070311|ensemblbacteria:AAS95329 psi-mi:q72ds8_desvh(display_long)|uniprotkb:DVU_0851(locus name) psi-mi:q72dt0_desvh(display_long)|uniprotkb:DVU_0849(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070335|imex:IM-22740-295 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010072.1|refseq:WP_010938151.1|ensemblbacteria:DVU_0851(gene)|ensemblbacteria:AAS95331(transcript)|entrezgene/locuslink:2794180(identity) interpro:IPR003813(Methyl-viologen-reducing hydrogenase, delta subunit)|interpro:IPR017896|interpro:IPR017900|interpro:IPR023753|refseq:YP_010070.1|refseq:WP_010938149.1|ensemblbacteria:AAS95329(transcript)|ensemblbacteria:DVU_0849(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036188|entrezgene/locuslink:2795200(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:E+DnBDT+UKmTb3MFm/r+lc56m9Y882 rogid:pwNajjFqp9G9L61QJkLDnnYUPu4882 intact-crc:7EB2EE8C40C4F22B|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DS8 uniprotkb:Q72DS9 intact:EBI-10070308|ensemblbacteria:AAS95331 intact:EBI-10070314|ensemblbacteria:AAS95330 psi-mi:q72ds8_desvh(display_long)|uniprotkb:DVU_0851(locus name) psi-mi:q72ds9_desvh(display_long)|uniprotkb:DVU_0850(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070335|imex:IM-22740-295 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_010072.1|refseq:WP_010938151.1|ensemblbacteria:DVU_0851(gene)|ensemblbacteria:AAS95331(transcript)|entrezgene/locuslink:2794180(identity) interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_010071.1|refseq:WP_010938150.1|ensemblbacteria:AAS95330(transcript)|ensemblbacteria:DVU_0850(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR036197|entrezgene/locuslink:2795201(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.83" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:E+DnBDT+UKmTb3MFm/r+lc56m9Y882 rogid:6mCiza3oir+Bgg4hU7lTDFS59AQ882 intact-crc:7EB2EE8C40C4F22B|rigid:FS8RHzOw4yaQ8Dxpk4cmNWaKBaU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DQ7 uniprotkb:Q72DT6 intact:EBI-10070401|ensemblbacteria:AAS95352 intact:EBI-10070398|ensemblbacteria:AAS95323 psi-mi:q72dq7_desvh(display_long)|uniprotkb:DVU_0872(locus name) psi-mi:q72dt6_desvh(display_long)|uniprotkb:DVU_0843(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070417|imex:IM-22740-299 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001173(Glycosyl transferase, family 2)|interpro:IPR029044|refseq:YP_010093.1|refseq:WP_010938171.1|ensemblbacteria:AAS95352(transcript)|ensemblbacteria:DVU_0872(gene)|go:"GO:0016740"(transferase activity)|entrezgene/locuslink:2795171(identity) interpro:IPR001986(3-phosphoshikimate 1-carboxyvinyltransferase, core)|interpro:IPR013792(RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)|ensemblbacteria:AAS95323(transcript)|ensemblbacteria:DVU_0843(gene)|go:"GO:0016765"("transferase activity, transferring alkyl or aryl (other than methyl) groups")|interpro:IPR036968|entrezgene/locuslink:2795194(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.97" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:68aDFdJ5nUACL9v+DTH/98l7d2o882 rogid:kNLG5wjMPtvQhcJNffB8UZe6sDY882 intact-crc:ED74B52C65E4E676|rigid:RJ/KxTVJ5bzSRWoZHqzwzuEOnDE false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q726Q1 uniprotkb:Q72DU1 intact:EBI-10069830|ensemblbacteria:AAS97526 intact:EBI-10069824|ensemblbacteria:AAS95318 psi-mi:q726q1_desvh(display_long)|uniprotkb:DVU_3055(locus name) psi-mi:q72du1_desvh(display_long)|uniprotkb:DVU_0838(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070447|imex:IM-22740-301 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003029(S1, RNA binding)|interpro:IPR004659(Ribonuclease E and G)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019307|interpro:IPR022967|refseq:WP_010940314.1|refseq:YP_012266.1|ensemblbacteria:AAS97526(transcript)|ensemblbacteria:DVU_3055(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004540"(ribonuclease activity)|go:"GO:0006396"(RNA processing)|entrezgene/locuslink:2796081(identity) interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR020627|refseq:YP_010059.1|refseq:WP_010938139.1|go:"GO:0003723"(RNA binding)|ensemblbacteria:AAS95318(transcript)|ensemblbacteria:DVU_0838(gene)|interpro:IPR015946(K homology-like, alpha/beta)|entrezgene/locuslink:2794850(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:0DukenNB/4I6W/6xr1RMTApK4ro882 rogid:zZAxDHv5dDKNL7qgkl41HiIwAH0882 intact-crc:0D7DB49DCECEBC3D|rigid:XcGk3ewL7h1PDdPcYhCRXLxQQDA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FB7 uniprotkb:Q72DU3 intact:EBI-10070463|ensemblbacteria:AAS94780 intact:EBI-10069213|ensemblbacteria:AAS95316 psi-mi:q72fb7_desvh(display_long)|uniprotkb:DVU_0297(locus name) psi-mi:trmd_desvh(display_long)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym)|uniprotkb:DVU_0836(locus name)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070480|imex:IM-22740-303 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009521.1|interpro:IPR032587|ensemblbacteria:AAS94780(transcript)|ensemblbacteria:DVU_0297(gene)|entrezgene/locuslink:2795181(identity) interpro:IPR023148|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR019230|interpro:IPR029026|interpro:IPR029028|refseq:YP_010057.1|refseq:WP_010938137.1|ensemblbacteria:AAS95316(transcript)|ensemblbacteria:DVU_0836(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|entrezgene/locuslink:2794848(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:z4RK5lQYLK87xG2hQL8d5FK/zPY882 rogid:JzxZzMGyF2NhZkiUkc1jEB/A1Ck882 intact-crc:DB4605F8F3BA06F4|rigid:GYFIpfowcUJFeAR7YU8XnysNEtA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DX0 uniprotkb:Q72DX1 intact:EBI-10068337|ensemblbacteria:AAS95289 intact:EBI-10068330|ensemblbacteria:AAS95288 psi-mi:gatc_desvh(display_long)|uniprotkb:DVU_0809(locus name)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short) psi-mi:gata_desvh(display_long)|uniprotkb:DVU_0808(locus name)|uniprotkb:gatA(gene name)|psi-mi:gatA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070527|imex:IM-22740-306 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|refseq:YP_010030.1|refseq:WP_010938110.1|ensemblbacteria:AAS95289(transcript)|ensemblbacteria:DVU_0809(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|entrezgene/locuslink:2796532(identity) interpro:IPR000120(Amidase signature enzyme)|interpro:IPR004412("Glutamyl-tRNA(Gln) amidotransferase A subunit")|interpro:IPR020556|interpro:IPR023631|refseq:YP_010029.1|refseq:WP_010938109.1|ensemblbacteria:AAS95288(transcript)|ensemblbacteria:DVU_0808(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0016787"(hydrolase activity)|go:"GO:0030956"("glutamyl-tRNA(Gln) amidotransferase complex")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036928|entrezgene/locuslink:2796531(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:qL44j0V4vWpB/M5XplDodXtsSAo882 rogid:LKXhKeaN0xh/Z/2i4tHsyvkX5kk882 intact-crc:148A9A288D4844BB|rigid:zI5RYGk9l1KY6FlippGYFX+xW34 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72DX0 uniprotkb:Q72AV5 intact:EBI-10068337|ensemblbacteria:AAS95289 intact:EBI-10068341|ensemblbacteria:AAS96361 psi-mi:gatc_desvh(display_long)|uniprotkb:DVU_0809(locus name)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short) psi-mi:gatb_desvh(display_long)|uniprotkb:DVU_1885(locus name)|uniprotkb:gatB(gene name)|psi-mi:gatB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070527|imex:IM-22740-306 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|refseq:YP_010030.1|refseq:WP_010938110.1|ensemblbacteria:AAS95289(transcript)|ensemblbacteria:DVU_0809(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|entrezgene/locuslink:2796532(identity) interpro:IPR042114|interpro:IPR023168|interpro:IPR003789(GatB/Yqey)|interpro:IPR004413("Glutamyl-tRNA(Gln) amidotransferase B subunit")|interpro:IPR006075(GatB N-terminal region)|interpro:IPR017958|interpro:IPR017959|interpro:IPR018027|refseq:YP_011102.1|refseq:WP_010939171.1|ensemblbacteria:AAS96361(transcript)|ensemblbacteria:DVU_1885(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|entrezgene/locuslink:2793554(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:qL44j0V4vWpB/M5XplDodXtsSAo882 rogid:5dDsK9dmzftNNeagZxDm1pWlmBU882 intact-crc:148A9A288D4844BB|rigid:zI5RYGk9l1KY6FlippGYFX+xW34 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72E04 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10070597|ensemblbacteria:AAS95255 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:atpb_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit beta(gene name synonym)|uniprotkb:F-ATPase subunit beta(gene name synonym)|uniprotkb:DVU_0775(locus name)|uniprotkb:atpD(gene name)|psi-mi:atpD(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070678|imex:IM-22740-312 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005722(ATPase, F1 complex, beta subunit)|interpro:IPR020003|interpro:IPR024034|interpro:IPR027417|refseq:YP_009996.1|refseq:WP_010938076.1|ensemblbacteria:AAS95255(transcript)|ensemblbacteria:DVU_0775(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR036121|entrezgene/locuslink:2794846(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.77" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:Xiy5meHj6wIsRlN/ux9pHsgNWz0882 intact-crc:2B332F516F7B48A1|rigid:n46Z2qxO8aJ4tYDUpE2QhRwqKQ4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q726V0 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10070649|ensemblbacteria:AAS97477 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:q726v0_desvh(display_long)|uniprotkb:DVU_3006(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070678|imex:IM-22740-312 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR003329(Acylneuraminate cytidylyltransferase)|interpro:IPR025714|interpro:IPR029044|interpro:IPR029063|refseq:YP_012217.1|refseq:WP_010940265.1|ensemblbacteria:AAS97477(transcript)|ensemblbacteria:DVU_3006(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|entrezgene/locuslink:2793719(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.82" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:mYM7lchB09rIDxmq89XTGcpMboo882 intact-crc:2B332F516F7B48A1|rigid:n46Z2qxO8aJ4tYDUpE2QhRwqKQ4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E05 uniprotkb:Q72E02 intact:EBI-10066750|ensemblbacteria:AAS95254 intact:EBI-10070589|ensemblbacteria:AAS95257 psi-mi:atpe_desvh(display_long)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:DVU_0774(locus name)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short) psi-mi:atpa_desvh(display_long)|uniprotkb:ATP synthase F1 sector subunit alpha(gene name synonym)|uniprotkb:F-ATPase subunit alpha(gene name synonym)|uniprotkb:DVU_0777(locus name)|uniprotkb:atpA(gene name)|psi-mi:atpA(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070678|imex:IM-22740-312 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR020547|refseq:YP_009995.1|refseq:WP_010938075.1|ensemblbacteria:AAS95254(transcript)|ensemblbacteria:DVU_0774(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR036771|interpro:IPR036794|entrezgene/locuslink:2794845(identity) interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR000793(ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)|interpro:IPR004100(ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal)|interpro:IPR005294(ATPase, F1 complex, alpha subunit)|interpro:IPR020003|interpro:IPR023366|interpro:IPR027417|refseq:YP_009998.1|interpro:IPR033732|refseq:WP_010938078.1|ensemblbacteria:AAS95257(transcript)|ensemblbacteria:DVU_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR038376|interpro:IPR036121|entrezgene/locuslink:2794762(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.81" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Stp95b5d04vUb7U5ZDB3qvSB3BA882 rogid:TyeW5Sj6sdSrxSWLKgxlOkigD1U882 intact-crc:2B332F516F7B48A1|rigid:n46Z2qxO8aJ4tYDUpE2QhRwqKQ4 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E08 uniprotkb:Q72DQ3 intact:EBI-10070702|ensemblbacteria:AAS95251 intact:EBI-10070180|ensemblbacteria:AAS95356 psi-mi:q72e08_desvh(display_long)|uniprotkb:DVU_0771(locus name) psi-mi:q72dq3_desvh(display_long)|uniprotkb:rnj(gene name)|psi-mi:rnj(display_short)|uniprotkb:DVU_0876(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070715|imex:IM-22740-314 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002104(Integrase, catalytic core, phage)|interpro:IPR004606(Molybdenum-pterin binding)|interpro:IPR005116(Transport-associated OB, type 1)|interpro:IPR008995(Molybdate/tungstate binding)|interpro:IPR011010(DNA breaking-rejoining enzyme, catalytic core)|interpro:IPR013762(Integrase-like, catalytic core, phage)|refseq:YP_009992.1|refseq:WP_010938072.1|ensemblbacteria:AAS95251(transcript)|ensemblbacteria:DVU_0771(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006310"(DNA recombination)|go:"GO:0015074"(DNA integration)|go:"GO:0015689"(molybdate ion transport)|entrezgene/locuslink:2794842(identity) interpro:IPR001279(Beta-lactamase-like)|interpro:IPR001587(Protein of unknown function UPF0036, conserved site)|interpro:IPR004613(Conserved hypothetical protein MG423)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|refseq:YP_010097.1|interpro:IPR030854|refseq:WP_010938175.1|ensemblbacteria:AAS95356(transcript)|ensemblbacteria:DVU_0876(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0004534"(5'-3' exoribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR036866|interpro:IPR042173|interpro:IPR041636|entrezgene/locuslink:2795130(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.96" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:OplZUjqBbD10nipkAcy/MaSOls0882 rogid:3Iz/fHOOUSOj7o16dcKIxQEu7K0882 intact-crc:52448E4C8E4E1C5D|rigid:NbJ6WjOiNjislqBFRlyLaVXap+c false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E84 uniprotkb:Q72E85 intact:EBI-6974672|ensemblbacteria:AAS95175|intact:MINT-8183932 intact:EBI-10070807|ensemblbacteria:AAS95174 psi-mi:qrcb_desvh(display_long)|uniprotkb:qrcB(gene name)|psi-mi:qrcB(display_short)|uniprotkb:Quinone reductase complex subunit B(gene name synonym)|uniprotkb:"Type I cytochrome c3:menaquinone oxidoreductase subunit B"(gene name synonym)|uniprotkb:DVU_0694(locus name) psi-mi:qrcc_desvh(display_long)|uniprotkb:qrcC(gene name)|psi-mi:qrcC(display_short)|uniprotkb:Quinone reductase complex subunit C(gene name synonym)|uniprotkb:"Type I cytochrome c3:menaquinone oxidoreductase subunit C"(gene name synonym)|uniprotkb:DVU_0693(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070823|imex:IM-22740-320 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAS95175(transcript)|ensemblbacteria:DVU_0694(gene)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR006311(Twin-arginine translocation pathway signal)|refseq:YP_009916.1|interpro:IPR006657(Molydopterin dinucleotide-binding region)|refseq:WP_010937997.1|entrezgene/locuslink:2793634(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_009915.1|refseq:WP_010937996.1|ensemblbacteria:AAS95174(transcript)|ensemblbacteria:DVU_0693(gene)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0046872"(metal ion binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2793633(identity) psi-mi:"MI:0469"(intact) comment:mint|comment:"Author predicted score: 0.77" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:PYdLc8tPlD4j/Xl5YyQYtlEO9Gc882 rogid:wbzNtmyZ61tQhI3yPTmIOd2kEEA882 intact-crc:003085DDE2679E8B|rigid:KIfReFKcgfD1V7uaOSRU+IxVu50 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72E91 uniprotkb:Q72E92 intact:EBI-10070836|ensemblbacteria:AAS95168 intact:EBI-10070842|ensemblbacteria:AAS95167 psi-mi:q72e91_desvh(display_long)|uniprotkb:DVU_0687(locus name) psi-mi:q72e92_desvh(display_long)|uniprotkb:DVU_0686(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070855|imex:IM-22740-322 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001203(Aldehyde ferredoxin oxidoreductase, C-terminal)|interpro:IPR013983(Aldehyde ferredoxin oxidoreductase, N-terminal)|interpro:IPR013984(Aldehyde ferredoxin oxidoreductase, domain 2)|refseq:YP_009909.1|ensemblbacteria:AAS95168(transcript)|ensemblbacteria:DVU_0687(gene)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016625"(oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR013985(Aldehyde ferredoxin oxidoreductase, domain 3)|interpro:IPR036021|interpro:IPR036503|entrezgene/locuslink:2795337(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_009908.1|ensemblbacteria:AAS95167(transcript)|ensemblbacteria:DVU_0686(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795336(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:HUoNa1HVMVM46FD3epBBIjN0uQ4882 rogid:3wuISaLHHNS6iZPCoxa5AXUuCO0882 intact-crc:B7042C0A8D99B6C4|rigid:eh0WZ57XIn7dGyhakZW0V/RWgms false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EF2 uniprotkb:Q72EF1 intact:EBI-10070962|ensemblbacteria:AAS95107 intact:EBI-10070958|ensemblbacteria:AAS95108 psi-mi:q72ef2_desvh(display_long)|uniprotkb:DVU_0626(locus name)|uniprotkb:ilvN-1(gene name)|psi-mi:ilvN-1(display_short) psi-mi:q72ef1_desvh(display_long)|uniprotkb:DVU_0627(locus name)|uniprotkb:ptB(gene name)|psi-mi:ptB(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070979|imex:IM-22740-328 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR027271|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR004789(Acetolactate synthase, small subunit)|interpro:IPR019455|refseq:YP_009848.1|refseq:WP_010937929.1|ensemblbacteria:AAS95107(transcript)|ensemblbacteria:DVU_0626(gene)|go:"GO:0003984"(acetolactate synthase activity)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:1990610"(acetolactate synthase regulator activity)|interpro:IPR039557|entrezgene/locuslink:2796150(identity) interpro:IPR002505(Phosphate acetyl/butaryl transferase)|interpro:IPR012147(Phosphate acetyl/butyryltransferase)|refseq:YP_009849.1|refseq:WP_010937930.1|ensemblbacteria:AAS95108(transcript)|ensemblbacteria:DVU_0627(gene)|go:"GO:0050182"(phosphate butyryltransferase activity)|entrezgene/locuslink:2796151(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:hTBmiwTFmRnSE8eK3TG3YKPbq3I882 rogid:oRRqj3WQRWyE/OrD35tQi/Cs9eQ882 intact-crc:8BF35C5369FC8F02|rigid:e5aDqz/2PXqW4qnhx6tS8HMpURw false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EC2 uniprotkb:Q725R1 intact:EBI-10070909|ensemblbacteria:AAS95137 intact:EBI-10070901|ensemblbacteria:AAS97832 psi-mi:q72ec2_desvh(display_long)|uniprotkb:DVU_0656(locus name) psi-mi:q725r1_desvh(display_long)|uniprotkb:DVU_3363(locus name)|uniprotkb:sun(gene name)|psi-mi:sun(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070937|imex:IM-22740-326 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937959.1|interpro:IPR005651(Protein of unknown function DUF343)|refseq:YP_009878.1|ensemblbacteria:AAS95137(transcript)|ensemblbacteria:DVU_0656(gene)|entrezgene/locuslink:2794242(identity) interpro:IPR001678("Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p")|interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR023267|interpro:IPR029063|refseq:YP_012572.1|refseq:WP_010940618.1|ensemblbacteria:AAS97832(transcript)|ensemblbacteria:DVU_3363(gene)|go:"GO:0001510"(RNA methylation)|go:"GO:0003723"(RNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0008168"(methyltransferase activity)|interpro:IPR035926|entrezgene/locuslink:2795677(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:lA5l7h5Yqbb6tkDyKH1a31iRfzY882 rogid:WgJFg0eS2j0sETKJQiaNtDtn6nc882 intact-crc:6DCEACA03CEC92B3|rigid:vySVxJvofVE8ocXFNEH8uU9dt5I false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EC2 uniprotkb:Q725J9 intact:EBI-10070909|ensemblbacteria:AAS95137 intact:EBI-10070905|ensemblbacteria:AAS97644 psi-mi:q72ec2_desvh(display_long)|uniprotkb:DVU_0656(locus name) psi-mi:q725j9_desvh(display_long)|uniprotkb:2-methoxy-6-polyprenyl-1,4-benzoquinol methylase(gene name synonym)|uniprotkb:Demethylmenaquinone methyltransferase(gene name synonym)|uniprotkb:DVU_3174(locus name)|uniprotkb:ubiE(gene name)|psi-mi:ubiE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070937|imex:IM-22740-326 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937959.1|interpro:IPR005651(Protein of unknown function DUF343)|refseq:YP_009878.1|ensemblbacteria:AAS95137(transcript)|ensemblbacteria:DVU_0656(gene)|entrezgene/locuslink:2794242(identity) interpro:IPR004033(UbiE/COQ5 methyltransferase)|interpro:IPR023576|interpro:IPR029063|refseq:YP_012384.1|refseq:WP_010940432.1|go:"GO:0043333"(2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity)|go:"GO:0043770"(demethylmenaquinone methyltransferase activity)|go:"GO:0102027"("S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity")|go:"GO:0102094"("S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity")|go:"GO:0102955"("S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity")|ensemblbacteria:AAS97644(transcript)|ensemblbacteria:DVU_3174(gene)|go:"GO:0006744"(ubiquinone biosynthetic process)|go:"GO:0009060"(aerobic respiration)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0032259"(methylation)|entrezgene/locuslink:2793824(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:lA5l7h5Yqbb6tkDyKH1a31iRfzY882 rogid:Ja8FmiSTJUD75AEgqsA33VuaICY882 intact-crc:6DCEACA03CEC92B3|rigid:vySVxJvofVE8ocXFNEH8uU9dt5I false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EC2 uniprotkb:Q727D9 intact:EBI-10070909|ensemblbacteria:AAS95137 intact:EBI-10070915|ensemblbacteria:AAS97388 psi-mi:q72ec2_desvh(display_long)|uniprotkb:DVU_0656(locus name) psi-mi:prmc_desvh(display_long)|uniprotkb:N5-glutamine methyltransferase PrmC(gene name synonym)|uniprotkb:"Protein-(glutamine-N5) MTase PrmC"(gene name synonym)|uniprotkb:Protein-glutamine N-methyltransferase PrmC(gene name synonym)|uniprotkb:hemK(gene name synonym)|uniprotkb:DVU_2916(locus name)|uniprotkb:prmC(gene name)|psi-mi:prmC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10070937|imex:IM-22740-326 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937959.1|interpro:IPR005651(Protein of unknown function DUF343)|refseq:YP_009878.1|ensemblbacteria:AAS95137(transcript)|ensemblbacteria:DVU_0656(gene)|entrezgene/locuslink:2794242(identity) interpro:IPR025714|interpro:IPR004556(Modification methylase HemK)|interpro:IPR019874|interpro:IPR029063|refseq:YP_012128.1|refseq:WP_010940176.1|ensemblbacteria:AAS97388(transcript)|ensemblbacteria:DVU_2916(gene)|go:"GO:0018364"(peptidyl-glutamine methylation)|go:"GO:0036009"(protein-glutamine N-methyltransferase activity)|go:"GO:0102559"("protein-(glutamine-N5) methyltransferase activity")|interpro:IPR040758|entrezgene/locuslink:2794057(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:lA5l7h5Yqbb6tkDyKH1a31iRfzY882 rogid:EGtWVtBqEAeqY1+hl+FVL7PGDjc882 intact-crc:6DCEACA03CEC92B3|rigid:vySVxJvofVE8ocXFNEH8uU9dt5I false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72BU5 uniprotkb:Q72EI3 intact:EBI-10066693|ensemblbacteria:AAS96017 intact:EBI-10071030|ensemblbacteria:AAS95076 psi-mi:q72bu5_desvh(display_long)|uniprotkb:DVU_1539(locus name)|uniprotkb:glpX(gene name)|psi-mi:glpX(display_short) psi-mi:q72ei3_desvh(display_long)|uniprotkb:DVU_0595(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071050|imex:IM-22740-332 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004464(GlpX)|refseq:YP_010758.1|refseq:WP_010938831.1|ensemblbacteria:AAS96017(transcript)|ensemblbacteria:DVU_1539(gene)|go:"GO:0006071"(glycerol metabolic process)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0042132"(fructose 1,6-bisphosphate 1-phosphatase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2793689(identity) interpro:IPR003787(Sulphur relay, DsrE-like protein)|interpro:IPR027396|refseq:YP_009817.1|refseq:WP_010937898.1|ensemblbacteria:AAS95076(transcript)|ensemblbacteria:DVU_0595(gene)|entrezgene/locuslink:2794093(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:CT97gy9emJCEZP/QFHye+xB6Ccs882 rogid:kvzohqJkQwjbqKzVl0H3I0VWpVU882 intact-crc:3F971AE681FEF5BF|rigid:3Lwix6yq/zNH6XEKN/kZ75YI/qk false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EN7 uniprotkb:Q72EJ1 intact:EBI-10071083|ensemblbacteria:AAS95022 intact:EBI-10071089 psi-mi:q72en7_desvh(display_long)|uniprotkb:DVU_0540(locus name) psi-mi:q72ej1_desvh(display_long)|uniprotkb:DVU_0587(locus name)|uniprotkb:fdnG-1(gene name)|psi-mi:fdnG-1(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071104|imex:IM-22740-335 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR009056(Cytochrome c, monohaem)|interpro:IPR021796|refseq:YP_009763.1|refseq:WP_010937846.1|ensemblbacteria:AAS95022(transcript)|ensemblbacteria:DVU_0540(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0009055"(electron transfer activity)|go:"GO:0016021"(integral component of membrane)|go:"GO:0020037"(heme binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR036097|interpro:IPR036890|entrezgene/locuslink:2795577(identity) refseq:WP_010937890.1|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR006443(Formate dehydrogenase, alpha subunit, anaerobic)|interpro:IPR006655(Molybdopterin oxidoreductase, prokaryotic, conserved site)|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR019546|interpro:IPR027467|refseq:YP_009809.1|go:"GO:0009055"(electron transfer activity)|go:"GO:0042597"(periplasmic space)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0045333"(cellular respiration)|go:"GO:0046872"(metal ion binding)|go:"GO:0047111"("formate dehydrogenase (cytochrome-c-553) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0008863"("formate dehydrogenase (NAD+) activity")|rcsb pdb:6SDR|rcsb pdb:6SDV|entrezgene/locuslink:2794164(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:q3M9u+/B53O7a3lBlPKb6sver40882 rogid:md8B41DmU2Tvm8hzCcUpawmBIqQ882 intact-crc:012CB685C6734840|rigid:bb0gnTsdx5JEzRJ/t14PKjUWEJU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EJ8 uniprotkb:Q72EV0 intact:EBI-10071136|ensemblbacteria:AAS95061 intact:EBI-10071140|ensemblbacteria:AAS94951 psi-mi:q72ej8_desvh(display_long)|uniprotkb:Molybdenum cofactor biosynthesis protein A(gene name synonym)|uniprotkb:DVU_0580(locus name)|uniprotkb:moaA(gene name)|psi-mi:moaA(display_short) psi-mi:q72ev0_desvh(display_long)|uniprotkb:DVU_0468(locus name)|uniprotkb:trpC(gene name)|psi-mi:trpC(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071154|imex:IM-22740-338 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000385(MoaA/nifB/pqqE, iron-sulphur binding, conserved site)|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR010505(Molybdenum cofactor synthesis C-terminal)|interpro:IPR013483(Molybdenum cofactor biosynthesis protein A)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009802.1|refseq:WP_010937883.1|ensemblbacteria:AAS95061(transcript)|ensemblbacteria:DVU_0580(gene)|go:"GO:0005525"(GTP binding)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0019008"(molybdopterin synthase complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0061798"(GTP 3',8'-cyclase activity)|go:"GO:1904047"(S-adenosyl-L-methionine binding)|entrezgene/locuslink:2794565(identity) refseq:WP_010937775.1|interpro:IPR001468(Indole-3-glycerol phosphate synthase, central region)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|refseq:YP_009692.1|ensemblbacteria:AAS94951(transcript)|ensemblbacteria:DVU_0468(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|entrezgene/locuslink:2793609(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.99" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:qbppJFBowebIRqm7b4wj/FOyB6k882 rogid:5pzSTXRUajEFmQznXEvuOW7nihs882 intact-crc:2F9C04E3ED354783|rigid:X7HzzNktyL3r9i+a+A7qPDBXD1g false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72ER3 uniprotkb:Q72EM3 intact:EBI-10071189|ensemblbacteria:AAS94988 intact:EBI-10071183|ensemblbacteria:AAS95036 psi-mi:q72er3_desvh(display_long)|uniprotkb:DVU_0506(locus name) psi-mi:q72em3_desvh(display_long)|uniprotkb:DVU_0554(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071202|imex:IM-22740-341 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038763|interpro:IPR001667(Phosphoesterase, RecJ-like)|interpro:IPR003156(Phosphoesterase, DHHA1)|refseq:YP_009729.1|refseq:WP_010937812.1|ensemblbacteria:AAS94988(transcript)|ensemblbacteria:DVU_0506(gene)|go:"GO:0003676"(nucleic acid binding)|entrezgene/locuslink:2793566(identity) refseq:WP_010937860.1|interpro:IPR001509(NAD-dependent epimerase/dehydratase)|refseq:YP_009777.1|ensemblbacteria:AAS95036(transcript)|ensemblbacteria:DVU_0554(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR036291|entrezgene/locuslink:2794437(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.98" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:SfMfJxYxgdzCTVZxnMfId1UHCfA882 rogid:hgbzjy6uoT6oQgV5XOmNxD3ne6I882 intact-crc:5672C7E56B332174|rigid:If1XNVMXf1w4ZlP2uphUDNiirak false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EP4 uniprotkb:Q72ES6 intact:EBI-10071215|ensemblbacteria:AAS95007 intact:EBI-10071066|ensemblbacteria:AAS94975 psi-mi:q72ep4_desvh(display_long)|uniprotkb:DVU_0525(locus name) psi-mi:q72es6_desvh(display_long)|uniprotkb:DVU_0493(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071231|imex:IM-22740-343 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000835(Bacterial regulatory protein, MarR)|interpro:IPR023187|refseq:YP_009748.1|refseq:WP_010937831.1|ensemblbacteria:AAS95007(transcript)|ensemblbacteria:DVU_0525(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|interpro:IPR036388|interpro:IPR036390|entrezgene/locuslink:2794891(identity) interpro:IPR014995(Protein of unknown function DUF1844)|refseq:YP_009716.1|refseq:WP_010937799.1|ensemblbacteria:AAS94975(transcript)|ensemblbacteria:DVU_0493(gene)|entrezgene/locuslink:2793707(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.93" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:8SRchu38uyxQn6nzyVy9t8rWJpU882 rogid:Zqao7bHispTY59fnE3VX1lv/EOA882 intact-crc:AB7E7AA66791D828|rigid:8J3ba18l9JIHmuJelN5JbvbuyxU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729L4 uniprotkb:Q72ER3 intact:EBI-10071300|ensemblbacteria:AAS96809 intact:EBI-10071189|ensemblbacteria:AAS94988 psi-mi:q729l4_desvh(display_long)|uniprotkb:DVU_2336(locus name) psi-mi:q72er3_desvh(display_long)|uniprotkb:DVU_0506(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071316|imex:IM-22740-347 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR004447(Peptidase S41A, C-terminal protease)|interpro:IPR005151(Peptidase S41)|interpro:IPR029045|refseq:YP_011549.1|refseq:WP_010939609.1|ensemblbacteria:AAS96809(transcript)|ensemblbacteria:DVU_2336(gene)|go:"GO:0008236"(serine-type peptidase activity)|interpro:IPR036034|interpro:IPR041489|entrezgene/locuslink:2793809(identity) interpro:IPR038763|interpro:IPR001667(Phosphoesterase, RecJ-like)|interpro:IPR003156(Phosphoesterase, DHHA1)|refseq:YP_009729.1|refseq:WP_010937812.1|ensemblbacteria:AAS94988(transcript)|ensemblbacteria:DVU_0506(gene)|go:"GO:0003676"(nucleic acid binding)|entrezgene/locuslink:2793566(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:dCMZZoraoIpoy5InI5+zXhqkZEI882 rogid:SfMfJxYxgdzCTVZxnMfId1UHCfA882 intact-crc:77BA2F26F07B7A64|rigid:KhkTlzOhFgzAsrbumPR0f7eMQiU false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q729A3 uniprotkb:Q72ES6 intact:EBI-10071362|ensemblbacteria:AAS96921 intact:EBI-10071066|ensemblbacteria:AAS94975 psi-mi:metk_desvh(display_long)|uniprotkb:MAT(gene name synonym)|uniprotkb:Methionine adenosyltransferase(gene name synonym)|uniprotkb:DVU_2449(locus name)|uniprotkb:metK(gene name)|psi-mi:metK(display_short) psi-mi:q72es6_desvh(display_long)|uniprotkb:DVU_0493(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071379|imex:IM-22740-351 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002133(S-adenosylmethionine synthetase)|interpro:IPR022628|interpro:IPR022629|interpro:IPR022630|interpro:IPR022631|interpro:IPR022636|refseq:YP_011661.1|refseq:WP_010939720.1|ensemblbacteria:AAS96921(transcript)|ensemblbacteria:DVU_2449(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004478"(methionine adenosyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006556"(S-adenosylmethionine biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|entrezgene/locuslink:2796626(identity) interpro:IPR014995(Protein of unknown function DUF1844)|refseq:YP_009716.1|refseq:WP_010937799.1|ensemblbacteria:AAS94975(transcript)|ensemblbacteria:DVU_0493(gene)|entrezgene/locuslink:2793707(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.32" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:UBqFyeh7iE7MyB+DP/nQDl+woeI882 rogid:Zqao7bHispTY59fnE3VX1lv/EOA882 intact-crc:125590F52886CD2E|rigid:tm30HRzBp9KWGz6eR74iuNrOvlA false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EV8 uniprotkb:Q72ER8 intact:EBI-10071329|ensemblbacteria:AAS94943 intact:EBI-10071336|ensemblbacteria:AAS94983 psi-mi:q72ev8_desvh(display_long)|uniprotkb:DVU_0460(locus name)|uniprotkb:aroA'(gene name)|psi-mi:aroA'(display_short) psi-mi:q72er8_desvh(display_long)|uniprotkb:DVU_0501(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071349|imex:IM-22740-349 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR041720|interpro:IPR002915(Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR010210(Predicted phospho-2-dehydro-3-deoxyheptonate aldolase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:YP_009684.1|refseq:WP_010937767.1|ensemblbacteria:AAS94943(transcript)|ensemblbacteria:DVU_0460(gene)|go:"GO:0004332"(fructose-bisphosphate aldolase activity)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016744"(transketolase or transaldolase activity)|go:"GO:0016836"(hydro-lyase activity)|entrezgene/locuslink:2794473(identity) refseq:YP_009724.1|refseq:WP_010937807.1|ensemblbacteria:AAS94983(transcript)|ensemblbacteria:DVU_0501(gene)|entrezgene/locuslink:2796761(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:jMWmDYStvbIlwq4hmTwf4dNv1ps882 rogid:hSnPOx4SPjZWTNYAR+XQ6gewsC4882 intact-crc:F1E8A7E1CACB89E5|rigid:hSLI/p7EsSL3zGi3SoCEf14Tk28 false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EU7 uniprotkb:Q72EU8 intact:EBI-10071399|ensemblbacteria:AAS94954 intact:EBI-10071392|ensemblbacteria:AAS94953 psi-mi:trpa_desvh(display_long)|uniprotkb:DVU_0471(locus name)|uniprotkb:trpA(gene name)|psi-mi:trpA(display_short) psi-mi:q72eu8_desvh(display_long)|uniprotkb:trpB(gene name synonym)|uniprotkb:DVU_0470(locus name)|uniprotkb:trpB-2(gene name)|psi-mi:trpB-2(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071413|imex:IM-22740-353 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002028(Tryptophan synthase, alpha chain)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR018204|refseq:YP_009695.1|refseq:WP_010937778.1|ensemblbacteria:AAS94954(transcript)|ensemblbacteria:DVU_0471(gene)|go:"GO:0004834"(tryptophan synthase activity)|entrezgene/locuslink:2794713(identity) interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|refseq:YP_009694.1|refseq:WP_010937777.1|ensemblbacteria:AAS94953(transcript)|ensemblbacteria:DVU_0470(gene)|go:"GO:0004834"(tryptophan synthase activity)|interpro:IPR036052|entrezgene/locuslink:2793611(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:/nGrZtsjZuKHECdaoQPXZu7Wc0E882 rogid:g/enmCvxQAXl3YhQAd4uEJWnxY0882 intact-crc:B8F8B9CC5C1355B0|rigid:9zp1izyerPdVL4t/vNfjUd68xdg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q727A8 uniprotkb:Q72EX0 intact:EBI-10065746|ensemblbacteria:AAS97419 intact:EBI-10066202|ensemblbacteria:AAS94931 psi-mi:q727a8_desvh(display_long)|uniprotkb:DVU_2947(locus name) psi-mi:q72ex0_desvh(display_long)|uniprotkb:GDP-D-mannose dehydratase(gene name synonym)|uniprotkb:DVU_0448(locus name)|uniprotkb:gmd(gene name)|psi-mi:gmd(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071480|imex:IM-22740-357 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005144(ATP-cone)|interpro:IPR012833(Ribonucleoside-triphosphate reductase, anaerobic)|refseq:YP_012159.1|refseq:WP_010940207.1|ensemblbacteria:AAS97419(transcript)|ensemblbacteria:DVU_2947(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0008998"(ribonucleoside-triphosphate reductase activity)|entrezgene/locuslink:2796498(identity) interpro:IPR006368(GDP-mannose 4,6-dehydratase)|interpro:IPR016040("NAD(P)-binding")|refseq:WP_010937755.1|refseq:YP_009672.1|ensemblbacteria:AAS94931(transcript)|ensemblbacteria:DVU_0448(gene)|go:"GO:0008446"(GDP-mannose 4,6-dehydratase activity)|go:"GO:0019673"(GDP-mannose metabolic process)|go:"GO:0070401"(NADP+ binding)|interpro:IPR036291|entrezgene/locuslink:2796651(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.46" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:DnraAXgtiBdayllUy+NebhuIMUc882 rogid:16r92wZ0mtFpXMYLNV/s57Z8qvY882 intact-crc:A04A54F4B6B05FF2|rigid:nUtH/3HX/ZwQaKyuqnzD9nczJ8s false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72EX7 uniprotkb:Q72EZ0 intact:EBI-10071496|ensemblbacteria:AAS94924 intact:EBI-10070754|ensemblbacteria:AAS94911 psi-mi:adec_desvh(display_long)|uniprotkb:DVU_0441(locus name)|uniprotkb:ade(gene name)|psi-mi:ade(display_short) psi-mi:q72ez0_desvh(display_long)|uniprotkb:DVU_0428(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071510|imex:IM-22740-359 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006679(Adenine deaminase)|interpro:IPR006680(Amidohydrolase 1)|interpro:IPR011059(Metal-dependent hydrolase, composite)|interpro:IPR026912|refseq:YP_009665.1|interpro:IPR032466|refseq:WP_010937748.1|ensemblbacteria:AAS94924(transcript)|ensemblbacteria:DVU_0441(gene)|go:"GO:0000034"(adenine deaminase activity)|go:"GO:0006146"(adenine catabolic process)|entrezgene/locuslink:2796510(identity) interpro:IPR007138(Antibiotic biosynthesis monooxygenase)|interpro:IPR011008(Dimeric alpha-beta barrel)|refseq:YP_009652.1|refseq:WP_010937735.1|ensemblbacteria:AAS94911(transcript)|ensemblbacteria:DVU_0428(gene)|entrezgene/locuslink:2794671(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:1i0UssobF87+J1XtUNiaG5j9YTo882 rogid:OIb8nM6Sf+27ClVw9CgHj1d98E4882 intact-crc:6C2FDDC38655639A|rigid:CWItprfzqeL1ItjrPnTvOFMAxfc false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F06 uniprotkb:Q72E47 intact:EBI-10071594|ensemblbacteria:AAS94895 intact:EBI-10070747|ensemblbacteria:AAS95212 psi-mi:q72f06_desvh(display_long)|uniprotkb:DVU_0412(locus name) psi-mi:syv_desvh(display_long)|uniprotkb:Valyl-tRNA synthetase(gene name synonym)|uniprotkb:DVU_0732(locus name)|uniprotkb:valS(gene name)|psi-mi:valS(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071607|imex:IM-22740-365 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003148(Regulator of K+ conductance, N-terminal)|interpro:IPR006037(Regulator of K+ conductance, C-terminal)|refseq:YP_009636.1|refseq:WP_010937719.1|ensemblbacteria:AAS94895(transcript)|ensemblbacteria:DVU_0412(gene)|go:"GO:0006813"(potassium ion transport)|go:"GO:0008324"(cation transmembrane transporter activity)|interpro:IPR036291|interpro:IPR036721|entrezgene/locuslink:2795175(identity) interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR002300(Aminoacyl-tRNA synthetase, class Ia)|interpro:IPR002303(Valyl-tRNA synthetase, class Ia)|interpro:IPR009008(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR010978(tRNA-binding arm)|interpro:IPR013155(Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR019499|refseq:YP_009953.1|interpro:IPR033705|refseq:WP_010938033.1|go:"GO:0005737"(cytoplasm)|go:"GO:0006438"(valyl-tRNA aminoacylation)|ensemblbacteria:AAS95212(transcript)|ensemblbacteria:DVU_0732(gene)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004832"(valine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|interpro:IPR037118|entrezgene/locuslink:2794946(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.31" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:yKkRps0fmkcsje/d3aYXrnpKbSU882 rogid:ihfNZcOhLVvMrzLTZYvqd/vuySE882 intact-crc:CA4E48A806F47463|rigid:utoNj8iGXoJCMODkl31QoQyShL8 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F08 uniprotkb:Q729N0 intact:EBI-10071275|ensemblbacteria:AAS94893 intact:EBI-10071633|ensemblbacteria:AAS96793 psi-mi:q72f08_desvh(display_long)|uniprotkb:DVU_0410(locus name) psi-mi:q729n0_desvh(display_long)|uniprotkb:DVU_2320(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071665|imex:IM-22740-368 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009634.1|refseq:WP_010937717.1|ensemblbacteria:AAS94893(transcript)|ensemblbacteria:DVU_0410(gene)|entrezgene/locuslink:2793711(identity) interpro:IPR002830(Carboxylyase-related)|refseq:YP_011533.1|ensemblbacteria:AAS96793(transcript)|ensemblbacteria:DVU_2320(gene)|go:"GO:0016831"(carboxy-lyase activity)|entrezgene/locuslink:2795280(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.44" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2017/02/06 rogid:A1Se56KKXALmrNoMoeczNKYhxtM882 rogid:tEXoCvCaoNTr2ow+PSwYDIahyWw882 intact-crc:744812AEEC2C4E85|rigid:PE4Y26V/ALwxP/WoPBav9UjwYZA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q72CE6 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10069535|ensemblbacteria:AAS95815 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:lon_desvh(display_long)|uniprotkb:ATP-dependent protease La(gene name synonym)|uniprotkb:DVU_1337(locus name)|uniprotkb:lon(gene name)|psi-mi:lon(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071829|imex:IM-22740-376 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR003111(Peptidase S16, lon N-terminal)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004815(Peptidase S16, ATP-dependent protease La)|interpro:IPR008268(Peptidase S16, active site)|interpro:IPR008269(Peptidase S16, lon C-terminal)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR015947(PUA-like)|interpro:IPR020568|interpro:IPR027065|interpro:IPR027417|interpro:IPR027543|refseq:YP_010556.1|refseq:WP_010938632.1|ensemblbacteria:AAS95815(transcript)|ensemblbacteria:DVU_1337(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0034605"(cellular response to heat)|go:"GO:0043565"(sequence-specific DNA binding)|entrezgene/locuslink:2794585(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.26" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:K+5mhLOOcEzqnf49msI210n9o+s882 intact-crc:89B038A59F04C73A|rigid:JQrvJN9nkzs/HDMkLGNkM1uzvYU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q72AL0 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10067497|ensemblbacteria:AAS96458 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q72al0_desvh(display_long)|uniprotkb:DVU_1982(locus name)|uniprotkb:rhlE(gene name)|psi-mi:rhlE(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071829|imex:IM-22740-376 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR014014(RNA helicase, DEAD-box type, Q motif)|interpro:IPR027417|refseq:YP_011199.1|refseq:WP_010939268.1|ensemblbacteria:AAS96458(transcript)|ensemblbacteria:DVU_1982(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0016787"(hydrolase activity)|go:"GO:0005524"(ATP binding)|entrezgene/locuslink:2793788(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.98" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:zKmJjhrid6qDgJl5ptCURc+2Jfc882 intact-crc:89B038A59F04C73A|rigid:JQrvJN9nkzs/HDMkLGNkM1uzvYU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q726L8 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10065674|ensemblbacteria:AAS97559 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q726l8_desvh(display_long)|uniprotkb:DVU_3088(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071829|imex:IM-22740-376 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|refseq:YP_012299.1|refseq:WP_010940347.1|ensemblbacteria:AAS97559(transcript)|ensemblbacteria:DVU_3088(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0003724"(RNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016787"(hydrolase activity)|entrezgene/locuslink:2796439(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.72" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:ZAuTNjt+wSNLOJ2DiRDzBQWO7QY882 intact-crc:89B038A59F04C73A|rigid:JQrvJN9nkzs/HDMkLGNkM1uzvYU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q729X2 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10067430|ensemblbacteria:AAS96698 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q729x2_desvh(display_long)|uniprotkb:DVU_2225(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071829|imex:IM-22740-376 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR029045|refseq:YP_011438.1|refseq:WP_010939500.1|ensemblbacteria:AAS96698(transcript)|ensemblbacteria:DVU_2225(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016740"(transferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|entrezgene/locuslink:2795552(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:nPeYjaRYXUqUNiIyXBctrcfM1kA882 intact-crc:89B038A59F04C73A|rigid:JQrvJN9nkzs/HDMkLGNkM1uzvYU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72F92 uniprotkb:Q729X1 intact:EBI-10065677|ensemblbacteria:AAS94805 intact:EBI-10067436|ensemblbacteria:AAS96699 psi-mi:eno_desvh(display_long)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:DVU_0322(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short) psi-mi:q729x1_desvh(display_long)|uniprotkb:DVU_2226(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071829|imex:IM-22740-376 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|refseq:YP_009546.1|refseq:WP_010937629.1|ensemblbacteria:AAS94805(transcript)|ensemblbacteria:DVU_0322(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|interpro:IPR036849|entrezgene/locuslink:2794445(identity) interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:YP_011439.1|refseq:WP_010939501.1|ensemblbacteria:AAS96699(transcript)|ensemblbacteria:DVU_2226(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0016874"(ligase activity)|go:"GO:0046872"(metal ion binding)|entrezgene/locuslink:2795553(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.95" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:bE9/E1+RpJAQQgKSgeYacfgN7kk882 rogid:0kkK0a8V2P0I5n8rknJF0yJwqcQ882 intact-crc:89B038A59F04C73A|rigid:JQrvJN9nkzs/HDMkLGNkM1uzvYU false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FF0 uniprotkb:Q72FE8 intact:EBI-10071893|ensemblbacteria:AAS94747 intact:EBI-10071896|ensemblbacteria:AAS94749 psi-mi:q72ff0_desvh(display_long)|uniprotkb:DVU_0264(locus name) psi-mi:q72fe8_desvh(display_long)|uniprotkb:DVU_0266(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071909|imex:IM-22740-380 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004017(Cysteine-rich region, CCG)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR017896|interpro:IPR017900|refseq:YP_009488.1|refseq:WP_010937573.1|ensemblbacteria:AAS94747(transcript)|ensemblbacteria:DVU_0264(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795006(identity) ensemblbacteria:AAS94749(transcript)|ensemblbacteria:DVU_0266(gene)|interpro:IPR015943(WD40/YVTN repeat-like)|entrezgene/locuslink:2795008(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 0.99" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:t19Ou93+B6vQ0rFvwWG5c05wJA8882 rogid:pAQeBO0nB+suC3Z/7B2a1Bna8jc882 intact-crc:80A846AD2464706B|rigid:LXbXaTJQxabfK449gl2FqBqh9nc false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FP0 uniprotkb:Q72FP1 intact:EBI-10071733|ensemblbacteria:AAS94657 intact:EBI-10071935|ensemblbacteria:AAS94656 psi-mi:q72fp0_desvh(display_long)|uniprotkb:DVU_0173(locus name) psi-mi:q72fp1_desvh(display_long)|uniprotkb:DVU_0172(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10071964|imex:IM-22740-384 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010937484.1|interpro:IPR006656(Molybdopterin oxidoreductase)|interpro:IPR006657(Molydopterin dinucleotide-binding region)|interpro:IPR006963(Molybdopterin oxidoreductase Fe4S4 region)|interpro:IPR009010(Aspartate decarboxylase-like fold)|interpro:IPR027467|refseq:YP_009398.1|ensemblbacteria:AAS94657(transcript)|ensemblbacteria:DVU_0173(gene)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0043546"(molybdopterin cofactor binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|entrezgene/locuslink:2795603(identity) interpro:IPR017896|interpro:IPR017900|refseq:YP_009397.1|refseq:WP_010937483.1|ensemblbacteria:AAS94656(transcript)|ensemblbacteria:DVU_0172(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2795602(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:HOWDlzWfMJqA2qohHsZrDe3Oqqk882 rogid:6oB91/fAr4PPRje2nLQv5a1GfNE882 intact-crc:E8368D4834D509B8|rigid:w/TsHIIhFmNwe1S7115HxUDTtvM false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72FZ5 uniprotkb:Q725I1 intact:EBI-10072083|ensemblbacteria:AAS94552 intact:EBI-10072079|ensemblbacteria:AAS97638 psi-mi:q72fz5_desvh(display_long)|uniprotkb:DVU_0068(locus name) psi-mi:gsa_desvh(display_long)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym)|uniprotkb:DVU_3168(locus name)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072096|imex:IM-22740-392 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR027417|refseq:YP_009293.1|refseq:WP_010937379.1|ensemblbacteria:AAS94552(transcript)|ensemblbacteria:DVU_0068(gene)|entrezgene/locuslink:2796766(identity) interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|refseq:YP_012378.1|refseq:WP_010940426.1|ensemblbacteria:AAS97638(transcript)|ensemblbacteria:DVU_3168(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|entrezgene/locuslink:2795873(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.57" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:JkRrCmmOHyVGoSQplT9fy0+y7jM882 rogid:favigLRkFM2wUwADh0JCloRp2DQ882 intact-crc:9FA3D30433FE0151|rigid:/ziOgrxGmMvzsMtfbqp9yVGgZv0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72G07 uniprotkb:Q72AX1 intact:EBI-10072125|ensemblbacteria:AAS94540 intact:EBI-10072129|ensemblbacteria:AAS96345 psi-mi:q72g07_desvh(display_long)|uniprotkb:DVU_0056(locus name)|uniprotkb:cheV-1(gene name)|psi-mi:cheV-1(display_short) psi-mi:q72ax1_desvh(display_long)|uniprotkb:DVU_1869(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072145|imex:IM-22740-395 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:YP_009281.1|refseq:WP_010937367.1|ensemblbacteria:AAS94540(transcript)|ensemblbacteria:DVU_0056(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|interpro:IPR036061|entrezgene/locuslink:2794179(identity) interpro:IPR033479|interpro:IPR000014(PAS)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:YP_011086.1|refseq:WP_010939155.1|ensemblbacteria:AAS96345(transcript)|ensemblbacteria:DVU_1869(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|interpro:IPR035965|entrezgene/locuslink:2794313(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.28" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:Yab6MXoWDr2EF29IgOQuoTGOn70882 rogid:zODmBSiePXYgrHWiAR5ouEjjwzU882 intact-crc:960AC9318E7BC0B8|rigid:+NrxW9Y83YhpNcp4SaB6hKHl6xA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72G08 uniprotkb:Q72EB4 intact:EBI-10072158|ensemblbacteria:AAS94539 intact:EBI-10067158|ensemblbacteria:AAS95145 psi-mi:isph_desvh(display_long)|uniprotkb:DVU_0055(locus name)|uniprotkb:ispH(gene name)|psi-mi:ispH(display_short) psi-mi:q72eb4_desvh(display_long)|uniprotkb:Nitrogenase metalloclusters biosynthesis protein NifS(gene name synonym)|uniprotkb:DVU_0664(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072175|imex:IM-22740-397 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003451(LytB protein)|refseq:YP_009280.1|refseq:WP_010937366.1|ensemblbacteria:AAS94539(transcript)|ensemblbacteria:DVU_0055(gene)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050992"(dimethylallyl diphosphate biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0051745"(4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity)|entrezgene/locuslink:2794178(identity) refseq:WP_010937967.1|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017772(Cysteine desulphurase, NifS, bacterial/archaeal)|interpro:IPR020578|refseq:YP_009886.1|ensemblbacteria:AAS95145(transcript)|ensemblbacteria:DVU_0664(gene)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0016829"(lyase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|entrezgene/locuslink:2793603(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 0.91" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:ByPumi3wifO+Jw0OBXZG3SpnqEg882 rogid:0WnkRVzLg80NtmD49OMfwNLgHDU882 intact-crc:7722A28C3E8265DF|rigid:UwD/bGFu1u48V2hMr/QJZDCvilE false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WG3 intact:EBI-10053344 intact:EBI-10072188|ensemblbacteria:AAS94338 - psi-mi:q72wg3_desvh(display_long)|uniprotkb:DVUA0126(locus name) psi-mi:dorf2161(display_short)|psi-mi:EBI-10053344(display_long) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072203|imex:IM-22740-399 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010261(Tir chaperone)|refseq:YP_009166.1|refseq:WP_011176704.1|ensemblbacteria:AAS94338(transcript)|ensemblbacteria:DVUA0126(gene)|go:"GO:0030254"(protein secretion by the type III secretion system)|entrezgene/locuslink:2781523(identity) - psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:QFl4aHSbOFOvUqm3WEEUnp4x7cQ882 rogid:gFoJpy53jMsRooePpzgy94NMCW4882 intact-crc:DBB151CDEEBC213D|rigid:K5+/JH8+TwQ1X6V5whPs7ejnGZg false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WH5 uniprotkb:Q72WH4 intact:EBI-10072218|ensemblbacteria:AAS94348 intact:EBI-10072215|ensemblbacteria:AAS94347 psi-mi:q72wh5_desvh(display_long)|uniprotkb:DVUA0114(locus name) psi-mi:q72wh4_desvh(display_long)|uniprotkb:DVUA0115(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072258|imex:IM-22740-402 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009154.1|refseq:WP_011176692.1|ensemblbacteria:AAS94348(transcript)|ensemblbacteria:DVUA0114(gene)|entrezgene/locuslink:2781616(identity) interpro:IPR021123|refseq:YP_009155.1|refseq:WP_011176693.1|ensemblbacteria:AAS94347(transcript)|ensemblbacteria:DVUA0115(gene)|go:"GO:0015031"(protein transport)|interpro:IPR037203|entrezgene/locuslink:2781477(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+0spAKjCQnAsVe55AgBEJ7Dfqe8882 rogid:qaPJq/XjMX6LqSj6E7ZDX2GxFAc882 intact-crc:44B5384F934E4CA3|rigid:zO8p+Qwm4oSQvP6R/NIbU1fUIwA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WH5 uniprotkb:Q72WH3 intact:EBI-10072218|ensemblbacteria:AAS94348 intact:EBI-10072221|ensemblbacteria:AAS94346 psi-mi:q72wh5_desvh(display_long)|uniprotkb:DVUA0114(locus name) psi-mi:q72wh3_desvh(display_long)|uniprotkb:DVUA0116(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072258|imex:IM-22740-402 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:YP_009154.1|refseq:WP_011176692.1|ensemblbacteria:AAS94348(transcript)|ensemblbacteria:DVUA0114(gene)|entrezgene/locuslink:2781616(identity) interpro:IPR011990(Tetratricopeptide-like helical)|refseq:YP_009156.1|refseq:WP_011176694.1|ensemblbacteria:AAS94346(transcript)|ensemblbacteria:DVUA0116(gene)|entrezgene/locuslink:2781476(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:+0spAKjCQnAsVe55AgBEJ7Dfqe8882 rogid:zJxM1jc7dG4BJwLuvACxSVGZCYU882 intact-crc:44B5384F934E4CA3|rigid:zO8p+Qwm4oSQvP6R/NIbU1fUIwA false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WI3 uniprotkb:Q72WH8 intact:EBI-10072284|ensemblbacteria:AAS94355 intact:EBI-10072281|ensemblbacteria:AAS94351 psi-mi:q72wi3_desvh(display_long)|uniprotkb:DVUA0106(locus name) psi-mi:q72wh8_desvh(display_long)|uniprotkb:DVUA0111(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072301|imex:IM-22740-404 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010812(Hypersensitivity response secretion HrpJ)|interpro:IPR013351(Type III secretion system effector delivery regulator TyeA)|interpro:IPR013401(Type III secretion regulator, YopN/LcrE/InvE/MxiC)|interpro:IPR015144(TyeA)|refseq:YP_009146.1|refseq:WP_011176684.1|ensemblbacteria:AAS94355(transcript)|ensemblbacteria:DVUA0106(gene)|go:"GO:0009986"(cell surface)|go:"GO:0019867"(outer membrane)|go:"GO:0030254"(protein secretion by the type III secretion system)|go:"GO:0050709"(negative regulation of protein secretion)|interpro:IPR038347|entrezgene/locuslink:2781592(identity) refseq:YP_009151.1|ensemblbacteria:AAS94351(transcript)|ensemblbacteria:DVUA0111(gene)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2781619(identity) psi-mi:"MI:0469"(intact) comment:"Author predicted score: 1.00" comment: figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:AIS3OAkJBUHeiwmxL25TW8Zehac882 rogid:lY/mhcbt9DlhHZgNpN87f3nQlnU882 intact-crc:E9AEDD826DAD73DF|rigid:dKuK8GgtfDPYCqtykJE6DMhBQCI false - tandem tag:c-c - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WI4 uniprotkb:Q72WI3 intact:EBI-10072278|ensemblbacteria:AAS94480 intact:EBI-10072284|ensemblbacteria:AAS94355 psi-mi:q72wi4_desvh(display_long)|uniprotkb:DVUA0105(locus name) psi-mi:q72wi3_desvh(display_long)|uniprotkb:DVUA0106(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072363|imex:IM-22740-408 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012673(Type III secretion system chaperone SycN)|refseq:YP_009145.1|refseq:WP_011176683.1|ensemblbacteria:AAS94480(transcript)|ensemblbacteria:DVUA0105(gene)|go:"GO:0009306"(protein secretion)|entrezgene/locuslink:2781488(identity) interpro:IPR010812(Hypersensitivity response secretion HrpJ)|interpro:IPR013351(Type III secretion system effector delivery regulator TyeA)|interpro:IPR013401(Type III secretion regulator, YopN/LcrE/InvE/MxiC)|interpro:IPR015144(TyeA)|refseq:YP_009146.1|refseq:WP_011176684.1|ensemblbacteria:AAS94355(transcript)|ensemblbacteria:DVUA0106(gene)|go:"GO:0009986"(cell surface)|go:"GO:0019867"(outer membrane)|go:"GO:0030254"(protein secretion by the type III secretion system)|go:"GO:0050709"(negative regulation of protein secretion)|interpro:IPR038347|entrezgene/locuslink:2781592(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:bisaqQ/I5kFOM9/CgIym7I7vrvU882 rogid:AIS3OAkJBUHeiwmxL25TW8Zehac882 intact-crc:2A7F3DE339A43ACF|rigid:dbmFJsnIo6oYoHQzkUMIP+ElXf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification) uniprotkb:Q72WI4 uniprotkb:Q72WH8 intact:EBI-10072278|ensemblbacteria:AAS94480 intact:EBI-10072281|ensemblbacteria:AAS94351 psi-mi:q72wi4_desvh(display_long)|uniprotkb:DVUA0105(locus name) psi-mi:q72wh8_desvh(display_long)|uniprotkb:DVUA0111(locus name) psi-mi:"MI:0676"(tandem affinity purification) Shatsky et al. (2016) pubmed:26873250|imex:IM-22740 taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") psi-mi:"MI:0914"(association) psi-mi:"MI:0469"(IntAct) intact:EBI-10072363|imex:IM-22740-408 - psi-mi:"MI:1060"(spoke expansion) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012673(Type III secretion system chaperone SycN)|refseq:YP_009145.1|refseq:WP_011176683.1|ensemblbacteria:AAS94480(transcript)|ensemblbacteria:DVUA0105(gene)|go:"GO:0009306"(protein secretion)|entrezgene/locuslink:2781488(identity) refseq:YP_009151.1|ensemblbacteria:AAS94351(transcript)|ensemblbacteria:DVUA0111(gene)|go:"GO:0016021"(integral component of membrane)|entrezgene/locuslink:2781619(identity) psi-mi:"MI:0469"(intact) comment: comment:"Author predicted score: 1.00" figure legend:Dataset S8|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:882(desvh)|taxid:882("Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)") - 2014/06/27 2015/01/16 rogid:bisaqQ/I5kFOM9/CgIym7I7vrvU882 rogid:lY/mhcbt9DlhHZgNpN87f3nQlnU882 intact-crc:2A7F3DE339A43ACF|rigid:dbmFJsnIo6oYoHQzkUMIP+ElXf0 false tandem tag:c-c - - - psi-mi:"MI:0102"(sequence tag identification) psi-mi:"MI:0102"(sequence tag identification)