#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:O25516 uniprotkb:O24881 intact:EBI-9260346|ensemblbacteria:AAD07891 intact:EBI-9260295|ensemblbacteria:AAD07120 psi-mi:thim_helpy(display_long)|uniprotkb:thiM(gene name)|psi-mi:thiM(display_short)|uniprotkb:4-methyl-5-beta-hydroxyethylthiazole kinase(gene name synonym)|uniprotkb:HP_0845(locus name) psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316701|imex:IM-22256-1 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207638.1|interpro:IPR000417(Hydroxyethylthiazole kinase)|interpro:IPR029056|refseq:WP_015056066.1|ensemblbacteria:AAD07891(transcript)|ensemblbacteria:HP_0845(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004417"(hydroxyethylthiazole kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|uniprotkb:O25516(identity) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:n+j3gQHERWJWRYiTZXSVhxdo2HE85962 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 intact-crc:4B417BB927E01F47|rigid:73hT2AGz0RVV8mLT0BTcIRTMZ0g false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24881 uniprotkb:O25641 intact:EBI-9260295|ensemblbacteria:AAD07120 intact:EBI-9260377|uniprotkb:Q7B7Q1|ensemblbacteria:AAD08038 psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:o25641_helpy(display_long)|uniprotkb:HP_0993(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316737|imex:IM-22256-3 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) refseq:WP_000006537.1|refseq:NP_207784.1|ensemblbacteria:AAD08038(transcript)|ensemblbacteria:HP_0993(gene)|uniprotkb:O25641(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 rogid:4xbt/h+Vi75oHyXJG+QFiJlXY7E85962 intact-crc:A1DDC52330A0592D|rigid:yKEyrsnpx4gg7tgwxxfzODGQSw8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24881 uniprotkb:O25669 intact:EBI-9260295|ensemblbacteria:AAD07120 intact:EBI-6415953|ensemblbacteria:AAD08067 psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316755|imex:IM-22256-4 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 intact-crc:EA44C8C643200016|rigid:dO7D8WJ0sd8iCA62wMOWtx4jHkY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25598 uniprotkb:O24881 intact:EBI-7512998|intact:MINT-160406|ensemblbacteria:AAD07989 intact:EBI-9260295|ensemblbacteria:AAD07120 psi-mi:y944_helpy(display_long)|uniprotkb:HP_0944(locus name) psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316719|imex:IM-22256-2 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000665817.1|mint:O25598|refseq:NP_207736.1|ensemblbacteria:AAD07989(transcript)|ensemblbacteria:HP_0944(gene)|go:"GO:0005829"(cytosol)|go:"GO:0019239"(deaminase activity)|go:"GO:1901565"(organonitrogen compound catabolic process)|interpro:IPR006056(YjgF-like protein)|interpro:IPR006175(Endoribonuclease L-PSP)|interpro:IPR019897|interpro:IPR035959|dip:DIP-3595N|uniprotkb:O25598(identity) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:64ij/uEL8WO2YderVwy96TZCDes85962 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 intact-crc:5FD72DF368A32E7F|rigid:qfgEg1K9HzeyRDN5u87LEMMpC3I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25131 uniprotkb:O24883 intact:EBI-9260429|ensemblbacteria:AAD07436 intact:EBI-528018|ensemblbacteria:AAD07110 psi-mi:o25131_helpy(display_long)|uniprotkb:HP_0367(locus name) psi-mi:o24883_helpy(display_long)|uniprotkb:HP_0042(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316791|imex:IM-22256-6 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000036594.1|refseq:NP_207165.1|ensemblbacteria:AAD07436(transcript)|ensemblbacteria:HP_0367(gene)|uniprotkb:O25131(identity) ensemblbacteria:AAD07110(transcript)|ensemblbacteria:HP_0042(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR005498(Bacterial conjugation TrbI-like protein)|interpro:IPR042217|rcsb pdb:2BHV|mint:O24883|dip:DIP-3109N|uniprotkb:O24883(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:vNcwqrbdOwZJqhozwAb0bBST2t085962 rogid:RbyyL+OJeh+4eZ+9aPt6Ui3T8BI85962 intact-crc:B5BFE0E342928131|rigid:ZHuzm/oef/oxkjcvtrzKaHr6mcU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24883 uniprotkb:O24972 intact:EBI-528018|ensemblbacteria:AAD07110 intact:EBI-9260411|uniprotkb:O24971|ensemblbacteria:AAD07233|ensemblbacteria:AAD07239 psi-mi:o24883_helpy(display_long)|uniprotkb:HP_0042(locus name) psi-mi:arss_helpy(display_long)|uniprotkb:arsS(gene name)|psi-mi:arsS(display_short)|uniprotkb:HP_0164/HP_0165(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316773|imex:IM-22256-5 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07110(transcript)|ensemblbacteria:HP_0042(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR005498(Bacterial conjugation TrbI-like protein)|interpro:IPR042217|rcsb pdb:2BHV|mint:O24883|dip:DIP-3109N|uniprotkb:O24883(identity) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR036097|interpro:IPR036890|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|ensemblbacteria:AAD07233(transcript)|ensemblbacteria:AAD07239(transcript)|ensemblbacteria:HP_0164(gene)|ensemblbacteria:HP_0165(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24971(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2020/01/08 rogid:RbyyL+OJeh+4eZ+9aPt6Ui3T8BI85962 rogid:iGm8PnU59Azwe5NrINkshU2pVEA85962 intact-crc:9446C3E6436B0353|rigid:itTNZgsjgl9T2jgf5jHForsQXNE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25581 uniprotkb:O24883 intact:EBI-7675108|ensemblbacteria:AAD07977|intact:MINT-177793 intact:EBI-528018|ensemblbacteria:AAD07110 psi-mi:y924_helpy(display_long)|uniprotkb:HP_0924(locus name) psi-mi:o24883_helpy(display_long)|uniprotkb:HP_0042(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316827|imex:IM-22256-8 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07977(transcript)|ensemblbacteria:HP_0924(gene)|go:"GO:0006725"(cellular aromatic compound metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR004370(4-oxalocrotonate tautomerase)|interpro:IPR014347(Tautomerase)|interpro:IPR018191|rcsb pdb:2ORM|rcsb pdb:3M21|mint:O25581|refseq:NP_207716.1|refseq:WP_001115881.1|dip:DIP-3525N|uniprotkb:O25581(identity) ensemblbacteria:AAD07110(transcript)|ensemblbacteria:HP_0042(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR005498(Bacterial conjugation TrbI-like protein)|interpro:IPR042217|rcsb pdb:2BHV|mint:O24883|dip:DIP-3109N|uniprotkb:O24883(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uTfgVa1jx934RIxFBjUfit8hmqU85962 rogid:RbyyL+OJeh+4eZ+9aPt6Ui3T8BI85962 intact-crc:9685C48D0BED8474|rigid:caCgDZ9XslbCxJ6hVl/nfrYlPCY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56122 uniprotkb:O24883 intact:EBI-7500271|intact:MINT-176132|ensemblbacteria:AAD07726 intact:EBI-528018|ensemblbacteria:AAD07110 psi-mi:aroc_helpy(display_long)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym) psi-mi:o24883_helpy(display_long)|uniprotkb:HP_0042(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316845|imex:IM-22256-9 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56122|refseq:WP_001094036.1|interpro:IPR020541|refseq:NP_207457.1|interpro:IPR000453(Chorismate synthase)|ensemblbacteria:AAD07726(transcript)|ensemblbacteria:HP_0663(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0010181"(FMN binding)|rcsb pdb:1UM0|rcsb pdb:1UMF|interpro:IPR035904|uniprotkb:P56122(identity) ensemblbacteria:AAD07110(transcript)|ensemblbacteria:HP_0042(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR005498(Bacterial conjugation TrbI-like protein)|interpro:IPR042217|rcsb pdb:2BHV|mint:O24883|dip:DIP-3109N|uniprotkb:O24883(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ALKO1omI2Rxmk057Rl7wyKvMlc85962 rogid:RbyyL+OJeh+4eZ+9aPt6Ui3T8BI85962 intact-crc:C10D6FCE1F553D7D|rigid:LnBpeDT/fzM8DBJCgCsvNS64Ggo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O24883 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-528018|ensemblbacteria:AAD07110 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o24883_helpy(display_long)|uniprotkb:HP_0042(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316809|imex:IM-22256-7 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) ensemblbacteria:AAD07110(transcript)|ensemblbacteria:HP_0042(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR005498(Bacterial conjugation TrbI-like protein)|interpro:IPR042217|rcsb pdb:2BHV|mint:O24883|dip:DIP-3109N|uniprotkb:O24883(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:RbyyL+OJeh+4eZ+9aPt6Ui3T8BI85962 intact-crc:74AA9D6A858A3BAB|rigid:YD7n5NNxryhoSur5N7D9sYGFEQk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24898 uniprotkb:O26080 intact:EBI-9260525|ensemblbacteria:AAD07135 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:o24898_helpy(display_long)|uniprotkb:HP_0057(locus name) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316917|imex:IM-22256-13 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849034.1|refseq:NP_206858.1|ensemblbacteria:AAD07135(transcript)|ensemblbacteria:HP_0057(gene)|uniprotkb:O24898(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:HKKphp9mlUQJvK1X+NDhvFxBgp085962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:AE133B9ABFCFA247|rigid:IKTTN2ET7snx5dHT6gms5UZZYJA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O24898 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9260525|ensemblbacteria:AAD07135 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o24898_helpy(display_long)|uniprotkb:HP_0057(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316899|imex:IM-22256-12 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) refseq:WP_000849034.1|refseq:NP_206858.1|ensemblbacteria:AAD07135(transcript)|ensemblbacteria:HP_0057(gene)|uniprotkb:O24898(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:HKKphp9mlUQJvK1X+NDhvFxBgp085962 intact-crc:4CF2CEDA3F8F99CA|rigid:fYY4drQjG+/G6RFajBuv6ohcmNE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24890 uniprotkb:O24890 intact:EBI-9260507|ensemblbacteria:AAD07122 intact:EBI-9260507|ensemblbacteria:AAD07122 psi-mi:o24890_helpy(display_long)|uniprotkb:HP_0049(locus name) psi-mi:o24890_helpy(display_long)|uniprotkb:HP_0049(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316881|imex:IM-22256-11 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000827275.1|rcsb pdb:2CMU|interpro:IPR007466(Peptidyl-arginine deiminase, Porphyromonas-type)|refseq:NP_206850.1|ensemblbacteria:AAD07122(transcript)|ensemblbacteria:HP_0049(gene)|go:"GO:0004668"(protein-arginine deiminase activity)|go:"GO:0009446"(putrescine biosynthetic process)|uniprotkb:O24890(identity) refseq:WP_000827275.1|rcsb pdb:2CMU|interpro:IPR007466(Peptidyl-arginine deiminase, Porphyromonas-type)|refseq:NP_206850.1|ensemblbacteria:AAD07122(transcript)|ensemblbacteria:HP_0049(gene)|go:"GO:0004668"(protein-arginine deiminase activity)|go:"GO:0009446"(putrescine biosynthetic process)|uniprotkb:O24890(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kcO1xu6C9UADmUnKqWof6+tdOLs85962 rogid:kcO1xu6C9UADmUnKqWof6+tdOLs85962 intact-crc:8AF92F3E3E614007|rigid:CdricYSmYrV3sMmamRGGxQhmBYM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24886 uniprotkb:O24886 intact:EBI-7498579|intact:MINT-174103|uniprotkb:Q7BA93|ensemblbacteria:AAD07113 intact:EBI-7498579|intact:MINT-174103|uniprotkb:Q7BA93|ensemblbacteria:AAD07113 psi-mi:o24886_helpy(display_long)|uniprotkb:fcl(gene name)|psi-mi:fcl(display_short)|uniprotkb:GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase(gene name synonym)|uniprotkb:HP_0045(locus name) psi-mi:o24886_helpy(display_long)|uniprotkb:fcl(gene name)|psi-mi:fcl(display_short)|uniprotkb:GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase(gene name synonym)|uniprotkb:HP_0045(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316863|imex:IM-22256-10 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24886|refseq:WP_001002442.1|refseq:NP_206846.1|ensemblbacteria:AAD07113(transcript)|ensemblbacteria:HP_0045(gene)|go:"GO:0016853"(isomerase activity)|go:"GO:0042351"('de novo' GDP-L-fucose biosynthetic process)|go:"GO:0050577"(GDP-L-fucose synthase activity)|go:"GO:0070401"(NADP+ binding)|interpro:IPR001509(NAD-dependent epimerase/dehydratase)|interpro:IPR028614|interpro:IPR036291|dip:DIP-3119N|uniprotkb:O24886(identity) mint:O24886|refseq:WP_001002442.1|refseq:NP_206846.1|ensemblbacteria:AAD07113(transcript)|ensemblbacteria:HP_0045(gene)|go:"GO:0016853"(isomerase activity)|go:"GO:0042351"('de novo' GDP-L-fucose biosynthetic process)|go:"GO:0050577"(GDP-L-fucose synthase activity)|go:"GO:0070401"(NADP+ binding)|interpro:IPR001509(NAD-dependent epimerase/dehydratase)|interpro:IPR028614|interpro:IPR036291|dip:DIP-3119N|uniprotkb:O24886(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ot6e8Mz5VLtK7H7t66qIf+HO8Mc85962 rogid:ot6e8Mz5VLtK7H7t66qIf+HO8Mc85962 intact-crc:E4ADF8F497756CD6|rigid:+h8xYqf0FfNLDXqSkQH399qLIxs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZN32 uniprotkb:O24898 intact:EBI-9260158|ensemblbacteria:AAD05612 intact:EBI-9260525|ensemblbacteria:AAD07135 psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:o24898_helpy(display_long)|uniprotkb:HP_0057(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316935|imex:IM-22256-14 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) refseq:WP_000849034.1|refseq:NP_206858.1|ensemblbacteria:AAD07135(transcript)|ensemblbacteria:HP_0057(gene)|uniprotkb:O24898(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 rogid:HKKphp9mlUQJvK1X+NDhvFxBgp085962 intact-crc:334ED141C8897252|rigid:3sOxXwZMDHmULZrbK09XhCYZlEw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24903 uniprotkb:O26083 intact:EBI-7517824|intact:MINT-171938|ensemblbacteria:AAD07140 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:o24903_helpy(display_long)|uniprotkb:HP_0063(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317007|imex:IM-22256-18 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24903|refseq:WP_000852747.1|refseq:NP_206863.1|ensemblbacteria:AAD07140(transcript)|ensemblbacteria:HP_0063(gene)|interpro:IPR032869|dip:DIP-3130N|uniprotkb:O24903(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JU4EcErKcrX631/gTvT7Fdmj51M85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:9851E7F4B0D0D83A|rigid:XdbxxChbCuMtPi259l2cW29ghI8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24903 uniprotkb:O25884 intact:EBI-7517824|intact:MINT-171938|ensemblbacteria:AAD07140 intact:EBI-7563847|intact:MINT-171833|ensemblbacteria:AAD08376 psi-mi:o24903_helpy(display_long)|uniprotkb:HP_0063(locus name) psi-mi:o25884_helpy(display_long)|uniprotkb:HP_1326(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316989|imex:IM-22256-17 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24903|refseq:WP_000852747.1|refseq:NP_206863.1|ensemblbacteria:AAD07140(transcript)|ensemblbacteria:HP_0063(gene)|interpro:IPR032869|dip:DIP-3130N|uniprotkb:O24903(identity) mint:O25884|refseq:WP_000731617.1|refseq:NP_208118.1|ensemblbacteria:AAD08376(transcript)|ensemblbacteria:HP_1326(gene)|interpro:IPR032693|dip:DIP-3424N|uniprotkb:O25884(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JU4EcErKcrX631/gTvT7Fdmj51M85962 rogid:2GEiy82NYJExrkehNqEbNjZmsIQ85962 intact-crc:CC35F12C05C41A8C|rigid:X/W8yPV5urmrq54kUPZfPgZ/LjI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24904 uniprotkb:O24903 intact:EBI-7517814|intact:MINT-171932|ensemblbacteria:AAD07141 intact:EBI-7517824|intact:MINT-171938|ensemblbacteria:AAD07140 psi-mi:o24904_helpy(display_long)|uniprotkb:HP_0064(locus name) psi-mi:o24903_helpy(display_long)|uniprotkb:HP_0063(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316953|imex:IM-22256-15 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24904|refseq:WP_000447902.1|refseq:NP_206864.1|ensemblbacteria:AAD07141(transcript)|ensemblbacteria:HP_0064(gene)|interpro:IPR018958|interpro:IPR037883|dip:DIP-3129N|uniprotkb:O24904(identity) mint:O24903|refseq:WP_000852747.1|refseq:NP_206863.1|ensemblbacteria:AAD07140(transcript)|ensemblbacteria:HP_0063(gene)|interpro:IPR032869|dip:DIP-3130N|uniprotkb:O24903(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2lCumHAAR0GpfVdvJ/+bU9UbjEY85962 rogid:JU4EcErKcrX631/gTvT7Fdmj51M85962 intact-crc:AD6F1D7AFDCE8AAF|rigid:X4q+42VG2Yg2uT0G6fOBF5aLEM8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24903 uniprotkb:O25265 intact:EBI-7517824|intact:MINT-171938|ensemblbacteria:AAD07140 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:o24903_helpy(display_long)|uniprotkb:HP_0063(locus name) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9316971|imex:IM-22256-16 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24903|refseq:WP_000852747.1|refseq:NP_206863.1|ensemblbacteria:AAD07140(transcript)|ensemblbacteria:HP_0063(gene)|interpro:IPR032869|dip:DIP-3130N|uniprotkb:O24903(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JU4EcErKcrX631/gTvT7Fdmj51M85962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:A12930AD8FDC18A8|rigid:bOp5YQbUBMej7KG+9N0J0RviaHQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24864 uniprotkb:O24911 intact:EBI-7735710|ensemblbacteria:AAD07087|intact:MINT-164782 intact:EBI-9260661|ensemblbacteria:AAD07152 psi-mi:chev1_helpy(display_long)|uniprotkb:cheV1(gene name)|psi-mi:cheV1(display_short)|uniprotkb:HP_0019(locus name) psi-mi:o24911_helpy(display_long)|uniprotkb:HP_0082(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317043|imex:IM-22256-20 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24864|ensemblbacteria:AAD07087(transcript)|ensemblbacteria:HP_0019(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|interpro:IPR036061|refseq:WP_000785454.1|refseq:NP_206821.1|dip:DIP-3650N|uniprotkb:O24864(identity) refseq:WP_000843374.1|rcsb pdb:5WBF|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:NP_206882.1|ensemblbacteria:AAD07152(transcript)|ensemblbacteria:HP_0082(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24911(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:XXysqCSx1y7ktkhCQjt+1E1qvwU85962 rogid:xJRAsgOrtjWwJE34gRFc2OSzMVY85962 intact-crc:B6A1FA9CE40AAAF0|rigid:RqzP1rOEZW1isorF6GlAEyL/+cg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24911 uniprotkb:O25154 intact:EBI-9260661|ensemblbacteria:AAD07152 intact:EBI-9260679|ensemblbacteria:AAD07458 psi-mi:o24911_helpy(display_long)|uniprotkb:HP_0082(locus name) psi-mi:chev3_helpy(display_long)|uniprotkb:cheV3(gene name)|psi-mi:cheV3(display_short)|uniprotkb:HP_0393(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317061|imex:IM-22256-21 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000843374.1|rcsb pdb:5WBF|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:NP_206882.1|ensemblbacteria:AAD07152(transcript)|ensemblbacteria:HP_0082(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24911(identity) refseq:WP_000818647.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:NP_207191.1|interpro:IPR036061|ensemblbacteria:AAD07458(transcript)|ensemblbacteria:HP_0393(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|uniprotkb:O25154(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:xJRAsgOrtjWwJE34gRFc2OSzMVY85962 rogid:4Ehxv3H/rtna3/+juonpRarYHAk85962 intact-crc:36421002D6E46588|rigid:1ltpLeAldZLDDz3o0bxthFF//Iw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24903 uniprotkb:Q9ZN16 intact:EBI-7517824|intact:MINT-171938|ensemblbacteria:AAD07140 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:o24903_helpy(display_long)|uniprotkb:HP_0063(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317025|imex:IM-22256-19 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24903|refseq:WP_000852747.1|refseq:NP_206863.1|ensemblbacteria:AAD07140(transcript)|ensemblbacteria:HP_0063(gene)|interpro:IPR032869|dip:DIP-3130N|uniprotkb:O24903(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JU4EcErKcrX631/gTvT7Fdmj51M85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:32D9AC33B2879DA8|rigid:irUR159Vg76JRl59agADx68VeqM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24854 uniprotkb:O25448 intact:EBI-7694415|ensemblbacteria:AAD07075|intact:MINT-164433 intact:EBI-7499990|intact:MINT-160305|ensemblbacteria:AAD07803 psi-mi:risb_helpy(display_long)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short)|uniprotkb:ribE(gene name synonym)|uniprotkb:HP_0002(locus name) psi-mi:o25448_helpy(display_long)|uniprotkb:HP_0753(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317169|imex:IM-22256-27 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07075(transcript)|ensemblbacteria:HP_0002(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|interpro:IPR034964|interpro:IPR036467|mint:O24854|refseq:NP_206804.1|refseq:WP_001165637.1|dip:DIP-3051N|uniprotkb:O24854(identity) mint:O25448|refseq:WP_001199081.1|refseq:NP_207546.1|ensemblbacteria:AAD07803(transcript)|ensemblbacteria:HP_0753(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR003713(Flagellar protein FliS)|interpro:IPR036584|rcsb pdb:3IQC|rcsb pdb:3K1I|dip:DIP-3458N|uniprotkb:O25448(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The beta subunit catalyzes the condensation of 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate yielding 6,7-dimethyl-8-lumazine" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tsKVhhME09SvfgJwuwa2/8qOsnY85962 rogid:cteyYkuK7MMhuLoDSwYpQRstj3U85962 intact-crc:4671519B1283B50C|rigid:XKN3s8i3O+qAh2TogmKPNfdzRXk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24854 uniprotkb:O24854 intact:EBI-7694415|ensemblbacteria:AAD07075|intact:MINT-164433 intact:EBI-7694415|ensemblbacteria:AAD07075|intact:MINT-164433 psi-mi:risb_helpy(display_long)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short)|uniprotkb:ribE(gene name synonym)|uniprotkb:HP_0002(locus name) psi-mi:risb_helpy(display_long)|uniprotkb:ribH(gene name)|psi-mi:ribH(display_short)|uniprotkb:ribE(gene name synonym)|uniprotkb:HP_0002(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317151|imex:IM-22256-26 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07075(transcript)|ensemblbacteria:HP_0002(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|interpro:IPR034964|interpro:IPR036467|mint:O24854|refseq:NP_206804.1|refseq:WP_001165637.1|dip:DIP-3051N|uniprotkb:O24854(identity) ensemblbacteria:AAD07075(transcript)|ensemblbacteria:HP_0002(gene)|go:"GO:0000906"(6,7-dimethyl-8-ribityllumazine synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0009349"(riboflavin synthase complex)|interpro:IPR002180(6,7-dimethyl-8-ribityllumazine synthase)|interpro:IPR034964|interpro:IPR036467|mint:O24854|refseq:NP_206804.1|refseq:WP_001165637.1|dip:DIP-3051N|uniprotkb:O24854(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The beta subunit catalyzes the condensation of 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate yielding 6,7-dimethyl-8-lumazine" comment:mint|function:"Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The beta subunit catalyzes the condensation of 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate yielding 6,7-dimethyl-8-lumazine" figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tsKVhhME09SvfgJwuwa2/8qOsnY85962 rogid:tsKVhhME09SvfgJwuwa2/8qOsnY85962 intact-crc:5EFCAF5BA74C368F|rigid:7nQpl0pj5HhyD0UCSzqPptf+DHs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O07678 uniprotkb:O34754 intact:EBI-7696493|ensemblbacteria:AAD08114|intact:MINT-4076544 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 psi-mi:prma_helpy(display_long)|uniprotkb:prmA(gene name)|psi-mi:prmA(display_short)|uniprotkb:hsm(gene name synonym)|uniprotkb:HP_1068(locus name) psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317133|imex:IM-22256-25 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08114(transcript)|ensemblbacteria:HP_1068(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008276"(protein methyltransferase activity)|interpro:IPR004498(Ribosomal protein L11 methyltransferase)|interpro:IPR029063|mint:O07678|refseq:NP_207859.1|refseq:WP_000917395.1|dip:DIP-3670N|uniprotkb:O07678(identity) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Methylates ribosomal protein L11 comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+4M04wmHCL1eTqXYXYQpaU056Vw85962 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 intact-crc:587CDF0FC7B68B1D|rigid:fwbYWzbZn8UKvxBG5ltlJ7r51K4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O05731 uniprotkb:O26006 intact:EBI-7498850|intact:MINT-163231|ensemblbacteria:AAD07937 intact:EBI-9260077|ensemblbacteria:AAD08511 psi-mi:y889_helpy(display_long)|uniprotkb:HP_0889(locus name) psi-mi:o26006_helpy(display_long)|uniprotkb:HP_1471(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317115|imex:IM-22256-24 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O05731|refseq:NP_207682.1|refseq:WP_000921458.1|ensemblbacteria:AAD07937(transcript)|ensemblbacteria:HP_0889(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0022857"(transmembrane transporter activity)|go:"GO:0033214"(siderophore-dependent iron import into cell)|interpro:IPR000522(Bacterial transport system permease protein)|interpro:IPR037294|dip:DIP-3475N|uniprotkb:O05731(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_208262.1|ensemblbacteria:AAD08511(transcript)|ensemblbacteria:HP_1471(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O26006(identity) psi-mi:"MI:0469"(intact) function:Part of a binding-protein-dependent transport system for an iron chelatin; probably responsible for the translocation of the substrate across the membrane|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5xKhIpKbUORyMaz1VMFoiZcB4TI85962 rogid:kutCG3yhuSFassWodi2b+4pXCZA85962 intact-crc:CC5F5E4193EE9FDF|rigid:u7V4WBud6eMnNpYjK2AxAhSQJO8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O05731 uniprotkb:O24991 intact:EBI-7498850|intact:MINT-163231|ensemblbacteria:AAD07937 intact:EBI-7525732|intact:MINT-165883|ensemblbacteria:AAD07263 psi-mi:y889_helpy(display_long)|uniprotkb:HP_0889(locus name) psi-mi:lpxd_helpy(display_long)|uniprotkb:HP_0196(locus name)|uniprotkb:lpxD(gene name)|psi-mi:lpxD(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317097|imex:IM-22256-23 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O05731|refseq:NP_207682.1|refseq:WP_000921458.1|ensemblbacteria:AAD07937(transcript)|ensemblbacteria:HP_0889(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0022857"(transmembrane transporter activity)|go:"GO:0033214"(siderophore-dependent iron import into cell)|interpro:IPR000522(Bacterial transport system permease protein)|interpro:IPR037294|dip:DIP-3475N|uniprotkb:O05731(identity) mint:O24991|refseq:WP_000777041.1|refseq:NP_206995.1|ensemblbacteria:AAD07263(transcript)|ensemblbacteria:HP_0196(gene)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016410"(N-acyltransferase activity)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR007691(UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD)|interpro:IPR011004(Trimeric LpxA-like)|interpro:IPR020573|dip:DIP-3246N|uniprotkb:O24991(identity) psi-mi:"MI:0469"(intact) function:Part of a binding-protein-dependent transport system for an iron chelatin; probably responsible for the translocation of the substrate across the membrane|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5xKhIpKbUORyMaz1VMFoiZcB4TI85962 rogid:QasheDoo1gV2p/HLISvtoewJ1Fg85962 intact-crc:B7A9658430A52838|rigid:27jEZN/K32qjav0Jj2Lw2OOxQWo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:G5EB02 uniprotkb:G5EB02 intact:EBI-9260044|ensemblbacteria:AAD07592 intact:EBI-9260044|ensemblbacteria:AAD07592 psi-mi:g5eb02_helpy(display_long)|uniprotkb:HP_0525(locus name) psi-mi:g5eb02_helpy(display_long)|uniprotkb:HP_0525(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317079|imex:IM-22256-22 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000133885.1|interpro:IPR001482(Type II secretion system protein E)|interpro:IPR014155(P-type DNA transfer ATPase VirB11)|interpro:IPR027417|refseq:NP_207321.1|ensemblbacteria:AAD07592(transcript)|ensemblbacteria:HP_0525(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0043684"(type IV secretion system complex)|go:"GO:0044097"(secretion by the type IV secretion system)|uniprotkb:G5EB02(identity) refseq:WP_000133885.1|interpro:IPR001482(Type II secretion system protein E)|interpro:IPR014155(P-type DNA transfer ATPase VirB11)|interpro:IPR027417|refseq:NP_207321.1|ensemblbacteria:AAD07592(transcript)|ensemblbacteria:HP_0525(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0043684"(type IV secretion system complex)|go:"GO:0044097"(secretion by the type IV secretion system)|uniprotkb:G5EB02(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:F7O1OpimZr6rFBAaCfgOZ0ruOMo85962 rogid:F7O1OpimZr6rFBAaCfgOZ0ruOMo85962 intact-crc:BDD11F5019C378FF|rigid:MqYmBsIm5SFAoe91MQs4+jIeu6I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24864 uniprotkb:O25321 intact:EBI-7735710|ensemblbacteria:AAD07087|intact:MINT-164782 intact:EBI-7577202|intact:MINT-187505|ensemblbacteria:AAD07662 psi-mi:chev1_helpy(display_long)|uniprotkb:cheV1(gene name)|psi-mi:cheV1(display_short)|uniprotkb:HP_0019(locus name) psi-mi:o25321_helpy(display_long)|uniprotkb:HP_0599(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317259|imex:IM-22256-32 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24864|ensemblbacteria:AAD07087(transcript)|ensemblbacteria:HP_0019(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|interpro:IPR036061|refseq:WP_000785454.1|refseq:NP_206821.1|dip:DIP-3650N|uniprotkb:O24864(identity) refseq:WP_000467802.1|mint:O25321|refseq:NP_207394.1|ensemblbacteria:AAD07662(transcript)|ensemblbacteria:HP_0599(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016020"(membrane)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR025991|dip:DIP-3485N|uniprotkb:O25321(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:XXysqCSx1y7ktkhCQjt+1E1qvwU85962 rogid:YXk7N41WMjfNAWCxz3+ICouzcqo85962 intact-crc:0435A26F6F042481|rigid:zzrzDMDBhOY/hXTFpXPx9FlcYH4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24853 uniprotkb:O24861 intact:EBI-7635518|ensemblbacteria:AAD07074|intact:MINT-164319 intact:EBI-7513154|intact:MINT-159590|ensemblbacteria:AAD07092 psi-mi:nusb_helpy(display_long)|uniprotkb:nusB(gene name)|psi-mi:nusB(display_short)|uniprotkb:Antitermination factor NusB(gene name synonym)|uniprotkb:HP_0001(locus name) psi-mi:o24861_helpy(display_long)|uniprotkb:HP_0016(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317223|imex:IM-22256-30 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000235740.1|ensemblbacteria:AAD07074(transcript)|ensemblbacteria:HP_0001(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0031564"(transcription antitermination)|interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR011605(NusB antitermination factor)|interpro:IPR035926|mint:O24853|refseq:NP_206803.1|dip:DIP-3047N|uniprotkb:O24853(identity) refseq:WP_000584956.1|mint:O24861|refseq:NP_206818.1|ensemblbacteria:HP_0016(gene)|go:"GO:0016021"(integral component of membrane)|ensemblbacteria:AAD07092(transcript)|dip:DIP-3075N|uniprotkb:O24861(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Involved in the transcription termination process comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:PQhiYWqCl3QjodzOzIzpwmyiFvs85962 rogid:t1cqv9/BGopojIEd5lhFc3oePOg85962 intact-crc:ED560503943CE8FA|rigid:e8kbWwNTZhGMbBb6MOqTPyowV4k false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24856 uniprotkb:Q9ZN32 intact:EBI-9260140|ensemblbacteria:AAD07084 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o24856_helpy(display_long)|uniprotkb:HP_0007(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317205|imex:IM-22256-29 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07084(transcript)|ensemblbacteria:HP_0007(gene)|uniprotkb:O24856(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:CR7IidW486TFaI+ubrE3l1xDlVU85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:7BE0EC8341F4B0DB|rigid:brOM4chMAy4xdfIk3l2sZyeYh/A false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55977 uniprotkb:O24856 intact:EBI-7723667|ensemblbacteria:AAD08555|intact:MINT-4077929 intact:EBI-9260140|ensemblbacteria:AAD07084 psi-mi:nusa_helpy(display_long)|uniprotkb:nusA(gene name)|psi-mi:nusA(display_short)|uniprotkb:HP_1514(locus name) psi-mi:o24856_helpy(display_long)|uniprotkb:HP_0007(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317187|imex:IM-22256-28 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55977|ensemblbacteria:AAD08555(transcript)|ensemblbacteria:HP_1514(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0031564"(transcription antitermination)|interpro:IPR003029(S1, RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR010213(Transcription termination factor NusA)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013735(Transcription factor NusA, N-terminal)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR022967|interpro:IPR025249|interpro:IPR030842|interpro:IPR036555|refseq:WP_000411646.1|refseq:NP_208305.1|dip:DIP-3664N|uniprotkb:P55977(identity) ensemblbacteria:AAD07084(transcript)|ensemblbacteria:HP_0007(gene)|uniprotkb:O24856(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RTwa+hy08+YPTH/PON5T0ltkljM85962 rogid:CR7IidW486TFaI+ubrE3l1xDlVU85962 intact-crc:FC3A3B0819B8CDC8|rigid:ZONZBj1q59mA/85wiCOjpJWQbOE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24861 uniprotkb:O25283 intact:EBI-7513154|intact:MINT-159590|ensemblbacteria:AAD07092 intact:EBI-9260195|ensemblbacteria:AAD07624 psi-mi:o24861_helpy(display_long)|uniprotkb:HP_0016(locus name) psi-mi:acca_helpy(display_long)|uniprotkb:accA(gene name)|psi-mi:accA(display_short)|uniprotkb:HP_0557(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317241|imex:IM-22256-31 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000584956.1|mint:O24861|refseq:NP_206818.1|ensemblbacteria:HP_0016(gene)|go:"GO:0016021"(integral component of membrane)|ensemblbacteria:AAD07092(transcript)|dip:DIP-3075N|uniprotkb:O24861(identity) refseq:WP_000312027.1|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|refseq:NP_207352.1|interpro:IPR029045|ensemblbacteria:AAD07624(transcript)|ensemblbacteria:HP_0557(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016743"(carboxyl- or carbamoyltransferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|uniprotkb:O25283(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:t1cqv9/BGopojIEd5lhFc3oePOg85962 rogid:dtK9OQ8rBpkfINTjAK9rsVkEh5s85962 intact-crc:0556491CACECC2C6|rigid:INhoELLy69ky76QOjw3mvtf6LM4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25990 uniprotkb:O24866 intact:EBI-528082|ensemblbacteria:AAD08496 intact:EBI-9260226|uniprotkb:Q1PDD4|ensemblbacteria:AAD07094 psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:lpxe_helpy(display_long)|uniprotkb:lpxE(gene name)|psi-mi:lpxE(display_short)|uniprotkb:C694_00100(locus name)|uniprotkb:HP_0021(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317295|imex:IM-22256-34 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) interpro:IPR000326(Phosphatidic acid phosphatase type 2/haloperoxidase)|refseq:NP_206823.1|refseq:WP_000713906.1|interpro:IPR036938|ensemblbacteria:AAD07094(transcript)|ensemblbacteria:HP_0021(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009103"(lipopolysaccharide biosynthetic process)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016791"(phosphatase activity)|go:"GO:0046677"(response to antibiotic)|uniprotkb:O24866(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 rogid:cxFyTOJtu/Z1pwJLZVAhG0udpcQ85962 intact-crc:EF2B8045DC1D89DF|rigid:y1y12jkUfzqKgKItbfNrL/JTNHw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24991 uniprotkb:O24866 intact:EBI-7525732|intact:MINT-165883|ensemblbacteria:AAD07263 intact:EBI-9260226|uniprotkb:Q1PDD4|ensemblbacteria:AAD07094 psi-mi:lpxd_helpy(display_long)|uniprotkb:HP_0196(locus name)|uniprotkb:lpxD(gene name)|psi-mi:lpxD(display_short) psi-mi:lpxe_helpy(display_long)|uniprotkb:lpxE(gene name)|psi-mi:lpxE(display_short)|uniprotkb:C694_00100(locus name)|uniprotkb:HP_0021(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317277|imex:IM-22256-33 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24991|refseq:WP_000777041.1|refseq:NP_206995.1|ensemblbacteria:AAD07263(transcript)|ensemblbacteria:HP_0196(gene)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016410"(N-acyltransferase activity)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR007691(UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD)|interpro:IPR011004(Trimeric LpxA-like)|interpro:IPR020573|dip:DIP-3246N|uniprotkb:O24991(identity) interpro:IPR000326(Phosphatidic acid phosphatase type 2/haloperoxidase)|refseq:NP_206823.1|refseq:WP_000713906.1|interpro:IPR036938|ensemblbacteria:AAD07094(transcript)|ensemblbacteria:HP_0021(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009103"(lipopolysaccharide biosynthetic process)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016791"(phosphatase activity)|go:"GO:0046677"(response to antibiotic)|uniprotkb:O24866(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QasheDoo1gV2p/HLISvtoewJ1Fg85962 rogid:cxFyTOJtu/Z1pwJLZVAhG0udpcQ85962 intact-crc:F2DA356348B315F1|rigid:8CnpuNv/Ad14idMUc6/zs1TFYYI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24877 uniprotkb:O25423 intact:EBI-7507145|intact:MINT-4059430|ensemblbacteria:AAD07109 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o24877_helpy(display_long)|uniprotkb:HP_0036(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317331|imex:IM-22256-36 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24877|refseq:WP_000468475.1|refseq:NP_206838.1|interpro:IPR001478(PDZ/DHR/GLGF)|ensemblbacteria:AAD07109(transcript)|ensemblbacteria:HP_0036(gene)|interpro:IPR036034|uniprotkb:O24877(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LbR0UzXORN8rWdUVHGjzcUZyXM885962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:107E0DB701933B55|rigid:1zOi03tAJOif3h9N33WbJC9ubyI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24875 uniprotkb:P56066 intact:EBI-7504332|intact:MINT-178062|ensemblbacteria:AAD07102 intact:EBI-7515733|intact:MINT-183175|ensemblbacteria:AAD07101 psi-mi:o24875_helpy(display_long)|uniprotkb:HP_0033(locus name) psi-mi:clps_helpy(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:HP_0032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317313|imex:IM-22256-35 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24875|refseq:WP_001051514.1|refseq:NP_206835.1|ensemblbacteria:AAD07102(transcript)|ensemblbacteria:HP_0033(gene)|go:"GO:0005524"(ATP binding)|interpro:IPR036628|interpro:IPR041546|go:"GO:0005737"(cytoplasm)|go:"GO:0008233"(peptidase activity)|go:"GO:0034605"(cellular response to heat)|interpro:IPR001270(Chaperonin clpA/B)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR018368|interpro:IPR019489|interpro:IPR027417|interpro:IPR028299|dip:DIP-3404N|uniprotkb:O24875(identity) mint:P56066|refseq:WP_000784920.1|refseq:NP_206834.1|ensemblbacteria:AAD07101(transcript)|ensemblbacteria:HP_0032(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051087"(chaperone binding)|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|dip:DIP-3107N|uniprotkb:P56066(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Involved in the modulation of the specificity of the clpAP-mediated ATP-dependent protein degradation figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:CUS4bWeMBuerbiFZ/kd0eJ3yGMA85962 rogid:24XzmUMqcQd9MuwsrPr67hcPl5s85962 intact-crc:19CBC4EBD2A046D6|rigid:hmPpOPnZfPH8myl0T4bCSdnHNdw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25327 uniprotkb:O24914 intact:EBI-7500625|intact:MINT-176203|ensemblbacteria:AAD07670 intact:EBI-7500888|intact:MINT-171024|ensemblbacteria:AAD07159 psi-mi:o25327_helpy(display_long)|uniprotkb:HP_0606(locus name) psi-mi:o24914_helpy(display_long)|uniprotkb:HP_0087(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317421|imex:IM-22256-41 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25327|refseq:WP_000619658.1|refseq:NP_207401.1|ensemblbacteria:AAD07670(transcript)|ensemblbacteria:HP_0606(gene)|go:"GO:0015562"(efflux transmembrane transporter activity)|go:"GO:1990281"(efflux pump complex)|interpro:IPR006143(Secretion protein HlyD)|interpro:IPR032317|dip:DIP-3758N|uniprotkb:O25327(identity) mint:O24914|refseq:WP_001268661.1|refseq:NP_206887.1|ensemblbacteria:AAD07159(transcript)|ensemblbacteria:HP_0087(gene)|interpro:IPR000064(NLP/P60)|interpro:IPR025606|interpro:IPR026864|interpro:IPR027017|interpro:IPR038765|interpro:IPR039439|dip:DIP-3757N|uniprotkb:O24914(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:e20zPdx7G5QVr7EpUBvIjJ2K/dw85962 rogid:wIK4OKpuahhqLmHoxtMJo+RjOqs85962 intact-crc:959957B5FBF2165E|rigid:XT9lsqZpmAd9JJ4ds1U8vkt/kk0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25429 uniprotkb:O24881 intact:EBI-9260328|ensemblbacteria:AAD07788 intact:EBI-9260295|ensemblbacteria:AAD07120 psi-mi:o25429_helpy(display_long)|uniprotkb:HP_0729(locus name) psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317385|imex:IM-22256-39 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207523.1|refseq:WP_001016095.1|ensemblbacteria:AAD07788(transcript)|ensemblbacteria:HP_0729(gene)|uniprotkb:O25429(identity) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ZparGQQ4P9Qm0lfFzKMJ0WWzPsM85962 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 intact-crc:E53A5C6B6DAB3E15|rigid:uFggvZuds8xFS7rRzf6vPdnJLQ8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25356 uniprotkb:O24881 intact:EBI-7587122|intact:MINT-186968|ensemblbacteria:AAD07701 intact:EBI-9260295|ensemblbacteria:AAD07120 psi-mi:quec_helpy(display_long)|uniprotkb:7-cyano-7-carbaguanine synthase(gene name synonym)|uniprotkb:"PreQ(0) synthase"(gene name synonym)|uniprotkb:Queuosine biosynthesis protein QueC(gene name synonym)|uniprotkb:queC(gene name)|psi-mi:queC(display_short)|uniprotkb:HP_0639(locus name) psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317367|imex:IM-22256-38 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000435648.1|mint:O25356|refseq:NP_207433.1|ensemblbacteria:AAD07701(transcript)|ensemblbacteria:HP_0639(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0016879"(ligase activity, forming carbon-nitrogen bonds)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR018317|dip:DIP-3566N|uniprotkb:O25356(identity) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d/pwh5KxabOdjz5gbirFgcUmD0A85962 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 intact-crc:BFC61C271318E14C|rigid:6r+iql70dSEXmH3ubeAeN8oYV+8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25094 uniprotkb:O24881 intact:EBI-7584994|intact:MINT-171400|ensemblbacteria:AAD07394 intact:EBI-9260295|ensemblbacteria:AAD07120 psi-mi:pseh_helpy(display_long)|uniprotkb:pseH(gene name)|psi-mi:pseH(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein H(gene name synonym)|uniprotkb:HP_0327(locus name) psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317349|imex:IM-22256-37 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25094|refseq:WP_000742697.1|refseq:NP_207125.1|ensemblbacteria:AAD07394(transcript)|ensemblbacteria:HP_0327(gene)|go:"GO:0008080"(N-acetyltransferase activity)|interpro:IPR000182(GCN5-related N-acetyltransferase)|interpro:IPR016181(Acyl-CoA N-acyltransferase)|interpro:IPR020036|rcsb pdb:4RI1|dip:DIP-3555N|uniprotkb:O25094(identity) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uDBKnnI5LujCSAw9Z5WaulboR8Y85962 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 intact-crc:D552DDC8AF1845CE|rigid:HgOWfkZo0Xluve3KJ0HhNvPIQeE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25649 uniprotkb:O24911 intact:EBI-9260700|ensemblbacteria:AAD08050 intact:EBI-9260661|ensemblbacteria:AAD07152 psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:o24911_helpy(display_long)|uniprotkb:HP_0082(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317403|imex:IM-22256-40 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) refseq:WP_000843374.1|rcsb pdb:5WBF|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:NP_206882.1|ensemblbacteria:AAD07152(transcript)|ensemblbacteria:HP_0082(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24911(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 rogid:xJRAsgOrtjWwJE34gRFc2OSzMVY85962 intact-crc:FB8E402A6661010B|rigid:/alZ8g5/7oX5K9ZOehPYk5qlD1k false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24918 uniprotkb:O24918 intact:EBI-9260804|ensemblbacteria:AAD07163 intact:EBI-9260804|ensemblbacteria:AAD07163 psi-mi:o24918_helpy(display_long)|uniprotkb:HP_0092(locus name) psi-mi:o24918_helpy(display_long)|uniprotkb:HP_0092(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317511|imex:IM-22256-46 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000233875.1|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_206892.1|interpro:IPR029063|ensemblbacteria:AAD07163(transcript)|ensemblbacteria:HP_0092(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|uniprotkb:O24918(identity) refseq:WP_000233875.1|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_206892.1|interpro:IPR029063|ensemblbacteria:AAD07163(transcript)|ensemblbacteria:HP_0092(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|uniprotkb:O24918(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wwha5GNvSIX5Q97QjPA0nAthydM85962 rogid:Wwha5GNvSIX5Q97QjPA0nAthydM85962 intact-crc:E33E509E2D69512B|rigid:eOkXbuZFQV4PzBiyryERJgKaVe8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O24917 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9260786|ensemblbacteria:AAD07162 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o24917_helpy(display_long)|uniprotkb:HP_0091(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317493|imex:IM-22256-45 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000788527.1|interpro:IPR038365|interpro:IPR007637(Restriction endonuclease, type II, DpmII)|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR021191|refseq:NP_206891.1|ensemblbacteria:AAD07162(transcript)|ensemblbacteria:HP_0091(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0009036"(type II site-specific deoxyribonuclease activity)|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:O24917(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:VVWLmSvNwhsC0G5pTvqDsTcxcqU85962 intact-crc:083A6270FDA3CD38|rigid:bPaehpmOGoHHFMoz6l5pAswn+gI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25186 uniprotkb:O24915 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9260751|uniprotkb:O32636|ensemblbacteria:AAD07157 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:mqmtn_helpy(display_long)|uniprotkb:mtnN(gene name)|psi-mi:mtnN(display_short)|uniprotkb:5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase(gene name synonym)|uniprotkb:6-amino-6-deoxyfutalosine N-ribosylhydrolase(gene name synonym)|uniprotkb:mtn(gene name synonym)|uniprotkb:HP_0089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317475|imex:IM-22256-44 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) refseq:WP_000250146.1|interpro:IPR000845(Nucleoside phosphorylase)|interpro:IPR010049(MTA/SAH nucleosidase)|rcsb pdb:4BMX|rcsb pdb:4BMY|rcsb pdb:4BMZ|rcsb pdb:4BN0|refseq:NP_206889.1|interpro:IPR035994|ensemblbacteria:AAD07157(transcript)|ensemblbacteria:HP_0089(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008782"(adenosylhomocysteine nucleosidase activity)|go:"GO:0008930"(methylthioadenosine nucleosidase activity)|go:"GO:0009164"(nucleoside catabolic process)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0019284"(L-methionine salvage from S-adenosylmethionine)|go:"GO:0019509"(L-methionine salvage from methylthioadenosine)|go:"GO:0102246"(6-amino-6-deoxyfutalosine hydrolase activity)|uniprotkb:O24915(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:MkYwlyrHKG9HLKdIulLNBcQVeQw85962 intact-crc:DCF696DF018CE00E|rigid:mqLeKpvGbMMi3wVpRlroJG6/f2s false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O24915 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9260751|uniprotkb:O32636|ensemblbacteria:AAD07157 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:mqmtn_helpy(display_long)|uniprotkb:mtnN(gene name)|psi-mi:mtnN(display_short)|uniprotkb:5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase(gene name synonym)|uniprotkb:6-amino-6-deoxyfutalosine N-ribosylhydrolase(gene name synonym)|uniprotkb:mtn(gene name synonym)|uniprotkb:HP_0089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317457|imex:IM-22256-43 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_000250146.1|interpro:IPR000845(Nucleoside phosphorylase)|interpro:IPR010049(MTA/SAH nucleosidase)|rcsb pdb:4BMX|rcsb pdb:4BMY|rcsb pdb:4BMZ|rcsb pdb:4BN0|refseq:NP_206889.1|interpro:IPR035994|ensemblbacteria:AAD07157(transcript)|ensemblbacteria:HP_0089(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008782"(adenosylhomocysteine nucleosidase activity)|go:"GO:0008930"(methylthioadenosine nucleosidase activity)|go:"GO:0009164"(nucleoside catabolic process)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0019284"(L-methionine salvage from S-adenosylmethionine)|go:"GO:0019509"(L-methionine salvage from methylthioadenosine)|go:"GO:0102246"(6-amino-6-deoxyfutalosine hydrolase activity)|uniprotkb:O24915(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:MkYwlyrHKG9HLKdIulLNBcQVeQw85962 intact-crc:92DB721D85ECC5CD|rigid:vadOc+EXqr08MLLWWE+FN1D8A94 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24914 uniprotkb:O25872 intact:EBI-7500888|intact:MINT-171024|ensemblbacteria:AAD07159 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o24914_helpy(display_long)|uniprotkb:HP_0087(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317439|imex:IM-22256-42 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24914|refseq:WP_001268661.1|refseq:NP_206887.1|ensemblbacteria:AAD07159(transcript)|ensemblbacteria:HP_0087(gene)|interpro:IPR000064(NLP/P60)|interpro:IPR025606|interpro:IPR026864|interpro:IPR027017|interpro:IPR038765|interpro:IPR039439|dip:DIP-3757N|uniprotkb:O24914(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wIK4OKpuahhqLmHoxtMJo+RjOqs85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:7CB138CF2DC08C75|rigid:SFgieN5xsgE5Air5JLNQtj1ttwE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25513 uniprotkb:O24921 intact:EBI-9260843|ensemblbacteria:AAD07896 intact:EBI-9260837|ensemblbacteria:AAD07170 psi-mi:o25513_helpy(display_long)|uniprotkb:HP_0842(locus name) psi-mi:o24921_helpy(display_long)|uniprotkb:HP_0095(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317547|imex:IM-22256-48 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000888450.1|refseq:NP_207635.1|ensemblbacteria:AAD07896(transcript)|ensemblbacteria:HP_0842(gene)|uniprotkb:O25513(identity) refseq:WP_001125803.1|refseq:NP_206895.1|ensemblbacteria:AAD07170(transcript)|ensemblbacteria:HP_0095(gene)|uniprotkb:O24921(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+KQssvSMk8xQbfSSdSgOV+W+VeY85962 rogid:u3bQBXJwbeu7kteqTqCQ4QqbviM85962 intact-crc:54CEAF67BA0A3CE4|rigid:w5YlmhpVs4kLeXi6RlAlooXYLlk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24922 uniprotkb:O24922 intact:EBI-7497103|intact:MINT-183199|ensemblbacteria:AAD07165 intact:EBI-7497103|intact:MINT-183199|ensemblbacteria:AAD07165 psi-mi:o24922_helpy(display_long)|uniprotkb:HP_0096(locus name) psi-mi:o24922_helpy(display_long)|uniprotkb:HP_0096(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317565|imex:IM-22256-49 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24922|refseq:NP_206896.1|ensemblbacteria:AAD07165(transcript)|ensemblbacteria:HP_0096(gene)|go:"GO:0016616"(oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)|go:"GO:0051287"(NAD binding)|interpro:IPR006139(D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region)|interpro:IPR006140(D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding)|interpro:IPR029753|interpro:IPR036291|refseq:WP_000846779.1|dip:DIP-3384N|uniprotkb:O24922(identity) mint:O24922|refseq:NP_206896.1|ensemblbacteria:AAD07165(transcript)|ensemblbacteria:HP_0096(gene)|go:"GO:0016616"(oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)|go:"GO:0051287"(NAD binding)|interpro:IPR006139(D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region)|interpro:IPR006140(D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding)|interpro:IPR029753|interpro:IPR036291|refseq:WP_000846779.1|dip:DIP-3384N|uniprotkb:O24922(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Q8Ey9iq53vPZKssGSM7RFFmlcAQ85962 rogid:Q8Ey9iq53vPZKssGSM7RFFmlcAQ85962 intact-crc:51C328C1D6552458|rigid:a6qCSrS4vov+f3JqIYFxxx5d2nc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24943 uniprotkb:O25423 intact:EBI-9260876|ensemblbacteria:AAD07198 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o24943_helpy(display_long)|uniprotkb:HP_0129(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317583|imex:IM-22256-50 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038310|refseq:WP_000731991.1|interpro:IPR009488(Protein of unknown function DUF1104)|refseq:NP_206929.1|ensemblbacteria:AAD07198(transcript)|ensemblbacteria:HP_0129(gene)|uniprotkb:O24943(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YH8hSCLRQPFmw/PXnvG+lvsz05Q85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:5F51766F48E8531C|rigid:tKYCnp0jzmb983nXDW574neHjII false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24952 uniprotkb:O26083 intact:EBI-9260891|ensemblbacteria:AAD07208 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:o24952_helpy(display_long)|uniprotkb:HP_0140(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317601|imex:IM-22256-51 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000398080.1|interpro:IPR003804(L-lactate permease)|refseq:NP_206940.1|ensemblbacteria:AAD07208(transcript)|ensemblbacteria:HP_0140(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015129"(lactate transmembrane transporter activity)|go:"GO:0015295"("solute:proton symporter activity")|uniprotkb:O24952(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:IN8zJ0UaIy06qBc1AxvFb/ppWiU85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:4B83CB76D25C5A58|rigid:z1E+V7Zhl1nP1DC+42DHdTKcQh8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25606 uniprotkb:O24918 intact:EBI-9260819|ensemblbacteria:AAD07996 intact:EBI-9260804|ensemblbacteria:AAD07163 psi-mi:o25606_helpy(display_long)|uniprotkb:HP_0952(locus name) psi-mi:o24918_helpy(display_long)|uniprotkb:HP_0092(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317529|imex:IM-22256-47 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000669256.1|interpro:IPR008136(CinA, C-terminal)|refseq:NP_207744.1|interpro:IPR036653|ensemblbacteria:AAD07996(transcript)|ensemblbacteria:HP_0952(gene)|uniprotkb:O25606(identity) refseq:WP_000233875.1|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_206892.1|interpro:IPR029063|ensemblbacteria:AAD07163(transcript)|ensemblbacteria:HP_0092(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|uniprotkb:O24918(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:s8fk+afTe93cG0B77Mk3AdeOLvk85962 rogid:Wwha5GNvSIX5Q97QjPA0nAthydM85962 intact-crc:73F5B446FDFAE25A|rigid:dLp+61i7upLTgXkuMBgW9Mhk4WA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24954 uniprotkb:O25479 intact:EBI-9260909|ensemblbacteria:AAD07210 intact:EBI-9260912|ensemblbacteria:AAD07838 psi-mi:o24954_helpy(display_long)|uniprotkb:HP_0142(locus name) psi-mi:o25479_helpy(display_long)|uniprotkb:HP_0790(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317619|imex:IM-22256-52 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR044298|refseq:WP_010875444.1|interpro:IPR000445(Helix-hairpin-helix motif)|interpro:IPR003265(HhH-GPD)|interpro:IPR011257(DNA glycosylase)|interpro:IPR023170|refseq:NP_206942.1|ensemblbacteria:AAD07210(transcript)|ensemblbacteria:HP_0142(gene)|go:"GO:0000701"(purine-specific mismatch base pair DNA N-glycosylase activity)|go:"GO:0006284"(base-excision repair)|go:"GO:0006298"(mismatch repair)|go:"GO:0032357"(oxidized purine DNA binding)|go:"GO:0034039"(8-oxo-7,8-dihydroguanine DNA N-glycosylase activity)|go:"GO:0035485"(adenine/guanine mispair binding)|uniprotkb:O24954(identity) refseq:WP_000548846.1|interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_207583.1|ensemblbacteria:AAD07838(transcript)|ensemblbacteria:HP_0790(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O25479(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:P4HK7O1sIhpYJdQXzBZTKj+NJgo85962 rogid:3vMD4PEETybdKkrbPWu3T1Std2U85962 intact-crc:B10F978F36567EA2|rigid:FwM5Dfa3tuoiACPA/oy/y7I402E false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24962 uniprotkb:O25990 intact:EBI-9260933|ensemblbacteria:AAD07217 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o24962_helpy(display_long)|uniprotkb:HP_0151(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317637|imex:IM-22256-53 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010875446.1|refseq:NP_206950.1|ensemblbacteria:AAD07217(transcript)|ensemblbacteria:HP_0151(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24962(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Yd99GJpxXyNfpDKtoIXGcQu3IH085962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:5B544159C6DC25C5|rigid:C7nwAn5W6wK1hgLWWR8uIvsAf8s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24965 uniprotkb:O25423 intact:EBI-7495735|intact:MINT-171560|ensemblbacteria:AAD07227 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o24965_helpy(display_long)|uniprotkb:HP_0156(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317655|imex:IM-22256-54 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24965|refseq:NP_206955.1|ensemblbacteria:AAD07227(transcript)|ensemblbacteria:HP_0156(gene)|interpro:IPR021731|refseq:WP_000260967.1|dip:DIP-3147N|uniprotkb:O24965(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mQrz63ZUqUcZtoZ3CJTSZyklIIE85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:B618B24FA04C73F4|rigid:w/TRbulOAtWgwVa7SfbKb7Bk51A false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24973 uniprotkb:O24972 intact:EBI-9261041|ensemblbacteria:AAD07234 intact:EBI-9260411|uniprotkb:O24971|ensemblbacteria:AAD07233|ensemblbacteria:AAD07239 psi-mi:arsr_helpy(display_long)|uniprotkb:arsR(gene name)|psi-mi:arsR(display_short)|uniprotkb:HP_0166(locus name) psi-mi:arss_helpy(display_long)|uniprotkb:arsS(gene name)|psi-mi:arsS(display_short)|uniprotkb:HP_0164/HP_0165(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317745|imex:IM-22256-59 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000573710.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|refseq:NP_206965.1|interpro:IPR036388|interpro:IPR039420|ensemblbacteria:AAD07234(transcript)|ensemblbacteria:HP_0166(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0001217"(DNA-binding transcription repressor activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|uniprotkb:O24973(identity) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR036097|interpro:IPR036890|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|ensemblbacteria:AAD07233(transcript)|ensemblbacteria:AAD07239(transcript)|ensemblbacteria:HP_0164(gene)|ensemblbacteria:HP_0165(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24971(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2020/01/08 rogid:tD8+rUIsctQLNplR9mZyZVmqRZI85962 rogid:iGm8PnU59Azwe5NrINkshU2pVEA85962 intact-crc:3D049E6968283068|rigid:hv0Mfh3SwjhALlHKAZk/ak+KIQE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24970 uniprotkb:P56044 intact:EBI-7605642|intact:MINT-183344|ensemblbacteria:AAD07231 intact:EBI-9261001|ensemblbacteria:AAD08191 psi-mi:y162_helpy(display_long)|uniprotkb:HP_0162(locus name) psi-mi:rl19_helpy(display_long)|uniprotkb:rplS(gene name)|psi-mi:rplS(display_short)|uniprotkb:HP_1147(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317709|imex:IM-22256-57 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000532084.1|mint:O24970|refseq:NP_206961.1|ensemblbacteria:AAD07231(transcript)|ensemblbacteria:HP_0162(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|rcsb pdb:1MHF|rcsb pdb:1MW7|dip:DIP-3628N|uniprotkb:O24970(identity) refseq:WP_000797699.1|interpro:IPR001857(Ribosomal protein L19)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR018257|refseq:NP_207938.1|interpro:IPR038657|ensemblbacteria:AAD08191(transcript)|ensemblbacteria:HP_1147(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56044(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LUGGL2bkvaETPDkdhcm+8A+3STQ85962 rogid:nSldGvsSYOnzUDqkFrp6p2IdgB485962 intact-crc:DF81537229430A49|rigid:hZj2ylkQIemOsTbPtxd2Penz2P8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24970 uniprotkb:P55984 intact:EBI-7605642|intact:MINT-183344|ensemblbacteria:AAD07231 intact:EBI-9260982|ensemblbacteria:AAD08263 psi-mi:y162_helpy(display_long)|uniprotkb:HP_0162(locus name) psi-mi:ispt_helpy(display_long)|uniprotkb:uppS(gene name)|psi-mi:uppS(display_short)|uniprotkb:HP_1221(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317691|imex:IM-22256-56 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000532084.1|mint:O24970|refseq:NP_206961.1|ensemblbacteria:AAD07231(transcript)|ensemblbacteria:HP_0162(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|rcsb pdb:1MHF|rcsb pdb:1MW7|dip:DIP-3628N|uniprotkb:O24970(identity) refseq:WP_000370674.1|interpro:IPR001441(Di-trans-poly-cis-decaprenylcistransferase)|interpro:IPR018520|rcsb pdb:2D2R|rcsb pdb:2DTN|refseq:NP_208013.1|interpro:IPR036424|ensemblbacteria:AAD08263(transcript)|ensemblbacteria:HP_1221(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0002094"(polyprenyltransferase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008834"(di-trans,poly-cis-decaprenylcistransferase activity)|go:"GO:0016094"(polyprenol biosynthetic process)|go:"GO:0030145"(manganese ion binding)|uniprotkb:P55984(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LUGGL2bkvaETPDkdhcm+8A+3STQ85962 rogid:6ysxKJJK+I3uVC22ihjbhYZ6yew85962 intact-crc:4EEAA190B5FB7C23|rigid:TtrpzegE07TaDyV0sDJHE2qokgY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24965 uniprotkb:P56081 intact:EBI-7495735|intact:MINT-171560|ensemblbacteria:AAD07227 intact:EBI-9260966|ensemblbacteria:AAD07351 psi-mi:o24965_helpy(display_long)|uniprotkb:HP_0156(locus name) psi-mi:arob_helpy(display_long)|uniprotkb:aroB(gene name)|psi-mi:aroB(display_short)|uniprotkb:HP_0283(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317673|imex:IM-22256-55 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24965|refseq:NP_206955.1|ensemblbacteria:AAD07227(transcript)|ensemblbacteria:HP_0156(gene)|interpro:IPR021731|refseq:WP_000260967.1|dip:DIP-3147N|uniprotkb:O24965(identity) interpro:IPR030960|interpro:IPR030963|refseq:WP_001156090.1|interpro:IPR016037(3-dehydroquinate synthase AroB, subgroup)|rcsb pdb:3CLH|refseq:NP_207081.1|ensemblbacteria:AAD07351(transcript)|ensemblbacteria:HP_0283(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0046872"(metal ion binding)|uniprotkb:P56081(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mQrz63ZUqUcZtoZ3CJTSZyklIIE85962 rogid:T6Jo6HqGFq4i+3QFsuhkk/Ske9g85962 intact-crc:795152E2E111B886|rigid:joNa1byZ1YLBsmfim/4iwaHSbsA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25756 uniprotkb:O24972 intact:EBI-9261023|ensemblbacteria:AAD08177 intact:EBI-9260411|uniprotkb:O24971|ensemblbacteria:AAD07233|ensemblbacteria:AAD07239 psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:arss_helpy(display_long)|uniprotkb:arsS(gene name)|psi-mi:arsS(display_short)|uniprotkb:HP_0164/HP_0165(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317727|imex:IM-22256-58 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR036097|interpro:IPR036890|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|ensemblbacteria:AAD07233(transcript)|ensemblbacteria:AAD07239(transcript)|ensemblbacteria:HP_0164(gene)|ensemblbacteria:HP_0165(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24971(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2020/01/08 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 rogid:iGm8PnU59Azwe5NrINkshU2pVEA85962 intact-crc:CD8030D1623EF587|rigid:tXEil1vQti3DccrwPJbEvaWW5is false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25707 uniprotkb:O24973 intact:EBI-7607688|intact:MINT-162871|ensemblbacteria:AAD08122 intact:EBI-9261041|ensemblbacteria:AAD07234 psi-mi:o25707_helpy(display_long)|uniprotkb:HP_1074(locus name) psi-mi:arsr_helpy(display_long)|uniprotkb:arsR(gene name)|psi-mi:arsR(display_short)|uniprotkb:HP_0166(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317781|imex:IM-22256-61 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862769.1|mint:O25707|refseq:NP_207865.1|ensemblbacteria:AAD08122(transcript)|ensemblbacteria:HP_1074(gene)|dip:DIP-3641N|uniprotkb:O25707(identity) refseq:WP_000573710.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|refseq:NP_206965.1|interpro:IPR036388|interpro:IPR039420|ensemblbacteria:AAD07234(transcript)|ensemblbacteria:HP_0166(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0001217"(DNA-binding transcription repressor activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|uniprotkb:O24973(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:76b3TtdjvRQbevyc2nRzlXtx25Q85962 rogid:tD8+rUIsctQLNplR9mZyZVmqRZI85962 intact-crc:4CE638C64C5E6A6B|rigid:NhX+sfW1XfndYRYEWRuAhRa6wrY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24974 uniprotkb:O24975 intact:EBI-7527947|intact:MINT-179928|ensemblbacteria:AAD07240 intact:EBI-9261086|ensemblbacteria:AAD07241 psi-mi:o24974_helpy(display_long)|uniprotkb:HP_0167(locus name) psi-mi:o24975_helpy(display_long)|uniprotkb:HP_0168(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317799|imex:IM-22256-62 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24974|refseq:WP_000918975.1|refseq:NP_206966.1|ensemblbacteria:AAD07240(transcript)|ensemblbacteria:HP_0167(gene)|dip:DIP-3258N|uniprotkb:O24974(identity) refseq:WP_001127819.1|interpro:IPR011990(Tetratricopeptide-like helical)|refseq:NP_206967.1|ensemblbacteria:AAD07241(transcript)|ensemblbacteria:HP_0168(gene)|uniprotkb:O24975(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RYYaoYhZKafs1dMof2b0/Vk/qdc85962 rogid:7MLF9KFiu1msXkJDJ6ahcEFJhy885962 intact-crc:574D28C5A9AAE001|rigid:NyaN+NXuDMO71ph+0snme+fjnmY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25638 uniprotkb:O24975 intact:EBI-7601848|intact:MINT-166704|ensemblbacteria:AAD08035 intact:EBI-9261086|ensemblbacteria:AAD07241 psi-mi:o25638_helpy(display_long)|uniprotkb:HP_0990(locus name) psi-mi:o24975_helpy(display_long)|uniprotkb:HP_0168(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317817|imex:IM-22256-63 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25638|ensemblbacteria:AAD08035(transcript)|ensemblbacteria:HP_0990(gene)|dip:DIP-3613N|uniprotkb:O25638(identity) refseq:WP_001127819.1|interpro:IPR011990(Tetratricopeptide-like helical)|refseq:NP_206967.1|ensemblbacteria:AAD07241(transcript)|ensemblbacteria:HP_0168(gene)|uniprotkb:O24975(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rVJ82mdECNMncWYnxmuqK6CBT7w85962 rogid:7MLF9KFiu1msXkJDJ6ahcEFJhy885962 intact-crc:7508978546577BD1|rigid:3NJJ1Sj4/lyJyh18jVoDfYP1ntk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O24973 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9261041|ensemblbacteria:AAD07234 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:arsr_helpy(display_long)|uniprotkb:arsR(gene name)|psi-mi:arsR(display_short)|uniprotkb:HP_0166(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317763|imex:IM-22256-60 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_000573710.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|refseq:NP_206965.1|interpro:IPR036388|interpro:IPR039420|ensemblbacteria:AAD07234(transcript)|ensemblbacteria:HP_0166(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0001217"(DNA-binding transcription repressor activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|uniprotkb:O24973(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:tD8+rUIsctQLNplR9mZyZVmqRZI85962 intact-crc:00AA2F325711EA1F|rigid:6hspIOU+Czv1/tvFQ2pLt2GUjwE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25006 uniprotkb:O25975 intact:EBI-7532505|intact:MINT-184430|ensemblbacteria:AAD07287 intact:EBI-7502487|intact:MINT-184955|ensemblbacteria:AAD08476 psi-mi:o25006_helpy(display_long)|uniprotkb:HP_0218(locus name) psi-mi:o25975_helpy(display_long)|uniprotkb:purU(gene name)|psi-mi:purU(display_short)|uniprotkb:"Formyl-FH(4) hydrolase"(gene name synonym)|uniprotkb:HP_1434(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317889|imex:IM-22256-67 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25006|refseq:NP_207016.1|ensemblbacteria:AAD07287(transcript)|ensemblbacteria:HP_0218(gene)|interpro:IPR005247(YbhB and YbcL)|interpro:IPR008914(Phosphatidylethanolamine-binding protein PEBP)|interpro:IPR036610|rcsb pdb:2EVV|refseq:WP_000846523.1|dip:DIP-3281N|uniprotkb:O25006(identity) mint:O25975|refseq:WP_000889170.1|refseq:NP_208225.1|ensemblbacteria:AAD08476(transcript)|ensemblbacteria:HP_1434(gene)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|go:"GO:0008864"(formyltetrahydrofolate deformylase activity)|go:"GO:0016742"(hydroxymethyl-, formyl- and related transferase activity)|interpro:IPR002376(Formyl transferase, N-terminal)|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR004810(Formyltetrahydrofolate deformylase)|interpro:IPR036477|interpro:IPR041729|interpro:IPR044074|dip:DIP-3364N|uniprotkb:O25975(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:cOyMHT1GzLpHZF+MFt+3Y8EZrW085962 rogid:Lhr41VBvdwkNRr7sjPYuRgx9VBw85962 intact-crc:1BE52B81567CB2DA|rigid:FCF1QGgGedhUfj4LYdXCrjbyqwU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24980 uniprotkb:P66142 intact:EBI-7552025|intact:MINT-165751|ensemblbacteria:AAD07248 intact:EBI-9261134|uniprotkb:P56051|ensemblbacteria:AAD07567 psi-mi:psei_helpy(display_long)|uniprotkb:pseI(gene name)|psi-mi:pseI(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein I(gene name synonym)|uniprotkb:HP_0178(locus name) psi-mi:rl28_helpy(display_long)|uniprotkb:rpmB(gene name)|psi-mi:rpmB(display_short)|uniprotkb:HP_0491(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317853|imex:IM-22256-65 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941291.1|mint:O24980|refseq:NP_206977.1|ensemblbacteria:AAD07248(transcript)|ensemblbacteria:HP_0178(gene)|go:"GO:0016051"(carbohydrate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0047444"(N-acylneuraminate-9-phosphate synthase activity)|go:"GO:0070085"(glycosylation)|interpro:IPR006190(Antifreeze-like/N-acetylneuraminic acid synthase C-terminal)|interpro:IPR013132(N-acetylneuraminic acid synthase, N-terminal)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013974(SAF domain)|interpro:IPR020030|interpro:IPR036732|dip:DIP-3369N|uniprotkb:O24980(identity) interpro:IPR026569|refseq:WP_001118998.1|interpro:IPR034704|interpro:IPR001383(Ribosomal protein L28)|refseq:NP_207288.1|interpro:IPR037147|ensemblbacteria:AAD07567(transcript)|ensemblbacteria:HP_0491(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|uniprotkb:P66142(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uZp/YwItniAjhnfvNYjPS7d1M+U85962 rogid:JU7wYa8h4jw0rLZzpz6gl2WaDIM85962 intact-crc:482CB470DAE07B9B|rigid:tloFVIEpzq9DJ2SveH3JsJY9cfw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24976 uniprotkb:O24976 intact:EBI-7517247|intact:MINT-164678|ensemblbacteria:AAD07242 intact:EBI-7517247|intact:MINT-164678|ensemblbacteria:AAD07242 psi-mi:chez_helpy(display_long)|uniprotkb:cheZ(gene name)|psi-mi:cheZ(display_short)|uniprotkb:Chemotaxis protein CheZ(gene name synonym)|uniprotkb:HP_0170(locus name) psi-mi:chez_helpy(display_long)|uniprotkb:cheZ(gene name)|psi-mi:cheZ(display_short)|uniprotkb:Chemotaxis protein CheZ(gene name synonym)|uniprotkb:HP_0170(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317835|imex:IM-22256-64 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24976|refseq:WP_000191026.1|refseq:NP_206969.1|ensemblbacteria:AAD07242(transcript)|ensemblbacteria:HP_0170(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016787"(hydrolase activity)|dip:DIP-3127N|uniprotkb:O24976(identity) mint:O24976|refseq:WP_000191026.1|refseq:NP_206969.1|ensemblbacteria:AAD07242(transcript)|ensemblbacteria:HP_0170(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016787"(hydrolase activity)|dip:DIP-3127N|uniprotkb:O24976(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ztQCRaHH3z1dWpbUnhv/t6PlsFw85962 rogid:ztQCRaHH3z1dWpbUnhv/t6PlsFw85962 intact-crc:99F8AD1E72DA75A6|rigid:qhkP56bQQeomDffDwt94nXikwiQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24992 uniprotkb:Q9ZKJ2 intact:EBI-7531657|intact:MINT-162774|ensemblbacteria:AAD07273 intact:EBI-9261157|ensemblbacteria:AAD06521 psi-mi:o24992_helpy(display_long)|uniprotkb:HP_0199(locus name) psi-mi:q9zkj2_helpj(display_long)|uniprotkb:jhp_0943(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317871|imex:IM-22256-66 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24992|refseq:NP_206998.1|refseq:WP_001159178.1|ensemblbacteria:AAD07273(transcript)|ensemblbacteria:HP_0199(gene)|dip:DIP-3276N|uniprotkb:O24992(identity) ensemblbacteria:AAD06521(transcript)|ensemblbacteria:jhp_0943(gene)|uniprotkb:Q9ZKJ2(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:PKlP/AP/XKmbGdxb+8EzrBJY7Ro85962 rogid:Fd4GrZEw1VnF/1tgidHZSgFgARE85963 intact-crc:3E73301B9D54CAA7|rigid:3/41TYt0bnnalkusnOu/z27PpWY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25014 uniprotkb:O25872 intact:EBI-7513520|intact:MINT-185842|ensemblbacteria:AAD07294 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o25014_helpy(display_long)|uniprotkb:HP_0228(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317961|imex:IM-22256-71 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25014|refseq:NP_207026.1|ensemblbacteria:AAD07294(transcript)|ensemblbacteria:HP_0228(gene)|go:"GO:0015116"(sulfate transmembrane transporter activity)|go:"GO:0016021"(integral component of membrane)|interpro:IPR011547(Sulphate transporter)|refseq:WP_001227442.1|dip:DIP-3077N|uniprotkb:O25014(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r+nXzvsb9D+nJif9V5TrNMZtksY85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:E90FB115563966BE|rigid:WHMCnqANXRvEZmtWvGoyik6DRRE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25008 uniprotkb:Q09065 intact:EBI-7607228|intact:MINT-177413|ensemblbacteria:AAD07288 intact:EBI-7743673|ensemblbacteria:AAD07132|intact:MINT-184930 psi-mi:iscs_helpy(display_long)|uniprotkb:iscS(gene name)|psi-mi:iscS(display_short)|uniprotkb:HP_0220(locus name) psi-mi:uref_helpy(display_long)|uniprotkb:HP_0069(locus name)|uniprotkb:ureF(gene name)|psi-mi:ureF(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317943|imex:IM-22256-70 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941691.1|mint:O25008|refseq:NP_207018.1|ensemblbacteria:AAD07288(transcript)|ensemblbacteria:HP_0220(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006534"(cysteine metabolic process)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0044571"([2Fe-2S] cluster assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR010240(Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017773(Cysteine desulphurase, NifS, proteobacteria)|rcsb pdb:5WT2|rcsb pdb:5WT4|rcsb pdb:5WT5|rcsb pdb:5WT6|rcsb pdb:6KG0|rcsb pdb:6KG1|rcsb pdb:7CET|rcsb pdb:7CEU|dip:DIP-3630N|uniprotkb:O25008(identity) ensemblbacteria:AAD07132(transcript)|ensemblbacteria:HP_0069(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|interpro:IPR002639(Urease accessory protein UreF)|interpro:IPR038277|rcsb pdb:2WGL|rcsb pdb:3CXN|rcsb pdb:3O1Q|rcsb pdb:3SF5|rcsb pdb:4HI0|mint:Q09065|refseq:NP_206869.1|refseq:WP_000357404.1|dip:DIP-3134N|uniprotkb:Q09065(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the removal of elemental sulfur from cysteine to produce alanine function:Probably facilitates nickel incorporation|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YiXCohNQqJR9uWzOaw8ACg2+SmE85962 rogid:k3GQKSjP7d6bt160DmssuuXFrdo85962 intact-crc:954B9FF589A9BBDC|rigid:uUV+VRLQc2WaFtsK4BnSUtVBwtc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:O25008 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7607228|intact:MINT-177413|ensemblbacteria:AAD07288 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:iscs_helpy(display_long)|uniprotkb:iscS(gene name)|psi-mi:iscS(display_short)|uniprotkb:HP_0220(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317907|imex:IM-22256-68 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) refseq:WP_000941691.1|mint:O25008|refseq:NP_207018.1|ensemblbacteria:AAD07288(transcript)|ensemblbacteria:HP_0220(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006534"(cysteine metabolic process)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0044571"([2Fe-2S] cluster assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR010240(Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017773(Cysteine desulphurase, NifS, proteobacteria)|rcsb pdb:5WT2|rcsb pdb:5WT4|rcsb pdb:5WT5|rcsb pdb:5WT6|rcsb pdb:6KG0|rcsb pdb:6KG1|rcsb pdb:7CET|rcsb pdb:7CEU|dip:DIP-3630N|uniprotkb:O25008(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint|function:Catalyzes the removal of elemental sulfur from cysteine to produce alanine figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:YiXCohNQqJR9uWzOaw8ACg2+SmE85962 intact-crc:ABFB048FAF15A17F|rigid:faE7CPiAlKTRcmqLKV2juVpOtM0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25008 uniprotkb:O26062 intact:EBI-7607228|intact:MINT-177413|ensemblbacteria:AAD07288 intact:EBI-9261205|ensemblbacteria:AAD08578 psi-mi:iscs_helpy(display_long)|uniprotkb:iscS(gene name)|psi-mi:iscS(display_short)|uniprotkb:HP_0220(locus name) psi-mi:o26062_helpy(display_long)|uniprotkb:HP_1536(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317925|imex:IM-22256-69 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941691.1|mint:O25008|refseq:NP_207018.1|ensemblbacteria:AAD07288(transcript)|ensemblbacteria:HP_0220(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006534"(cysteine metabolic process)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0044571"([2Fe-2S] cluster assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR010240(Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017773(Cysteine desulphurase, NifS, proteobacteria)|rcsb pdb:5WT2|rcsb pdb:5WT4|rcsb pdb:5WT5|rcsb pdb:5WT6|rcsb pdb:6KG0|rcsb pdb:6KG1|rcsb pdb:7CET|rcsb pdb:7CEU|dip:DIP-3630N|uniprotkb:O25008(identity) ensemblbacteria:AAD08578(transcript)|ensemblbacteria:HP_1536(gene)|uniprotkb:O26062(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the removal of elemental sulfur from cysteine to produce alanine - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YiXCohNQqJR9uWzOaw8ACg2+SmE85962 rogid:VBlCZMrKb5V4eYQSuSaEWJlvMYE85962 intact-crc:8680A2008145133C|rigid:Z5/Di7jlZGQwNmpvzA+3EmGQwTQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O25019 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9261253|ensemblbacteria:AAD07301 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o25019_helpy(display_long)|uniprotkb:HP_0233(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317979|imex:IM-22256-72 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_001197179.1|interpro:IPR005494(Glutathionylspermidine synthase)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:NP_207031.1|ensemblbacteria:AAD07301(transcript)|ensemblbacteria:HP_0233(gene)|go:"GO:0016874"(ligase activity)|uniprotkb:O25019(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:xksnoFIhOdI5NgS6oDqbGHi5IHs85962 intact-crc:E829E2A9D6A2DD00|rigid:w3AnpampEXnmGAHZU8BfdAp6GQM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O25019 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9261253|ensemblbacteria:AAD07301 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o25019_helpy(display_long)|uniprotkb:HP_0233(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9317997|imex:IM-22256-73 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_001197179.1|interpro:IPR005494(Glutathionylspermidine synthase)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:NP_207031.1|ensemblbacteria:AAD07301(transcript)|ensemblbacteria:HP_0233(gene)|go:"GO:0016874"(ligase activity)|uniprotkb:O25019(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:xksnoFIhOdI5NgS6oDqbGHi5IHs85962 intact-crc:D658A0942433D4BE|rigid:w3AnpampEXnmGAHZU8BfdAp6GQM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25023 uniprotkb:O25023 intact:EBI-9261286|ensemblbacteria:AAD07307 intact:EBI-9261286|ensemblbacteria:AAD07307 psi-mi:o25023_helpy(display_long)|uniprotkb:HP_0240(locus name) psi-mi:o25023_helpy(display_long)|uniprotkb:HP_0240(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318015|imex:IM-22256-74 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001156669.1|interpro:IPR033749|interpro:IPR000092(Polyprenyl synthetase)|interpro:IPR008949(Terpenoid synthase)|rcsb pdb:3TC1|refseq:NP_207038.1|ensemblbacteria:AAD07307(transcript)|ensemblbacteria:HP_0240(gene)|go:"GO:0004659"(prenyltransferase activity)|go:"GO:0008299"(isoprenoid biosynthetic process)|uniprotkb:O25023(identity) refseq:WP_001156669.1|interpro:IPR033749|interpro:IPR000092(Polyprenyl synthetase)|interpro:IPR008949(Terpenoid synthase)|rcsb pdb:3TC1|refseq:NP_207038.1|ensemblbacteria:AAD07307(transcript)|ensemblbacteria:HP_0240(gene)|go:"GO:0004659"(prenyltransferase activity)|go:"GO:0008299"(isoprenoid biosynthetic process)|uniprotkb:O25023(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:vfdI5YecnXBLyxGhKQ6cTc0ArRE85962 rogid:vfdI5YecnXBLyxGhKQ6cTc0ArRE85962 intact-crc:34F2D938BBDD66E5|rigid:Ucax1aW0VShlXYfXcXzRhFDXsd0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25032 uniprotkb:O06914 intact:EBI-7677146|ensemblbacteria:AAD07317|intact:MINT-185002 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25032_helpy(display_long)|uniprotkb:HP_0250(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318087|imex:IM-22256-78 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25032|ensemblbacteria:AAD07317(transcript)|ensemblbacteria:HP_0250(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015833"(peptide transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013563(Oligopeptide/dipeptide ABC transporter, C-terminal)|interpro:IPR017871|interpro:IPR027417|refseq:WP_000889818.1|refseq:NP_207048.1|dip:DIP-3283N|uniprotkb:O25032(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qBD8/2nzZq5HL3RCeSMAOErGXxI85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:E9D2FD86E9BFA598|rigid:Mtm7aeQdIQnTSReEcykrJSmBCVs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25026 uniprotkb:P67708 intact:EBI-7493991|intact:MINT-181819|ensemblbacteria:AAD07313 intact:EBI-9261334|uniprotkb:O26079|ensemblbacteria:AAD08597 psi-mi:flgs_helpy(display_long)|uniprotkb:flgS(gene name)|psi-mi:flgS(display_short)|uniprotkb:HP_0244(locus name) psi-mi:flie_helpy(display_long)|uniprotkb:fliE(gene name)|psi-mi:fliE(display_short)|uniprotkb:HP_1557(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318069|imex:IM-22256-77 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25026|refseq:NP_207042.1|refseq:WP_000748581.1|ensemblbacteria:AAD07313(transcript)|ensemblbacteria:HP_0244(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005524"(ATP binding)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR036097|interpro:IPR036890|dip:DIP-3202N|uniprotkb:O25026(identity) refseq:WP_001147918.1|interpro:IPR001624(Flagellar hook-basal body complex protein FliE)|refseq:NP_208348.1|ensemblbacteria:AAD08597(transcript)|ensemblbacteria:HP_1557(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005198"(structural molecule activity)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|uniprotkb:P67708(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1VcNakYVYeRAXDh2vuJCTbs77UA85962 rogid:97Tu4wBlhYAvtjGql+Y0ycyhyps85962 intact-crc:A7D74A5AF9975F27|rigid:mnebb0NAp3G4XtebMJtAh4IPcV4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25026 uniprotkb:O25408 intact:EBI-7493991|intact:MINT-181819|ensemblbacteria:AAD07313 intact:EBI-7587215|intact:MINT-169712|ensemblbacteria:AAD07754 psi-mi:flgs_helpy(display_long)|uniprotkb:flgS(gene name)|psi-mi:flgS(display_short)|uniprotkb:HP_0244(locus name) psi-mi:flgr_helpy(display_long)|uniprotkb:flgR(gene name)|psi-mi:flgR(display_short)|uniprotkb:HP_0703(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318051|imex:IM-22256-76 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25026|refseq:NP_207042.1|refseq:WP_000748581.1|ensemblbacteria:AAD07313(transcript)|ensemblbacteria:HP_0244(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005524"(ATP binding)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR036097|interpro:IPR036890|dip:DIP-3202N|uniprotkb:O25026(identity) refseq:WP_000684509.1|mint:O25408|refseq:NP_207497.1|ensemblbacteria:AAD07754(transcript)|ensemblbacteria:HP_0703(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR027417|interpro:IPR029995|dip:DIP-3569N|uniprotkb:O25408(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1VcNakYVYeRAXDh2vuJCTbs77UA85962 rogid:yVGlhawBwA2BkqU+bcg60p3oOP485962 intact-crc:B82EB71ED6870A08|rigid:V3WNUQCv6NYJ8zqZY2+UoOwk5dk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55977 uniprotkb:O25024 intact:EBI-7723667|ensemblbacteria:AAD08555|intact:MINT-4077929 intact:EBI-7532694|intact:MINT-161331|ensemblbacteria:AAD07311 psi-mi:nusa_helpy(display_long)|uniprotkb:nusA(gene name)|psi-mi:nusA(display_short)|uniprotkb:HP_1514(locus name) psi-mi:o25024_helpy(display_long)|uniprotkb:HP_0241(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318033|imex:IM-22256-75 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55977|ensemblbacteria:AAD08555(transcript)|ensemblbacteria:HP_1514(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0031564"(transcription antitermination)|interpro:IPR003029(S1, RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR010213(Transcription termination factor NusA)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013735(Transcription factor NusA, N-terminal)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR022967|interpro:IPR025249|interpro:IPR030842|interpro:IPR036555|refseq:WP_000411646.1|refseq:NP_208305.1|dip:DIP-3664N|uniprotkb:P55977(identity) ensemblbacteria:AAD07311(transcript)|ensemblbacteria:HP_0241(gene)|dip:DIP-3287N|mint:O25024|refseq:NP_207039.1|refseq:WP_001004080.1|uniprotkb:O25024(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RTwa+hy08+YPTH/PON5T0ltkljM85962 rogid:zLXTbhI/owkvpQZNUgnZHWMCJOo85962 intact-crc:8946D8A264EBE705|rigid:HHaV3+loDPhtmLSm7uK/7VG0GaM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25581 uniprotkb:O25040 intact:EBI-7675108|ensemblbacteria:AAD07977|intact:MINT-177793 intact:EBI-9261425|ensemblbacteria:AAD07328 psi-mi:y924_helpy(display_long)|uniprotkb:HP_0924(locus name) psi-mi:o25040_helpy(display_long)|uniprotkb:HP_0260(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318159|imex:IM-22256-82 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07977(transcript)|ensemblbacteria:HP_0924(gene)|go:"GO:0006725"(cellular aromatic compound metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR004370(4-oxalocrotonate tautomerase)|interpro:IPR014347(Tautomerase)|interpro:IPR018191|rcsb pdb:2ORM|rcsb pdb:3M21|mint:O25581|refseq:NP_207716.1|refseq:WP_001115881.1|dip:DIP-3525N|uniprotkb:O25581(identity) refseq:WP_000549706.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002295(N6 adenine-specific DNA methyltransferase, D21 class)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_207058.1|interpro:IPR029063|ensemblbacteria:AAD07328(transcript)|ensemblbacteria:HP_0260(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|uniprotkb:O25040(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uTfgVa1jx934RIxFBjUfit8hmqU85962 rogid:bpaqKMzy9+r4XtpfsARFIQFH0U085962 intact-crc:80FC3C33C7F5BA08|rigid:+BhoTBvU6nVJraZ35D4z9/y8SKI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25032 uniprotkb:O25693 intact:EBI-7677146|ensemblbacteria:AAD07317|intact:MINT-185002 intact:EBI-9261373|ensemblbacteria:AAD08105 psi-mi:o25032_helpy(display_long)|uniprotkb:HP_0250(locus name) psi-mi:minc_helpy(display_long)|uniprotkb:minC(gene name)|psi-mi:minC(display_short)|uniprotkb:HP_1053(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318105|imex:IM-22256-79 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25032|ensemblbacteria:AAD07317(transcript)|ensemblbacteria:HP_0250(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015833"(peptide transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013563(Oligopeptide/dipeptide ABC transporter, C-terminal)|interpro:IPR017871|interpro:IPR027417|refseq:WP_000889818.1|refseq:NP_207048.1|dip:DIP-3283N|uniprotkb:O25032(identity) refseq:WP_000921052.1|refseq:NP_207844.1|interpro:IPR005526(Septum formation inhibitor MinC, C-terminal)|interpro:IPR013033(Septum formation inhibitor MinC)|interpro:IPR016098(Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal)|interpro:IPR036145|ensemblbacteria:AAD08105(transcript)|ensemblbacteria:HP_1053(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0000917"(division septum assembly)|go:"GO:1901891"(regulation of cell septum assembly)|uniprotkb:O25693(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qBD8/2nzZq5HL3RCeSMAOErGXxI85962 rogid:bj1yqCAycq4MJipngXWZ34uLzxY85962 intact-crc:D5E347B11B3C13E7|rigid:LUF3eBr1Fou7irCelwK+3HY9pL4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25032 uniprotkb:P94845 intact:EBI-7677146|ensemblbacteria:AAD07317|intact:MINT-185002 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 psi-mi:o25032_helpy(display_long)|uniprotkb:HP_0250(locus name) psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318123|imex:IM-22256-80 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25032|ensemblbacteria:AAD07317(transcript)|ensemblbacteria:HP_0250(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015833"(peptide transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013563(Oligopeptide/dipeptide ABC transporter, C-terminal)|interpro:IPR017871|interpro:IPR027417|refseq:WP_000889818.1|refseq:NP_207048.1|dip:DIP-3283N|uniprotkb:O25032(identity) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qBD8/2nzZq5HL3RCeSMAOErGXxI85962 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 intact-crc:9AE71D82A96B03A4|rigid:gGWutXtjJZ1lxi/56e7JLpBR+Gk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25038 uniprotkb:O25038 intact:EBI-9261404|ensemblbacteria:AAD07325 intact:EBI-9261404|ensemblbacteria:AAD07325 psi-mi:o25038_helpy(display_long)|uniprotkb:HP_0257(locus name) psi-mi:o25038_helpy(display_long)|uniprotkb:HP_0257(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318141|imex:IM-22256-81 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001226637.1|interpro:IPR006668(MgtE intracellular region)|refseq:NP_207055.1|interpro:IPR038076|ensemblbacteria:AAD07325(transcript)|ensemblbacteria:HP_0257(gene)|uniprotkb:O25038(identity) refseq:WP_001226637.1|interpro:IPR006668(MgtE intracellular region)|refseq:NP_207055.1|interpro:IPR038076|ensemblbacteria:AAD07325(transcript)|ensemblbacteria:HP_0257(gene)|uniprotkb:O25038(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uVXjhpyFxXT8EXwW+LC/asYO5E885962 rogid:uVXjhpyFxXT8EXwW+LC/asYO5E885962 intact-crc:D0E56757C2C0E202|rigid:AuUHh551dObkQrlY2PYxFTvBPAI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:O25040 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9261425|ensemblbacteria:AAD07328 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25040_helpy(display_long)|uniprotkb:HP_0260(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318213|imex:IM-22256-85 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_000549706.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002295(N6 adenine-specific DNA methyltransferase, D21 class)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_207058.1|interpro:IPR029063|ensemblbacteria:AAD07328(transcript)|ensemblbacteria:HP_0260(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|uniprotkb:O25040(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:bpaqKMzy9+r4XtpfsARFIQFH0U085962 intact-crc:4C97CDA229238E97|rigid:Wj3+qI7SROnXCaOK9IO9fuPdY64 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25756 uniprotkb:O25040 intact:EBI-9261023|ensemblbacteria:AAD08177 intact:EBI-9261425|ensemblbacteria:AAD07328 psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:o25040_helpy(display_long)|uniprotkb:HP_0260(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318177|imex:IM-22256-83 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) refseq:WP_000549706.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002295(N6 adenine-specific DNA methyltransferase, D21 class)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_207058.1|interpro:IPR029063|ensemblbacteria:AAD07328(transcript)|ensemblbacteria:HP_0260(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|uniprotkb:O25040(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 rogid:bpaqKMzy9+r4XtpfsARFIQFH0U085962 intact-crc:CD484001DC3E1589|rigid:SfAHJh8uptW60LkEkS+nPkrM1+E false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25775 uniprotkb:O25040 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 intact:EBI-9261425|ensemblbacteria:AAD07328 psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:o25040_helpy(display_long)|uniprotkb:HP_0260(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318195|imex:IM-22256-84 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) refseq:WP_000549706.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002295(N6 adenine-specific DNA methyltransferase, D21 class)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_207058.1|interpro:IPR029063|ensemblbacteria:AAD07328(transcript)|ensemblbacteria:HP_0260(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|uniprotkb:O25040(identity) psi-mi:"MI:0469"(intact) function:May have metalloprotease activity|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 rogid:bpaqKMzy9+r4XtpfsARFIQFH0U085962 intact-crc:4998CEA4FEBA49E1|rigid:lNyhhUuZND1CdXOZZn8vhyolAB0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25053 uniprotkb:O25392 intact:EBI-7540736|intact:MINT-175004|ensemblbacteria:AAD07349 intact:EBI-9261537|ensemblbacteria:AAD14888 psi-mi:o25053_helpy(display_long)|uniprotkb:HP_0276(locus name) psi-mi:o25392_helpy(display_long)|uniprotkb:HP_0682(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318285|imex:IM-22256-89 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25053|refseq:WP_001155742.1|refseq:NP_207074.1|ensemblbacteria:AAD07349(transcript)|ensemblbacteria:HP_0276(gene)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|go:"GO:0000162"(tryptophan biosynthetic process)|dip:DIP-3325N|uniprotkb:O25053(identity) refseq:WP_010875521.1|refseq:NP_207476.1|ensemblbacteria:AAD14888(transcript)|ensemblbacteria:HP_0682(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25392(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DsRzABLIdfqyaWU6ai6Ur5GhiG485962 rogid:T3j6tVPe/57WhSoOtpu4RuGo/sU85962 intact-crc:9F3571DD1BB825DD|rigid:2ciubs2WRnKyQPmsF+juVKei2TU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25281 uniprotkb:O25041 intact:EBI-7561260|intact:MINT-4065553|ensemblbacteria:AAD07621 intact:EBI-527892|ensemblbacteria:AAD07335 psi-mi:o25281_helpy(display_long)|uniprotkb:HP_0555(locus name) psi-mi:o25041_helpy(display_long)|uniprotkb:HP_0261(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318231|imex:IM-22256-86 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000792823.1|mint:O25281|refseq:NP_207350.1|ensemblbacteria:AAD07621(transcript)|ensemblbacteria:HP_0555(gene)|uniprotkb:O25281(identity) refseq:NP_207059.1|ensemblbacteria:AAD07335(transcript)|ensemblbacteria:HP_0261(gene)|refseq:WP_001160132.1|dip:DIP-3310N|mint:O25041|uniprotkb:O25041(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:j1Ircb978rDdJr0b+ERbTW6corQ85962 rogid:zX/xRjCoqm897hKc69S+nfpOj5c85962 intact-crc:901205BBA23DDD24|rigid:k02+pAzdW66kxBGl03b1P+Kl/uY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25716 uniprotkb:O25045 intact:EBI-7552395|intact:MINT-169791|ensemblbacteria:AAD08128 intact:EBI-9261500|ensemblbacteria:AAD07332 psi-mi:pyrb_helpy(display_long)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short)|uniprotkb:HP_1084(locus name)|uniprotkb:Aspartate transcarbamylase(gene name synonym) psi-mi:pyrx_helpy(display_long)|uniprotkb:pyrC'(gene name)|psi-mi:pyrC'(display_short)|uniprotkb:Aspartate carbamoyltransferase 42 kDa non-catalytic chain(gene name synonym)|uniprotkb:HP_0266(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318249|imex:IM-22256-87 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001124546.1|mint:O25716|refseq:NP_207875.1|ensemblbacteria:AAD08128(transcript)|ensemblbacteria:HP_1084(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|interpro:IPR036901|dip:DIP-3378N|uniprotkb:O25716(identity) interpro:IPR006680(Amidohydrolase 1)|interpro:IPR032466|refseq:WP_000924910.1|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:NP_207064.1|ensemblbacteria:AAD07332(transcript)|ensemblbacteria:HP_0266(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016810"("hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds")|uniprotkb:O25045(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wgK7NS8LKFY/1vDxaLhPKUc9GDs85962 rogid:GfBQ5FxwZW0DuMgk2/OUFLzFSqo85962 intact-crc:7E25C0F3280E694E|rigid:W/mNOMz3/iXCBB1BZZh8CxN65rY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25186 uniprotkb:O25047 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-7598493|intact:MINT-188290|ensemblbacteria:AAD07344 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o25047_helpy(display_long)|uniprotkb:HP_0268(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318267|imex:IM-22256-88 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) mint:O25047|refseq:WP_000780038.1|refseq:NP_207066.1|ensemblbacteria:AAD07344(transcript)|ensemblbacteria:HP_0268(gene)|interpro:IPR040748|rcsb pdb:2MX0|dip:DIP-3592N|uniprotkb:O25047(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:jrVPbj03pIB7/zHcreky8QU8Bak85962 intact-crc:28F0F7D4A23DDB1D|rigid:dQIa8F33lRQ2BAydDV4Bp2LqqP8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25057 uniprotkb:Q9ZKW4 intact:EBI-7616269|intact:MINT-185164|ensemblbacteria:AAD07343 intact:EBI-9261600|ensemblbacteria:AAD06393 psi-mi:o25057_helpy(display_long)|uniprotkb:HP_0280(locus name) psi-mi:q9zkw4_helpj(display_long)|uniprotkb:jhp_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318357|imex:IM-22256-93 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25057|refseq:WP_000221211.1|refseq:NP_207078.1|ensemblbacteria:AAD07343(transcript)|ensemblbacteria:HP_0280(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016746"(acyltransferase activity)|interpro:IPR004960(Bacterial lipid A biosynthesis acyltransferase)|dip:DIP-3692N|uniprotkb:O25057(identity) interpro:IPR002495(Glycosyl transferase, family 8)|interpro:IPR029044|ensemblbacteria:AAD06393(transcript)|ensemblbacteria:jhp_0820(gene)|go:"GO:0016757"(glycosyltransferase activity)|uniprotkb:Q9ZKW4(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yexNbNeceB9jT6t+XmIJP+BuaIA85962 rogid:zzpEOeYpHTao8r++Ew1T+LCI5jA85963 intact-crc:ED9D3CC45BA6E4FA|rigid:3osGigDGtgyMnnIMd4fuYMZxBCA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25053 uniprotkb:O26092 intact:EBI-7540736|intact:MINT-175004|ensemblbacteria:AAD07349 intact:EBI-7497964|intact:MINT-175939|ensemblbacteria:AAD08609 psi-mi:o25053_helpy(display_long)|uniprotkb:HP_0276(locus name) psi-mi:o26092_helpy(display_long)|uniprotkb:HP_1572(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318303|imex:IM-22256-90 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25053|refseq:WP_001155742.1|refseq:NP_207074.1|ensemblbacteria:AAD07349(transcript)|ensemblbacteria:HP_0276(gene)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|go:"GO:0000162"(tryptophan biosynthetic process)|dip:DIP-3325N|uniprotkb:O25053(identity) mint:O26092|refseq:WP_000044457.1|refseq:NP_208363.1|ensemblbacteria:AAD08609(transcript)|ensemblbacteria:HP_1572(gene)|interpro:IPR008258(Lytic transglycosylase-like, catalytic)|interpro:IPR018392|interpro:IPR023346|interpro:IPR036779|dip:DIP-3299N|uniprotkb:O26092(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DsRzABLIdfqyaWU6ai6Ur5GhiG485962 rogid:wrDDc9xcztpd6MTxd/CD1masB7o85962 intact-crc:66128BC78456E90C|rigid:2akYYJLOel3tJyTbvlOGXEQzjFw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56132 uniprotkb:O25053 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-7540736|intact:MINT-175004|ensemblbacteria:AAD07349 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:o25053_helpy(display_long)|uniprotkb:HP_0276(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318321|imex:IM-22256-91 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) mint:O25053|refseq:WP_001155742.1|refseq:NP_207074.1|ensemblbacteria:AAD07349(transcript)|ensemblbacteria:HP_0276(gene)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|go:"GO:0000162"(tryptophan biosynthetic process)|dip:DIP-3325N|uniprotkb:O25053(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:DsRzABLIdfqyaWU6ai6Ur5GhiG485962 intact-crc:ED1A642B494AF607|rigid:mPQtojT9qv0l4/tiNeN+6Obn5Dw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25057 uniprotkb:O25872 intact:EBI-7616269|intact:MINT-185164|ensemblbacteria:AAD07343 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o25057_helpy(display_long)|uniprotkb:HP_0280(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318339|imex:IM-22256-92 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25057|refseq:WP_000221211.1|refseq:NP_207078.1|ensemblbacteria:AAD07343(transcript)|ensemblbacteria:HP_0280(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016746"(acyltransferase activity)|interpro:IPR004960(Bacterial lipid A biosynthesis acyltransferase)|dip:DIP-3692N|uniprotkb:O25057(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yexNbNeceB9jT6t+XmIJP+BuaIA85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:205F3C49D6A43A3E|rigid:yEacv8Bdy8lmseaF2CHcpWKy518 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25064 uniprotkb:P56120 intact:EBI-7688560|ensemblbacteria:AAD07361|intact:MINT-166288 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 psi-mi:o25064_helpy(display_long)|uniprotkb:HP_0291(locus name) psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318411|imex:IM-22256-96 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001171376.1|ensemblbacteria:AAD07361(transcript)|ensemblbacteria:HP_0291(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR002701(Chorismate mutase)|interpro:IPR036263|interpro:IPR036979|rcsb pdb:6AL9|mint:O25064|refseq:NP_207089.1|dip:DIP-3330N|uniprotkb:O25064(identity) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tc+Vvni8F0UgEOiG+5yP/UkCUyg85962 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 intact-crc:63F19311BCA45A32|rigid:lsDQconPTBv4TjjgrOnx54kGvzI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25064 uniprotkb:O25756 intact:EBI-7688560|ensemblbacteria:AAD07361|intact:MINT-166288 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:o25064_helpy(display_long)|uniprotkb:HP_0291(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318375|imex:IM-22256-94 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001171376.1|ensemblbacteria:AAD07361(transcript)|ensemblbacteria:HP_0291(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR002701(Chorismate mutase)|interpro:IPR036263|interpro:IPR036979|rcsb pdb:6AL9|mint:O25064|refseq:NP_207089.1|dip:DIP-3330N|uniprotkb:O25064(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tc+Vvni8F0UgEOiG+5yP/UkCUyg85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:F84D03BC181DA84D|rigid:7AZrrfnb3tcdvMXyMMtYrYRhL38 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25064 uniprotkb:O25775 intact:EBI-7688560|ensemblbacteria:AAD07361|intact:MINT-166288 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 psi-mi:o25064_helpy(display_long)|uniprotkb:HP_0291(locus name) psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318393|imex:IM-22256-95 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001171376.1|ensemblbacteria:AAD07361(transcript)|ensemblbacteria:HP_0291(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR002701(Chorismate mutase)|interpro:IPR036263|interpro:IPR036979|rcsb pdb:6AL9|mint:O25064|refseq:NP_207089.1|dip:DIP-3330N|uniprotkb:O25064(identity) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) psi-mi:"MI:0469"(intact) comment:mint function:May have metalloprotease activity|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tc+Vvni8F0UgEOiG+5yP/UkCUyg85962 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 intact-crc:7C9F5D193A99F425|rigid:f22uA8pFaltgnPIhCo4ZDRPPfr8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94845 uniprotkb:O25064 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-7688560|ensemblbacteria:AAD07361|intact:MINT-166288 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:o25064_helpy(display_long)|uniprotkb:HP_0291(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318429|imex:IM-22256-97 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) refseq:WP_001171376.1|ensemblbacteria:AAD07361(transcript)|ensemblbacteria:HP_0291(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR002701(Chorismate mutase)|interpro:IPR036263|interpro:IPR036979|rcsb pdb:6AL9|mint:O25064|refseq:NP_207089.1|dip:DIP-3330N|uniprotkb:O25064(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:tc+Vvni8F0UgEOiG+5yP/UkCUyg85962 intact-crc:F3C6FA69282CE825|rigid:fPv9PPtLyCUT8SL+C6NOJVCIbfk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25067 uniprotkb:O25790 intact:EBI-7494864|uniprotkb:O32644|intact:MINT-171290|ensemblbacteria:AAD07363 intact:EBI-9261675|ensemblbacteria:AAD08226 psi-mi:amie_helpy(display_long)|uniprotkb:amiE(gene name)|psi-mi:amiE(display_short)|uniprotkb:HP_0294(locus name)|uniprotkb:Acylamide amidohydrolase(gene name synonym) psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318447|imex:IM-22256-98 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25067|interpro:IPR036526|refseq:NP_207092.1|interpro:IPR023719|refseq:WP_001215729.1|interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|ensemblbacteria:AAD07363(transcript)|ensemblbacteria:HP_0294(gene)|go:"GO:0004040"(amidase activity)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016811"("hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides")|go:"GO:0043864"(indoleacetamide hydrolase activity)|uniprotkb:O25067(identity) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia. Hydrolyzes propionamide, acetamide and acrylamide, but has no activity with formamide or urea. The natural substrates of amiE in its gastric environment are not known. Probably functions to ensure nitrogen supply to the bacteria|function:Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates. The highest level of acyl transfer activity is observed with acetamide - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ymqUD2zW+SY6GnnQwH6NQzHbSA485962 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 intact-crc:55C570FA957E68B5|rigid:h6Sf02uAB+/KZqEaNG2wRoE0hYE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25073 uniprotkb:O24990 intact:EBI-9261726|ensemblbacteria:AAD07371 intact:EBI-9261729|ensemblbacteria:AAD07262 psi-mi:o25073_helpy(display_long)|uniprotkb:HP_0302(locus name) psi-mi:fabi_helpy(display_long)|uniprotkb:fabI(gene name)|psi-mi:fabI(display_short)|uniprotkb:NADH-dependent enoyl-ACP reductase(gene name synonym)|uniprotkb:HP_0195(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318501|imex:IM-22256-101 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000770472.1|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013563(Oligopeptide/dipeptide ABC transporter, C-terminal)|interpro:IPR017871|interpro:IPR027417|refseq:NP_207100.1|ensemblbacteria:AAD07371(transcript)|ensemblbacteria:HP_0302(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015833"(peptide transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|uniprotkb:O25073(identity) refseq:WP_000506216.1|interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR014358("Enoyl-[acyl-carrier-protein] reductase (NADH)")|rcsb pdb:2PD3|rcsb pdb:2PD4|refseq:NP_206994.1|interpro:IPR036291|ensemblbacteria:AAD07262(transcript)|ensemblbacteria:HP_0195(gene)|go:"GO:0004318"("enoyl-[acyl-carrier-protein] reductase (NADH) activity")|go:"GO:0016631"(enoyl-[acyl-carrier-protein] reductase activity)|go:"GO:0030497"(fatty acid elongation)|go:"GO:0042802"(identical protein binding)|uniprotkb:O24990(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LEU/H2e4yb32CNka6v9794Ty9gA85962 rogid:/YlueigM6rCrSxgMq+F+Foyvrkk85962 intact-crc:E59D9A32F87B7CB6|rigid:fiY/XsO4yP2nqdnQCE2/GxUTsSU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25074 uniprotkb:O25544 intact:EBI-7495922|intact:MINT-165011|ensemblbacteria:AAD07372 intact:EBI-9261745|ensemblbacteria:AAD07925 psi-mi:obg_helpy(display_long)|uniprotkb:obg(gene name)|psi-mi:obg(display_short)|uniprotkb:GTP-binding protein Obg(gene name synonym)|uniprotkb:HP_0303(locus name) psi-mi:ruvc_helpy(display_long)|uniprotkb:ruvC(gene name)|psi-mi:ruvC(display_short)|uniprotkb:Holliday junction nuclease RuvC(gene name synonym)|uniprotkb:Holliday junction resolvase RuvC(gene name synonym)|uniprotkb:HP_0877(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318519|imex:IM-22256-102 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25074|refseq:NP_207101.1|ensemblbacteria:AAD07372(transcript)|ensemblbacteria:HP_0303(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0042254"(ribosome biogenesis)|interpro:IPR006073(GTP1/OBG)|interpro:IPR006074(GTP1/OBG, conserved site)|interpro:IPR006169(GTP1/OBG subdomain)|interpro:IPR014100(GTP-binding protein Obg/CgtA)|interpro:IPR027417|interpro:IPR031167|interpro:IPR035101|interpro:IPR036726|refseq:WP_000497238.1|dip:DIP-3205N|uniprotkb:O25074(identity) refseq:WP_001221153.1|interpro:IPR002176(Crossover junction endodeoxyribonuclease RuvC)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR020563|refseq:NP_207671.1|interpro:IPR036397|ensemblbacteria:AAD07925(transcript)|ensemblbacteria:HP_0877(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008821"(crossover junction endodeoxyribonuclease activity)|uniprotkb:O25544(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Z4ScsfG28RbDq3tD4CBcIp43yKU85962 rogid:OIge7ikZ0hjuU04ADq18nNHW2NM85962 intact-crc:759632EA04C841CC|rigid:S1DVKI12GC4hzSKJ10odLTt3C+s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24970 uniprotkb:O25068 intact:EBI-7605642|intact:MINT-183344|ensemblbacteria:AAD07231 intact:EBI-7495585|intact:MINT-164466|ensemblbacteria:AAD07364 psi-mi:y162_helpy(display_long)|uniprotkb:HP_0162(locus name) psi-mi:o25068_helpy(display_long)|uniprotkb:HP_0295(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318465|imex:IM-22256-99 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000532084.1|mint:O24970|refseq:NP_206961.1|ensemblbacteria:AAD07231(transcript)|ensemblbacteria:HP_0162(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|rcsb pdb:1MHF|rcsb pdb:1MW7|dip:DIP-3628N|uniprotkb:O24970(identity) mint:O25068|refseq:NP_207093.1|refseq:WP_001266636.1|ensemblbacteria:AAD07364(transcript)|ensemblbacteria:HP_0295(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|interpro:IPR001029(Flagellin, C-terminal)|dip:DIP-3204N|uniprotkb:O25068(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LUGGL2bkvaETPDkdhcm+8A+3STQ85962 rogid:YP2K7SUI3VzdcNHI+BaodN9bTkA85962 intact-crc:881F08A4A007621B|rigid:tONSQve3hD/0ulXRfVVRra/bt5Q false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25441 uniprotkb:O25068 intact:EBI-7534291|intact:MINT-165354|ensemblbacteria:AAD07795 intact:EBI-7495585|intact:MINT-164466|ensemblbacteria:AAD07364 psi-mi:y745_helpy(display_long)|uniprotkb:HP_0745(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:o25068_helpy(display_long)|uniprotkb:HP_0295(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318483|imex:IM-22256-100 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25441|refseq:WP_001174316.1|refseq:NP_207538.1|ensemblbacteria:AAD07795(transcript)|ensemblbacteria:HP_0745(gene)|go:"GO:0000455"(enzyme-directed rRNA pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR002942(RNA-binding S4)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR006225(Pseudouridine synthase, RluD)|interpro:IPR020103|interpro:IPR036986|dip:DIP-3289N|uniprotkb:O25441(identity) mint:O25068|refseq:NP_207093.1|refseq:WP_001266636.1|ensemblbacteria:AAD07364(transcript)|ensemblbacteria:HP_0295(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|interpro:IPR001029(Flagellin, C-terminal)|dip:DIP-3204N|uniprotkb:O25068(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gP9/LoKDS925ltVihbwr3UWq/PA85962 rogid:YP2K7SUI3VzdcNHI+BaodN9bTkA85962 intact-crc:C0C3110EF14453F1|rigid:VvBlFvyJaxhmr+QkIiDJ1X0dF10 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25074 uniprotkb:P56120 intact:EBI-7495922|intact:MINT-165011|ensemblbacteria:AAD07372 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 psi-mi:obg_helpy(display_long)|uniprotkb:obg(gene name)|psi-mi:obg(display_short)|uniprotkb:GTP-binding protein Obg(gene name synonym)|uniprotkb:HP_0303(locus name) psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318555|imex:IM-22256-104 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25074|refseq:NP_207101.1|ensemblbacteria:AAD07372(transcript)|ensemblbacteria:HP_0303(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0042254"(ribosome biogenesis)|interpro:IPR006073(GTP1/OBG)|interpro:IPR006074(GTP1/OBG, conserved site)|interpro:IPR006169(GTP1/OBG subdomain)|interpro:IPR014100(GTP-binding protein Obg/CgtA)|interpro:IPR027417|interpro:IPR031167|interpro:IPR035101|interpro:IPR036726|refseq:WP_000497238.1|dip:DIP-3205N|uniprotkb:O25074(identity) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Z4ScsfG28RbDq3tD4CBcIp43yKU85962 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 intact-crc:A53FB552723219FC|rigid:fu7I5OS3mf2Hm34eJBqxdCSf88k false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25077 uniprotkb:O25872 intact:EBI-9261801|ensemblbacteria:AAD07382 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o25077_helpy(display_long)|uniprotkb:HP_0307(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318573|imex:IM-22256-105 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001010071.1|refseq:NP_207105.1|interpro:IPR032820|ensemblbacteria:AAD07382(transcript)|ensemblbacteria:HP_0307(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25077(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LApTIbHHEgsZvM2J45XTrmlTy5Q85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:1DC370CE4B88BDA3|rigid:IXgM31+Me9NkM636OJ26qXSOlLQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26006 uniprotkb:O25077 intact:EBI-9260077|ensemblbacteria:AAD08511 intact:EBI-9261801|ensemblbacteria:AAD07382 psi-mi:o26006_helpy(display_long)|uniprotkb:HP_1471(locus name) psi-mi:o25077_helpy(display_long)|uniprotkb:HP_0307(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318591|imex:IM-22256-106 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_208262.1|ensemblbacteria:AAD08511(transcript)|ensemblbacteria:HP_1471(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O26006(identity) refseq:WP_001010071.1|refseq:NP_207105.1|interpro:IPR032820|ensemblbacteria:AAD07382(transcript)|ensemblbacteria:HP_0307(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25077(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kutCG3yhuSFassWodi2b+4pXCZA85962 rogid:LApTIbHHEgsZvM2J45XTrmlTy5Q85962 intact-crc:089C2CD78B1A53C6|rigid:S865Pduuk50o+cF5l/iOAc/+wJE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25074 uniprotkb:O25664 intact:EBI-7495922|intact:MINT-165011|ensemblbacteria:AAD07372 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:obg_helpy(display_long)|uniprotkb:obg(gene name)|psi-mi:obg(display_short)|uniprotkb:GTP-binding protein Obg(gene name synonym)|uniprotkb:HP_0303(locus name) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318537|imex:IM-22256-103 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25074|refseq:NP_207101.1|ensemblbacteria:AAD07372(transcript)|ensemblbacteria:HP_0303(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0042254"(ribosome biogenesis)|interpro:IPR006073(GTP1/OBG)|interpro:IPR006074(GTP1/OBG, conserved site)|interpro:IPR006169(GTP1/OBG subdomain)|interpro:IPR014100(GTP-binding protein Obg/CgtA)|interpro:IPR027417|interpro:IPR031167|interpro:IPR035101|interpro:IPR036726|refseq:WP_000497238.1|dip:DIP-3205N|uniprotkb:O25074(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Z4ScsfG28RbDq3tD4CBcIp43yKU85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:2E76393E04517507|rigid:mrvpHpIa49+fWPfc3LcxeKg0mfQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZKW4 uniprotkb:O25077 intact:EBI-9261600|ensemblbacteria:AAD06393 intact:EBI-9261801|ensemblbacteria:AAD07382 psi-mi:q9zkw4_helpj(display_long)|uniprotkb:jhp_0820(locus name) psi-mi:o25077_helpy(display_long)|uniprotkb:HP_0307(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318609|imex:IM-22256-107 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR002495(Glycosyl transferase, family 8)|interpro:IPR029044|ensemblbacteria:AAD06393(transcript)|ensemblbacteria:jhp_0820(gene)|go:"GO:0016757"(glycosyltransferase activity)|uniprotkb:Q9ZKW4(identity) refseq:WP_001010071.1|refseq:NP_207105.1|interpro:IPR032820|ensemblbacteria:AAD07382(transcript)|ensemblbacteria:HP_0307(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25077(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zzpEOeYpHTao8r++Ew1T+LCI5jA85963 rogid:LApTIbHHEgsZvM2J45XTrmlTy5Q85962 intact-crc:D0017043C68A6367|rigid:QxvgvJtPZF9Nr9ldeDkuI1xdB/o false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25079 uniprotkb:O25079 intact:EBI-9261846|ensemblbacteria:AAD07375 intact:EBI-9261846|ensemblbacteria:AAD07375 psi-mi:o25079_helpy(display_long)|uniprotkb:HP_0309(locus name) psi-mi:o25079_helpy(display_long)|uniprotkb:HP_0309(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318627|imex:IM-22256-108 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000850703.1|interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|refseq:NP_207107.1|interpro:IPR036526|ensemblbacteria:AAD07375(transcript)|ensemblbacteria:HP_0309(gene)|go:"GO:0006807"(nitrogen compound metabolic process)|uniprotkb:O25079(identity) refseq:WP_000850703.1|interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|refseq:NP_207107.1|interpro:IPR036526|ensemblbacteria:AAD07375(transcript)|ensemblbacteria:HP_0309(gene)|go:"GO:0006807"(nitrogen compound metabolic process)|uniprotkb:O25079(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lcGytOQVURF99Y15h6GCIjVPVcA85962 rogid:lcGytOQVURF99Y15h6GCIjVPVcA85962 intact-crc:D619F3578268C41C|rigid:djboz6qnfc972XPNK93qrUCoTR4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26071 uniprotkb:O25088 intact:EBI-9261904|ensemblbacteria:AAD08590 intact:EBI-9261900|ensemblbacteria:AAD07397 psi-mi:o26071_helpy(display_long)|uniprotkb:HP_1546(locus name) psi-mi:tata_helpy(display_long)|uniprotkb:tatA(gene name)|psi-mi:tatA(display_short)|uniprotkb:HP_0320(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318681|imex:IM-22256-111 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001202125.1|interpro:IPR007485(Rare lipoprotein B)|refseq:NP_208337.1|ensemblbacteria:AAD08590(transcript)|ensemblbacteria:HP_1546(gene)|go:"GO:0019867"(outer membrane)|go:"GO:0043165"(Gram-negative-bacterium-type cell outer membrane assembly)|uniprotkb:O26071(identity) refseq:WP_000508588.1|interpro:IPR003369(Bacterial sec-independent translocation protein mttA/Hcf106)|interpro:IPR006312(Twin-arginine translocation protein TatA/E)|refseq:NP_207118.1|ensemblbacteria:AAD07397(transcript)|ensemblbacteria:HP_0320(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0008320"(protein transmembrane transporter activity)|go:"GO:0033281"(TAT protein transport complex)|go:"GO:0043953"(protein transport by the Tat complex)|uniprotkb:O25088(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:G4XOzucE1Mq9a/cBvsA+kr5IyHk85962 rogid:XRim7qZHXwtLLnEtU7oG1XpImCw85962 intact-crc:27785D67E58D7EB6|rigid:97DfcMgNzTIq1y9UiQ2IPPKk2Wg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25082 uniprotkb:O25081 intact:EBI-7546005|intact:MINT-170644|ensemblbacteria:AAD07377 intact:EBI-7546018|intact:MINT-170638|ensemblbacteria:AAD07384 psi-mi:o25082_helpy(display_long)|uniprotkb:HP_0312(locus name) psi-mi:o25081_helpy(display_long)|uniprotkb:HP_0311(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318645|imex:IM-22256-109 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001124369.1|mint:O25082|refseq:NP_207110.1|ensemblbacteria:AAD07377(transcript)|ensemblbacteria:HP_0312(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|interpro:IPR003495("Cobalamin (vitamin B12) biosynthesis CobW-like")|interpro:IPR011629("Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal")|interpro:IPR027417|interpro:IPR036627|go:"GO:0005524"(ATP binding)|dip:DIP-3334N|uniprotkb:O25082(identity) refseq:WP_000337920.1|mint:O25081|refseq:NP_207109.1|ensemblbacteria:AAD07384(transcript)|ensemblbacteria:HP_0311(gene)|dip:DIP-3333N|uniprotkb:O25081(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GMlFAvpMGm6ElCxjSO6rfSr7ODw85962 rogid:5b+AGevXpL4mjMyCKajRp8huzHw85962 intact-crc:8045E31A8525F12C|rigid:ZViB0KIuKiKJX1gZT/qR0NP1Kgo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25083 uniprotkb:O25990 intact:EBI-9261879|ensemblbacteria:AAD07378 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o25083_helpy(display_long)|uniprotkb:HP_0313(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318663|imex:IM-22256-110 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR010645(Protein of unknown function DUF1228)|refseq:WP_001263616.1|interpro:IPR020846|refseq:NP_207111.1|interpro:IPR036259|ensemblbacteria:AAD07378(transcript)|ensemblbacteria:HP_0313(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0008643"(carbohydrate transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0022857"(transmembrane transporter activity)|uniprotkb:O25083(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7nAosFcdcNHZcxbgXK18kDvb1lo85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:101BBCDBF8A1974B|rigid:bKfer6h/iTgkp+2yR05Ch2ZuXW4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25097 uniprotkb:O25097 intact:EBI-9261967|ensemblbacteria:AAD07399 intact:EBI-9261967|ensemblbacteria:AAD07399 psi-mi:ilvc_helpy(display_long)|uniprotkb:Ketol-acid reductoisomerase type 1(gene name synonym)|uniprotkb:Ketol-acid reductoisomerase type I(gene name synonym)|uniprotkb:HP_0330(locus name)|uniprotkb:ilvC(gene name)|psi-mi:ilvC(display_short)|uniprotkb:Acetohydroxy-acid isomeroreductase(gene name synonym)|uniprotkb:Alpha-keto-beta-hydroxylacyl reductoisomerase(gene name synonym) psi-mi:ilvc_helpy(display_long)|uniprotkb:Ketol-acid reductoisomerase type 1(gene name synonym)|uniprotkb:Ketol-acid reductoisomerase type I(gene name synonym)|uniprotkb:HP_0330(locus name)|uniprotkb:ilvC(gene name)|psi-mi:ilvC(display_short)|uniprotkb:Acetohydroxy-acid isomeroreductase(gene name synonym)|uniprotkb:Alpha-keto-beta-hydroxylacyl reductoisomerase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318753|imex:IM-22256-115 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001207734.1|interpro:IPR000506(Acetohydroxy acid isomeroreductase C-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR013023(Acetohydroxy acid isomeroreductase)|interpro:IPR013116(Acetohydroxy acid isomeroreductase, catalytic)|refseq:NP_207128.1|interpro:IPR014359(Ketol-acid reductoisomerase, gammaproteobacteria)|interpro:IPR036291|ensemblbacteria:AAD07399(transcript)|ensemblbacteria:HP_0330(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004455"(ketol-acid reductoisomerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0050661"(NADP binding)|uniprotkb:O25097(identity) refseq:WP_001207734.1|interpro:IPR000506(Acetohydroxy acid isomeroreductase C-terminal)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR013023(Acetohydroxy acid isomeroreductase)|interpro:IPR013116(Acetohydroxy acid isomeroreductase, catalytic)|refseq:NP_207128.1|interpro:IPR014359(Ketol-acid reductoisomerase, gammaproteobacteria)|interpro:IPR036291|ensemblbacteria:AAD07399(transcript)|ensemblbacteria:HP_0330(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004455"(ketol-acid reductoisomerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0009097"(isoleucine biosynthetic process)|go:"GO:0009099"(valine biosynthetic process)|go:"GO:0050661"(NADP binding)|uniprotkb:O25097(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:sXf+0CQ0m9bfbubNKX3up5Okg0w85962 rogid:sXf+0CQ0m9bfbubNKX3up5Okg0w85962 intact-crc:F752E8E2D21E4B71|rigid:QiSxZtoob881T6wTj0XHGloBgb4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25092 uniprotkb:O25038 intact:EBI-7493789|intact:MINT-161216|ensemblbacteria:AAD07392 intact:EBI-9261404|ensemblbacteria:AAD07325 psi-mi:flgh_helpy(display_long)|uniprotkb:flgH(gene name)|psi-mi:flgH(display_short)|uniprotkb:HP_0325(locus name)|uniprotkb:Basal body L-ring protein(gene name synonym) psi-mi:o25038_helpy(display_long)|uniprotkb:HP_0257(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318699|imex:IM-22256-112 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25092|refseq:NP_207123.1|refseq:WP_000709989.1|ensemblbacteria:AAD07392(transcript)|ensemblbacteria:HP_0325(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0009279"(cell outer membrane)|go:"GO:0009427"(bacterial-type flagellum basal body, distal rod, L ring)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR000527(Flagellar L-ring protein)|dip:DIP-3206N|uniprotkb:O25092(identity) refseq:WP_001226637.1|interpro:IPR006668(MgtE intracellular region)|refseq:NP_207055.1|interpro:IPR038076|ensemblbacteria:AAD07325(transcript)|ensemblbacteria:HP_0257(gene)|uniprotkb:O25038(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MrKUGtUwSfmxEg4i9HrJydiu+HU85962 rogid:uVXjhpyFxXT8EXwW+LC/asYO5E885962 intact-crc:82C9B50C9AB47DE3|rigid:8QDU/tcnxoM/NdCvprJc4E/O8Lc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25092 uniprotkb:O25092 intact:EBI-7493789|intact:MINT-161216|ensemblbacteria:AAD07392 intact:EBI-7493789|intact:MINT-161216|ensemblbacteria:AAD07392 psi-mi:flgh_helpy(display_long)|uniprotkb:flgH(gene name)|psi-mi:flgH(display_short)|uniprotkb:HP_0325(locus name)|uniprotkb:Basal body L-ring protein(gene name synonym) psi-mi:flgh_helpy(display_long)|uniprotkb:flgH(gene name)|psi-mi:flgH(display_short)|uniprotkb:HP_0325(locus name)|uniprotkb:Basal body L-ring protein(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318717|imex:IM-22256-113 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25092|refseq:NP_207123.1|refseq:WP_000709989.1|ensemblbacteria:AAD07392(transcript)|ensemblbacteria:HP_0325(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0009279"(cell outer membrane)|go:"GO:0009427"(bacterial-type flagellum basal body, distal rod, L ring)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR000527(Flagellar L-ring protein)|dip:DIP-3206N|uniprotkb:O25092(identity) mint:O25092|refseq:NP_207123.1|refseq:WP_000709989.1|ensemblbacteria:AAD07392(transcript)|ensemblbacteria:HP_0325(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0009279"(cell outer membrane)|go:"GO:0009427"(bacterial-type flagellum basal body, distal rod, L ring)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR000527(Flagellar L-ring protein)|dip:DIP-3206N|uniprotkb:O25092(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation comment:mint|function:Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MrKUGtUwSfmxEg4i9HrJydiu+HU85962 rogid:MrKUGtUwSfmxEg4i9HrJydiu+HU85962 intact-crc:BA29C0411F22042A|rigid:EmJg6qiY6g2lNGCZdYqIX6B/Bh0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25094 uniprotkb:O25094 intact:EBI-7584994|intact:MINT-171400|ensemblbacteria:AAD07394 intact:EBI-7584994|intact:MINT-171400|ensemblbacteria:AAD07394 psi-mi:pseh_helpy(display_long)|uniprotkb:pseH(gene name)|psi-mi:pseH(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein H(gene name synonym)|uniprotkb:HP_0327(locus name) psi-mi:pseh_helpy(display_long)|uniprotkb:pseH(gene name)|psi-mi:pseH(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein H(gene name synonym)|uniprotkb:HP_0327(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318735|imex:IM-22256-114 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25094|refseq:WP_000742697.1|refseq:NP_207125.1|ensemblbacteria:AAD07394(transcript)|ensemblbacteria:HP_0327(gene)|go:"GO:0008080"(N-acetyltransferase activity)|interpro:IPR000182(GCN5-related N-acetyltransferase)|interpro:IPR016181(Acyl-CoA N-acyltransferase)|interpro:IPR020036|rcsb pdb:4RI1|dip:DIP-3555N|uniprotkb:O25094(identity) mint:O25094|refseq:WP_000742697.1|refseq:NP_207125.1|ensemblbacteria:AAD07394(transcript)|ensemblbacteria:HP_0327(gene)|go:"GO:0008080"(N-acetyltransferase activity)|interpro:IPR000182(GCN5-related N-acetyltransferase)|interpro:IPR016181(Acyl-CoA N-acyltransferase)|interpro:IPR020036|rcsb pdb:4RI1|dip:DIP-3555N|uniprotkb:O25094(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uDBKnnI5LujCSAw9Z5WaulboR8Y85962 rogid:uDBKnnI5LujCSAw9Z5WaulboR8Y85962 intact-crc:0C1E35D67036A69B|rigid:D8BRTu+HjWh8cf6dUz4IiJrhuEc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25101 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9262016|ensemblbacteria:AAD07403 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:yqgf_helpy(display_long)|uniprotkb:HP_0334(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318807|imex:IM-22256-118 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000599146.1|interpro:IPR005227(Resolvase, holliday junction-type, YqgF-like)|interpro:IPR006641(Resolvase, RNase H-like fold)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:NP_207132.1|interpro:IPR037027|ensemblbacteria:AAD07403(transcript)|ensemblbacteria:HP_0334(gene)|go:"GO:0000967"(rRNA 5'-end processing)|go:"GO:0004518"(nuclease activity)|go:"GO:0005737"(cytoplasm)|uniprotkb:O25101(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:Jlbnu5jYU0Nw9QkpBzBKecpGof885962 intact-crc:33798B687E8A550B|rigid:aSiWuCWmRVfLsBtP9OD/NlaPKQI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25099 uniprotkb:O25099 intact:EBI-7562109|intact:MINT-161035|ensemblbacteria:AAD07401 intact:EBI-7562109|intact:MINT-161035|ensemblbacteria:AAD07401 psi-mi:mine_helpy(display_long)|uniprotkb:minE(gene name)|psi-mi:minE(display_short)|uniprotkb:HP_0332(locus name) psi-mi:mine_helpy(display_long)|uniprotkb:minE(gene name)|psi-mi:minE(display_short)|uniprotkb:HP_0332(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318771|imex:IM-22256-116 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25099|refseq:WP_000051415.1|refseq:NP_207130.1|ensemblbacteria:AAD07401(transcript)|ensemblbacteria:HP_0332(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0032955"(regulation of division septum assembly)|go:"GO:0051301"(cell division)|interpro:IPR005527(Septum formation topological specificity factor MinE)|interpro:IPR036707|rcsb pdb:3KU7|rcsb pdb:3MCD|dip:DIP-3672N|uniprotkb:O25099(identity) mint:O25099|refseq:WP_000051415.1|refseq:NP_207130.1|ensemblbacteria:AAD07401(transcript)|ensemblbacteria:HP_0332(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0032955"(regulation of division septum assembly)|go:"GO:0051301"(cell division)|interpro:IPR005527(Septum formation topological specificity factor MinE)|interpro:IPR036707|rcsb pdb:3KU7|rcsb pdb:3MCD|dip:DIP-3672N|uniprotkb:O25099(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Prevents the cell division inhibition by proteins minC and minD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell comment:mint|function:Prevents the cell division inhibition by proteins minC and minD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MR6BnOq7iBngB05n4bLzChbXLtU85962 rogid:MR6BnOq7iBngB05n4bLzChbXLtU85962 intact-crc:D63A492646FC2671|rigid:SN9UuRz/xjl064xOqjjNPHeWweo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25100 uniprotkb:O25100 intact:EBI-9261998|ensemblbacteria:AAD07402 intact:EBI-9261998|ensemblbacteria:AAD07402 psi-mi:o25100_helpy(display_long)|uniprotkb:HP_0333(locus name) psi-mi:o25100_helpy(display_long)|uniprotkb:HP_0333(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318789|imex:IM-22256-117 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:5MLL|refseq:WP_001076175.1|interpro:IPR003488(SMF protein)|rcsb pdb:4LJK|rcsb pdb:4LJL|rcsb pdb:4LJR|refseq:NP_207131.1|ensemblbacteria:AAD07402(transcript)|ensemblbacteria:HP_0333(gene)|go:"GO:0009294"(DNA mediated transformation)|uniprotkb:O25100(identity) rcsb pdb:5MLL|refseq:WP_001076175.1|interpro:IPR003488(SMF protein)|rcsb pdb:4LJK|rcsb pdb:4LJL|rcsb pdb:4LJR|refseq:NP_207131.1|ensemblbacteria:AAD07402(transcript)|ensemblbacteria:HP_0333(gene)|go:"GO:0009294"(DNA mediated transformation)|uniprotkb:O25100(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:97y6aOKWioKCaZB9K7rXECD0EEg85962 rogid:97y6aOKWioKCaZB9K7rXECD0EEg85962 intact-crc:C11E09AEB6912D0C|rigid:i9QUmHtVTRUqUIkUmrvbGqeG5xo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25114 uniprotkb:O25310 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318861|imex:IM-22256-121 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 intact-crc:C5DEA01E58811A23|rigid:qB3v6ew+PDORj20oqOT5nAP5ZxA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25105 uniprotkb:O25872 intact:EBI-7503644|intact:MINT-180968|ensemblbacteria:AAD07410 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o25105_helpy(display_long)|uniprotkb:HP_0338(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318825|imex:IM-22256-119 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25105|refseq:WP_000032376.1|refseq:NP_207136.1|ensemblbacteria:AAD07410(transcript)|ensemblbacteria:HP_0338(gene)|go:"GO:0016021"(integral component of membrane)|dip:DIP-3338N|uniprotkb:O25105(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oUNT8jLP6OcR5ik9/ILB8JcUTxY85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:FD03CABE4D227DA5|rigid:CdUqc5iJlxMZRYDbidoarcC6ZnQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25114 uniprotkb:O06914 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318843|imex:IM-22256-120 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:04E8DFB582A51781|rigid:f0oYLkCsYM88gGSNTgRGy702k9o false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:O25114 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318915|imex:IM-22256-124 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 intact-crc:C87A2DA4C95C3A19|rigid:bXmZE3y8bWvgg2uBZo6q7ggN+lc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O25114 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318879|imex:IM-22256-122 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 intact-crc:6B5A1B84A79CE539|rigid:2U6BWopAL+GREqyArdFqe1/tDH8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25114 uniprotkb:O25669 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 intact:EBI-6415953|ensemblbacteria:AAD08067 psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318897|imex:IM-22256-123 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 intact-crc:29FA19B54DB143A8|rigid:CizYyhX/JqHRwyrZhdhQy5IOCFk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25118 uniprotkb:O25498 intact:EBI-7624951|intact:MINT-168989|ensemblbacteria:AAD07419 intact:EBI-9262160|ensemblbacteria:AAD07873 psi-mi:o25118_helpy(display_long)|uniprotkb:HP_0351(locus name) psi-mi:o25498_helpy(display_long)|uniprotkb:HP_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318969|imex:IM-22256-127 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000364750.1|mint:O25118|refseq:NP_207149.1|interpro:IPR006182(Secretory protein YscJ/FliF)|interpro:IPR013556(Flagellar M-ring C-terminal)|interpro:IPR043427|rcsb pdb:5WUJ|interpro:IPR000067(Flagellar FliF M-ring protein)|ensemblbacteria:AAD07419(transcript)|ensemblbacteria:HP_0351(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0009431"(bacterial-type flagellum basal body, MS ring)|go:"GO:0016021"(integral component of membrane)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|dip:DIP-3719N|uniprotkb:O25118(identity) refseq:WP_000437145.1|refseq:NP_207613.1|ensemblbacteria:AAD07873(transcript)|ensemblbacteria:HP_0820(gene)|uniprotkb:O25498(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wNqcth9m8x/X8S9DZWTIzjHaccg85962 rogid:cBhLCWEqc9/QdJfjtCvo7ltwdJs85962 intact-crc:D2F34E3B9D9F453E|rigid:1O+ZoQ5Ly+tVclEQd3fEkbkhu3Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94844 uniprotkb:O25114 intact:EBI-7497752|intact:MINT-169897|ensemblbacteria:AAD07574 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 psi-mi:dapb_helpy(display_long)|uniprotkb:dapB(gene name)|psi-mi:dapB(display_short)|uniprotkb:HP_0510(locus name) psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318933|imex:IM-22256-125 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94844|refseq:NP_207307.1|ensemblbacteria:AAD07574(transcript)|ensemblbacteria:HP_0510(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008839"(4-hydroxy-tetrahydrodipicolinate reductase)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|go:"GO:0016726"(oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor)|go:"GO:0019877"(diaminopimelate biosynthetic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR000846(Dihydrodipicolinate reductase)|interpro:IPR022663|interpro:IPR022664|interpro:IPR023940|interpro:IPR036291|refseq:WP_000690507.1|dip:DIP-3440N|uniprotkb:P94844(identity) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1EolLbxEd+2rwOC7IkY5mTucYtk85962 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 intact-crc:57895C6A57E4C774|rigid:NtdcaevjrKlXe+E81SfYQ61Y+7I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:O25115 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9262139|ensemblbacteria:AAD07405 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25115_helpy(display_long)|uniprotkb:HP_0348(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318951|imex:IM-22256-126 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_000810700.1|interpro:IPR038763|interpro:IPR001667(Phosphoesterase, RecJ-like)|interpro:IPR003156(Phosphoesterase, DHHA1)|interpro:IPR004610(Bacterial RecJ exonuclease)|refseq:NP_207146.1|interpro:IPR041122|ensemblbacteria:AAD07405(transcript)|ensemblbacteria:HP_0348(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008409"(5'-3' exonuclease activity)|uniprotkb:O25115(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:UBfowhKiIHxI+JItQgqYa6/EDqM85962 intact-crc:2B38F03C516EA0EF|rigid:rw+6HA9mLXSbrmJPJYRKYjbirLs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25119 uniprotkb:O34995 intact:EBI-7583244|intact:MINT-166826|ensemblbacteria:AAD07420 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:flig_helpy(display_long)|uniprotkb:fliG(gene name)|psi-mi:fliG(display_short)|uniprotkb:C694_01785(locus name)|uniprotkb:HP_0352(locus name)|uniprotkb:Flagellar motor switch protein G(gene name synonym) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319023|imex:IM-22256-130 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25119|refseq:WP_000201853.1|refseq:NP_207150.1|ensemblbacteria:AAD07420(transcript)|ensemblbacteria:HP_0352(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR000090(Flagellar motor switch protein FliG)|interpro:IPR011002(Flagellar motor switch protein FliG, alpha-helical)|interpro:IPR023087|interpro:IPR028263|interpro:IPR032779|rcsb pdb:3USW|rcsb pdb:3USY|rcsb pdb:4FQ0|rcsb pdb:5WUJ|dip:DIP-3534N|uniprotkb:O25119(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:88Pu9wPqI7cfXsmfz+lPFljb4pY85962 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:8F3F87F89428AB03|rigid:Z7IzaWBuS+Yw0B6s5AxxCB15hsY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25118 uniprotkb:O25119 intact:EBI-7624951|intact:MINT-168989|ensemblbacteria:AAD07419 intact:EBI-7583244|intact:MINT-166826|ensemblbacteria:AAD07420 psi-mi:o25118_helpy(display_long)|uniprotkb:HP_0351(locus name) psi-mi:flig_helpy(display_long)|uniprotkb:fliG(gene name)|psi-mi:fliG(display_short)|uniprotkb:C694_01785(locus name)|uniprotkb:HP_0352(locus name)|uniprotkb:Flagellar motor switch protein G(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9318987|imex:IM-22256-128 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000364750.1|mint:O25118|refseq:NP_207149.1|interpro:IPR006182(Secretory protein YscJ/FliF)|interpro:IPR013556(Flagellar M-ring C-terminal)|interpro:IPR043427|rcsb pdb:5WUJ|interpro:IPR000067(Flagellar FliF M-ring protein)|ensemblbacteria:AAD07419(transcript)|ensemblbacteria:HP_0351(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0009431"(bacterial-type flagellum basal body, MS ring)|go:"GO:0016021"(integral component of membrane)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|dip:DIP-3719N|uniprotkb:O25118(identity) mint:O25119|refseq:WP_000201853.1|refseq:NP_207150.1|ensemblbacteria:AAD07420(transcript)|ensemblbacteria:HP_0352(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR000090(Flagellar motor switch protein FliG)|interpro:IPR011002(Flagellar motor switch protein FliG, alpha-helical)|interpro:IPR023087|interpro:IPR028263|interpro:IPR032779|rcsb pdb:3USW|rcsb pdb:3USY|rcsb pdb:4FQ0|rcsb pdb:5WUJ|dip:DIP-3534N|uniprotkb:O25119(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wNqcth9m8x/X8S9DZWTIzjHaccg85962 rogid:88Pu9wPqI7cfXsmfz+lPFljb4pY85962 intact-crc:2890A6732C131718|rigid:f/1kNWpegtWC7DAfi77J9rU7Adg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25119 uniprotkb:O25674 intact:EBI-7583244|intact:MINT-166826|ensemblbacteria:AAD07420 intact:EBI-7559878|intact:MINT-4065399|ensemblbacteria:AAD08074 psi-mi:flig_helpy(display_long)|uniprotkb:fliG(gene name)|psi-mi:fliG(display_short)|uniprotkb:C694_01785(locus name)|uniprotkb:HP_0352(locus name)|uniprotkb:Flagellar motor switch protein G(gene name synonym) psi-mi:o25674_helpy(display_long)|uniprotkb:HP_1030(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319005|imex:IM-22256-129 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25119|refseq:WP_000201853.1|refseq:NP_207150.1|ensemblbacteria:AAD07420(transcript)|ensemblbacteria:HP_0352(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR000090(Flagellar motor switch protein FliG)|interpro:IPR011002(Flagellar motor switch protein FliG, alpha-helical)|interpro:IPR023087|interpro:IPR028263|interpro:IPR032779|rcsb pdb:3USW|rcsb pdb:3USY|rcsb pdb:4FQ0|rcsb pdb:5WUJ|dip:DIP-3534N|uniprotkb:O25119(identity) interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|mint:O25674|refseq:WP_001150629.1|interpro:IPR036429|refseq:NP_207820.1|interpro:IPR028976|ensemblbacteria:AAD08074(transcript)|ensemblbacteria:HP_1030(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|rcsb pdb:5XRW|uniprotkb:O25674(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:88Pu9wPqI7cfXsmfz+lPFljb4pY85962 rogid:Wh43hksoYo8r/6ZiCbBBRMIq0ko85962 intact-crc:0CB5F303DBDBBC23|rigid:cwywP728Evxn1tYzmiWRyEKzYWg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25120 uniprotkb:O25120 intact:EBI-958087|ensemblbacteria:AAD07421 intact:EBI-958087|ensemblbacteria:AAD07421 psi-mi:o25120_helpy(display_long)|uniprotkb:HP_0353(locus name) psi-mi:o25120_helpy(display_long)|uniprotkb:HP_0353(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319041|imex:IM-22256-131 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207151.1|ensemblbacteria:AAD07421(transcript)|ensemblbacteria:HP_0353(gene)|go:"GO:0005829"(cytosol)|go:"GO:0042802"(identical protein binding)|interpro:IPR018035|refseq:WP_000056222.1|mint:O25120|dip:DIP-3389N|uniprotkb:O25120(identity) refseq:NP_207151.1|ensemblbacteria:AAD07421(transcript)|ensemblbacteria:HP_0353(gene)|go:"GO:0005829"(cytosol)|go:"GO:0042802"(identical protein binding)|interpro:IPR018035|refseq:WP_000056222.1|mint:O25120|dip:DIP-3389N|uniprotkb:O25120(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:fm+JdqLw8CUsLWheaipN3wHJ0pE85962 rogid:fm+JdqLw8CUsLWheaipN3wHJ0pE85962 intact-crc:422C19E08AB035BD|rigid:rIK3BeBQrvmhCZb2ekrRkggq1eM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25121 uniprotkb:O25113 intact:EBI-7514472|intact:MINT-163092|ensemblbacteria:AAD07422 intact:EBI-7633054|ensemblbacteria:AAD07417|intact:MINT-187451 psi-mi:dxs_helpy(display_long)|uniprotkb:dxs(gene name)|psi-mi:dxs(display_short)|uniprotkb:HP_0354(locus name)|uniprotkb:1-deoxyxylulose-5-phosphate synthase(gene name synonym) psi-mi:o25113_helpy(display_long)|uniprotkb:HP_0346(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319059|imex:IM-22256-132 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000602987.1|mint:O25121|refseq:NP_207152.1|ensemblbacteria:AAD07422(transcript)|ensemblbacteria:HP_0354(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005829"(cytosol)|go:"GO:0008661"(1-deoxy-D-xylulose-5-phosphate synthase activity)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0016744"(transketolase or transaldolase activity)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0052865"(1-deoxy-D-xylulose 5-phosphate biosynthetic process)|interpro:IPR005474(Transketolase, N-terminal)|interpro:IPR005475(Transketolase, central region)|interpro:IPR005477(Deoxyxylulose-5-phosphate synthase)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR020826|interpro:IPR029061|interpro:IPR033248|dip:DIP-3091N|uniprotkb:O25121(identity) ensemblbacteria:AAD07417(transcript)|ensemblbacteria:HP_0346(gene)|mint:O25113|refseq:WP_010875469.1|dip:DIP-3740N|uniprotkb:O25113(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:g2XL4afy1FuILnberhjoAibXtlo85962 rogid:3tDHTPf4i6qTBg5T+5R4VwGUUfo85962 intact-crc:8E99B0FAB91C8C59|rigid:ElBd3V/MAg2CiH4aNZNGxyspmPI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25122 uniprotkb:O25186 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319077|imex:IM-22256-133 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 intact-crc:B40DA08E89CA3136|rigid:fDRM2XICS6OliSiVTBsfvsPwJR8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25122 uniprotkb:P56042 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-9262301|ensemblbacteria:AAD08335 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:rl17_helpy(display_long)|uniprotkb:rplQ(gene name)|psi-mi:rplQ(display_short)|uniprotkb:HP_1292(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319131|imex:IM-22256-136 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) refseq:WP_001216119.1|interpro:IPR000456(Ribosomal protein L17)|refseq:NP_208084.1|interpro:IPR036373|ensemblbacteria:AAD08335(transcript)|ensemblbacteria:HP_1292(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56042(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:ooZamXxqutJrfs+ncATbxae1dRY85962 intact-crc:A5E4943A35638A01|rigid:6XJqy4CuRwcXZXRtyyjC73pXigQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25122 uniprotkb:O25417 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-9262268|ensemblbacteria:AAD07765 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:o25417_helpy(display_long)|uniprotkb:HP_0715(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319095|imex:IM-22256-134 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) refseq:WP_000353241.1|interpro:IPR030921|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:NP_207509.1|ensemblbacteria:AAD07765(transcript)|ensemblbacteria:HP_0715(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015803"(branched-chain amino acid transport)|go:"GO:0015807"(L-amino acid transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|uniprotkb:O25417(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:EtbfiHVp0ygQ/Yc+5Yl7Y4UZha485962 intact-crc:3ED7CBB024828FDC|rigid:1z0Uyzc0c6mpRc6DICBp3QfctMg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25122 uniprotkb:O25664 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319113|imex:IM-22256-135 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:FBB110F3C6D808C5|rigid:EaN1K4Fy8mF3e1U6QzTyOPthF+A false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25126 uniprotkb:Q9ZKX1 intact:EBI-9262356|ensemblbacteria:AAD07439 intact:EBI-9262359|ensemblbacteria:AAD06383 psi-mi:o25126_helpy(display_long)|uniprotkb:HP_0359(locus name) psi-mi:q9zkx1_helpj(display_long)|uniprotkb:jhp_0813(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319185|imex:IM-22256-139 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07439(transcript)|ensemblbacteria:HP_0359(gene)|uniprotkb:O25126(identity) interpro:IPR021907|ensemblbacteria:AAD06383(transcript)|ensemblbacteria:jhp_0813(gene)|uniprotkb:Q9ZKX1(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UPbBnoNFXh2HaRteYammkH585nI85962 rogid:ez+JnUQfkR/StqSTsWeMQjUAnv085963 intact-crc:6ACF6A1C1CBE5D1E|rigid:+lBgJihHkS9dd3ojCB9sY/u3zU4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25122 uniprotkb:P56082 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-7496539|intact:MINT-159836|ensemblbacteria:AAD08175 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:atpg_helpy(display_long)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short)|uniprotkb:HP_1133(locus name)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319149|imex:IM-22256-137 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) mint:P56082|refseq:NP_207924.1|interpro:IPR035968|ensemblbacteria:AAD08175(transcript)|ensemblbacteria:HP_1133(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:WP_000002194.1|dip:DIP-3116N|uniprotkb:P56082(identity) psi-mi:"MI:0469"(intact) comment:mint function:"Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex"|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:gR8pc+z5yGmMlO9qI7b+Dv6OLVc85962 intact-crc:88834B4AFE9B345B|rigid:SF8CQKOWff/0Y6GsrwPibFk5+Lw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25122 uniprotkb:Q9ZKJ1 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-9262335|ensemblbacteria:AAD06522 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:q9zkj1_helpj(display_long)|uniprotkb:jhp_0944(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319167|imex:IM-22256-138 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) ensemblbacteria:AAD06522(transcript)|ensemblbacteria:jhp_0944(gene)|uniprotkb:Q9ZKJ1(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:1R4utf6FSlcyXPNx5xhZw0DvxCU85963 intact-crc:034BF30F7C44FA84|rigid:ZZDdzTkENZNfvbHemYmoNTQZBgs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O25129 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9262377|ensemblbacteria:AAD07440 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o25129_helpy(display_long)|uniprotkb:HP_0365(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319203|imex:IM-22256-140 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) ensemblbacteria:AAD07440(transcript)|ensemblbacteria:HP_0365(gene)|uniprotkb:O25129(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:1d9uGJd4Hx7R3qOXuc9u7atVUVY85962 intact-crc:BA495C14F53D67B0|rigid:p4k7zQUZ0wkULoSz5MyRlFtRv2E false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25129 uniprotkb:O25756 intact:EBI-9262377|ensemblbacteria:AAD07440 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:o25129_helpy(display_long)|uniprotkb:HP_0365(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319221|imex:IM-22256-141 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07440(transcript)|ensemblbacteria:HP_0365(gene)|uniprotkb:O25129(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1d9uGJd4Hx7R3qOXuc9u7atVUVY85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:481E06151CD8B149|rigid:EQTYofP7hqEVeD2rP0W1IEgZ8iA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25131 uniprotkb:O25131 intact:EBI-9260429|ensemblbacteria:AAD07436 intact:EBI-9260429|ensemblbacteria:AAD07436 psi-mi:o25131_helpy(display_long)|uniprotkb:HP_0367(locus name) psi-mi:o25131_helpy(display_long)|uniprotkb:HP_0367(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319275|imex:IM-22256-144 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000036594.1|refseq:NP_207165.1|ensemblbacteria:AAD07436(transcript)|ensemblbacteria:HP_0367(gene)|uniprotkb:O25131(identity) refseq:WP_000036594.1|refseq:NP_207165.1|ensemblbacteria:AAD07436(transcript)|ensemblbacteria:HP_0367(gene)|uniprotkb:O25131(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:vNcwqrbdOwZJqhozwAb0bBST2t085962 rogid:vNcwqrbdOwZJqhozwAb0bBST2t085962 intact-crc:1FF2289614737A24|rigid:2T9yQZHVG5B7RUqhvFYpXzDFCto false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25933 uniprotkb:O25129 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 intact:EBI-9262377|ensemblbacteria:AAD07440 psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:o25129_helpy(display_long)|uniprotkb:HP_0365(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319239|imex:IM-22256-142 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) ensemblbacteria:AAD07440(transcript)|ensemblbacteria:HP_0365(gene)|uniprotkb:O25129(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 rogid:1d9uGJd4Hx7R3qOXuc9u7atVUVY85962 intact-crc:88F811779C430684|rigid:/aJcDycIPfEbYJuJTBkq4fkVeKY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25975 uniprotkb:O25129 intact:EBI-7502487|intact:MINT-184955|ensemblbacteria:AAD08476 intact:EBI-9262377|ensemblbacteria:AAD07440 psi-mi:o25975_helpy(display_long)|uniprotkb:purU(gene name)|psi-mi:purU(display_short)|uniprotkb:"Formyl-FH(4) hydrolase"(gene name synonym)|uniprotkb:HP_1434(locus name) psi-mi:o25129_helpy(display_long)|uniprotkb:HP_0365(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319257|imex:IM-22256-143 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25975|refseq:WP_000889170.1|refseq:NP_208225.1|ensemblbacteria:AAD08476(transcript)|ensemblbacteria:HP_1434(gene)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|go:"GO:0008864"(formyltetrahydrofolate deformylase activity)|go:"GO:0016742"(hydroxymethyl-, formyl- and related transferase activity)|interpro:IPR002376(Formyl transferase, N-terminal)|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR004810(Formyltetrahydrofolate deformylase)|interpro:IPR036477|interpro:IPR041729|interpro:IPR044074|dip:DIP-3364N|uniprotkb:O25975(identity) ensemblbacteria:AAD07440(transcript)|ensemblbacteria:HP_0365(gene)|uniprotkb:O25129(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Lhr41VBvdwkNRr7sjPYuRgx9VBw85962 rogid:1d9uGJd4Hx7R3qOXuc9u7atVUVY85962 intact-crc:315CAC3DD94BBE55|rigid:QnXSSr9j76PKPdojKc59iFSwLHI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25152 uniprotkb:O25153 intact:EBI-7496390|intact:MINT-160594|ensemblbacteria:AAD07456 intact:EBI-6410665|ensemblbacteria:AAD07457 psi-mi:chew_helpy(display_long)|uniprotkb:cheW(gene name)|psi-mi:cheW(display_short)|uniprotkb:HP_0391(locus name) psi-mi:cheay_helpy(display_long)|uniprotkb:cheAY(gene name)|psi-mi:cheAY(display_short)|uniprotkb:HP_0392(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319329|imex:IM-22256-147 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25152|refseq:NP_207189.1|ensemblbacteria:AAD07456(transcript)|ensemblbacteria:HP_0391(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|interpro:IPR002545(CheW-like protein)|interpro:IPR036061|interpro:IPR039315|refseq:WP_000070768.1|dip:DIP-3415N|uniprotkb:O25152(identity) ensemblbacteria:AAD07457(transcript)|ensemblbacteria:HP_0392(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006935"(chemotaxis)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR004105(Signal transduction histidine kinase, subgroup, homodimeric)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR008207("Signal transduction histidine kinase, phosphotransfer (Hpt) region")|interpro:IPR011006(CheY-like)|interpro:IPR036061|interpro:IPR036097|interpro:IPR036641|interpro:IPR036890|interpro:IPR037006|mint:O25153|dip:DIP-3162N|refseq:WP_000342347.1|refseq:NP_207190.1|uniprotkb:O25153(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O7EjQcJzkk6XzC/nFhA90P9kgjQ85962 rogid:ZydEkHwnrAdGZl2zZCTDvJ+xQPs85962 intact-crc:F8BA0D657F1FEE79|rigid:d/qQalBvlsvLejmyEgdRJP44oMo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25134 uniprotkb:O25990 intact:EBI-7649244|ensemblbacteria:AAD07434|intact:MINT-183671 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o25134_helpy(display_long)|uniprotkb:HP_0370(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319293|imex:IM-22256-145 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25134|ensemblbacteria:AAD07434(transcript)|ensemblbacteria:HP_0370(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0004075"(biotin carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR004549(Acetyl-CoA carboxylase, biotin carboxylase)|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:NP_207168.1|refseq:WP_001045334.1|dip:DIP-3539N|uniprotkb:O25134(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:P/gGg8IPbMGyHGDgkh3jYCqw0Fw85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:1B2F314E7FACB2CC|rigid:B8birBh1NiYvuIcDC0Gzdq23AuE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25151 uniprotkb:O25151 intact:EBI-9262467|ensemblbacteria:AAD07455 intact:EBI-9262467|ensemblbacteria:AAD07455 psi-mi:tpx_helpy(display_long)|uniprotkb:Peroxiredoxin tpx(gene name synonym)|uniprotkb:Thioredoxin peroxidase(gene name synonym)|uniprotkb:tpx(gene name)|psi-mi:tpx(display_short)|uniprotkb:Thioredoxin-dependent peroxiredoxin(gene name synonym)|uniprotkb:HP_0390(locus name) psi-mi:tpx_helpy(display_long)|uniprotkb:Peroxiredoxin tpx(gene name synonym)|uniprotkb:Thioredoxin peroxidase(gene name synonym)|uniprotkb:tpx(gene name)|psi-mi:tpx(display_short)|uniprotkb:Thioredoxin-dependent peroxiredoxin(gene name synonym)|uniprotkb:HP_0390(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319311|imex:IM-22256-146 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001174648.1|interpro:IPR013766(Thioredoxin domain)|interpro:IPR002065(Antioxidant Tpx)|interpro:IPR013740(Redoxin)|interpro:IPR018219|refseq:NP_207188.1|interpro:IPR036249|ensemblbacteria:AAD07455(transcript)|ensemblbacteria:HP_0390(gene)|go:"GO:0008379"(thioredoxin peroxidase activity)|uniprotkb:O25151(identity) refseq:WP_001174648.1|interpro:IPR013766(Thioredoxin domain)|interpro:IPR002065(Antioxidant Tpx)|interpro:IPR013740(Redoxin)|interpro:IPR018219|refseq:NP_207188.1|interpro:IPR036249|ensemblbacteria:AAD07455(transcript)|ensemblbacteria:HP_0390(gene)|go:"GO:0008379"(thioredoxin peroxidase activity)|uniprotkb:O25151(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Z/+EQzxBfh1KGi2g+DKPI/A+wKE85962 rogid:Z/+EQzxBfh1KGi2g+DKPI/A+wKE85962 intact-crc:4FE47AA6D6FAADAE|rigid:idQutIuM8CEOigUEFquuc+u0st8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25152 uniprotkb:O25153 intact:EBI-7496390|intact:MINT-160594|ensemblbacteria:AAD07456 intact:EBI-6410665|ensemblbacteria:AAD07457 psi-mi:chew_helpy(display_long)|uniprotkb:cheW(gene name)|psi-mi:cheW(display_short)|uniprotkb:HP_0391(locus name) psi-mi:cheay_helpy(display_long)|uniprotkb:cheAY(gene name)|psi-mi:cheAY(display_short)|uniprotkb:HP_0392(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319383|imex:IM-22256-150 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25152|refseq:NP_207189.1|ensemblbacteria:AAD07456(transcript)|ensemblbacteria:HP_0391(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|interpro:IPR002545(CheW-like protein)|interpro:IPR036061|interpro:IPR039315|refseq:WP_000070768.1|dip:DIP-3415N|uniprotkb:O25152(identity) ensemblbacteria:AAD07457(transcript)|ensemblbacteria:HP_0392(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006935"(chemotaxis)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR004105(Signal transduction histidine kinase, subgroup, homodimeric)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR008207("Signal transduction histidine kinase, phosphotransfer (Hpt) region")|interpro:IPR011006(CheY-like)|interpro:IPR036061|interpro:IPR036097|interpro:IPR036641|interpro:IPR036890|interpro:IPR037006|mint:O25153|dip:DIP-3162N|refseq:WP_000342347.1|refseq:NP_207190.1|uniprotkb:O25153(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O7EjQcJzkk6XzC/nFhA90P9kgjQ85962 rogid:ZydEkHwnrAdGZl2zZCTDvJ+xQPs85962 intact-crc:427D6B143565135D|rigid:d/qQalBvlsvLejmyEgdRJP44oMo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25152 uniprotkb:O25347 intact:EBI-7496390|intact:MINT-160594|ensemblbacteria:AAD07456 intact:EBI-9262501|ensemblbacteria:AAD07690 psi-mi:chew_helpy(display_long)|uniprotkb:cheW(gene name)|psi-mi:cheW(display_short)|uniprotkb:HP_0391(locus name) psi-mi:o25347_helpy(display_long)|uniprotkb:HP_0630(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319347|imex:IM-22256-148 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25152|refseq:NP_207189.1|ensemblbacteria:AAD07456(transcript)|ensemblbacteria:HP_0391(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|interpro:IPR002545(CheW-like protein)|interpro:IPR036061|interpro:IPR039315|refseq:WP_000070768.1|dip:DIP-3415N|uniprotkb:O25152(identity) refseq:WP_000756697.1|interpro:IPR003680(Flavodoxin-like fold)|refseq:NP_207424.1|interpro:IPR029039|ensemblbacteria:AAD07690(transcript)|ensemblbacteria:HP_0630(gene)|uniprotkb:O25347(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O7EjQcJzkk6XzC/nFhA90P9kgjQ85962 rogid:9P8e4VSDZIi17dyMttO7MDi/W9U85962 intact-crc:059C5659E9E89DB4|rigid:C5eqDNAMZ2EBs61UdDAwlmhUAkM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25152 uniprotkb:O25606 intact:EBI-7496390|intact:MINT-160594|ensemblbacteria:AAD07456 intact:EBI-9260819|ensemblbacteria:AAD07996 psi-mi:chew_helpy(display_long)|uniprotkb:cheW(gene name)|psi-mi:cheW(display_short)|uniprotkb:HP_0391(locus name) psi-mi:o25606_helpy(display_long)|uniprotkb:HP_0952(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319365|imex:IM-22256-149 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25152|refseq:NP_207189.1|ensemblbacteria:AAD07456(transcript)|ensemblbacteria:HP_0391(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|interpro:IPR002545(CheW-like protein)|interpro:IPR036061|interpro:IPR039315|refseq:WP_000070768.1|dip:DIP-3415N|uniprotkb:O25152(identity) refseq:WP_000669256.1|interpro:IPR008136(CinA, C-terminal)|refseq:NP_207744.1|interpro:IPR036653|ensemblbacteria:AAD07996(transcript)|ensemblbacteria:HP_0952(gene)|uniprotkb:O25606(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O7EjQcJzkk6XzC/nFhA90P9kgjQ85962 rogid:s8fk+afTe93cG0B77Mk3AdeOLvk85962 intact-crc:7FB00229BCC9C5CA|rigid:2D6nP/v3HsLX3cLUXtxI5SkgNWs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25894 uniprotkb:O25153 intact:EBI-9262552|ensemblbacteria:AAD08390 intact:EBI-6410665|ensemblbacteria:AAD07457 psi-mi:o25894_helpy(display_long)|uniprotkb:HP_1336(locus name) psi-mi:cheay_helpy(display_long)|uniprotkb:cheAY(gene name)|psi-mi:cheAY(display_short)|uniprotkb:HP_0392(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319401|imex:IM-22256-151 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001062440.1|interpro:IPR001623(Heat shock protein DnaJ, N-terminal)|refseq:NP_208128.1|interpro:IPR036869|ensemblbacteria:AAD08390(transcript)|ensemblbacteria:HP_1336(gene)|uniprotkb:O25894(identity) ensemblbacteria:AAD07457(transcript)|ensemblbacteria:HP_0392(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006935"(chemotaxis)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR004105(Signal transduction histidine kinase, subgroup, homodimeric)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR008207("Signal transduction histidine kinase, phosphotransfer (Hpt) region")|interpro:IPR011006(CheY-like)|interpro:IPR036061|interpro:IPR036097|interpro:IPR036641|interpro:IPR036890|interpro:IPR037006|mint:O25153|dip:DIP-3162N|refseq:WP_000342347.1|refseq:NP_207190.1|uniprotkb:O25153(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UawjkOT4GgCR+KXn23VmmgFIMu085962 rogid:ZydEkHwnrAdGZl2zZCTDvJ+xQPs85962 intact-crc:165118D72769CF82|rigid:UUbbudTIhO/cYu+1g+bjoRlgKSk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25321 uniprotkb:O25154 intact:EBI-7577202|intact:MINT-187505|ensemblbacteria:AAD07662 intact:EBI-9260679|ensemblbacteria:AAD07458 psi-mi:o25321_helpy(display_long)|uniprotkb:HP_0599(locus name) psi-mi:chev3_helpy(display_long)|uniprotkb:cheV3(gene name)|psi-mi:cheV3(display_short)|uniprotkb:HP_0393(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319419|imex:IM-22256-152 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000467802.1|mint:O25321|refseq:NP_207394.1|ensemblbacteria:AAD07662(transcript)|ensemblbacteria:HP_0599(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016020"(membrane)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR025991|dip:DIP-3485N|uniprotkb:O25321(identity) refseq:WP_000818647.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:NP_207191.1|interpro:IPR036061|ensemblbacteria:AAD07458(transcript)|ensemblbacteria:HP_0393(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|uniprotkb:O25154(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YXk7N41WMjfNAWCxz3+ICouzcqo85962 rogid:4Ehxv3H/rtna3/+juonpRarYHAk85962 intact-crc:7AADE141712A2ACA|rigid:wjI4Actvyk8pRAJO1XCbLN8kNWw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25154 uniprotkb:O26083 intact:EBI-9260679|ensemblbacteria:AAD07458 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:chev3_helpy(display_long)|uniprotkb:cheV3(gene name)|psi-mi:cheV3(display_short)|uniprotkb:HP_0393(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319473|imex:IM-22256-155 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000818647.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:NP_207191.1|interpro:IPR036061|ensemblbacteria:AAD07458(transcript)|ensemblbacteria:HP_0393(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|uniprotkb:O25154(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4Ehxv3H/rtna3/+juonpRarYHAk85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:B60E042D9FE381A5|rigid:hN/l4FzkpSTSyUy+k5veBWwJsXU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25646 uniprotkb:O25154 intact:EBI-7570023|intact:MINT-171333|ensemblbacteria:AAD08045 intact:EBI-9260679|ensemblbacteria:AAD07458 psi-mi:o25646_helpy(display_long)|uniprotkb:HP_1000(locus name) psi-mi:chev3_helpy(display_long)|uniprotkb:cheV3(gene name)|psi-mi:cheV3(display_short)|uniprotkb:HP_0393(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319437|imex:IM-22256-153 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000587397.1|mint:O25646|refseq:NP_207791.1|ensemblbacteria:AAD08045(transcript)|ensemblbacteria:HP_1000(gene)|interpro:IPR009744(VirC1)|interpro:IPR027417|dip:DIP-3618N|uniprotkb:O25646(identity) refseq:WP_000818647.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:NP_207191.1|interpro:IPR036061|ensemblbacteria:AAD07458(transcript)|ensemblbacteria:HP_0393(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|uniprotkb:O25154(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:64wmsMWs+zFpo5ignH0wlMJA7z885962 rogid:4Ehxv3H/rtna3/+juonpRarYHAk85962 intact-crc:B31D7ED4ADD24ACA|rigid:Na+X8Zi/q31DY2EoXx7RJiU10jg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25743 uniprotkb:O25154 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 intact:EBI-9260679|ensemblbacteria:AAD07458 psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:chev3_helpy(display_long)|uniprotkb:cheV3(gene name)|psi-mi:cheV3(display_short)|uniprotkb:HP_0393(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319455|imex:IM-22256-154 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) refseq:WP_000818647.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:NP_207191.1|interpro:IPR036061|ensemblbacteria:AAD07458(transcript)|ensemblbacteria:HP_0393(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|uniprotkb:O25154(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 rogid:4Ehxv3H/rtna3/+juonpRarYHAk85962 intact-crc:DAF50242E44CA4BB|rigid:aXIZSh+8aMUN4lBl9smt1FjyMhs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25170 uniprotkb:O26083 intact:EBI-7535609|intact:MINT-171960|ensemblbacteria:AAD07481 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:y415_helpy(display_long)|uniprotkb:HP_0415(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319527|imex:IM-22256-158 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07481(transcript)|ensemblbacteria:HP_0415(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0055085"(transmembrane transport)|interpro:IPR006685(Mechanosensitive ion channel MscS)|interpro:IPR006686(Mechanosensitive ion channel MscS, conserved site)|interpro:IPR010920(Like-Sm ribonucleoprotein-related, core)|interpro:IPR011014(Mechanosensitive ion channel MscS, transmembrane-2)|interpro:IPR011066(Mechanosensitive ion channel MscS, C-terminal)|interpro:IPR023408|dip:DIP-3304N|mint:O25170|refseq:NP_207213.1|refseq:WP_001238108.1|uniprotkb:O25170(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+zpsxPIQFqkaWkySHftOOVY1Gss85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:830B47905BC03C61|rigid:QfZMn1M5YEGixWJXJToPCCLw47Q false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25162 uniprotkb:Q9ZN16 intact:EBI-7501036|intact:MINT-179500|ensemblbacteria:AAD07476 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:o25162_helpy(display_long)|uniprotkb:HP_0406(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319509|imex:IM-22256-157 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25162|refseq:WP_000352085.1|refseq:NP_207204.1|ensemblbacteria:AAD07476(transcript)|ensemblbacteria:HP_0406(gene)|interpro:IPR025002|dip:DIP-3390N|uniprotkb:O25162(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:hxokXA1Q5lYK2z31l1EwRPmAZrc85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:3301AD89BB86A711|rigid:Mx7Zgp1NvUBLc4keP5M+IY8rms0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25162 uniprotkb:O25089 intact:EBI-7501036|intact:MINT-179500|ensemblbacteria:AAD07476 intact:EBI-9262630|ensemblbacteria:AAD07390 psi-mi:o25162_helpy(display_long)|uniprotkb:HP_0406(locus name) psi-mi:chpep_helpy(display_long)|uniprotkb:chePep(gene name)|psi-mi:chePep(display_short)|uniprotkb:HP_0322(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319491|imex:IM-22256-156 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25162|refseq:WP_000352085.1|refseq:NP_207204.1|ensemblbacteria:AAD07476(transcript)|ensemblbacteria:HP_0406(gene)|interpro:IPR025002|dip:DIP-3390N|uniprotkb:O25162(identity) refseq:WP_000782061.1|refseq:NP_207120.1|ensemblbacteria:AAD07390(transcript)|ensemblbacteria:HP_0322(gene)|go:"GO:0005737"(cytoplasm)|uniprotkb:O25089(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:hxokXA1Q5lYK2z31l1EwRPmAZrc85962 rogid:spR9Pm2SKxo2HiZSZF+lM0o1wMU85962 intact-crc:5DDE2A759917AD7B|rigid:Qc8CtPn7sExFy6AktdaAOmynkO8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25242 uniprotkb:O25172 intact:EBI-7532786|intact:MINT-176339|ensemblbacteria:AAD07565 intact:EBI-9262675|ensemblbacteria:AAD07489 psi-mi:dpo3b_helpy(display_long)|uniprotkb:Beta-clamp processivity factor(gene name synonym)|uniprotkb:DNA polymerase III beta sliding clamp subunit(gene name synonym)|uniprotkb:DNA polymerase III subunit beta(gene name synonym)|uniprotkb:HP_0500(locus name)|uniprotkb:dnaN(gene name)|psi-mi:dnaN(display_short) psi-mi:o25172_helpy(display_long)|uniprotkb:HP_0418(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319545|imex:IM-22256-159 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25242|refseq:WP_000704186.1|refseq:NP_207297.1|ensemblbacteria:AAD07565(transcript)|ensemblbacteria:HP_0500(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006271"(DNA strand elongation involved in DNA replication)|go:"GO:0008408"(3'-5' exonuclease activity)|go:"GO:0009360"(DNA polymerase III complex)|interpro:IPR001001(DNA polymerase III, beta chain)|interpro:IPR022634|interpro:IPR022635|interpro:IPR022637|rcsb pdb:4RKI|rcsb pdb:4S3I|rcsb pdb:5FRQ|rcsb pdb:5FVE|rcsb pdb:5FXT|rcsb pdb:5G48|rcsb pdb:5G4Q|dip:DIP-3288N|uniprotkb:O25242(identity) refseq:WP_001236552.1|refseq:NP_207216.1|ensemblbacteria:AAD07489(transcript)|ensemblbacteria:HP_0418(gene)|uniprotkb:O25172(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:CQBMfETiMgCTU87/qpJz+NKtpPQ85962 rogid:T8+oNcscBN0byNIAncwJoENu/uM85962 intact-crc:51EAB6483D5AF458|rigid:V4bUvpcAYSXImCmtl+egXOhd+QU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25176 uniprotkb:O25272 intact:EBI-7524588|intact:MINT-161428|ensemblbacteria:AAD07486 intact:EBI-7651076|ensemblbacteria:AAD07605|intact:MINT-161915 psi-mi:o25176_helpy(display_long)|uniprotkb:HP_0422(locus name) psi-mi:o25272_helpy(display_long)|uniprotkb:HP_0539(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319563|imex:IM-22256-160 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25176|refseq:WP_001158562.1|refseq:NP_207220.1|ensemblbacteria:AAD07486(transcript)|ensemblbacteria:HP_0422(gene)|go:"GO:0006527"(arginine catabolic process)|go:"GO:0008295"(spermidine biosynthetic process)|go:"GO:0008792"(arginine decarboxylase activity)|go:"GO:0033388"(putrescine biosynthetic process from arginine)|go:"GO:0046872"(metal ion binding)|interpro:IPR000183(Orn/DAP/Arg decarboxylase 2)|interpro:IPR002985(Arginine decarboxylase)|interpro:IPR009006(Alanine racemase/group IV decarboxylase, C-terminal)|interpro:IPR022644|interpro:IPR029066|interpro:IPR040634|interpro:IPR041128|dip:DIP-3228N|uniprotkb:O25176(identity) mint:O25272|ensemblbacteria:AAD07605(transcript)|ensemblbacteria:HP_0539(gene)|rcsb pdb:3ZCI|rcsb pdb:3ZCJ|rcsb pdb:4CII|rcsb pdb:4X5U|refseq:NP_207335.1|refseq:WP_000855299.1|dip:DIP-3544N|uniprotkb:O25272(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QkpLHGqSgKz/B8/0x/aqhn0C1os85962 rogid:nQvUcaMFjvL0wOk4hyIagpwGQ5s85962 intact-crc:8A2AFAAE56ABE197|rigid:YuGV1i0dwmf7pctzsBrGDnXW2/0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25185 uniprotkb:O24972 intact:EBI-7556532|intact:MINT-166764|ensemblbacteria:AAD07506 intact:EBI-9260411|uniprotkb:O24971|ensemblbacteria:AAD07233|ensemblbacteria:AAD07239 psi-mi:o25185_helpy(display_long)|uniprotkb:HP_0435(locus name) psi-mi:arss_helpy(display_long)|uniprotkb:arsS(gene name)|psi-mi:arsS(display_short)|uniprotkb:HP_0164/HP_0165(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319617|imex:IM-22256-163 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25185|ensemblbacteria:AAD07506(transcript)|ensemblbacteria:HP_0435(gene)|go:"GO:0004386"(helicase activity)|interpro:IPR041677|interpro:IPR027417|dip:DIP-3394N|uniprotkb:O25185(identity) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR036097|interpro:IPR036890|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|ensemblbacteria:AAD07233(transcript)|ensemblbacteria:AAD07239(transcript)|ensemblbacteria:HP_0164(gene)|ensemblbacteria:HP_0165(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24971(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2020/01/08 rogid:Wo8lRDnMrBLGNLrCPjLFcu6Aemc85962 rogid:iGm8PnU59Azwe5NrINkshU2pVEA85962 intact-crc:B5FB0262F348CDC2|rigid:xL7zZ2/ky47TFULcll0Vufqpw8s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25176 uniprotkb:O34461 intact:EBI-7524588|intact:MINT-161428|ensemblbacteria:AAD07486 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:o25176_helpy(display_long)|uniprotkb:HP_0422(locus name) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319581|imex:IM-22256-161 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25176|refseq:WP_001158562.1|refseq:NP_207220.1|ensemblbacteria:AAD07486(transcript)|ensemblbacteria:HP_0422(gene)|go:"GO:0006527"(arginine catabolic process)|go:"GO:0008295"(spermidine biosynthetic process)|go:"GO:0008792"(arginine decarboxylase activity)|go:"GO:0033388"(putrescine biosynthetic process from arginine)|go:"GO:0046872"(metal ion binding)|interpro:IPR000183(Orn/DAP/Arg decarboxylase 2)|interpro:IPR002985(Arginine decarboxylase)|interpro:IPR009006(Alanine racemase/group IV decarboxylase, C-terminal)|interpro:IPR022644|interpro:IPR029066|interpro:IPR040634|interpro:IPR041128|dip:DIP-3228N|uniprotkb:O25176(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QkpLHGqSgKz/B8/0x/aqhn0C1os85962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:148049B6F73ECB8D|rigid:15oRKOGhspJZsKTADnr3WUvVEWc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O25183 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-7675579|ensemblbacteria:AAD07504|intact:MINT-173265 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o25183_helpy(display_long)|uniprotkb:HP_0433(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319599|imex:IM-22256-162 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) ensemblbacteria:AAD07504(transcript)|ensemblbacteria:HP_0433(gene)|mint:O25183|dip:DIP-3523N|uniprotkb:O25183(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:lY6gBrDP8FArsY7khgS0jtKDv+Y85962 intact-crc:2B72BBEFF7C63892|rigid:NhxsK5G1bxpY02UXp/Klifo8iEU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25185 uniprotkb:O25423 intact:EBI-7556532|intact:MINT-166764|ensemblbacteria:AAD07506 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o25185_helpy(display_long)|uniprotkb:HP_0435(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319635|imex:IM-22256-164 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25185|ensemblbacteria:AAD07506(transcript)|ensemblbacteria:HP_0435(gene)|go:"GO:0004386"(helicase activity)|interpro:IPR041677|interpro:IPR027417|dip:DIP-3394N|uniprotkb:O25185(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wo8lRDnMrBLGNLrCPjLFcu6Aemc85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:2F97C2254BBC99AF|rigid:NodMnYLHK0GEQXZFHEfCSPZLeOA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25185 uniprotkb:O25721 intact:EBI-7556532|intact:MINT-166764|ensemblbacteria:AAD07506 intact:EBI-9262771|ensemblbacteria:AAD08136 psi-mi:o25185_helpy(display_long)|uniprotkb:HP_0435(locus name) psi-mi:o25721_helpy(display_long)|uniprotkb:HP_1089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319653|imex:IM-22256-165 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25185|ensemblbacteria:AAD07506(transcript)|ensemblbacteria:HP_0435(gene)|go:"GO:0004386"(helicase activity)|interpro:IPR041677|interpro:IPR027417|dip:DIP-3394N|uniprotkb:O25185(identity) refseq:WP_001047444.1|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR027417|refseq:NP_207880.1|interpro:IPR038726|ensemblbacteria:AAD08136(transcript)|ensemblbacteria:HP_1089(gene)|uniprotkb:O25721(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wo8lRDnMrBLGNLrCPjLFcu6Aemc85962 rogid:cj4UolBD2x+jJMZNF8agkRv6zTQ85962 intact-crc:68660CBA3C448377|rigid:4v5ndM802Qe6TZYfefhu+6+Ty+0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25187 uniprotkb:P55834 intact:EBI-7513590|intact:MINT-177639|ensemblbacteria:AAD07508 intact:EBI-7696366|ensemblbacteria:AAD08245|intact:MINT-185711 psi-mi:o25187_helpy(display_long)|uniprotkb:HP_0439(locus name) psi-mi:rl7_helpy(display_long)|uniprotkb:HP_1199(locus name)|uniprotkb:rplL(gene name)|psi-mi:rplL(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319707|imex:IM-22256-168 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000044730.1|mint:O25187|refseq:NP_207237.1|ensemblbacteria:AAD07508(transcript)|ensemblbacteria:HP_0439(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR007430(VirB8)|interpro:IPR032710|dip:DIP-3078N|uniprotkb:O25187(identity) ensemblbacteria:AAD08245(transcript)|ensemblbacteria:HP_1199(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR000206(Ribosomal protein L7/L12)|interpro:IPR008932(Ribosomal protein L7/L12, oligomerisation)|interpro:IPR013823(Ribosomal protein L7/L12, C-terminal)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR036235|mint:P55834|refseq:NP_207990.1|refseq:WP_001018245.1|dip:DIP-3668N|uniprotkb:P55834(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gBjcvs1QEDsVC2W2FMsqCwTIlVo85962 rogid:QMsXDZxaNrKxgGuZGkLrKdz1lkk85962 intact-crc:2FECA780D26294C7|rigid:lb4Nj9vHRSRJcGu1uqywoqgmXJc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25187 uniprotkb:O25743 intact:EBI-7513590|intact:MINT-177639|ensemblbacteria:AAD07508 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 psi-mi:o25187_helpy(display_long)|uniprotkb:HP_0439(locus name) psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319671|imex:IM-22256-166 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000044730.1|mint:O25187|refseq:NP_207237.1|ensemblbacteria:AAD07508(transcript)|ensemblbacteria:HP_0439(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR007430(VirB8)|interpro:IPR032710|dip:DIP-3078N|uniprotkb:O25187(identity) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gBjcvs1QEDsVC2W2FMsqCwTIlVo85962 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 intact-crc:231A9B43DEF5A581|rigid:XafhDbM5ZNGUhVSnV+NZ6NvuZpE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25187 uniprotkb:O26083 intact:EBI-7513590|intact:MINT-177639|ensemblbacteria:AAD07508 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:o25187_helpy(display_long)|uniprotkb:HP_0439(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319689|imex:IM-22256-167 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000044730.1|mint:O25187|refseq:NP_207237.1|ensemblbacteria:AAD07508(transcript)|ensemblbacteria:HP_0439(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR007430(VirB8)|interpro:IPR032710|dip:DIP-3078N|uniprotkb:O25187(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gBjcvs1QEDsVC2W2FMsqCwTIlVo85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:4FE19D2CA55A809F|rigid:MJNpqSC7rAUHDG2RwcnHBHmpWDA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:O24980 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-7552025|intact:MINT-165751|ensemblbacteria:AAD07248 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:psei_helpy(display_long)|uniprotkb:pseI(gene name)|psi-mi:pseI(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein I(gene name synonym)|uniprotkb:HP_0178(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319761|imex:IM-22256-171 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_000941291.1|mint:O24980|refseq:NP_206977.1|ensemblbacteria:AAD07248(transcript)|ensemblbacteria:HP_0178(gene)|go:"GO:0016051"(carbohydrate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0047444"(N-acylneuraminate-9-phosphate synthase activity)|go:"GO:0070085"(glycosylation)|interpro:IPR006190(Antifreeze-like/N-acetylneuraminic acid synthase C-terminal)|interpro:IPR013132(N-acetylneuraminic acid synthase, N-terminal)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013974(SAF domain)|interpro:IPR020030|interpro:IPR036732|dip:DIP-3369N|uniprotkb:O24980(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:uZp/YwItniAjhnfvNYjPS7d1M+U85962 intact-crc:1BF889C06D7794FC|rigid:8MmKKhRaJ2S+84/VIUYw3YFoD0o false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZKK9 uniprotkb:O25192 intact:EBI-9262831|ensemblbacteria:AAD06503 intact:EBI-9262837|ensemblbacteria:AAD07511 psi-mi:q9zkk9_helpj(display_long)|uniprotkb:jhp_0926(locus name) psi-mi:o25192_helpy(display_long)|uniprotkb:HP_0444(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319725|imex:IM-22256-169 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001061518.1|interpro:IPR013610(Region of unknown function DUF1738)|ensemblbacteria:AAD06503(transcript)|ensemblbacteria:jhp_0926(gene)|uniprotkb:Q9ZKK9(identity) refseq:WP_000323332.1|refseq:NP_207242.1|ensemblbacteria:AAD07511(transcript)|ensemblbacteria:HP_0444(gene)|uniprotkb:O25192(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:dTuYLMMyPmCU+EDV95UFdWd/jB485963 rogid:qoKe2Bcq+r+zVu9mtDYvri8iJZ885962 intact-crc:96A8E5EC1A32560E|rigid:ZaTrkmchC+jyfeY4UHXZz75JonQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25423 uniprotkb:O25207 intact:EBI-9260274|ensemblbacteria:AAD07777 intact:EBI-9262855|ensemblbacteria:AAD07537 psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:o25207_helpy(display_long)|uniprotkb:HP_0460(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319743|imex:IM-22256-170 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) ensemblbacteria:AAD07537(transcript)|ensemblbacteria:HP_0460(gene)|uniprotkb:O25207(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 rogid:uYzF+bfesHFG7oGtd+x5ChxcYRI85962 intact-crc:708125CCD7DAA033|rigid:mKzG43aIWPfV8lShwVnSYlulipc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:O25186 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319779|imex:IM-22256-172 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 intact-crc:E677969B20C84F01|rigid:q8JzA84aYXPIgxZJnSkc5xJNk70 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:O25664 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319797|imex:IM-22256-173 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:A11F70FA24B9D127|rigid:2HwgHGXh3eY9g2oyWkCFwvSN9JQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:O25756 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319815|imex:IM-22256-174 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:B1EA6C3BF6634FA3|rigid:6aEy7TjHry8TvHK67nijGC45tJc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:O25852 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319833|imex:IM-22256-175 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 intact-crc:BD517FCE0D0F80DD|rigid:w1coROhZ5aYvo+IGPQh2USU4Ays false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:Q9ZL79 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9262981|ensemblbacteria:AAD06276 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:q9zl79_helpj(display_long)|uniprotkb:jhp_0701(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319887|imex:IM-22256-178 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) interpro:IPR005358(Protein of unknown function UPF0153)|ensemblbacteria:AAD06276(transcript)|ensemblbacteria:jhp_0701(gene)|uniprotkb:Q9ZL79(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:lF/xSeC5ME9IUHouS6yOLLg1grE85963 intact-crc:FC34EE4C970F4992|rigid:m9ri8DUJ+HFSB5FFviPFB17LMa0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:P56132 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319851|imex:IM-22256-176 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 intact-crc:E51CAA011745BC59|rigid:GC//YwZo3/23oYrZDqOmDI2Im1M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:Q9ZKJ9 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319869|imex:IM-22256-177 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:8FED1C74310EB0B9|rigid:y6S8xMWdM+1ZvEyHy9pUetcekeE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:Q9ZN32 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319905|imex:IM-22256-179 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:3C03F9A1E88072C2|rigid:M6b1jWObhnQx+eeH+lFpsGW0dUU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25225 uniprotkb:O25488 intact:EBI-7665004|ensemblbacteria:AAD07546|intact:MINT-4074340 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:bipa_helpy(display_long)|uniprotkb:bipA(gene name)|psi-mi:bipA(display_short)|uniprotkb:HP_0480(locus name)|uniprotkb:GTP-binding protein BipA(gene name synonym) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319923|imex:IM-22256-180 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006298(GTP-binding protein TypA)|ensemblbacteria:AAD07546(transcript)|ensemblbacteria:HP_0480(gene)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0000049"(tRNA binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0019843"(rRNA binding)|go:"GO:0043022"(ribosome binding)|go:"GO:1990904"(ribonucleoprotein complex)|mint:O25225|interpro:IPR035647|interpro:IPR035651|refseq:WP_000790221.1|interpro:IPR031157|interpro:IPR027417|refseq:NP_207278.1|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR042116|uniprotkb:O25225(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Not known; probably interacts with the ribosomes in a GTP dependent manner - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nl9TqPG2++w1IHcg+drb1xCMYyY85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:65CFE55E99715EA6|rigid:Ujw20GbFMZo4Viie1WDnmw7hQjE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25225 uniprotkb:O34461 intact:EBI-7665004|ensemblbacteria:AAD07546|intact:MINT-4074340 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:bipa_helpy(display_long)|uniprotkb:bipA(gene name)|psi-mi:bipA(display_short)|uniprotkb:HP_0480(locus name)|uniprotkb:GTP-binding protein BipA(gene name synonym) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319977|imex:IM-22256-183 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006298(GTP-binding protein TypA)|ensemblbacteria:AAD07546(transcript)|ensemblbacteria:HP_0480(gene)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0000049"(tRNA binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0019843"(rRNA binding)|go:"GO:0043022"(ribosome binding)|go:"GO:1990904"(ribonucleoprotein complex)|mint:O25225|interpro:IPR035647|interpro:IPR035651|refseq:WP_000790221.1|interpro:IPR031157|interpro:IPR027417|refseq:NP_207278.1|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR042116|uniprotkb:O25225(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Not known; probably interacts with the ribosomes in a GTP dependent manner comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nl9TqPG2++w1IHcg+drb1xCMYyY85962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:6E3760C37D666E07|rigid:SsUSnhaI/fk9AzAf0+EfAQoLTjQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25595 uniprotkb:O25225 intact:EBI-7506967|intact:MINT-4059337|ensemblbacteria:AAD07986 intact:EBI-7665004|ensemblbacteria:AAD07546|intact:MINT-4074340 psi-mi:alr_helpy(display_long)|uniprotkb:alr(gene name)|psi-mi:alr(display_short)|uniprotkb:HP_0941(locus name) psi-mi:bipa_helpy(display_long)|uniprotkb:bipA(gene name)|psi-mi:bipA(display_short)|uniprotkb:HP_0480(locus name)|uniprotkb:GTP-binding protein BipA(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319941|imex:IM-22256-181 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25595|refseq:WP_000917915.1|refseq:NP_207733.1|interpro:IPR009006(Alanine racemase/group IV decarboxylase, C-terminal)|interpro:IPR020622|interpro:IPR000821(Alanine racemase region)|interpro:IPR001608(Alanine racemase, N-terminal)|interpro:IPR011079(Alanine racemase, C-terminal)|interpro:IPR029066|ensemblbacteria:AAD07986(transcript)|ensemblbacteria:HP_0941(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008784"(alanine racemase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0030632"(D-alanine biosynthetic process)|uniprotkb:O25595(identity) interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006298(GTP-binding protein TypA)|ensemblbacteria:AAD07546(transcript)|ensemblbacteria:HP_0480(gene)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0000049"(tRNA binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0019843"(rRNA binding)|go:"GO:0043022"(ribosome binding)|go:"GO:1990904"(ribonucleoprotein complex)|mint:O25225|interpro:IPR035647|interpro:IPR035651|refseq:WP_000790221.1|interpro:IPR031157|interpro:IPR027417|refseq:NP_207278.1|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR042116|uniprotkb:O25225(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Provides the D-alanine required for cell wall biosynthesis comment:mint|function:Not known; probably interacts with the ribosomes in a GTP dependent manner figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RjfkZsYZh9kbXeqTnUNxkZcYDGM85962 rogid:nl9TqPG2++w1IHcg+drb1xCMYyY85962 intact-crc:94E7D7F19191C67A|rigid:elXwsHxy+VchCvUVM0uRgg+zdG8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25225 uniprotkb:O25610 intact:EBI-7665004|ensemblbacteria:AAD07546|intact:MINT-4074340 intact:EBI-9263045|ensemblbacteria:AAD07999 psi-mi:bipa_helpy(display_long)|uniprotkb:bipA(gene name)|psi-mi:bipA(display_short)|uniprotkb:HP_0480(locus name)|uniprotkb:GTP-binding protein BipA(gene name synonym) psi-mi:y956_helpy(display_long)|uniprotkb:RNA pseudouridylate synthase(gene name synonym)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:HP_0956(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319959|imex:IM-22256-182 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006298(GTP-binding protein TypA)|ensemblbacteria:AAD07546(transcript)|ensemblbacteria:HP_0480(gene)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0000049"(tRNA binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0019843"(rRNA binding)|go:"GO:0043022"(ribosome binding)|go:"GO:1990904"(ribonucleoprotein complex)|mint:O25225|interpro:IPR035647|interpro:IPR035651|refseq:WP_000790221.1|interpro:IPR031157|interpro:IPR027417|refseq:NP_207278.1|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR042116|uniprotkb:O25225(identity) refseq:WP_000409617.1|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:NP_207748.1|ensemblbacteria:AAD07999(transcript)|ensemblbacteria:HP_0956(gene)|go:"GO:0000455"(enzyme-directed rRNA pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|uniprotkb:O25610(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Not known; probably interacts with the ribosomes in a GTP dependent manner - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nl9TqPG2++w1IHcg+drb1xCMYyY85962 rogid:I9CDLgzCdYoEonESpJtaMgKOzLs85962 intact-crc:DF1430BA3D7CA852|rigid:RWu9xXdY/zFK8LOnW2S0ektZ2Lw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25228 uniprotkb:O25228 intact:EBI-9263078|ensemblbacteria:AAD07553 intact:EBI-9263078|ensemblbacteria:AAD07553 psi-mi:o25228_helpy(display_long)|uniprotkb:HP_0484(locus name) psi-mi:o25228_helpy(display_long)|uniprotkb:HP_0484(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9319995|imex:IM-22256-184 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000482941.1|refseq:NP_207281.1|ensemblbacteria:AAD07553(transcript)|ensemblbacteria:HP_0484(gene)|uniprotkb:O25228(identity) refseq:WP_000482941.1|refseq:NP_207281.1|ensemblbacteria:AAD07553(transcript)|ensemblbacteria:HP_0484(gene)|uniprotkb:O25228(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DJqwHbhX2V28W4W+DPmGl7KrhnM85962 rogid:DJqwHbhX2V28W4W+DPmGl7KrhnM85962 intact-crc:15715D91F242C3F3|rigid:4tNz+Pw3uB1bdwhvIUkuOV5dqPk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25615 uniprotkb:O25228 intact:EBI-7493929|intact:MINT-161937|ensemblbacteria:AAD08009 intact:EBI-9263078|ensemblbacteria:AAD07553 psi-mi:o25615_helpy(display_long)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short)|uniprotkb:HP_0962(locus name) psi-mi:o25228_helpy(display_long)|uniprotkb:HP_0484(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320013|imex:IM-22256-185 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25615|refseq:NP_207754.1|ensemblbacteria:AAD08009(transcript)|ensemblbacteria:HP_0962(gene)|go:"GO:0000035"(acyl binding)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005829"(cytosol)|go:"GO:0009245"(lipid A biosynthetic process)|interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR009081(Acyl carrier protein-like)|interpro:IPR036736|refseq:WP_001862971.1|dip:DIP-3606N|uniprotkb:O25615(identity) refseq:WP_000482941.1|refseq:NP_207281.1|ensemblbacteria:AAD07553(transcript)|ensemblbacteria:HP_0484(gene)|uniprotkb:O25228(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5bZhVpT0ZrohWG6bMoIe01MRudk85962 rogid:DJqwHbhX2V28W4W+DPmGl7KrhnM85962 intact-crc:835FD66D425E93BB|rigid:JTiDwLufelHl9CqinT65w+USOPU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25236 uniprotkb:P56047 intact:EBI-7570321|intact:MINT-182231|ensemblbacteria:AAD07560 intact:EBI-7532011|intact:MINT-170202|ensemblbacteria:AAD08353 psi-mi:murd_helpy(display_long)|uniprotkb:murD(gene name)|psi-mi:murD(display_short)|uniprotkb:HP_0494(locus name)|uniprotkb:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase(gene name synonym)|uniprotkb:D-glutamic acid-adding enzyme(gene name synonym) psi-mi:rl22_helpy(display_long)|uniprotkb:rplV(gene name)|psi-mi:rplV(display_short)|uniprotkb:HP_1314(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320031|imex:IM-22256-186 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000703484.1|mint:O25236|refseq:NP_207291.1|ensemblbacteria:AAD07560(transcript)|ensemblbacteria:HP_0494(gene)|go:"GO:0004326"(tetrahydrofolylpolyglutamate synthase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008764"(UDP-N-acetylmuramoylalanine-D-glutamate ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|interpro:IPR004101(Mur ligase, C-terminal)|interpro:IPR005762(UDP-N-acetylmuramoylalanine-D-glutamate ligase)|interpro:IPR013221(Mur ligase, central)|interpro:IPR018109|interpro:IPR036565|interpro:IPR036615|dip:DIP-3766N|uniprotkb:O25236(identity) mint:P56047|refseq:NP_208106.1|refseq:WP_000030375.1|ensemblbacteria:AAD08353(transcript)|ensemblbacteria:HP_1314(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0042255"(ribosome assembly)|interpro:IPR001063(Ribosomal protein L22/L17)|interpro:IPR005727(Ribosomal protein L22, bacterial-type)|interpro:IPR018260|interpro:IPR036394|dip:DIP-3280N|uniprotkb:P56047(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)" comment:mint|function:This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome|function:The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LuXBe5YFfXMICoEwVvBVh5Cf5ok85962 rogid:y71mNIbASFxxM0Jz4gIfxIvBD0E85962 intact-crc:009F7333F2C10F8E|rigid:cykkNJbD77SArlQ6RAjjLGf93Zs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25237 uniprotkb:O25726 intact:EBI-7571766|intact:MINT-165537|ensemblbacteria:AAD07569 intact:EBI-9263129|ensemblbacteria:AAD08147 psi-mi:y495_helpy(display_long)|uniprotkb:HP_0495(locus name) psi-mi:o25726_helpy(display_long)|uniprotkb:HP_1094(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320049|imex:IM-22256-187 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25237|refseq:WP_001138777.1|refseq:NP_207292.1|ensemblbacteria:AAD07569(transcript)|ensemblbacteria:HP_0495(gene)|interpro:IPR007454(Protein of unknown function DUF493)|interpro:IPR027471|rcsb pdb:2H9Z|rcsb pdb:2JOQ|dip:DIP-3435N|uniprotkb:O25237(identity) refseq:WP_010875592.1|refseq:NP_207885.1|ensemblbacteria:AAD08147(transcript)|ensemblbacteria:HP_1094(gene)|uniprotkb:O25726(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RbOYqFgStMZMNCRBjS0Z56r2KUk85962 rogid:0zJ77Ponsbl4Xf7C20HGyco/c9M85962 intact-crc:6664721C5A2221DB|rigid:sjPogD7twcYWh3ZW8sFesB1PZtg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25237 uniprotkb:P56132 intact:EBI-7571766|intact:MINT-165537|ensemblbacteria:AAD07569 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 psi-mi:y495_helpy(display_long)|uniprotkb:HP_0495(locus name) psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320103|imex:IM-22256-190 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25237|refseq:WP_001138777.1|refseq:NP_207292.1|ensemblbacteria:AAD07569(transcript)|ensemblbacteria:HP_0495(gene)|interpro:IPR007454(Protein of unknown function DUF493)|interpro:IPR027471|rcsb pdb:2H9Z|rcsb pdb:2JOQ|dip:DIP-3435N|uniprotkb:O25237(identity) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RbOYqFgStMZMNCRBjS0Z56r2KUk85962 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 intact-crc:6AEA22D530AD687E|rigid:a5sW1JMUQv+fen6scvx2T3wyuIs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25237 uniprotkb:O25940 intact:EBI-7571766|intact:MINT-165537|ensemblbacteria:AAD07569 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 psi-mi:y495_helpy(display_long)|uniprotkb:HP_0495(locus name) psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320067|imex:IM-22256-188 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25237|refseq:WP_001138777.1|refseq:NP_207292.1|ensemblbacteria:AAD07569(transcript)|ensemblbacteria:HP_0495(gene)|interpro:IPR007454(Protein of unknown function DUF493)|interpro:IPR027471|rcsb pdb:2H9Z|rcsb pdb:2JOQ|dip:DIP-3435N|uniprotkb:O25237(identity) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RbOYqFgStMZMNCRBjS0Z56r2KUk85962 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 intact-crc:BFC3694C2496009A|rigid:b15dJU2N/VYBNjIE5nKRtadpiEQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25237 uniprotkb:O25965 intact:EBI-7571766|intact:MINT-165537|ensemblbacteria:AAD07569 intact:EBI-7631463|ensemblbacteria:AAD08463|intact:MINT-169065 psi-mi:y495_helpy(display_long)|uniprotkb:HP_0495(locus name) psi-mi:o25965_helpy(display_long)|uniprotkb:HP_1421(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320085|imex:IM-22256-189 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25237|refseq:WP_001138777.1|refseq:NP_207292.1|ensemblbacteria:AAD07569(transcript)|ensemblbacteria:HP_0495(gene)|interpro:IPR007454(Protein of unknown function DUF493)|interpro:IPR027471|rcsb pdb:2H9Z|rcsb pdb:2JOQ|dip:DIP-3435N|uniprotkb:O25237(identity) ensemblbacteria:AAD08463(transcript)|ensemblbacteria:HP_1421(gene)|interpro:IPR001482(Type II secretion system protein E)|interpro:IPR027417|mint:O25965|refseq:WP_000854872.1|refseq:NP_208212.1|dip:DIP-3731N|uniprotkb:O25965(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RbOYqFgStMZMNCRBjS0Z56r2KUk85962 rogid:gRZd8B4YMHshw7qZZacp68EYNwU85962 intact-crc:09968F8CFA4D71EA|rigid:OQK4R7DeHRdkbyH2HKKKhmGN0Hk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25237 uniprotkb:Q9ZKJ9 intact:EBI-7571766|intact:MINT-165537|ensemblbacteria:AAD07569 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:y495_helpy(display_long)|uniprotkb:HP_0495(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320121|imex:IM-22256-191 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25237|refseq:WP_001138777.1|refseq:NP_207292.1|ensemblbacteria:AAD07569(transcript)|ensemblbacteria:HP_0495(gene)|interpro:IPR007454(Protein of unknown function DUF493)|interpro:IPR027471|rcsb pdb:2H9Z|rcsb pdb:2JOQ|dip:DIP-3435N|uniprotkb:O25237(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RbOYqFgStMZMNCRBjS0Z56r2KUk85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:001944A016E6649E|rigid:mAhKJbudh44B4GyIhnOnpLNVoRw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25242 uniprotkb:O25172 intact:EBI-7532786|intact:MINT-176339|ensemblbacteria:AAD07565 intact:EBI-9262675|ensemblbacteria:AAD07489 psi-mi:dpo3b_helpy(display_long)|uniprotkb:Beta-clamp processivity factor(gene name synonym)|uniprotkb:DNA polymerase III beta sliding clamp subunit(gene name synonym)|uniprotkb:DNA polymerase III subunit beta(gene name synonym)|uniprotkb:HP_0500(locus name)|uniprotkb:dnaN(gene name)|psi-mi:dnaN(display_short) psi-mi:o25172_helpy(display_long)|uniprotkb:HP_0418(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320139|imex:IM-22256-192 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25242|refseq:WP_000704186.1|refseq:NP_207297.1|ensemblbacteria:AAD07565(transcript)|ensemblbacteria:HP_0500(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006271"(DNA strand elongation involved in DNA replication)|go:"GO:0008408"(3'-5' exonuclease activity)|go:"GO:0009360"(DNA polymerase III complex)|interpro:IPR001001(DNA polymerase III, beta chain)|interpro:IPR022634|interpro:IPR022635|interpro:IPR022637|rcsb pdb:4RKI|rcsb pdb:4S3I|rcsb pdb:5FRQ|rcsb pdb:5FVE|rcsb pdb:5FXT|rcsb pdb:5G48|rcsb pdb:5G4Q|dip:DIP-3288N|uniprotkb:O25242(identity) refseq:WP_001236552.1|refseq:NP_207216.1|ensemblbacteria:AAD07489(transcript)|ensemblbacteria:HP_0418(gene)|uniprotkb:O25172(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:CQBMfETiMgCTU87/qpJz+NKtpPQ85962 rogid:T8+oNcscBN0byNIAncwJoENu/uM85962 intact-crc:6F992475CFCBFDE6|rigid:V4bUvpcAYSXImCmtl+egXOhd+QU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25242 uniprotkb:O25242 intact:EBI-7532786|intact:MINT-176339|ensemblbacteria:AAD07565 intact:EBI-7532786|intact:MINT-176339|ensemblbacteria:AAD07565 psi-mi:dpo3b_helpy(display_long)|uniprotkb:Beta-clamp processivity factor(gene name synonym)|uniprotkb:DNA polymerase III beta sliding clamp subunit(gene name synonym)|uniprotkb:DNA polymerase III subunit beta(gene name synonym)|uniprotkb:HP_0500(locus name)|uniprotkb:dnaN(gene name)|psi-mi:dnaN(display_short) psi-mi:dpo3b_helpy(display_long)|uniprotkb:Beta-clamp processivity factor(gene name synonym)|uniprotkb:DNA polymerase III beta sliding clamp subunit(gene name synonym)|uniprotkb:DNA polymerase III subunit beta(gene name synonym)|uniprotkb:HP_0500(locus name)|uniprotkb:dnaN(gene name)|psi-mi:dnaN(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320157|imex:IM-22256-193 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25242|refseq:WP_000704186.1|refseq:NP_207297.1|ensemblbacteria:AAD07565(transcript)|ensemblbacteria:HP_0500(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006271"(DNA strand elongation involved in DNA replication)|go:"GO:0008408"(3'-5' exonuclease activity)|go:"GO:0009360"(DNA polymerase III complex)|interpro:IPR001001(DNA polymerase III, beta chain)|interpro:IPR022634|interpro:IPR022635|interpro:IPR022637|rcsb pdb:4RKI|rcsb pdb:4S3I|rcsb pdb:5FRQ|rcsb pdb:5FVE|rcsb pdb:5FXT|rcsb pdb:5G48|rcsb pdb:5G4Q|dip:DIP-3288N|uniprotkb:O25242(identity) mint:O25242|refseq:WP_000704186.1|refseq:NP_207297.1|ensemblbacteria:AAD07565(transcript)|ensemblbacteria:HP_0500(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006271"(DNA strand elongation involved in DNA replication)|go:"GO:0008408"(3'-5' exonuclease activity)|go:"GO:0009360"(DNA polymerase III complex)|interpro:IPR001001(DNA polymerase III, beta chain)|interpro:IPR022634|interpro:IPR022635|interpro:IPR022637|rcsb pdb:4RKI|rcsb pdb:4S3I|rcsb pdb:5FRQ|rcsb pdb:5FVE|rcsb pdb:5FXT|rcsb pdb:5G48|rcsb pdb:5G4Q|dip:DIP-3288N|uniprotkb:O25242(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA" comment:mint|function:"DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:CQBMfETiMgCTU87/qpJz+NKtpPQ85962 rogid:CQBMfETiMgCTU87/qpJz+NKtpPQ85962 intact-crc:DF938EE6AAB38ACF|rigid:tekeC99WHQayoHAz/XPXewJ7nf8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24853 uniprotkb:O25248 intact:EBI-7635518|ensemblbacteria:AAD07074|intact:MINT-164319 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 psi-mi:nusb_helpy(display_long)|uniprotkb:nusB(gene name)|psi-mi:nusB(display_short)|uniprotkb:Antitermination factor NusB(gene name synonym)|uniprotkb:HP_0001(locus name) psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320175|imex:IM-22256-194 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000235740.1|ensemblbacteria:AAD07074(transcript)|ensemblbacteria:HP_0001(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0031564"(transcription antitermination)|interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR011605(NusB antitermination factor)|interpro:IPR035926|mint:O24853|refseq:NP_206803.1|dip:DIP-3047N|uniprotkb:O24853(identity) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Involved in the transcription termination process comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:PQhiYWqCl3QjodzOzIzpwmyiFvs85962 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 intact-crc:FE17BA48BBBC290E|rigid:haBbTokzvszvrobdnLVtACzHk1Q false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25248 uniprotkb:O24916 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-9263249|ensemblbacteria:AAD07158 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:o24916_helpy(display_long)|uniprotkb:HP_0090(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320193|imex:IM-22256-195 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) interpro:IPR001227(Acyl transferase region)|refseq:WP_001199067.1|interpro:IPR004410(Malonyl CoA-acyl carrier protein transacylase)|interpro:IPR014043(Acyl transferase)|interpro:IPR016035(Acyl transferase/acyl hydrolase/lysophospholipase)|interpro:IPR016036(Malonyl-CoA ACP transacylase, ACP-binding)|interpro:IPR024925|refseq:NP_206890.1|ensemblbacteria:AAD07158(transcript)|ensemblbacteria:HP_0090(gene)|go:"GO:0004314"([acyl-carrier-protein] S-malonyltransferase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006633"(fatty acid biosynthetic process)|uniprotkb:O24916(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:dhBknuSA2cruxErjJyRuPLPEACM85962 intact-crc:5F76A1950D6744B8|rigid:azxxBvboQm5mlLbVTKfat4uQwa8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25248 uniprotkb:O25042 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-7538890|intact:MINT-164361|ensemblbacteria:AAD07336 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:y262_helpy(display_long)|uniprotkb:HP_0262(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320211|imex:IM-22256-196 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) mint:O25042|ensemblbacteria:AAD07336(transcript)|ensemblbacteria:HP_0262(gene)|interpro:IPR041551|dip:DIP-3315N|refseq:NP_207060.1|uniprotkb:O25042(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:aBlAx6FXx0nYBFlMplRU1kY2b8I85962 intact-crc:7FA54839DB5ED8DE|rigid:NlvPqyg4uICqhS3VtwQuQafRo+g false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25248 uniprotkb:O25190 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-9263282|ensemblbacteria:AAD07509 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:o25190_helpy(display_long)|uniprotkb:HP_0442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320229|imex:IM-22256-197 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) refseq:WP_001173702.1|refseq:NP_207240.1|ensemblbacteria:AAD07509(transcript)|ensemblbacteria:HP_0442(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25190(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:atrXJxfuJh751r2ZOeGp3C19y3M85962 intact-crc:54888CD0346A8131|rigid:IJMOwudi0laEzr873gY2+jpBbVM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25248 uniprotkb:O25368 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-9263303|ensemblbacteria:AAD07719 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:o25368_helpy(display_long)|uniprotkb:mqnE(gene name)|psi-mi:mqnE(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnE(gene name synonym)|uniprotkb:HP_0654(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320247|imex:IM-22256-198 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) refseq:WP_000346642.1|interpro:IPR034405|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022432|refseq:NP_207448.1|ensemblbacteria:AAD07719(transcript)|ensemblbacteria:HP_0654(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0044689"(7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102573"(aminodeoxyfutalosine synthase activity)|uniprotkb:O25368(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:9R/kKsdk4/SLaXWEbV3rPkCNlwg85962 intact-crc:9AD845F7A78E8B78|rigid:mC7+6+bX1lNMbzeiVN+P8omttrs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25446 uniprotkb:O25248 intact:EBI-7493854|intact:MINT-164516|ensemblbacteria:AAD07802 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 psi-mi:o25446_helpy(display_long)|uniprotkb:HP_0750(locus name) psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320283|imex:IM-22256-200 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25446|refseq:NP_207543.1|refseq:WP_000277334.1|ensemblbacteria:AAD07802(transcript)|ensemblbacteria:HP_0750(gene)|interpro:IPR011055(Duplicated hybrid motif)|interpro:IPR016047(Peptidase M23)|dip:DIP-3312N|uniprotkb:O25446(identity) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YHQbJlaPCQfqcXV6yHl68EepjeQ85962 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 intact-crc:9D0C5A31DBDA56E1|rigid:Ds/+MQyujWWxA9hsxJe31gaTNTg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25378 uniprotkb:O25248 intact:EBI-7672575|ensemblbacteria:AAD07735|intact:MINT-159859 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 psi-mi:o25378_helpy(display_long)|uniprotkb:HP_0667(locus name) psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320265|imex:IM-22256-199 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07735(transcript)|ensemblbacteria:HP_0667(gene)|interpro:IPR039442|mint:O25378|dip:DIP-3471N|uniprotkb:O25378(identity) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Rasu23EsBsUF7qWG9M0g8Odk6UM85962 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 intact-crc:D41084BC49DB6E0A|rigid:dfHa7P4Xzyy/js+GnL66BVfatI8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25248 uniprotkb:O25829 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-527926|ensemblbacteria:AAD08275 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:o25829_helpy(display_long)|uniprotkb:HP_1231(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320301|imex:IM-22256-201 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) refseq:NP_208023.1|ensemblbacteria:AAD08275(transcript)|ensemblbacteria:HP_1231(gene)|go:"GO:0006261"(DNA-dependent DNA replication)|interpro:IPR027417|refseq:WP_000798416.1|dip:DIP-3678N|mint:O25829|uniprotkb:O25829(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:YDro100Ey2T21pSGVPuzD+4/vEU85962 intact-crc:8E3DC47FC87C3DCE|rigid:pYWBJfyaODQynNJCw55PA5IB7SI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26047 uniprotkb:O25248 intact:EBI-7639052|ensemblbacteria:AAD08559|intact:MINT-175273 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 psi-mi:o26047_helpy(display_long)|uniprotkb:HP_1518(locus name) psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320319|imex:IM-22256-202 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08559(transcript)|ensemblbacteria:HP_1518(gene)|mint:O26047|refseq:WP_000617669.1|refseq:NP_208309.1|dip:DIP-3752N|uniprotkb:O26047(identity) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7IXQGYsBd7MHXiMCSpSjo5t9EaM85962 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 intact-crc:82204183E25A41F1|rigid:u44vlVVTP5a7O6Y8pJrp47Z8bxo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26092 uniprotkb:O25248 intact:EBI-7497964|intact:MINT-175939|ensemblbacteria:AAD08609 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 psi-mi:o26092_helpy(display_long)|uniprotkb:HP_1572(locus name) psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320337|imex:IM-22256-203 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26092|refseq:WP_000044457.1|refseq:NP_208363.1|ensemblbacteria:AAD08609(transcript)|ensemblbacteria:HP_1572(gene)|interpro:IPR008258(Lytic transglycosylase-like, catalytic)|interpro:IPR018392|interpro:IPR023346|interpro:IPR036779|dip:DIP-3299N|uniprotkb:O26092(identity) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wrDDc9xcztpd6MTxd/CD1masB7o85962 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 intact-crc:CA49EBEFC587A14D|rigid:1123hvJTLKGrEnhM47BTBVqsQkg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25248 uniprotkb:Q9ZKJ2 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-9261157|ensemblbacteria:AAD06521 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:q9zkj2_helpj(display_long)|uniprotkb:jhp_0943(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320355|imex:IM-22256-204 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) ensemblbacteria:AAD06521(transcript)|ensemblbacteria:jhp_0943(gene)|uniprotkb:Q9ZKJ2(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:Fd4GrZEw1VnF/1tgidHZSgFgARE85963 intact-crc:E4F931367FD4B7F5|rigid:E5f+88tOhWqxgX5KFBYdpUZRgw4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25253 uniprotkb:O25253 intact:EBI-7662907|ensemblbacteria:AAD07583|intact:MINT-161682 intact:EBI-7662907|ensemblbacteria:AAD07583|intact:MINT-161682 psi-mi:hslv_helpy(display_long)|uniprotkb:hslV(gene name)|psi-mi:hslV(display_short)|uniprotkb:HP_0515(locus name) psi-mi:hslv_helpy(display_long)|uniprotkb:hslV(gene name)|psi-mi:hslV(display_short)|uniprotkb:HP_0515(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320409|imex:IM-22256-207 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07583(transcript)|ensemblbacteria:HP_0515(gene)|go:"GO:0004298"(threonine-type endopeptidase activity)|go:"GO:0005839"(proteasome core complex)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051603"(proteolysis involved in cellular protein catabolic process)|interpro:IPR001353(20S proteasome, A and B subunits)|interpro:IPR022281|interpro:IPR023333|interpro:IPR029055|mint:O25253|refseq:WP_000461024.1|refseq:NP_207312.1|dip:DIP-3441N|uniprotkb:O25253(identity) ensemblbacteria:AAD07583(transcript)|ensemblbacteria:HP_0515(gene)|go:"GO:0004298"(threonine-type endopeptidase activity)|go:"GO:0005839"(proteasome core complex)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051603"(proteolysis involved in cellular protein catabolic process)|interpro:IPR001353(20S proteasome, A and B subunits)|interpro:IPR022281|interpro:IPR023333|interpro:IPR029055|mint:O25253|refseq:WP_000461024.1|refseq:NP_207312.1|dip:DIP-3441N|uniprotkb:O25253(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Protease subunit of a proteasome-like degradation complex comment:mint|function:Protease subunit of a proteasome-like degradation complex figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:SoK3y6MMga+pPNH7yX6IQf5nmEY85962 rogid:SoK3y6MMga+pPNH7yX6IQf5nmEY85962 intact-crc:7796CE93D0168EA5|rigid:2b0YKyNZ3kApeHQW45pODhFbL4w false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25250 uniprotkb:O25250 intact:EBI-7560413|intact:MINT-169945|ensemblbacteria:AAD07573 intact:EBI-7560413|intact:MINT-169945|ensemblbacteria:AAD07573 psi-mi:o25250_helpy(display_long)|uniprotkb:HP_0509(locus name) psi-mi:o25250_helpy(display_long)|uniprotkb:HP_0509(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320373|imex:IM-22256-205 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25250|refseq:WP_000886845.1|refseq:NP_207306.1|ensemblbacteria:AAD07573(transcript)|ensemblbacteria:HP_0509(gene)|go:"GO:0008891"|go:"GO:0009339"(glycolate oxidase complex)|go:"GO:0071949"(FAD binding)|interpro:IPR004113(FAD-linked oxidase, C-terminal)|interpro:IPR004490(Glycolate oxidase subunit GlcD)|interpro:IPR006094(FAD linked oxidase, N-terminal)|interpro:IPR016164(FAD-linked oxidase-like, C-terminal)|interpro:IPR016166(FAD-binding, type 2)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR016171(Vanillyl-alcohol oxidase, C-terminal subdomain 2)|interpro:IPR036318|dip:DIP-3631N|uniprotkb:O25250(identity) mint:O25250|refseq:WP_000886845.1|refseq:NP_207306.1|ensemblbacteria:AAD07573(transcript)|ensemblbacteria:HP_0509(gene)|go:"GO:0008891"|go:"GO:0009339"(glycolate oxidase complex)|go:"GO:0071949"(FAD binding)|interpro:IPR004113(FAD-linked oxidase, C-terminal)|interpro:IPR004490(Glycolate oxidase subunit GlcD)|interpro:IPR006094(FAD linked oxidase, N-terminal)|interpro:IPR016164(FAD-linked oxidase-like, C-terminal)|interpro:IPR016166(FAD-binding, type 2)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR016171(Vanillyl-alcohol oxidase, C-terminal subdomain 2)|interpro:IPR036318|dip:DIP-3631N|uniprotkb:O25250(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zXsVRtAqOHzhv/47T6Ej+weY5Pc85962 rogid:zXsVRtAqOHzhv/47T6Ej+weY5Pc85962 intact-crc:0A5B79AF0D3D55A8|rigid:N+xMmaa4zWVL2M0c/QUweqhJHfw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25251 uniprotkb:Q9ZN32 intact:EBI-9263426|ensemblbacteria:AAD07581 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25251_helpy(display_long)|uniprotkb:HP_0511(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320391|imex:IM-22256-206 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849509.1|refseq:NP_207308.1|ensemblbacteria:AAD07581(transcript)|ensemblbacteria:HP_0511(gene)|uniprotkb:O25251(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kdk7NS0xCvd6U9tIMB7F9cF+M0k85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:2186FC5A1D958937|rigid:oHCUjDBEH4b324cTkpr4WU+P2IM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25060 uniprotkb:O25257 intact:EBI-9263459|ensemblbacteria:AAD07354 intact:EBI-2506882|ensemblbacteria:AAD07588 psi-mi:o25060_helpy(display_long)|uniprotkb:HP_0286(locus name) psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320427|imex:IM-22256-208 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001116713.1|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR027417|refseq:NP_207084.1|interpro:IPR037219|interpro:IPR041569|ensemblbacteria:AAD07354(transcript)|ensemblbacteria:HP_0286(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006508"(proteolysis)|go:"GO:0016021"(integral component of membrane)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051301"(cell division)|uniprotkb:O25060(identity) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kyiklpqc9v6vtPNnABem25DfmSk85962 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 intact-crc:ACF1EE918231EBA1|rigid:Mvlh4YT05fMl5BN3MjE28h5pa4U false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25098 uniprotkb:O25257 intact:EBI-7525931|intact:MINT-161558|ensemblbacteria:AAD07400 intact:EBI-2506882|ensemblbacteria:AAD07588 psi-mi:mind_helpy(display_long)|uniprotkb:Cell division inhibitor MinD(gene name synonym)|uniprotkb:HP_0331(locus name)|uniprotkb:minD(gene name)|psi-mi:minD(display_short) psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320445|imex:IM-22256-209 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25098|refseq:WP_001019069.1|refseq:NP_207129.1|ensemblbacteria:AAD07400(transcript)|ensemblbacteria:HP_0331(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR010223(Septum site-determining protein MinD)|interpro:IPR025501|interpro:IPR027417|dip:DIP-3247N|uniprotkb:O25098(identity) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) psi-mi:"MI:0469"(intact) comment:mint|function:ATPase required for the correct placement of the division site. Cell division inhibitors minC and minD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize ftsZ filaments that have formed before they mature into polar Z rings - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:g+X6QS/gyLXZ5JsxHvQ8dHSCKMw85962 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 intact-crc:CBD831302D7E4A0E|rigid:L0WtJEEu6TCskhLuaTDyDPu6aWs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25257 uniprotkb:O25257 intact:EBI-2506882|ensemblbacteria:AAD07588 intact:EBI-2506882|ensemblbacteria:AAD07588 psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320463|imex:IM-22256-210 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 intact-crc:C171407AC7B2BBE5|rigid:R17fEPG6Wzxp4/lfrQjIuKejZwo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25678 uniprotkb:O25257 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-2506882|ensemblbacteria:AAD07588 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320481|imex:IM-22256-211 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 intact-crc:438A9C26B2CF32E5|rigid:Qq0Q8OUd7zcyhzPbZkkdiBWEs8k false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25872 uniprotkb:O25257 intact:EBI-9260733|ensemblbacteria:AAD08330 intact:EBI-2506882|ensemblbacteria:AAD07588 psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320499|imex:IM-22256-212 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 intact-crc:E992A005513916B9|rigid:VwpkgvsRgxbOpVTTY5w0+781whs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25257 uniprotkb:Q9ZKW4 intact:EBI-2506882|ensemblbacteria:AAD07588 intact:EBI-9261600|ensemblbacteria:AAD06393 psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:q9zkw4_helpj(display_long)|uniprotkb:jhp_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320517|imex:IM-22256-213 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) interpro:IPR002495(Glycosyl transferase, family 8)|interpro:IPR029044|ensemblbacteria:AAD06393(transcript)|ensemblbacteria:jhp_0820(gene)|go:"GO:0016757"(glycosyltransferase activity)|uniprotkb:Q9ZKW4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 rogid:zzpEOeYpHTao8r++Ew1T+LCI5jA85963 intact-crc:24527088DC3BC87D|rigid:DQVq2DIRKmdgyqfniPZ1ZGzmyxw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25258 uniprotkb:O25431 intact:EBI-2506871|ensemblbacteria:AAD07589 intact:EBI-9263549|ensemblbacteria:AAD07790 psi-mi:o25258_helpy(display_long)|uniprotkb:HP_0522(locus name) psi-mi:o25431_helpy(display_long)|uniprotkb:HP_0731(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320535|imex:IM-22256-214 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07589(transcript)|ensemblbacteria:HP_0522(gene)|refseq:NP_207318.1|refseq:WP_000488766.1|dip:DIP-3529N|mint:O25258|uniprotkb:O25258(identity) refseq:WP_000787447.1|interpro:IPR006073(GTP1/OBG)|interpro:IPR027417|refseq:NP_207525.1|interpro:IPR040576|ensemblbacteria:AAD07790(transcript)|ensemblbacteria:HP_0731(gene)|go:"GO:0005525"(GTP binding)|uniprotkb:O25431(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wcW402Skc8nrZHe73TcbOslWYps85962 rogid:zHDQgn7ZO9QWD5NZUkuaPaSaFNA85962 intact-crc:A9FEC90A375FF013|rigid:DvgJQ1SUeN1c3i6lQBYhhSRak9Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25743 uniprotkb:O25258 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 intact:EBI-2506871|ensemblbacteria:AAD07589 psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:o25258_helpy(display_long)|uniprotkb:HP_0522(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320553|imex:IM-22256-215 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) ensemblbacteria:AAD07589(transcript)|ensemblbacteria:HP_0522(gene)|refseq:NP_207318.1|refseq:WP_000488766.1|dip:DIP-3529N|mint:O25258|uniprotkb:O25258(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 rogid:wcW402Skc8nrZHe73TcbOslWYps85962 intact-crc:B6754166CB0E5094|rigid:lZd2klF8w+rtZYAMAeqAL/0Tu7M false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25267 uniprotkb:O25506 intact:EBI-9263622|ensemblbacteria:AAD07613 intact:EBI-9263618|ensemblbacteria:AAD07885 psi-mi:o25267_helpy(display_long)|uniprotkb:HP_0533(locus name) psi-mi:dbh_helpy(display_long)|uniprotkb:hup(gene name)|psi-mi:hup(display_short)|uniprotkb:HP_0835(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320607|imex:IM-22256-218 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07613(transcript)|ensemblbacteria:HP_0533(gene)|uniprotkb:O25267(identity) refseq:WP_001029082.1|interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:NP_207628.1|ensemblbacteria:AAD07885(transcript)|ensemblbacteria:HP_0835(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0030261"(chromosome condensation)|uniprotkb:O25506(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3INAPSvNtsli2Y3MPAW8JU8cmPk85962 rogid:GQXhyhcmi/G0HX+TP3OKFgHMZbU85962 intact-crc:C25EDE45E59A0C01|rigid:TLadZYXVnu5k1uYusNcVWdQEltk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25835 uniprotkb:O25261 intact:EBI-7682324|ensemblbacteria:AAD08282|intact:MINT-179287 intact:EBI-9263582|ensemblbacteria:AAD07593 psi-mi:cara_helpy(display_long)|uniprotkb:HP_1237(locus name)|uniprotkb:carA(gene name)|psi-mi:carA(display_short)|uniprotkb:Carbamoyl-phosphate synthetase glutamine chain(gene name synonym) psi-mi:o25261_helpy(display_long)|uniprotkb:HP_0526(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320571|imex:IM-22256-216 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08282(transcript)|ensemblbacteria:HP_1237(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR002474(Carbamoyl phosphate synthase, small subunit, N-terminal)|interpro:IPR006274(Carbamoyl phosphate synthase, small subunit)|interpro:IPR017926|interpro:IPR029062|interpro:IPR035686|interpro:IPR036480|mint:O25835|refseq:NP_208029.1|refseq:WP_000254171.1|dip:DIP-3716N|uniprotkb:O25835(identity) refseq:WP_000418809.1|interpro:IPR015139(Cag pathogenicity island protein, CagZ)|refseq:NP_207322.1|rcsb pdb:6JHO|interpro:IPR036303|ensemblbacteria:AAD07593(transcript)|ensemblbacteria:HP_0526(gene)|uniprotkb:O25261(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gAHDEhdmYidFyW/kb1zE03sniRc85962 rogid:9tGFgyPZpUWZ7K5r04mdtqRhhMs85962 intact-crc:E770B4C267E6BF35|rigid:FszFpaO44m8oSh1Ngyl1Hfe2uVo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34461 uniprotkb:O25261 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-9263582|ensemblbacteria:AAD07593 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o25261_helpy(display_long)|uniprotkb:HP_0526(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320589|imex:IM-22256-217 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:WP_000418809.1|interpro:IPR015139(Cag pathogenicity island protein, CagZ)|refseq:NP_207322.1|rcsb pdb:6JHO|interpro:IPR036303|ensemblbacteria:AAD07593(transcript)|ensemblbacteria:HP_0526(gene)|uniprotkb:O25261(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:9tGFgyPZpUWZ7K5r04mdtqRhhMs85962 intact-crc:1D96F6F61E305B64|rigid:cm+kiTsVia8KGHopLlJUfhVOixU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25257 uniprotkb:O25270 intact:EBI-2506882|ensemblbacteria:AAD07588 intact:EBI-527906|ensemblbacteria:AAD07603 psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320625|imex:IM-22256-219 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 intact-crc:1D484F5AE15014F9|rigid:V/4tMCX3ibixSHypD02NrGfoHzs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25423 uniprotkb:O25270 intact:EBI-9260274|ensemblbacteria:AAD07777 intact:EBI-527906|ensemblbacteria:AAD07603 psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320643|imex:IM-22256-220 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 intact-crc:4A1ACD6E5DF202B9|rigid:BEuUPiKC1jSUCn22mWnlkrQQCBM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25479 uniprotkb:O25270 intact:EBI-9260912|ensemblbacteria:AAD07838 intact:EBI-527906|ensemblbacteria:AAD07603 psi-mi:o25479_helpy(display_long)|uniprotkb:HP_0790(locus name) psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320661|imex:IM-22256-221 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000548846.1|interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_207583.1|ensemblbacteria:AAD07838(transcript)|ensemblbacteria:HP_0790(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O25479(identity) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3vMD4PEETybdKkrbPWu3T1Std2U85962 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 intact-crc:D879C1A40E11052A|rigid:0gHlNJxSMB78J+k8GQYcOrV4Ir8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25615 uniprotkb:O25270 intact:EBI-7493929|intact:MINT-161937|ensemblbacteria:AAD08009 intact:EBI-527906|ensemblbacteria:AAD07603 psi-mi:o25615_helpy(display_long)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short)|uniprotkb:HP_0962(locus name) psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320679|imex:IM-22256-222 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25615|refseq:NP_207754.1|ensemblbacteria:AAD08009(transcript)|ensemblbacteria:HP_0962(gene)|go:"GO:0000035"(acyl binding)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005829"(cytosol)|go:"GO:0009245"(lipid A biosynthetic process)|interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR009081(Acyl carrier protein-like)|interpro:IPR036736|refseq:WP_001862971.1|dip:DIP-3606N|uniprotkb:O25615(identity) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5bZhVpT0ZrohWG6bMoIe01MRudk85962 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 intact-crc:2F9B7755048FABFD|rigid:KeFrp/S6vNr0F96YCASsNVofaIM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34995 uniprotkb:O25270 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 intact:EBI-527906|ensemblbacteria:AAD07603 psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320697|imex:IM-22256-223 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 intact-crc:C3A68DA0D3532344|rigid:/VbG01/aYrFq4dhRO65NLHzhXs0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25270 uniprotkb:Q9ZKL0 intact:EBI-527906|ensemblbacteria:AAD07603 intact:EBI-9263715|ensemblbacteria:AAD06502 psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:q9zkl0_helpj(display_long)|uniprotkb:jhp_0925(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320715|imex:IM-22256-224 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) ensemblbacteria:AAD06502(transcript)|ensemblbacteria:jhp_0925(gene)|uniprotkb:Q9ZKL0(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 rogid:Cx2zMo2YQpU8lrmkD3fHlcXnE6A85963 intact-crc:99A955E25046BCCE|rigid:OOgruLVOGUkJVc0fA47IKad56kQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25113 uniprotkb:O25271 intact:EBI-7633054|ensemblbacteria:AAD07417|intact:MINT-187451 intact:EBI-9263733|ensemblbacteria:AAD07604 psi-mi:o25113_helpy(display_long)|uniprotkb:HP_0346(locus name) psi-mi:o25271_helpy(display_long)|uniprotkb:HP_0538(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320733|imex:IM-22256-225 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07417(transcript)|ensemblbacteria:HP_0346(gene)|mint:O25113|refseq:WP_010875469.1|dip:DIP-3740N|uniprotkb:O25113(identity) refseq:WP_000835501.1|refseq:NP_207334.1|ensemblbacteria:AAD07604(transcript)|ensemblbacteria:HP_0538(gene)|uniprotkb:O25271(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3tDHTPf4i6qTBg5T+5R4VwGUUfo85962 rogid:Yu5v0eSqnkWPdqzeaItKSBimfXA85962 intact-crc:8D03FDDD322C02CD|rigid:qt4qPHzzUCSRz/Cxg9il9gi5Zzs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25271 uniprotkb:O25131 intact:EBI-9263733|ensemblbacteria:AAD07604 intact:EBI-9260429|ensemblbacteria:AAD07436 psi-mi:o25271_helpy(display_long)|uniprotkb:HP_0538(locus name) psi-mi:o25131_helpy(display_long)|uniprotkb:HP_0367(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320751|imex:IM-22256-226 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000835501.1|refseq:NP_207334.1|ensemblbacteria:AAD07604(transcript)|ensemblbacteria:HP_0538(gene)|uniprotkb:O25271(identity) refseq:WP_000036594.1|refseq:NP_207165.1|ensemblbacteria:AAD07436(transcript)|ensemblbacteria:HP_0367(gene)|uniprotkb:O25131(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Yu5v0eSqnkWPdqzeaItKSBimfXA85962 rogid:vNcwqrbdOwZJqhozwAb0bBST2t085962 intact-crc:CA251191FAEACDA0|rigid:EM5lCGHgizb5sCZ4Ed8dT7NKVc0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25743 uniprotkb:O25271 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 intact:EBI-9263733|ensemblbacteria:AAD07604 psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:o25271_helpy(display_long)|uniprotkb:HP_0538(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320769|imex:IM-22256-227 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) refseq:WP_000835501.1|refseq:NP_207334.1|ensemblbacteria:AAD07604(transcript)|ensemblbacteria:HP_0538(gene)|uniprotkb:O25271(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 rogid:Yu5v0eSqnkWPdqzeaItKSBimfXA85962 intact-crc:F4FF805B727F6D2D|rigid:CKrTUmnA2cOZG553lGCCD2ZhOuY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26083 uniprotkb:O25271 intact:EBI-9260625|ensemblbacteria:AAD08602 intact:EBI-9263733|ensemblbacteria:AAD07604 psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:o25271_helpy(display_long)|uniprotkb:HP_0538(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320787|imex:IM-22256-228 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) refseq:WP_000835501.1|refseq:NP_207334.1|ensemblbacteria:AAD07604(transcript)|ensemblbacteria:HP_0538(gene)|uniprotkb:O25271(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 rogid:Yu5v0eSqnkWPdqzeaItKSBimfXA85962 intact-crc:9804863409D04833|rigid:H+KuGp+tJifoyDbkNg7ilWFWhFk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25272 uniprotkb:O25272 intact:EBI-7651076|ensemblbacteria:AAD07605|intact:MINT-161915 intact:EBI-7651076|ensemblbacteria:AAD07605|intact:MINT-161915 psi-mi:o25272_helpy(display_long)|uniprotkb:HP_0539(locus name) psi-mi:o25272_helpy(display_long)|uniprotkb:HP_0539(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320805|imex:IM-22256-229 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25272|ensemblbacteria:AAD07605(transcript)|ensemblbacteria:HP_0539(gene)|rcsb pdb:3ZCI|rcsb pdb:3ZCJ|rcsb pdb:4CII|rcsb pdb:4X5U|refseq:NP_207335.1|refseq:WP_000855299.1|dip:DIP-3544N|uniprotkb:O25272(identity) mint:O25272|ensemblbacteria:AAD07605(transcript)|ensemblbacteria:HP_0539(gene)|rcsb pdb:3ZCI|rcsb pdb:3ZCJ|rcsb pdb:4CII|rcsb pdb:4X5U|refseq:NP_207335.1|refseq:WP_000855299.1|dip:DIP-3544N|uniprotkb:O25272(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nQvUcaMFjvL0wOk4hyIagpwGQ5s85962 rogid:nQvUcaMFjvL0wOk4hyIagpwGQ5s85962 intact-crc:F798A7FECBF7610A|rigid:VcZoJbdyMdEF9GITrhK9bk/6SxM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25274 uniprotkb:O26083 intact:EBI-9263808|ensemblbacteria:AAD07607 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:o25274_helpy(display_long)|uniprotkb:HP_0541(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320823|imex:IM-22256-230 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010875497.1|refseq:NP_207337.1|ensemblbacteria:AAD07607(transcript)|ensemblbacteria:HP_0541(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25274(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lFFrvOfPtjwcFaQo711f/J6stX085962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:FEBBCAC0C69CBCFC|rigid:5bh/dEht3cLDl6DTHV9QMD2jaUY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O25276 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-2585205|ensemblbacteria:AAD07609 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25276_helpy(display_long)|uniprotkb:HP_0543(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320841|imex:IM-22256-231 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) refseq:NP_207339.1|ensemblbacteria:AAD07609(transcript)|ensemblbacteria:HP_0543(gene)|refseq:WP_000814259.1|uniprotkb:O25276(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:1rewNPLJqe/y7nFjRH1uemCxYIA85962 intact-crc:84991BFBE83D4A76|rigid:m5ZMhKOenq2ufKeph+nmspLVaz0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25649 uniprotkb:O25276 intact:EBI-9260700|ensemblbacteria:AAD08050 intact:EBI-2585205|ensemblbacteria:AAD07609 psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:o25276_helpy(display_long)|uniprotkb:HP_0543(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320859|imex:IM-22256-232 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) refseq:NP_207339.1|ensemblbacteria:AAD07609(transcript)|ensemblbacteria:HP_0543(gene)|refseq:WP_000814259.1|uniprotkb:O25276(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 rogid:1rewNPLJqe/y7nFjRH1uemCxYIA85962 intact-crc:5BA89B5DDEBB2603|rigid:VUCpVivZ+LobR15UU4q3kb+cCZQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25008 uniprotkb:O25281 intact:EBI-7607228|intact:MINT-177413|ensemblbacteria:AAD07288 intact:EBI-7561260|intact:MINT-4065553|ensemblbacteria:AAD07621 psi-mi:iscs_helpy(display_long)|uniprotkb:iscS(gene name)|psi-mi:iscS(display_short)|uniprotkb:HP_0220(locus name) psi-mi:o25281_helpy(display_long)|uniprotkb:HP_0555(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320895|imex:IM-22256-234 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941691.1|mint:O25008|refseq:NP_207018.1|ensemblbacteria:AAD07288(transcript)|ensemblbacteria:HP_0220(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006534"(cysteine metabolic process)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0044571"([2Fe-2S] cluster assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR010240(Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017773(Cysteine desulphurase, NifS, proteobacteria)|rcsb pdb:5WT2|rcsb pdb:5WT4|rcsb pdb:5WT5|rcsb pdb:5WT6|rcsb pdb:6KG0|rcsb pdb:6KG1|rcsb pdb:7CET|rcsb pdb:7CEU|dip:DIP-3630N|uniprotkb:O25008(identity) refseq:WP_000792823.1|mint:O25281|refseq:NP_207350.1|ensemblbacteria:AAD07621(transcript)|ensemblbacteria:HP_0555(gene)|uniprotkb:O25281(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the removal of elemental sulfur from cysteine to produce alanine comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YiXCohNQqJR9uWzOaw8ACg2+SmE85962 rogid:j1Ircb978rDdJr0b+ERbTW6corQ85962 intact-crc:AA4F83334EA86184|rigid:5IlGCZWXZhwkwwDDYTCk93UOyFo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25279 uniprotkb:O25279 intact:EBI-7680803|ensemblbacteria:AAD07619|intact:MINT-170026 intact:EBI-7680803|ensemblbacteria:AAD07619|intact:MINT-170026 psi-mi:o25279_helpy(display_long)|uniprotkb:HP_0553(locus name) psi-mi:o25279_helpy(display_long)|uniprotkb:HP_0553(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320877|imex:IM-22256-233 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07619(transcript)|ensemblbacteria:HP_0553(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0006396"(RNA processing)|go:"GO:0008173"(RNA methyltransferase activity)|interpro:IPR001537(tRNA/rRNA methyltransferase, SpoU)|interpro:IPR004441(RNA methyltransferase TrmH, group 3)|interpro:IPR013123(RNA 2-O ribose methyltransferase, substrate binding)|interpro:IPR029026|interpro:IPR029028|interpro:IPR029064|mint:O25279|refseq:NP_207348.1|refseq:WP_001149319.1|dip:DIP-3450N|uniprotkb:O25279(identity) ensemblbacteria:AAD07619(transcript)|ensemblbacteria:HP_0553(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0006396"(RNA processing)|go:"GO:0008173"(RNA methyltransferase activity)|interpro:IPR001537(tRNA/rRNA methyltransferase, SpoU)|interpro:IPR004441(RNA methyltransferase TrmH, group 3)|interpro:IPR013123(RNA 2-O ribose methyltransferase, substrate binding)|interpro:IPR029026|interpro:IPR029028|interpro:IPR029064|mint:O25279|refseq:NP_207348.1|refseq:WP_001149319.1|dip:DIP-3450N|uniprotkb:O25279(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yTKsChhHxtQxW+qmQucppppexkw85962 rogid:yTKsChhHxtQxW+qmQucppppexkw85962 intact-crc:9B89FE9992294351|rigid:PNPmEpwxPNLny1U3rStTD55qnLw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25604 uniprotkb:O25283 intact:EBI-7493450|intact:MINT-163318|ensemblbacteria:AAD07995 intact:EBI-9260195|ensemblbacteria:AAD07624 psi-mi:o25604_helpy(display_long)|uniprotkb:accD(gene name)|psi-mi:accD(display_short)|uniprotkb:HP_0950(locus name) psi-mi:acca_helpy(display_long)|uniprotkb:accA(gene name)|psi-mi:accA(display_short)|uniprotkb:HP_0557(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320913|imex:IM-22256-235 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25604|refseq:NP_207742.1|refseq:WP_000505053.1|ensemblbacteria:AAD07995(transcript)|ensemblbacteria:HP_0950(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016743"(carboxyl- or carbamoyltransferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR029045|interpro:IPR034733|interpro:IPR041010|dip:DIP-3163N|uniprotkb:O25604(identity) refseq:WP_000312027.1|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|refseq:NP_207352.1|interpro:IPR029045|ensemblbacteria:AAD07624(transcript)|ensemblbacteria:HP_0557(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016743"(carboxyl- or carbamoyltransferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|uniprotkb:O25283(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GuFC+qkk90rBmLkeFOOzi9Ze73885962 rogid:dtK9OQ8rBpkfINTjAK9rsVkEh5s85962 intact-crc:3DE3F87618AABA53|rigid:BWSfBkg6LBh6l0UqckR8ZDxRarg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24963 uniprotkb:O25286 intact:EBI-7578895|intact:MINT-169539|ensemblbacteria:AAD07225 intact:EBI-9263901|ensemblbacteria:AAD07627 psi-mi:o24963_helpy(display_long)|uniprotkb:mqnD(gene name)|psi-mi:mqnD(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnD(gene name synonym)|uniprotkb:HP_0152(locus name) psi-mi:o25286_helpy(display_long)|uniprotkb:HP_0561(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320931|imex:IM-22256-236 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000626212.1|mint:O24963|refseq:NP_206951.1|ensemblbacteria:AAD07225(transcript)|ensemblbacteria:HP_0152(gene)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0016830"(carbon-carbon lyase activity)|interpro:IPR003773(Protein of unknown function DUF178)|interpro:IPR030869|dip:DIP-3490N|uniprotkb:O24963(identity) refseq:WP_001160833.1|interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR011284("3-oxoacyl-(acyl-carrier-protein) reductase")|interpro:IPR020904|rcsb pdb:4IIN|rcsb pdb:4IJK|refseq:NP_207356.1|interpro:IPR036291|ensemblbacteria:AAD07627(transcript)|ensemblbacteria:HP_0561(gene)|go:"GO:0004316"("3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity")|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0051287"(NAD binding)|go:"GO:0102131"(obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity)|go:"GO:0102132"(obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity)|uniprotkb:O25286(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QpecijE6hHyZHGGWgZw3+QbLzSM85962 rogid:kiel4FDtSZFLpvpjErFYXe8r2b485962 intact-crc:704926CD33447B83|rigid:vLHlTU3SuiGT5zZKu5kLkt2sY8U false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25286 uniprotkb:O25286 intact:EBI-9263901|ensemblbacteria:AAD07627 intact:EBI-9263901|ensemblbacteria:AAD07627 psi-mi:o25286_helpy(display_long)|uniprotkb:HP_0561(locus name) psi-mi:o25286_helpy(display_long)|uniprotkb:HP_0561(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320949|imex:IM-22256-237 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001160833.1|interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR011284("3-oxoacyl-(acyl-carrier-protein) reductase")|interpro:IPR020904|rcsb pdb:4IIN|rcsb pdb:4IJK|refseq:NP_207356.1|interpro:IPR036291|ensemblbacteria:AAD07627(transcript)|ensemblbacteria:HP_0561(gene)|go:"GO:0004316"("3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity")|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0051287"(NAD binding)|go:"GO:0102131"(obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity)|go:"GO:0102132"(obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity)|uniprotkb:O25286(identity) refseq:WP_001160833.1|interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR011284("3-oxoacyl-(acyl-carrier-protein) reductase")|interpro:IPR020904|rcsb pdb:4IIN|rcsb pdb:4IJK|refseq:NP_207356.1|interpro:IPR036291|ensemblbacteria:AAD07627(transcript)|ensemblbacteria:HP_0561(gene)|go:"GO:0004316"("3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity")|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0051287"(NAD binding)|go:"GO:0102131"(obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity)|go:"GO:0102132"(obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity)|uniprotkb:O25286(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kiel4FDtSZFLpvpjErFYXe8r2b485962 rogid:kiel4FDtSZFLpvpjErFYXe8r2b485962 intact-crc:C4230A04213AD66D|rigid:KA8Ibhu6HMj/YZw2X0tqLP2owfE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25265 uniprotkb:O25290 intact:EBI-9260592|ensemblbacteria:AAD07597 intact:EBI-9263938|ensemblbacteria:AAD07622 psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:dapf_helpy(display_long)|uniprotkb:dapF(gene name)|psi-mi:dapF(display_short)|uniprotkb:PLP-independent amino acid racemase(gene name synonym)|uniprotkb:HP_0566(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320967|imex:IM-22256-238 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) refseq:WP_000232462.1|interpro:IPR001653(Diaminopimelate epimerase)|interpro:IPR018510|refseq:NP_207361.1|ensemblbacteria:AAD07622(transcript)|ensemblbacteria:HP_0566(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008837"(diaminopimelate epimerase activity)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|uniprotkb:O25290(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 rogid:C/mjrCaBBQRuR/+zZbeIDy3WX3U85962 intact-crc:84A212D2A8A2D2D0|rigid:euvP4XAkxSjCK75Q90G0R4eLTMg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O06914 uniprotkb:O25292 intact:EBI-9261354|ensemblbacteria:AAD07258 intact:EBI-9263969|ensemblbacteria:AAD07630 psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:o25292_helpy(display_long)|uniprotkb:HP_0568(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321003|imex:IM-22256-240 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) refseq:WP_001863342.1|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR023885|refseq:NP_207363.1|ensemblbacteria:AAD07630(transcript)|ensemblbacteria:HP_0568(gene)|go:"GO:0003824"(catalytic activity)|uniprotkb:O25292(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 rogid:nfVwHFhWI2rBKf/JJcXuPGfp5Yw85962 intact-crc:5658E4CCD067EF25|rigid:0W6Rqbi+ruub4oRh4zcbS2DT/Dw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25290 uniprotkb:O25290 intact:EBI-9263938|ensemblbacteria:AAD07622 intact:EBI-9263938|ensemblbacteria:AAD07622 psi-mi:dapf_helpy(display_long)|uniprotkb:dapF(gene name)|psi-mi:dapF(display_short)|uniprotkb:PLP-independent amino acid racemase(gene name synonym)|uniprotkb:HP_0566(locus name) psi-mi:dapf_helpy(display_long)|uniprotkb:dapF(gene name)|psi-mi:dapF(display_short)|uniprotkb:PLP-independent amino acid racemase(gene name synonym)|uniprotkb:HP_0566(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9320985|imex:IM-22256-239 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000232462.1|interpro:IPR001653(Diaminopimelate epimerase)|interpro:IPR018510|refseq:NP_207361.1|ensemblbacteria:AAD07622(transcript)|ensemblbacteria:HP_0566(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008837"(diaminopimelate epimerase activity)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|uniprotkb:O25290(identity) refseq:WP_000232462.1|interpro:IPR001653(Diaminopimelate epimerase)|interpro:IPR018510|refseq:NP_207361.1|ensemblbacteria:AAD07622(transcript)|ensemblbacteria:HP_0566(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008837"(diaminopimelate epimerase activity)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|uniprotkb:O25290(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:C/mjrCaBBQRuR/+zZbeIDy3WX3U85962 rogid:C/mjrCaBBQRuR/+zZbeIDy3WX3U85962 intact-crc:AA77DDCE882EFABC|rigid:S/+8v2bAGhJVL3Um7vofXMJYlfo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25293 uniprotkb:O34461 intact:EBI-7598833|intact:MINT-187680|ensemblbacteria:AAD07637 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:o25293_helpy(display_long)|uniprotkb:ychF(gene name)|psi-mi:ychF(display_short)|uniprotkb:HP_0569(locus name) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321021|imex:IM-22256-241 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25293|refseq:WP_000524601.1|refseq:NP_207364.1|ensemblbacteria:AAD07637(transcript)|ensemblbacteria:HP_0569(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0043022"(ribosome binding)|go:"GO:0043023"(ribosomal large subunit binding)|interpro:IPR004095(TGS)|interpro:IPR004396(Conserved hypothetical protein CHP00092)|interpro:IPR006073(GTP1/OBG)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR012676(TGS-like)|interpro:IPR013029(Protein of unknown function DUF933)|interpro:IPR023192|interpro:IPR027417|interpro:IPR031167|interpro:IPR041706|dip:DIP-3545N|uniprotkb:O25293(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1MfZhiMT56IqhIJ9nAp06fa4eu885962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:B7C1B0BE2FE61355|rigid:gQM3gQ4Occ/jieuM9aqLdtBhWfc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24991 uniprotkb:O25300 intact:EBI-7525732|intact:MINT-165883|ensemblbacteria:AAD07263 intact:EBI-9264002|ensemblbacteria:AAD07643 psi-mi:lpxd_helpy(display_long)|uniprotkb:HP_0196(locus name)|uniprotkb:lpxD(gene name)|psi-mi:lpxD(display_short) psi-mi:lep_helpy(display_long)|uniprotkb:lepB(gene name)|psi-mi:lepB(display_short)|uniprotkb:Leader peptidase I(gene name synonym)|uniprotkb:HP_0576(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321039|imex:IM-22256-242 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24991|refseq:WP_000777041.1|refseq:NP_206995.1|ensemblbacteria:AAD07263(transcript)|ensemblbacteria:HP_0196(gene)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016410"(N-acyltransferase activity)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR007691(UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD)|interpro:IPR011004(Trimeric LpxA-like)|interpro:IPR020573|dip:DIP-3246N|uniprotkb:O24991(identity) refseq:WP_000670710.1|interpro:IPR019533|interpro:IPR000223(Peptidase S26A, signal peptidase I)|interpro:IPR019758|refseq:NP_207371.1|interpro:IPR036286|ensemblbacteria:AAD07643(transcript)|ensemblbacteria:HP_0576(gene)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0006465"(signal peptide processing)|uniprotkb:O25300(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QasheDoo1gV2p/HLISvtoewJ1Fg85962 rogid:oLuWSBw6mvk5vxTPYQzf0n1OA/E85962 intact-crc:0CF3CA7EC78C60DC|rigid:XWcwfswVc9QWNaw07e4ctzJ7iMk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25674 uniprotkb:O25306 intact:EBI-7559878|intact:MINT-4065399|ensemblbacteria:AAD08074 intact:EBI-7724193|ensemblbacteria:AAD07636|intact:MINT-181297 psi-mi:o25674_helpy(display_long)|uniprotkb:HP_1030(locus name) psi-mi:o25306_helpy(display_long)|uniprotkb:HP_0584(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321075|imex:IM-22256-244 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|mint:O25674|refseq:WP_001150629.1|interpro:IPR036429|refseq:NP_207820.1|interpro:IPR028976|ensemblbacteria:AAD08074(transcript)|ensemblbacteria:HP_1030(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|rcsb pdb:5XRW|uniprotkb:O25674(identity) mint:O25306|ensemblbacteria:AAD07636(transcript)|ensemblbacteria:HP_0584(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0016020"(membrane)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|interpro:IPR036429|rcsb pdb:5XRW|refseq:WP_000004827.1|refseq:NP_207379.1|dip:DIP-3483N|uniprotkb:O25306(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wh43hksoYo8r/6ZiCbBBRMIq0ko85962 rogid:mFQXnvxmknautsuYvYOp6RAC9mg85962 intact-crc:1314018280387BE9|rigid:i2LVOdtNgz9jBpC+5t2UmICqy8A false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25629 uniprotkb:O25300 intact:EBI-7505515|intact:MINT-163208|ensemblbacteria:AAD08024 intact:EBI-9264002|ensemblbacteria:AAD07643 psi-mi:ftsa_helpy(display_long)|uniprotkb:ftsA(gene name)|psi-mi:ftsA(display_short)|uniprotkb:HP_0978(locus name) psi-mi:lep_helpy(display_long)|uniprotkb:lepB(gene name)|psi-mi:lepB(display_short)|uniprotkb:Leader peptidase I(gene name synonym)|uniprotkb:HP_0576(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321057|imex:IM-22256-243 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25629|refseq:WP_000400290.1|refseq:NP_207769.1|ensemblbacteria:AAD08024(transcript)|ensemblbacteria:HP_0978(gene)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051301"(cell division)|interpro:IPR003494(Cell division protein FtsA)|interpro:IPR020823|interpro:IPR043129|dip:DIP-3124N|uniprotkb:O25629(identity) refseq:WP_000670710.1|interpro:IPR019533|interpro:IPR000223(Peptidase S26A, signal peptidase I)|interpro:IPR019758|refseq:NP_207371.1|interpro:IPR036286|ensemblbacteria:AAD07643(transcript)|ensemblbacteria:HP_0576(gene)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0006465"(signal peptide processing)|uniprotkb:O25300(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein may be involved in anomalous filament growth. May be a component of the septum - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jRkQVJaEFRsCXTz0mUmRP13iyes85962 rogid:oLuWSBw6mvk5vxTPYQzf0n1OA/E85962 intact-crc:A54179AFE4E28371|rigid:fO5vej7BgUVmZDoB4ypasP5bPOA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25310 uniprotkb:O25310 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321111|imex:IM-22256-246 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 intact-crc:0488E36886130CFD|rigid:fFiSdVrYFGf0oKoBpxZOEX7zvfY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25309 uniprotkb:O26071 intact:EBI-7595441|intact:MINT-186070|ensemblbacteria:AAD07652 intact:EBI-9261904|ensemblbacteria:AAD08590 psi-mi:o25309_helpy(display_long)|uniprotkb:mltG(gene name)|psi-mi:mltG(display_short)|uniprotkb:Peptidoglycan polymerization terminase(gene name synonym)|uniprotkb:HP_0587(locus name) psi-mi:o26071_helpy(display_long)|uniprotkb:HP_1546(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321093|imex:IM-22256-245 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000208854.1|mint:O25309|refseq:NP_207382.1|ensemblbacteria:AAD07652(transcript)|ensemblbacteria:HP_0587(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0008932"(lytic endotransglycosylase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0016829"(lyase activity)|go:"GO:0071555"(cell wall organization)|interpro:IPR003770(Aminodeoxychorismate lyase)|dip:DIP-3582N|uniprotkb:O25309(identity) refseq:WP_001202125.1|interpro:IPR007485(Rare lipoprotein B)|refseq:NP_208337.1|ensemblbacteria:AAD08590(transcript)|ensemblbacteria:HP_1546(gene)|go:"GO:0019867"(outer membrane)|go:"GO:0043165"(Gram-negative-bacterium-type cell outer membrane assembly)|uniprotkb:O26071(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:t/lUKeysDHvBjQ7h+p8wecKoGhA85962 rogid:G4XOzucE1Mq9a/cBvsA+kr5IyHk85962 intact-crc:CA047EDDC32F1490|rigid:4Tt3680o7wBQdh7eS4dH6qLzoYg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25313 uniprotkb:O25018 intact:EBI-7684348|ensemblbacteria:AAD07656|intact:MINT-162176 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 psi-mi:o25313_helpy(display_long)|uniprotkb:HP_0591(locus name) psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321129|imex:IM-22256-247 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25313|ensemblbacteria:AAD07656(transcript)|ensemblbacteria:HP_0591(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:WP_000388051.1|refseq:NP_207386.1|dip:DIP-3451N|uniprotkb:O25313(identity) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+46+PF3uRbdyh6c+FTZDJyJr6so85962 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 intact-crc:47A1E179FCE05DB9|rigid:M/z2zJvJXNotQ2m0C56CX6jNR10 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25313 uniprotkb:O26083 intact:EBI-7684348|ensemblbacteria:AAD07656|intact:MINT-162176 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:o25313_helpy(display_long)|uniprotkb:HP_0591(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321147|imex:IM-22256-248 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25313|ensemblbacteria:AAD07656(transcript)|ensemblbacteria:HP_0591(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:WP_000388051.1|refseq:NP_207386.1|dip:DIP-3451N|uniprotkb:O25313(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+46+PF3uRbdyh6c+FTZDJyJr6so85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:BE08CA07C1ECCBFB|rigid:KQ+8awa1AE/hdV6TRm5UycYpDSY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56122 uniprotkb:O25313 intact:EBI-7500271|intact:MINT-176132|ensemblbacteria:AAD07726 intact:EBI-7684348|ensemblbacteria:AAD07656|intact:MINT-162176 psi-mi:aroc_helpy(display_long)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym) psi-mi:o25313_helpy(display_long)|uniprotkb:HP_0591(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321165|imex:IM-22256-249 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56122|refseq:WP_001094036.1|interpro:IPR020541|refseq:NP_207457.1|interpro:IPR000453(Chorismate synthase)|ensemblbacteria:AAD07726(transcript)|ensemblbacteria:HP_0663(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0010181"(FMN binding)|rcsb pdb:1UM0|rcsb pdb:1UMF|interpro:IPR035904|uniprotkb:P56122(identity) mint:O25313|ensemblbacteria:AAD07656(transcript)|ensemblbacteria:HP_0591(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:WP_000388051.1|refseq:NP_207386.1|dip:DIP-3451N|uniprotkb:O25313(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ALKO1omI2Rxmk057Rl7wyKvMlc85962 rogid:+46+PF3uRbdyh6c+FTZDJyJr6so85962 intact-crc:ADC3BE055915A68B|rigid:bszjx+NVVOKe8ptrR/dH08hre7A false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25321 uniprotkb:O25154 intact:EBI-7577202|intact:MINT-187505|ensemblbacteria:AAD07662 intact:EBI-9260679|ensemblbacteria:AAD07458 psi-mi:o25321_helpy(display_long)|uniprotkb:HP_0599(locus name) psi-mi:chev3_helpy(display_long)|uniprotkb:cheV3(gene name)|psi-mi:cheV3(display_short)|uniprotkb:HP_0393(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321183|imex:IM-22256-250 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000467802.1|mint:O25321|refseq:NP_207394.1|ensemblbacteria:AAD07662(transcript)|ensemblbacteria:HP_0599(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016020"(membrane)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR025991|dip:DIP-3485N|uniprotkb:O25321(identity) refseq:WP_000818647.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:NP_207191.1|interpro:IPR036061|ensemblbacteria:AAD07458(transcript)|ensemblbacteria:HP_0393(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|uniprotkb:O25154(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YXk7N41WMjfNAWCxz3+ICouzcqo85962 rogid:4Ehxv3H/rtna3/+juonpRarYHAk85962 intact-crc:CB0DA31EF752414A|rigid:wjI4Actvyk8pRAJO1XCbLN8kNWw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25335 uniprotkb:O25874 intact:EBI-7574904|intact:MINT-186599|ensemblbacteria:AAD07688 intact:EBI-7263126|intact:MINT-165617|ensemblbacteria:AAD08332 psi-mi:o25335_helpy(display_long)|uniprotkb:HP_0614(locus name) psi-mi:o25874_helpy(display_long)|uniprotkb:HP_1287(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321201|imex:IM-22256-251 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000969950.1|mint:O25335|refseq:NP_207409.1|ensemblbacteria:AAD07688(transcript)|ensemblbacteria:HP_0614(gene)|dip:DIP-3463N|uniprotkb:O25335(identity) mint:O25874|refseq:NP_208079.1|refseq:WP_001198338.1|ensemblbacteria:AAD08332(transcript)|ensemblbacteria:HP_1287(gene)|go:"GO:0005829"(cytosol)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:0050334"(thiaminase activity)|interpro:IPR004305(TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C)|interpro:IPR016084(Haem oxygenase-like, multi-helical)|interpro:IPR027574|dip:DIP-3726N|uniprotkb:O25874(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tgSpScAFbkrTcteMgDioyPcKPk885962 rogid:UFVRqUwE4cy8k6lgR6jvPHZPOYw85962 intact-crc:FD195453655AB869|rigid:SBVkuVw26xV1BZwfnJ8kIMf2XUY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25335 uniprotkb:Q9ZKK8 intact:EBI-7574904|intact:MINT-186599|ensemblbacteria:AAD07688 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25335_helpy(display_long)|uniprotkb:HP_0614(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321237|imex:IM-22256-253 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000969950.1|mint:O25335|refseq:NP_207409.1|ensemblbacteria:AAD07688(transcript)|ensemblbacteria:HP_0614(gene)|dip:DIP-3463N|uniprotkb:O25335(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tgSpScAFbkrTcteMgDioyPcKPk885962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:B6B857BEC21FF8F8|rigid:BwmVA4ZJqaFTQ+Xq32hK7x1Ltk4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25335 uniprotkb:P56120 intact:EBI-7574904|intact:MINT-186599|ensemblbacteria:AAD07688 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 psi-mi:o25335_helpy(display_long)|uniprotkb:HP_0614(locus name) psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321219|imex:IM-22256-252 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000969950.1|mint:O25335|refseq:NP_207409.1|ensemblbacteria:AAD07688(transcript)|ensemblbacteria:HP_0614(gene)|dip:DIP-3463N|uniprotkb:O25335(identity) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tgSpScAFbkrTcteMgDioyPcKPk885962 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 intact-crc:C508EDF91A7B6294|rigid:M7MV2pudt7PIBHtHEZ1k+8P8P9I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25321 uniprotkb:O25337 intact:EBI-7577202|intact:MINT-187505|ensemblbacteria:AAD07662 intact:EBI-9264189|ensemblbacteria:AAD07681 psi-mi:o25321_helpy(display_long)|uniprotkb:HP_0599(locus name) psi-mi:chev2_helpy(display_long)|uniprotkb:cheV2(gene name)|psi-mi:cheV2(display_short)|uniprotkb:HP_0616(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321255|imex:IM-22256-254 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000467802.1|mint:O25321|refseq:NP_207394.1|ensemblbacteria:AAD07662(transcript)|ensemblbacteria:HP_0599(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016020"(membrane)|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|interpro:IPR025991|dip:DIP-3485N|uniprotkb:O25321(identity) refseq:WP_000251148.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:NP_207411.1|interpro:IPR036061|ensemblbacteria:AAD07681(transcript)|ensemblbacteria:HP_0616(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|uniprotkb:O25337(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YXk7N41WMjfNAWCxz3+ICouzcqo85962 rogid:5q3QQ+m/lRqHujPj4F9Z+Up7Lw885962 intact-crc:B858A0BA0E9C62FD|rigid:zvrntFoQ271pNJwUrUoIFJYkEqY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25185 uniprotkb:O25338 intact:EBI-7556532|intact:MINT-166764|ensemblbacteria:AAD07506 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 psi-mi:o25185_helpy(display_long)|uniprotkb:HP_0435(locus name) psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321273|imex:IM-22256-255 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25185|ensemblbacteria:AAD07506(transcript)|ensemblbacteria:HP_0435(gene)|go:"GO:0004386"(helicase activity)|interpro:IPR041677|interpro:IPR027417|dip:DIP-3394N|uniprotkb:O25185(identity) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wo8lRDnMrBLGNLrCPjLFcu6Aemc85962 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 intact-crc:EEAD6855F5F7D98A|rigid:e2wJGc5WmIOlBmRI9b8o5T/jsUU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25186 uniprotkb:O25338 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321291|imex:IM-22256-256 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 intact-crc:5CC7AC064F338A30|rigid:cffKC1dbbypR6rXSGIXSq7BUVhQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:O25296 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9264240|ensemblbacteria:AAD07640 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:apt_helpy(display_long)|uniprotkb:apt(gene name)|psi-mi:apt(display_short)|uniprotkb:HP_0572(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321309|imex:IM-22256-257 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) refseq:WP_001006135.1|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR005764(Adenine phosphoribosyl transferase)|refseq:NP_207367.1|interpro:IPR029057|ensemblbacteria:AAD07640(transcript)|ensemblbacteria:HP_0572(gene)|go:"GO:0002055"(adenine binding)|go:"GO:0003999"(adenine phosphoribosyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006166"(purine ribonucleoside salvage)|go:"GO:0006168"(adenine salvage)|go:"GO:0016208"(AMP binding)|go:"GO:0044209"(AMP salvage)|uniprotkb:O25296(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:/dZ4MOTpTw+nT9QG8pJr3NC1h4E85962 intact-crc:EF20082F45F6733A|rigid:87rVEszGMs1unLYO7Pjldm3nwnI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:O25423 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321327|imex:IM-22256-258 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:9CF68433967BEF72|rigid:x8LUvNav0bTShPP9v0KxVAaZtis false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:O25544 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9261745|ensemblbacteria:AAD07925 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:ruvc_helpy(display_long)|uniprotkb:ruvC(gene name)|psi-mi:ruvC(display_short)|uniprotkb:Holliday junction nuclease RuvC(gene name synonym)|uniprotkb:Holliday junction resolvase RuvC(gene name synonym)|uniprotkb:HP_0877(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321345|imex:IM-22256-259 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) refseq:WP_001221153.1|interpro:IPR002176(Crossover junction endodeoxyribonuclease RuvC)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR020563|refseq:NP_207671.1|interpro:IPR036397|ensemblbacteria:AAD07925(transcript)|ensemblbacteria:HP_0877(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008821"(crossover junction endodeoxyribonuclease activity)|uniprotkb:O25544(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:OIge7ikZ0hjuU04ADq18nNHW2NM85962 intact-crc:622C38C111D3BAD9|rigid:dy+GLNu21JLeDjXVyhUyn6hHhJQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:O25676 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321363|imex:IM-22256-260 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:F684B58254D58F97|rigid:QVKMT+D68geemptvqSysJjFJFjk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25766 uniprotkb:O25338 intact:EBI-7612675|intact:MINT-179982|ensemblbacteria:AAD08192 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 psi-mi:trmd_helpy(display_long)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short)|uniprotkb:HP_1148(locus name)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym) psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321381|imex:IM-22256-261 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25766|refseq:WP_000672977.1|refseq:NP_207939.1|ensemblbacteria:AAD08192(transcript)|ensemblbacteria:HP_1148(gene)|go:"GO:0002939"(tRNA N1-guanine methylation)|go:"GO:0005829"(cytosol)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR023148|interpro:IPR029026|interpro:IPR029028|dip:DIP-3681N|uniprotkb:O25766(identity) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Specifically methylates guanosine-37 in various tRNAs comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O9rQL0es2QZVKJFFGMJtNv3l0gE85962 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 intact-crc:FA606C08F16E3F00|rigid:PV4VWyEiHJe0smQPEcAZ61YJs40 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:O25813 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9264319|ensemblbacteria:AAD08259 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:o25813_helpy(display_long)|uniprotkb:HP_1214(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321399|imex:IM-22256-262 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) refseq:WP_001225412.1|refseq:NP_208006.1|interpro:IPR029057|ensemblbacteria:AAD08259(transcript)|ensemblbacteria:HP_1214(gene)|uniprotkb:O25813(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:iqHRK4pl63bBSHNb2A56ofp3Wu885962 intact-crc:3662A2E0D44E385A|rigid:vo7YtdL6vrfYSBKvq09XWyFhTIc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:O25983 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321435|imex:IM-22256-264 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:9CC2A135035AA35E|rigid:EjwV3ynXfeMVggb/eh9bAqq8U6Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:O25852 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321417|imex:IM-22256-263 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 intact-crc:2580EC2138FCDFE8|rigid:Ohqtm4Ukt2dy2xKTul+PyX3OJug false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:P56011 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-7540525|intact:MINT-164265|ensemblbacteria:AAD08337 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:rs4_helpy(display_long)|uniprotkb:rpsD(gene name)|psi-mi:rpsD(display_short)|uniprotkb:HP_1294(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321471|imex:IM-22256-266 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) mint:P56011|refseq:WP_000135250.1|refseq:NP_208086.1|ensemblbacteria:AAD08337(transcript)|ensemblbacteria:HP_1294(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0045903"(positive regulation of translational fidelity)|interpro:IPR001912(Ribosomal protein S4)|interpro:IPR002942(RNA-binding S4)|interpro:IPR005709(Ribosomal protein S4, bacterial-type)|interpro:IPR018079|interpro:IPR022801|interpro:IPR036986|dip:DIP-3324N|uniprotkb:P56011(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit|function:With S5 and S12 plays an important role in translational accuracy figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:nJH43XAod16uIJlWTy/Mi0jAnIo85962 intact-crc:BB337F8A4BDCEAE1|rigid:41Ftye0qPMF3+mLydmq69eh+j+k false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34754 uniprotkb:O25338 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321453|imex:IM-22256-265 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 intact-crc:5D7CA4EE61D051DA|rigid:MZEhMowvPnSglZd75j7ZSwhGgFw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:P56118 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-7579505|intact:MINT-159557|ensemblbacteria:AAD07725 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:rnc_helpy(display_long)|uniprotkb:rnc(gene name)|psi-mi:rnc(display_short)|uniprotkb:HP_0662(locus name)|uniprotkb:Ribonuclease III(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321489|imex:IM-22256-267 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) interpro:IPR036389|interpro:IPR000999(Ribonuclease III)|interpro:IPR011907(Ribonuclease III, bacterial)|refseq:WP_015056054.1|mint:P56118|interpro:IPR014720(Double-stranded RNA-binding-like)|ensemblbacteria:AAD07725(transcript)|ensemblbacteria:HP_0662(gene)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006364"(rRNA processing)|go:"GO:0006396"(RNA processing)|go:"GO:0006397"(mRNA processing)|go:"GO:0008033"(tRNA processing)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0019843"(rRNA binding)|go:"GO:0046872"(metal ion binding)|refseq:NP_207456.1|uniprotkb:P56118(identity) psi-mi:"MI:0469"(intact) comment:mint function:Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:FmAIgmZRecg4dArTq2cFJHeKK4M85962 intact-crc:B7D473D7FAFC5EA0|rigid:cA7UKSDQ57Hke9Dj8ue0WGLvznM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25338 uniprotkb:Q9ZJN3 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9264413|ensemblbacteria:AAD06844 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:q9zjn3_helpj(display_long)|uniprotkb:JHP1272(gene name)|psi-mi:JHP1272(display_short)|uniprotkb:jhp_1272(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321507|imex:IM-22256-268 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) interpro:IPR003356(N-6 DNA methylase)|interpro:IPR029063|interpro:IPR041635|ensemblbacteria:AAD06844(transcript)|ensemblbacteria:jhp_1272(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZJN3(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:2Btvw0CrXOSJ1SBiIVCTxact1hc85963 intact-crc:89B98ADBF2A55888|rigid:f3kjl+Pdt1PEmWopnF980A86x8E false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25790 uniprotkb:O25345 intact:EBI-9261675|ensemblbacteria:AAD08226 intact:EBI-9264436|ensemblbacteria:AAD07699 psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:o25345_helpy(display_long)|uniprotkb:HP_0628(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321525|imex:IM-22256-269 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) interpro:IPR040239|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR006597(Sel1-like)|ensemblbacteria:AAD07699(transcript)|ensemblbacteria:HP_0628(gene)|go:"GO:0005576"(extracellular region)|go:"GO:0008800"(beta-lactamase activity)|go:"GO:0046677"(response to antibiotic)|uniprotkb:O25345(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 rogid:ySCA8mOk2pKmy4s5iHbcCGenuR885962 intact-crc:C13EE98AE086C8C0|rigid:EqKtPKHqQfm2X74DHbcGqbByuHs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25346 uniprotkb:O25664 intact:EBI-9264451|ensemblbacteria:AAD07700 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:o25346_helpy(display_long)|uniprotkb:HP_0629(locus name) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321543|imex:IM-22256-270 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000387635.1|interpro:IPR004919(Protein of unknown function DUF262)|interpro:IPR011089(Protein of unknown function DUF1524 RloF)|refseq:NP_207423.1|ensemblbacteria:AAD07700(transcript)|ensemblbacteria:HP_0629(gene)|uniprotkb:O25346(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:xxyiy3+tiUnrmd9Ca469jTtteqA85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:7C43860DBF3F96BC|rigid:v1zv9arqN8uvU9DjH7h3ITogTCc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:O25346 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9264451|ensemblbacteria:AAD07700 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25346_helpy(display_long)|uniprotkb:HP_0629(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321561|imex:IM-22256-271 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_000387635.1|interpro:IPR004919(Protein of unknown function DUF262)|interpro:IPR011089(Protein of unknown function DUF1524 RloF)|refseq:NP_207423.1|ensemblbacteria:AAD07700(transcript)|ensemblbacteria:HP_0629(gene)|uniprotkb:O25346(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:xxyiy3+tiUnrmd9Ca469jTtteqA85962 intact-crc:ED6BC76F98F89326|rigid:rkBRkCoFxCQS92WO8rXwW5pMIa4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55977 uniprotkb:O25353 intact:EBI-7723667|ensemblbacteria:AAD08555|intact:MINT-4077929 intact:EBI-9264505|ensemblbacteria:AAD07713 psi-mi:nusa_helpy(display_long)|uniprotkb:nusA(gene name)|psi-mi:nusA(display_short)|uniprotkb:HP_1514(locus name) psi-mi:o25353_helpy(display_long)|uniprotkb:HP_0636(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321600|imex:IM-22256-273 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55977|ensemblbacteria:AAD08555(transcript)|ensemblbacteria:HP_1514(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0031564"(transcription antitermination)|interpro:IPR003029(S1, RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR010213(Transcription termination factor NusA)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013735(Transcription factor NusA, N-terminal)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR022967|interpro:IPR025249|interpro:IPR030842|interpro:IPR036555|refseq:WP_000411646.1|refseq:NP_208305.1|dip:DIP-3664N|uniprotkb:P55977(identity) ensemblbacteria:AAD07713(transcript)|ensemblbacteria:HP_0636(gene)|uniprotkb:O25353(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RTwa+hy08+YPTH/PON5T0ltkljM85962 rogid:CoRWt694wSLw6myijkkKtdTCvQo85962 intact-crc:C6F4B26A2A90FF4B|rigid:4kzzve8sifDm3yeP4EDWNBdSN14 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25348 uniprotkb:O25983 intact:EBI-9264487|ensemblbacteria:AAD07691 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25348_helpy(display_long)|uniprotkb:HP_0631(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321582|imex:IM-22256-272 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000499027.1|interpro:IPR001821([Ni-Fe]-hydrogenase, small subunit)|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR027394|refseq:NP_207425.1|interpro:IPR037024|interpro:IPR037148|ensemblbacteria:AAD07691(transcript)|ensemblbacteria:HP_0631(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0009375"(ferredoxin hydrogenase complex)|go:"GO:0016020"(membrane)|go:"GO:0044569"([Ni-Fe] hydrogenase complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|uniprotkb:O25348(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:xBsQN4ok3CaF4+mLyKGmXxLvBuI85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:1CA852FE6AB96837|rigid:O/rrDN4wii37qRR/EFUOI8DN050 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25356 uniprotkb:O25356 intact:EBI-7587122|intact:MINT-186968|ensemblbacteria:AAD07701 intact:EBI-7587122|intact:MINT-186968|ensemblbacteria:AAD07701 psi-mi:quec_helpy(display_long)|uniprotkb:7-cyano-7-carbaguanine synthase(gene name synonym)|uniprotkb:"PreQ(0) synthase"(gene name synonym)|uniprotkb:Queuosine biosynthesis protein QueC(gene name synonym)|uniprotkb:queC(gene name)|psi-mi:queC(display_short)|uniprotkb:HP_0639(locus name) psi-mi:quec_helpy(display_long)|uniprotkb:7-cyano-7-carbaguanine synthase(gene name synonym)|uniprotkb:"PreQ(0) synthase"(gene name synonym)|uniprotkb:Queuosine biosynthesis protein QueC(gene name synonym)|uniprotkb:queC(gene name)|psi-mi:queC(display_short)|uniprotkb:HP_0639(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321618|imex:IM-22256-274 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000435648.1|mint:O25356|refseq:NP_207433.1|ensemblbacteria:AAD07701(transcript)|ensemblbacteria:HP_0639(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0016879"(ligase activity, forming carbon-nitrogen bonds)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR018317|dip:DIP-3566N|uniprotkb:O25356(identity) refseq:WP_000435648.1|mint:O25356|refseq:NP_207433.1|ensemblbacteria:AAD07701(transcript)|ensemblbacteria:HP_0639(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0016879"(ligase activity, forming carbon-nitrogen bonds)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR018317|dip:DIP-3566N|uniprotkb:O25356(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)" comment:mint|function:"Catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d/pwh5KxabOdjz5gbirFgcUmD0A85962 rogid:d/pwh5KxabOdjz5gbirFgcUmD0A85962 intact-crc:12C39F8A8CCA1C63|rigid:lU2F+crOm4CYo15WN3FYgyrkxRE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25357 uniprotkb:O34754 intact:EBI-7692813|ensemblbacteria:AAD07702|intact:MINT-184096 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 psi-mi:o25357_helpy(display_long)|uniprotkb:HP_0640(locus name) psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321636|imex:IM-22256-275 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000462295.1|ensemblbacteria:AAD07702(transcript)|ensemblbacteria:HP_0640(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0006396"(RNA processing)|go:"GO:0016779"(nucleotidyltransferase activity)|interpro:IPR002646(Polynucleotide adenylyltransferase region)|interpro:IPR032828|interpro:IPR043519|mint:O25357|refseq:NP_207434.1|dip:DIP-3063N|uniprotkb:O25357(identity) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1g095l2vXA8D8piEE3ojVFRNLUc85962 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 intact-crc:B01B747B9770C42C|rigid:29GCGJ/M0urcPq/+E5rCYKuMt9I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25362 uniprotkb:O25423 intact:EBI-7570599|intact:MINT-174744|ensemblbacteria:AAD07706 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o25362_helpy(display_long)|uniprotkb:HP_0645(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321654|imex:IM-22256-276 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001210646.1|mint:O25362|refseq:NP_207439.1|ensemblbacteria:AAD07706(transcript)|ensemblbacteria:HP_0645(gene)|interpro:IPR008258(Lytic transglycosylase-like, catalytic)|interpro:IPR023346|dip:DIP-3509N|uniprotkb:O25362(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VBS+UeLJtWQ8HJTPxLAA5EQSP1I85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:EC7C7296FC2D4A18|rigid:tSiyYeEAcHTdW1xe10CPpwsNN8k false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55977 uniprotkb:O25362 intact:EBI-7723667|ensemblbacteria:AAD08555|intact:MINT-4077929 intact:EBI-7570599|intact:MINT-174744|ensemblbacteria:AAD07706 psi-mi:nusa_helpy(display_long)|uniprotkb:nusA(gene name)|psi-mi:nusA(display_short)|uniprotkb:HP_1514(locus name) psi-mi:o25362_helpy(display_long)|uniprotkb:HP_0645(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321672|imex:IM-22256-277 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55977|ensemblbacteria:AAD08555(transcript)|ensemblbacteria:HP_1514(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0031564"(transcription antitermination)|interpro:IPR003029(S1, RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR010213(Transcription termination factor NusA)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013735(Transcription factor NusA, N-terminal)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR022967|interpro:IPR025249|interpro:IPR030842|interpro:IPR036555|refseq:WP_000411646.1|refseq:NP_208305.1|dip:DIP-3664N|uniprotkb:P55977(identity) refseq:WP_001210646.1|mint:O25362|refseq:NP_207439.1|ensemblbacteria:AAD07706(transcript)|ensemblbacteria:HP_0645(gene)|interpro:IPR008258(Lytic transglycosylase-like, catalytic)|interpro:IPR023346|dip:DIP-3509N|uniprotkb:O25362(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RTwa+hy08+YPTH/PON5T0ltkljM85962 rogid:VBS+UeLJtWQ8HJTPxLAA5EQSP1I85962 intact-crc:53824B60EF69F58E|rigid:8O7SZ9fdxyVj4Wy2nWZ51YRnyKg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25363 uniprotkb:Q9ZKK8 intact:EBI-9264580|ensemblbacteria:AAD07707 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25363_helpy(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:HP_0646(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321690|imex:IM-22256-278 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000591482.1|interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|rcsb pdb:3JUJ|rcsb pdb:3JUK|refseq:NP_207440.1|interpro:IPR029044|ensemblbacteria:AAD07707(transcript)|ensemblbacteria:HP_0646(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process)|uniprotkb:O25363(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:S4xD5/rEUE7JDGNdKst64mNe6Uo85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:DF9B605543581379|rigid:vrTxpOf4dFaTYcRcYdOMu/u/zuA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZN05 uniprotkb:O25363 intact:EBI-9264598|ensemblbacteria:AAD05639 intact:EBI-9264580|ensemblbacteria:AAD07707 psi-mi:q9zn05_helpj(display_long)|uniprotkb:jhp_0055(locus name) psi-mi:o25363_helpy(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:HP_0646(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321708|imex:IM-22256-279 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD05639(transcript)|ensemblbacteria:jhp_0055(gene)|uniprotkb:Q9ZN05(identity) refseq:WP_000591482.1|interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|rcsb pdb:3JUJ|rcsb pdb:3JUK|refseq:NP_207440.1|interpro:IPR029044|ensemblbacteria:AAD07707(transcript)|ensemblbacteria:HP_0646(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process)|uniprotkb:O25363(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:q1gOPf6G99EirqvWeAt1bWdK0Mc85963 rogid:S4xD5/rEUE7JDGNdKst64mNe6Uo85962 intact-crc:C363BF72BA2236FE|rigid:DkA99VA42S9BJdd2kZ570N3LApw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25373 uniprotkb:P56033 intact:EBI-9264623|ensemblbacteria:AAD07729 intact:EBI-9264616|ensemblbacteria:AAD08347 psi-mi:o25373_helpy(display_long)|uniprotkb:HP_0659(locus name) psi-mi:rl5_helpy(display_long)|uniprotkb:rplE(gene name)|psi-mi:rplE(display_short)|uniprotkb:HP_1307(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321726|imex:IM-22256-280 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001225999.1|interpro:IPR015391(SurA N-terminal domain)|interpro:IPR027304|refseq:NP_207453.1|ensemblbacteria:AAD07729(transcript)|ensemblbacteria:HP_0659(gene)|uniprotkb:O25373(identity) interpro:IPR031309|interpro:IPR031310|refseq:WP_000467399.1|interpro:IPR002132(Ribosomal protein L5)|interpro:IPR020929|interpro:IPR020930|interpro:IPR022803|refseq:NP_208099.1|ensemblbacteria:AAD08347(transcript)|ensemblbacteria:HP_1307(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56033(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:t8V5ySCFNHT2UfzZtyhAYnO6E2M85962 rogid:rYKq/K5k8tnmmiBofBDebQL9Hz885962 intact-crc:7F42F9E90E3EECC0|rigid:YxJG29n18a5u417FmNrzWqYI48Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25385 uniprotkb:O25018 intact:EBI-7576246|intact:MINT-178240|ensemblbacteria:AAD07740 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 psi-mi:o25385_helpy(display_long)|uniprotkb:HP_0674(locus name) psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321744|imex:IM-22256-281 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25385|ensemblbacteria:AAD07740(transcript)|ensemblbacteria:HP_0674(gene)|dip:DIP-3474N|uniprotkb:O25385(identity) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M9wDVY6YlJ0orcJ4wd1rvlNdB+o85962 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 intact-crc:9DA892089C45BE40|rigid:G1r6Hfn1joOSPY1MvPSpl2DO+ZY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25385 uniprotkb:O25186 intact:EBI-7576246|intact:MINT-178240|ensemblbacteria:AAD07740 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 psi-mi:o25385_helpy(display_long)|uniprotkb:HP_0674(locus name) psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321762|imex:IM-22256-282 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25385|ensemblbacteria:AAD07740(transcript)|ensemblbacteria:HP_0674(gene)|dip:DIP-3474N|uniprotkb:O25385(identity) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M9wDVY6YlJ0orcJ4wd1rvlNdB+o85962 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 intact-crc:D4140EA0A239A67E|rigid:A2Uop3hfSeZRTr5LoG42k2tRSjc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25390 uniprotkb:O25423 intact:EBI-7725635|ensemblbacteria:AAD14883|intact:MINT-185563 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o25390_helpy(display_long)|uniprotkb:HP_0679(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321798|imex:IM-22256-284 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25390|ensemblbacteria:AAD14883(transcript)|ensemblbacteria:HP_0679(gene)|go:"GO:0000166"(nucleotide binding)|interpro:IPR000683(Oxidoreductase, N-terminal)|interpro:IPR004104(Oxidoreductase, C-terminal)|interpro:IPR036291|dip:DIP-3198N|uniprotkb:O25390(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/S5pV/mVLOG7CVRPgkgdAs8iSso85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:462B34DECDFB0229|rigid:vxuSj/4AktaR2KXBr42oy6mNzek false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25385 uniprotkb:O25858 intact:EBI-7576246|intact:MINT-178240|ensemblbacteria:AAD07740 intact:EBI-9264668|ensemblbacteria:AAD08312 psi-mi:o25385_helpy(display_long)|uniprotkb:HP_0674(locus name) psi-mi:nuoi_helpy(display_long)|uniprotkb:nuoI(gene name)|psi-mi:nuoI(display_short)|uniprotkb:NADH dehydrogenase I subunit I(gene name synonym)|uniprotkb:NDH-1 subunit I(gene name synonym)|uniprotkb:HP_1268(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321780|imex:IM-22256-283 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25385|ensemblbacteria:AAD07740(transcript)|ensemblbacteria:HP_0674(gene)|dip:DIP-3474N|uniprotkb:O25385(identity) refseq:WP_001118555.1|interpro:IPR010226(NADH-quinone oxidoreductase, chain I)|interpro:IPR017896|interpro:IPR017900|refseq:NP_208060.1|ensemblbacteria:AAD08312(transcript)|ensemblbacteria:HP_1268(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009060"(aerobic respiration)|go:"GO:0045272"(plasma membrane respiratory chain complex I)|go:"GO:0048038"(quinone binding)|go:"GO:0050136"("NADH dehydrogenase (quinone) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|uniprotkb:O25858(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M9wDVY6YlJ0orcJ4wd1rvlNdB+o85962 rogid:NBTVgKr9aDepBiFHUZ3iO6zG25085962 intact-crc:08A62ED56647F29A|rigid:njKXqN40iiI9OkshVNeKft5pQfs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25488 uniprotkb:O25392 intact:EBI-9263014|ensemblbacteria:AAD07855 intact:EBI-9261537|ensemblbacteria:AAD14888 psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:o25392_helpy(display_long)|uniprotkb:HP_0682(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321816|imex:IM-22256-285 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) refseq:WP_010875521.1|refseq:NP_207476.1|ensemblbacteria:AAD14888(transcript)|ensemblbacteria:HP_0682(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25392(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 rogid:T3j6tVPe/57WhSoOtpu4RuGo/sU85962 intact-crc:6EF9B8CB1E7C7B21|rigid:gHh47V+7zYO+YrrVsbey/XYkUK8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56132 uniprotkb:O25392 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-9261537|ensemblbacteria:AAD14888 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:o25392_helpy(display_long)|uniprotkb:HP_0682(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321834|imex:IM-22256-286 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) refseq:WP_010875521.1|refseq:NP_207476.1|ensemblbacteria:AAD14888(transcript)|ensemblbacteria:HP_0682(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25392(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:T3j6tVPe/57WhSoOtpu4RuGo/sU85962 intact-crc:7B5C0E9E55B1931B|rigid:yUtxV3Bhdc4WgzCG6obgeuplLrQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25404 uniprotkb:O25544 intact:EBI-7513643|intact:MINT-161582|ensemblbacteria:AAD07749 intact:EBI-9261745|ensemblbacteria:AAD07925 psi-mi:o25404_helpy(display_long)|uniprotkb:HP_0697(locus name) psi-mi:ruvc_helpy(display_long)|uniprotkb:ruvC(gene name)|psi-mi:ruvC(display_short)|uniprotkb:Holliday junction nuclease RuvC(gene name synonym)|uniprotkb:Holliday junction resolvase RuvC(gene name synonym)|uniprotkb:HP_0877(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321852|imex:IM-22256-287 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000245373.1|mint:O25404|refseq:NP_207491.1|ensemblbacteria:AAD07749(transcript)|ensemblbacteria:HP_0697(gene)|interpro:IPR016750(Acetone carboxylase, gamma subunit)|dip:DIP-3080N|uniprotkb:O25404(identity) refseq:WP_001221153.1|interpro:IPR002176(Crossover junction endodeoxyribonuclease RuvC)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR020563|refseq:NP_207671.1|interpro:IPR036397|ensemblbacteria:AAD07925(transcript)|ensemblbacteria:HP_0877(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008821"(crossover junction endodeoxyribonuclease activity)|uniprotkb:O25544(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Nz0lqIBw5jbojgJfu5k2Gwt+P0E85962 rogid:OIge7ikZ0hjuU04ADq18nNHW2NM85962 intact-crc:D667F9B86211D3AA|rigid:F8r5DHgOBRqO3DRkEoAGW9XozuQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25408 uniprotkb:O25408 intact:EBI-7587215|intact:MINT-169712|ensemblbacteria:AAD07754 intact:EBI-7587215|intact:MINT-169712|ensemblbacteria:AAD07754 psi-mi:flgr_helpy(display_long)|uniprotkb:flgR(gene name)|psi-mi:flgR(display_short)|uniprotkb:HP_0703(locus name) psi-mi:flgr_helpy(display_long)|uniprotkb:flgR(gene name)|psi-mi:flgR(display_short)|uniprotkb:HP_0703(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321870|imex:IM-22256-288 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000684509.1|mint:O25408|refseq:NP_207497.1|ensemblbacteria:AAD07754(transcript)|ensemblbacteria:HP_0703(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR027417|interpro:IPR029995|dip:DIP-3569N|uniprotkb:O25408(identity) refseq:WP_000684509.1|mint:O25408|refseq:NP_207497.1|ensemblbacteria:AAD07754(transcript)|ensemblbacteria:HP_0703(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR027417|interpro:IPR029995|dip:DIP-3569N|uniprotkb:O25408(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yVGlhawBwA2BkqU+bcg60p3oOP485962 rogid:yVGlhawBwA2BkqU+bcg60p3oOP485962 intact-crc:63CC85D38307075D|rigid:uqo4zpZK2CbTk58xHcoyTwztStA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25678 uniprotkb:O25412 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9264765|ensemblbacteria:AAD07768 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o25412_helpy(display_long)|uniprotkb:HP_0708(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321888|imex:IM-22256-289 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_001022706.1|refseq:NP_207502.1|ensemblbacteria:AAD07768(transcript)|ensemblbacteria:HP_0708(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25412(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:vYnzL3iuenx8l/04k3nMmUppq1U85962 intact-crc:B4593D08CF7DBC98|rigid:1ZME5r6/iTVwdf01qqQDA72Xfdk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25605 uniprotkb:O25419 intact:EBI-7540455|intact:MINT-162381|ensemblbacteria:AAD08006 intact:EBI-7508533|intact:MINT-183607|ensemblbacteria:AAD07767 psi-mi:o25605_helpy(display_long)|uniprotkb:HP_0951(locus name) psi-mi:o25419_helpy(display_long)|uniprotkb:dnaX(gene name)|psi-mi:dnaX(display_short)|uniprotkb:HP_0717(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321924|imex:IM-22256-291 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010875567.1|mint:O25605|refseq:NP_207743.1|ensemblbacteria:AAD08006(transcript)|ensemblbacteria:HP_0951(gene)|interpro:IPR022572|dip:DIP-3323N|uniprotkb:O25605(identity) mint:O25419|refseq:NP_207511.1|refseq:WP_001197484.1|ensemblbacteria:AAD07767(transcript)|ensemblbacteria:HP_0717(gene)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0009360"(DNA polymerase III complex)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR012763(DNA polymerase III, subunits gamma and tau)|interpro:IPR027417|dip:DIP-3354N|uniprotkb:O25419(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fb8SuUfOPbxOJY2LGnuqfKHmmPA85962 rogid:/Y8+23ovqgZESMfCIFGC0Qbv4FY85962 intact-crc:50688BEBC1A4242A|rigid:Fj5pb0WPMBxwNZ1sFFR6MlvEGBs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25416 uniprotkb:Q9ZKK8 intact:EBI-7578728|intact:MINT-161857|ensemblbacteria:AAD07770 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25416_helpy(display_long)|uniprotkb:HP_0712(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321906|imex:IM-22256-290 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25416|ensemblbacteria:AAD07770(transcript)|ensemblbacteria:HP_0712(gene)|interpro:IPR036597|dip:DIP-3489N|uniprotkb:O25416(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yMQ7Snt72ywjFrKRjKWtoFz6SCc85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:6FFC65992E9ECF14|rigid:MAgqG6lkTu5cm7dAVWIZSajKs3U false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25428 uniprotkb:O25428 intact:EBI-9264810|ensemblbacteria:AAD07779 intact:EBI-9264810|ensemblbacteria:AAD07779 psi-mi:tils_helpy(display_long)|uniprotkb:tilS(gene name)|psi-mi:tilS(display_short)|uniprotkb:"tRNA(Ile)-2-lysyl-cytidine synthase"(gene name synonym)|uniprotkb:"tRNA(Ile)-lysidine synthetase"(gene name synonym)|uniprotkb:HP_0728(locus name) psi-mi:tils_helpy(display_long)|uniprotkb:tilS(gene name)|psi-mi:tilS(display_short)|uniprotkb:"tRNA(Ile)-2-lysyl-cytidine synthase"(gene name synonym)|uniprotkb:"tRNA(Ile)-lysidine synthetase"(gene name synonym)|uniprotkb:HP_0728(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321942|imex:IM-22256-292 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010875536.1|interpro:IPR011063(PP-loop)|interpro:IPR012094(Cell cycle control PP-loop ATPase MesJ/YaeO)|interpro:IPR012795("Lysidine-tRNA(Ile) synthetase, N-terminal")|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_207522.1|ensemblbacteria:AAD07779(transcript)|ensemblbacteria:HP_0728(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006400"(tRNA modification)|go:"GO:0016879"(ligase activity, forming carbon-nitrogen bonds)|uniprotkb:O25428(identity) refseq:WP_010875536.1|interpro:IPR011063(PP-loop)|interpro:IPR012094(Cell cycle control PP-loop ATPase MesJ/YaeO)|interpro:IPR012795("Lysidine-tRNA(Ile) synthetase, N-terminal")|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_207522.1|ensemblbacteria:AAD07779(transcript)|ensemblbacteria:HP_0728(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006400"(tRNA modification)|go:"GO:0016879"(ligase activity, forming carbon-nitrogen bonds)|uniprotkb:O25428(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4e1CGgS5n/kypdtKPApQIdw9NyE85962 rogid:4e1CGgS5n/kypdtKPApQIdw9NyE85962 intact-crc:C3C39BC3C2804A24|rigid:0j8Fm8EPh6h2Nyh4lCbwMgT7NV4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25430 uniprotkb:Q9Z3A7 intact:EBI-7554765|intact:MINT-174955|ensemblbacteria:AAD07789 intact:EBI-9264847|ensemblbacteria:AAD06538|ensemblbacteria:AAD06883 psi-mi:o25430_helpy(display_long)|uniprotkb:HP_0730(locus name) psi-mi:q9z3a7_helpj(display_long)|uniprotkb:jhp_0958(locus name)|uniprotkb:jhp_1306(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321978|imex:IM-22256-294 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000491700.1|mint:O25430|refseq:NP_207524.1|ensemblbacteria:AAD07789(transcript)|ensemblbacteria:HP_0730(gene)|dip:DIP-3385N|uniprotkb:O25430(identity) ensemblbacteria:AAD06538(transcript)|ensemblbacteria:AAD06883(transcript)|ensemblbacteria:jhp_0958(gene)|ensemblbacteria:jhp_1306(gene)|uniprotkb:Q9Z3A7(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uqQ/fuo9kUgqKnrhSuLasajkb6885962 rogid:UZGi2Zy3UKsAkuRx4SF2j3p2eak85963 intact-crc:F904AFC474AD4A17|rigid:wVDquPLFvxVYXVtDgVPL4YW19Uc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25430 uniprotkb:O25245 intact:EBI-7554765|intact:MINT-174955|ensemblbacteria:AAD07789 intact:EBI-9264829|ensemblbacteria:AAD07580 psi-mi:o25430_helpy(display_long)|uniprotkb:HP_0730(locus name) psi-mi:o25245_helpy(display_long)|uniprotkb:HP_0504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321960|imex:IM-22256-293 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000491700.1|mint:O25430|refseq:NP_207524.1|ensemblbacteria:AAD07789(transcript)|ensemblbacteria:HP_0730(gene)|dip:DIP-3385N|uniprotkb:O25430(identity) ensemblbacteria:AAD07580(transcript)|ensemblbacteria:HP_0504(gene)|uniprotkb:O25245(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uqQ/fuo9kUgqKnrhSuLasajkb6885962 rogid:OmW4837MeO5ViFwnKcsHURCKcgA85962 intact-crc:BE0DB41A23EF4865|rigid:BmjfD3xo9r21WfqQidxnudv0ZiI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25430 uniprotkb:Q9ZKK8 intact:EBI-7554765|intact:MINT-174955|ensemblbacteria:AAD07789 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25430_helpy(display_long)|uniprotkb:HP_0730(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9321996|imex:IM-22256-295 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000491700.1|mint:O25430|refseq:NP_207524.1|ensemblbacteria:AAD07789(transcript)|ensemblbacteria:HP_0730(gene)|dip:DIP-3385N|uniprotkb:O25430(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uqQ/fuo9kUgqKnrhSuLasajkb6885962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:86B771B9C63AEFFC|rigid:eFHXNaeiB42tUyMbRhbFCdsIWRU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25431 uniprotkb:O25433 intact:EBI-9263549|ensemblbacteria:AAD07790 intact:EBI-9264883|ensemblbacteria:AAD07792 psi-mi:o25431_helpy(display_long)|uniprotkb:HP_0731(locus name) psi-mi:o25433_helpy(display_long)|uniprotkb:HP_0733(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322014|imex:IM-22256-296 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000787447.1|interpro:IPR006073(GTP1/OBG)|interpro:IPR027417|refseq:NP_207525.1|interpro:IPR040576|ensemblbacteria:AAD07790(transcript)|ensemblbacteria:HP_0731(gene)|go:"GO:0005525"(GTP binding)|uniprotkb:O25431(identity) interpro:IPR006073(GTP1/OBG)|interpro:IPR027417|ensemblbacteria:AAD07792(transcript)|ensemblbacteria:HP_0733(gene)|go:"GO:0005525"(GTP binding)|uniprotkb:O25433(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zHDQgn7ZO9QWD5NZUkuaPaSaFNA85962 rogid:EKYSLatRORkONuw5Ozlcom9jL0M85962 intact-crc:FB98A231971A53EF|rigid:qP6U7Oqa5y6KN+gqHo0AvjcWrQw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25431 uniprotkb:Q9ZKK9 intact:EBI-9263549|ensemblbacteria:AAD07790 intact:EBI-9262831|ensemblbacteria:AAD06503 psi-mi:o25431_helpy(display_long)|uniprotkb:HP_0731(locus name) psi-mi:q9zkk9_helpj(display_long)|uniprotkb:jhp_0926(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322032|imex:IM-22256-297 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000787447.1|interpro:IPR006073(GTP1/OBG)|interpro:IPR027417|refseq:NP_207525.1|interpro:IPR040576|ensemblbacteria:AAD07790(transcript)|ensemblbacteria:HP_0731(gene)|go:"GO:0005525"(GTP binding)|uniprotkb:O25431(identity) refseq:WP_001061518.1|interpro:IPR013610(Region of unknown function DUF1738)|ensemblbacteria:AAD06503(transcript)|ensemblbacteria:jhp_0926(gene)|uniprotkb:Q9ZKK9(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zHDQgn7ZO9QWD5NZUkuaPaSaFNA85962 rogid:dTuYLMMyPmCU+EDV95UFdWd/jB485963 intact-crc:7052A999059C5311|rigid:aJrVdt+YKDSUUj3Y+Wc43Z0Q0Kw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25114 uniprotkb:O25438 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 intact:EBI-7580209|intact:MINT-160138|ensemblbacteria:AAD07785 psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:o25438_helpy(display_long)|uniprotkb:HP_0739(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322050|imex:IM-22256-298 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) mint:O25438|refseq:WP_001129409.1|refseq:NP_207533.1|ensemblbacteria:AAD07785(transcript)|ensemblbacteria:HP_0739(gene)|go:"GO:0016787"(hydrolase activity)|interpro:IPR000073(Alpha/beta hydrolase fold-1)|interpro:IPR029058|dip:DIP-3493N|uniprotkb:O25438(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 rogid:sA8O6s8MhbCwXiTVvLkqlNqbxGo85962 intact-crc:D145C942AD82FA4A|rigid:+ZeZvG+woO/qpkbVvbL5RhSv6RI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25440 uniprotkb:O25440 intact:EBI-7569677|intact:MINT-184008|ensemblbacteria:AAD07787 intact:EBI-7569677|intact:MINT-184008|ensemblbacteria:AAD07787 psi-mi:o25440_helpy(display_long)|uniprotkb:HP_0741(locus name) psi-mi:o25440_helpy(display_long)|uniprotkb:HP_0741(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322068|imex:IM-22256-299 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001164436.1|mint:O25440|refseq:NP_207535.1|ensemblbacteria:AAD07787(transcript)|ensemblbacteria:HP_0741(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR001310("Histidine triad (HIT) protein")|interpro:IPR011146(Histidine triad-like motif)|interpro:IPR036265|interpro:IPR039383|go:"GO:0000166"(nucleotide binding)|dip:DIP-3767N|uniprotkb:O25440(identity) refseq:WP_001164436.1|mint:O25440|refseq:NP_207535.1|ensemblbacteria:AAD07787(transcript)|ensemblbacteria:HP_0741(gene)|go:"GO:0003824"(catalytic activity)|interpro:IPR001310("Histidine triad (HIT) protein")|interpro:IPR011146(Histidine triad-like motif)|interpro:IPR036265|interpro:IPR039383|go:"GO:0000166"(nucleotide binding)|dip:DIP-3767N|uniprotkb:O25440(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:FiCkYxOYzYpvHrHIkGG02LDv9nU85962 rogid:FiCkYxOYzYpvHrHIkGG02LDv9nU85962 intact-crc:A89A3B15A532DBB0|rigid:4W7n7qGVVU4keS3XXAdH1R1EEak false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25448 uniprotkb:O25131 intact:EBI-7499990|intact:MINT-160305|ensemblbacteria:AAD07803 intact:EBI-9260429|ensemblbacteria:AAD07436 psi-mi:o25448_helpy(display_long)|uniprotkb:HP_0753(locus name) psi-mi:o25131_helpy(display_long)|uniprotkb:HP_0367(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322087|imex:IM-22256-300 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25448|refseq:WP_001199081.1|refseq:NP_207546.1|ensemblbacteria:AAD07803(transcript)|ensemblbacteria:HP_0753(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR003713(Flagellar protein FliS)|interpro:IPR036584|rcsb pdb:3IQC|rcsb pdb:3K1I|dip:DIP-3458N|uniprotkb:O25448(identity) refseq:WP_000036594.1|refseq:NP_207165.1|ensemblbacteria:AAD07436(transcript)|ensemblbacteria:HP_0367(gene)|uniprotkb:O25131(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:cteyYkuK7MMhuLoDSwYpQRstj3U85962 rogid:vNcwqrbdOwZJqhozwAb0bBST2t085962 intact-crc:316D236592BD458F|rigid:fE9MN+CDT/a+yM7PLtUTA14MQLs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25709 uniprotkb:O25448 intact:EBI-7608416|intact:MINT-160299|ensemblbacteria:AAD08123 intact:EBI-7499990|intact:MINT-160305|ensemblbacteria:AAD07803 psi-mi:o25709_helpy(display_long)|uniprotkb:HP_1076(locus name) psi-mi:o25448_helpy(display_long)|uniprotkb:HP_0753(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322105|imex:IM-22256-301 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000353458.1|mint:O25709|refseq:NP_207867.1|ensemblbacteria:AAD08123(transcript)|ensemblbacteria:HP_1076(gene)|interpro:IPR032411|interpro:IPR038315|rcsb pdb:3K1H|rcsb pdb:3K1I|rcsb pdb:6LEA|dip:DIP-3285N|uniprotkb:O25709(identity) mint:O25448|refseq:WP_001199081.1|refseq:NP_207546.1|ensemblbacteria:AAD07803(transcript)|ensemblbacteria:HP_0753(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR003713(Flagellar protein FliS)|interpro:IPR036584|rcsb pdb:3IQC|rcsb pdb:3K1I|dip:DIP-3458N|uniprotkb:O25448(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:fMWebz6r3muf3EEFKm1/6dzsdZo85962 rogid:cteyYkuK7MMhuLoDSwYpQRstj3U85962 intact-crc:9CC35CC9E5A3D471|rigid:ty0GmDvOVvdhE+E2ILgQqGdzUA4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25448 uniprotkb:O25852 intact:EBI-7499990|intact:MINT-160305|ensemblbacteria:AAD07803 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 psi-mi:o25448_helpy(display_long)|uniprotkb:HP_0753(locus name) psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322123|imex:IM-22256-302 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25448|refseq:WP_001199081.1|refseq:NP_207546.1|ensemblbacteria:AAD07803(transcript)|ensemblbacteria:HP_0753(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR003713(Flagellar protein FliS)|interpro:IPR036584|rcsb pdb:3IQC|rcsb pdb:3K1I|dip:DIP-3458N|uniprotkb:O25448(identity) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:cteyYkuK7MMhuLoDSwYpQRstj3U85962 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 intact-crc:F35A75199A76F74A|rigid:Nfc3DPIEdyrfs26WfYNOE2cPtuM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25094 uniprotkb:O25449 intact:EBI-7584994|intact:MINT-171400|ensemblbacteria:AAD07394 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:pseh_helpy(display_long)|uniprotkb:pseH(gene name)|psi-mi:pseH(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein H(gene name synonym)|uniprotkb:HP_0327(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322141|imex:IM-22256-303 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25094|refseq:WP_000742697.1|refseq:NP_207125.1|ensemblbacteria:AAD07394(transcript)|ensemblbacteria:HP_0327(gene)|go:"GO:0008080"(N-acetyltransferase activity)|interpro:IPR000182(GCN5-related N-acetyltransferase)|interpro:IPR016181(Acyl-CoA N-acyltransferase)|interpro:IPR020036|rcsb pdb:4RI1|dip:DIP-3555N|uniprotkb:O25094(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uDBKnnI5LujCSAw9Z5WaulboR8Y85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:44D0B4A5C32BA30F|rigid:fFxHA9aJhH32v+tej56/7M7hqwo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25449 uniprotkb:O25449 intact:EBI-9264991|ensemblbacteria:AAD07810 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322159|imex:IM-22256-304 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:653011D3C3AF2143|rigid:sO9Ew09XmhpANUh3UKSz8he5f1w false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25449 uniprotkb:O25488 intact:EBI-9264991|ensemblbacteria:AAD07810 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322177|imex:IM-22256-305 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:D096854D5DB2ED62|rigid:yFa1OfVjHJeqlCXpwgRZHvh/HuE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25581 uniprotkb:O25449 intact:EBI-7675108|ensemblbacteria:AAD07977|intact:MINT-177793 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:y924_helpy(display_long)|uniprotkb:HP_0924(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322213|imex:IM-22256-307 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07977(transcript)|ensemblbacteria:HP_0924(gene)|go:"GO:0006725"(cellular aromatic compound metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR004370(4-oxalocrotonate tautomerase)|interpro:IPR014347(Tautomerase)|interpro:IPR018191|rcsb pdb:2ORM|rcsb pdb:3M21|mint:O25581|refseq:NP_207716.1|refseq:WP_001115881.1|dip:DIP-3525N|uniprotkb:O25581(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uTfgVa1jx934RIxFBjUfit8hmqU85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:DC718910EC925923|rigid:noWjB8ZUzp1xtd7oNhdBfqcLBLM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O25449 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322195|imex:IM-22256-306 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:63907F231EBC205B|rigid:S2Inz5mIinawF2sWOhRhrll/1Ok false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:O25449 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322231|imex:IM-22256-308 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:1018A88102446DBC|rigid:jJlBX7ZZ9gNr+rsp2/3mcRMfGC0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25449 uniprotkb:O25983 intact:EBI-9264991|ensemblbacteria:AAD07810 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322249|imex:IM-22256-309 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:243E7BC33793456A|rigid:VlYApWzvVMkgQnwsEn8t6fLbyGc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25450 uniprotkb:O25669 intact:EBI-9265096|ensemblbacteria:AAD07804 intact:EBI-6415953|ensemblbacteria:AAD08067 psi-mi:o25450_helpy(display_long)|uniprotkb:HP_0755(locus name) psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322267|imex:IM-22256-310 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001863447.1|interpro:IPR000594(UBA/THIF-type NAD/FAD binding fold)|refseq:NP_207548.1|interpro:IPR035985|ensemblbacteria:AAD07804(transcript)|ensemblbacteria:HP_0755(gene)|go:"GO:0008641"(ubiquitin-like modifier activating enzyme activity)|go:"GO:0061503"(tRNA threonylcarbamoyladenosine dehydratase)|go:"GO:0061504"(cyclic threonylcarbamoyladenosine biosynthetic process)|uniprotkb:O25450(identity) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JlAOcVOZK9K5E9jov+pIHeysKys85962 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 intact-crc:C526793F6213B987|rigid:TXqAVrh4CzaeGwTnGwduPDN+PHM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56066 uniprotkb:O25450 intact:EBI-7515733|intact:MINT-183175|ensemblbacteria:AAD07101 intact:EBI-9265096|ensemblbacteria:AAD07804 psi-mi:clps_helpy(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:HP_0032(locus name) psi-mi:o25450_helpy(display_long)|uniprotkb:HP_0755(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322285|imex:IM-22256-311 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56066|refseq:WP_000784920.1|refseq:NP_206834.1|ensemblbacteria:AAD07101(transcript)|ensemblbacteria:HP_0032(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051087"(chaperone binding)|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|dip:DIP-3107N|uniprotkb:P56066(identity) refseq:WP_001863447.1|interpro:IPR000594(UBA/THIF-type NAD/FAD binding fold)|refseq:NP_207548.1|interpro:IPR035985|ensemblbacteria:AAD07804(transcript)|ensemblbacteria:HP_0755(gene)|go:"GO:0008641"(ubiquitin-like modifier activating enzyme activity)|go:"GO:0061503"(tRNA threonylcarbamoyladenosine dehydratase)|go:"GO:0061504"(cyclic threonylcarbamoyladenosine biosynthetic process)|uniprotkb:O25450(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Involved in the modulation of the specificity of the clpAP-mediated ATP-dependent protein degradation - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:24XzmUMqcQd9MuwsrPr67hcPl5s85962 rogid:JlAOcVOZK9K5E9jov+pIHeysKys85962 intact-crc:48296BFDB7CD1003|rigid:C18YDFzjott6bS7jPap3Ujdj+3I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25775 uniprotkb:O25456 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 intact:EBI-9265129|ensemblbacteria:AAD07811 psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:o25456_helpy(display_long)|uniprotkb:HP_0761(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322303|imex:IM-22256-312 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) interpro:IPR002698(5-formyltetrahydrofolate cyclo-ligase)|refseq:NP_207554.1|interpro:IPR024185|interpro:IPR037171|ensemblbacteria:AAD07811(transcript)|ensemblbacteria:HP_0761(gene)|uniprotkb:O25456(identity) psi-mi:"MI:0469"(intact) function:May have metalloprotease activity|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 rogid:XUkH7H3/5bkbN1M2hoxfdWJ+Jrg85962 intact-crc:781858D94A9EF455|rigid:TNQnENW7RhhhHFUsg+WbAsuKygA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26065 uniprotkb:O25456 intact:EBI-7666717|ensemblbacteria:AAD08580|intact:MINT-4074429 intact:EBI-9265129|ensemblbacteria:AAD07811 psi-mi:o26065_helpy(display_long)|uniprotkb:HP_1540(locus name) psi-mi:o25456_helpy(display_long)|uniprotkb:HP_0761(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322321|imex:IM-22256-313 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006311(Twin-arginine translocation pathway signal)|ensemblbacteria:AAD08580(transcript)|ensemblbacteria:HP_1540(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0022900"(electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:1902600"(proton transmembrane transport)|mint:O26065|refseq:WP_000763654.1|interpro:IPR014349(Rieske iron-sulphur protein)|interpro:IPR017941|refseq:NP_208331.1|interpro:IPR036922|uniprotkb:O26065(identity) interpro:IPR002698(5-formyltetrahydrofolate cyclo-ligase)|refseq:NP_207554.1|interpro:IPR024185|interpro:IPR037171|ensemblbacteria:AAD07811(transcript)|ensemblbacteria:HP_0761(gene)|uniprotkb:O25456(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Cs0Ms4ihvKf78JKv5PK+c7UWB+085962 rogid:XUkH7H3/5bkbN1M2hoxfdWJ+Jrg85962 intact-crc:774E908D149C8A63|rigid:U80ikfiOK9F/mN5Wh92aIfXT0g8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25460 uniprotkb:O25495 intact:EBI-7582456|intact:MINT-161653|ensemblbacteria:AAD07814 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 psi-mi:o25460_helpy(display_long)|uniprotkb:HP_0765(locus name) psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322357|imex:IM-22256-315 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25460|refseq:WP_000392451.1|refseq:NP_207558.1|ensemblbacteria:AAD07814(transcript)|ensemblbacteria:HP_0765(gene)|dip:DIP-3506N|uniprotkb:O25460(identity) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4aH/jdIEo9z9zYgpM6/NZt12WSI85962 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 intact-crc:211ABE1EA7CD1DE2|rigid:DKuUB9VWI9TnRWE+Z6s+t5uimZQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25460 uniprotkb:O25423 intact:EBI-7582456|intact:MINT-161653|ensemblbacteria:AAD07814 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o25460_helpy(display_long)|uniprotkb:HP_0765(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322339|imex:IM-22256-314 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25460|refseq:WP_000392451.1|refseq:NP_207558.1|ensemblbacteria:AAD07814(transcript)|ensemblbacteria:HP_0765(gene)|dip:DIP-3506N|uniprotkb:O25460(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4aH/jdIEo9z9zYgpM6/NZt12WSI85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:03C359842EB76284|rigid:5L8wqPF0BNvQcd3qQ/zf4TFxaD4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O25462 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322393|imex:IM-22256-317 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:F9D29622D1273C27|rigid:zajYayOwRcVdan/Cw4Iaxc+W3zM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24980 uniprotkb:O25462 intact:EBI-7552025|intact:MINT-165751|ensemblbacteria:AAD07248 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:psei_helpy(display_long)|uniprotkb:pseI(gene name)|psi-mi:pseI(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein I(gene name synonym)|uniprotkb:HP_0178(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322375|imex:IM-22256-316 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941291.1|mint:O24980|refseq:NP_206977.1|ensemblbacteria:AAD07248(transcript)|ensemblbacteria:HP_0178(gene)|go:"GO:0016051"(carbohydrate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0047444"(N-acylneuraminate-9-phosphate synthase activity)|go:"GO:0070085"(glycosylation)|interpro:IPR006190(Antifreeze-like/N-acetylneuraminic acid synthase C-terminal)|interpro:IPR013132(N-acetylneuraminic acid synthase, N-terminal)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013974(SAF domain)|interpro:IPR020030|interpro:IPR036732|dip:DIP-3369N|uniprotkb:O24980(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uZp/YwItniAjhnfvNYjPS7d1M+U85962 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:4DE3C5D1A2E4FFE4|rigid:zGDjyJTEgTXopPOgCCp1vK48h2M false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25186 uniprotkb:O25462 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322411|imex:IM-22256-318 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:B06E0A8AEF5B2419|rigid:hHCRc9RbzP6uT4Z85qHmRDie5QI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25265 uniprotkb:O25462 intact:EBI-9260592|ensemblbacteria:AAD07597 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322429|imex:IM-22256-319 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:C7F8AB25420B5BB4|rigid:8k1P8/5tsHPs4mA4mIcAi9dcdmc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O25462 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322447|imex:IM-22256-320 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:FD5639838B4A80CE|rigid:7pZVjOBJU6TKji89oPQ3F5W8bqE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25692 uniprotkb:O25462 intact:EBI-7574216|intact:MINT-182315|ensemblbacteria:AAD08098 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:lpxc_helpy(display_long)|uniprotkb:lpxC(gene name)|psi-mi:lpxC(display_short)|uniprotkb:UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase(gene name synonym)|uniprotkb:HP_1052(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322465|imex:IM-22256-321 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25692|refseq:WP_000815275.1|refseq:NP_207843.1|ensemblbacteria:AAD08098(transcript)|ensemblbacteria:HP_1052(gene)|go:"GO:0008759"(UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0103117"(UDP-3-O-acyl-N-acetylglucosamine deacetylase activity)|interpro:IPR004463(UDP-3-O-acyl N-acetylglucosamine deacetylase)|interpro:IPR011334(UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal)|interpro:IPR015870(UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal)|interpro:IPR020568|dip:DIP-3457N|uniprotkb:O25692(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) function:Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Qtz7RUkn8lsaMXT9vhnsK4r3OIk85962 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:D34F8B8AB52C7467|rigid:iOjOrUeQbo7UiDDd4nma6mzTw2k false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25462 uniprotkb:O25790 intact:EBI-9265192|ensemblbacteria:AAD07827 intact:EBI-9261675|ensemblbacteria:AAD08226 psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322483|imex:IM-22256-322 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 intact-crc:10E3D4975508C575|rigid:KeWf6n9Mksj2b9MT61A3WrcLpoE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25462 uniprotkb:Q9ZN32 intact:EBI-9265192|ensemblbacteria:AAD07827 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322501|imex:IM-22256-323 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:82EA26187C4C6B56|rigid:NlUMD6lPXbfA4j2Ky2VRYXf9FlU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25724 uniprotkb:O25464 intact:EBI-7548352|intact:MINT-160184|ensemblbacteria:AAD08138 intact:EBI-9265318|ensemblbacteria:AAD07820 psi-mi:o25724_helpy(display_long)|uniprotkb:HP_1092(locus name) psi-mi:o25464_helpy(display_long)|uniprotkb:HP_0772(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322519|imex:IM-22256-324 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001179202.1|mint:O25724|refseq:NP_207883.1|ensemblbacteria:AAD08138(transcript)|ensemblbacteria:HP_1092(gene)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|interpro:IPR020013|interpro:IPR037925|dip:DIP-3379N|uniprotkb:O25724(identity) refseq:WP_000961130.1|interpro:IPR002508(Cell wall hydrolase/autolysin, catalytic)|refseq:NP_207565.1|ensemblbacteria:AAD07820(transcript)|ensemblbacteria:HP_0772(gene)|go:"GO:0008745"(N-acetylmuramoyl-L-alanine amidase activity)|go:"GO:0009253"(peptidoglycan catabolic process)|go:"GO:0030288"(outer membrane-bounded periplasmic space)|uniprotkb:O25464(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lhG6xCVqF0mT6zi7sJ1idmjyEA485962 rogid:K+n/QXzSwV7j8yRfMKRRsH6Oqi485962 intact-crc:022C3A0A3744AFEA|rigid:YUPDVYGn2UM/KumbH0KVKNo6NpQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25469 uniprotkb:P56462 intact:EBI-7501223|intact:MINT-188145|ensemblbacteria:AAD07833 intact:EBI-7505292|intact:MINT-164654|ensemblbacteria:AAD07973 psi-mi:o25469_helpy(display_long)|uniprotkb:HP_0780(locus name) psi-mi:gch1_helpy(display_long)|uniprotkb:folE(gene name)|psi-mi:folE(display_short)|uniprotkb:HP_0928(locus name)|uniprotkb:GTP cyclohydrolase I(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322537|imex:IM-22256-325 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25469|refseq:WP_010875544.1|refseq:NP_207573.1|ensemblbacteria:AAD07833(transcript)|ensemblbacteria:HP_0780(gene)|dip:DIP-3759N|uniprotkb:O25469(identity) mint:P56462|refseq:WP_000427004.1|refseq:NP_207720.1|go:"GO:0008270"(zinc ion binding)|go:"GO:0035998"(7,8-dihydroneopterin 3'-triphosphate biosynthetic process)|go:"GO:0046654"(tetrahydrofolate biosynthetic process)|interpro:IPR001474(GTP cyclohydrolase I)|interpro:IPR018234|interpro:IPR020602|interpro:IPR043133|interpro:IPR043134|ensemblbacteria:AAD07973(transcript)|ensemblbacteria:HP_0928(gene)|go:"GO:0003934"(GTP cyclohydrolase I activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006729"(tetrahydrobiopterin biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|dip:DIP-3586N|uniprotkb:P56462(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:T79IvYyIaKGuB1dKySph4yiJ0Ek85962 rogid:JNWwOUF1bUepzK0YVn3ctvDZiY885962 intact-crc:C7D1503FB806F00E|rigid:AV5/Iiu4MFHAgX6ZzUOWnc9f9ns false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25476 uniprotkb:O25546 intact:EBI-7536200|intact:MINT-187427|ensemblbacteria:AAD07831 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:o25476_helpy(display_long)|uniprotkb:HP_0787(locus name) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322555|imex:IM-22256-326 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25476|refseq:WP_001133691.1|refseq:NP_207580.1|ensemblbacteria:AAD07831(transcript)|ensemblbacteria:HP_0787(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044874"(lipoprotein localization to outer membrane)|go:"GO:0098797"(plasma membrane protein complex)|interpro:IPR003838(Protein of unknown function DUF214, permase predicted)|interpro:IPR025857|dip:DIP-3305N|uniprotkb:O25476(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:s8jLM/7kzobXKagh3+mqFuvEVnQ85962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:0BC1CA328CBF6118|rigid:Wt6eBje5yJ8kApWdcrkwVg5ViYk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25476 uniprotkb:P56132 intact:EBI-7536200|intact:MINT-187427|ensemblbacteria:AAD07831 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 psi-mi:o25476_helpy(display_long)|uniprotkb:HP_0787(locus name) psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322573|imex:IM-22256-327 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25476|refseq:WP_001133691.1|refseq:NP_207580.1|ensemblbacteria:AAD07831(transcript)|ensemblbacteria:HP_0787(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044874"(lipoprotein localization to outer membrane)|go:"GO:0098797"(plasma membrane protein complex)|interpro:IPR003838(Protein of unknown function DUF214, permase predicted)|interpro:IPR025857|dip:DIP-3305N|uniprotkb:O25476(identity) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:s8jLM/7kzobXKagh3+mqFuvEVnQ85962 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 intact-crc:95A25CC11410DC5A|rigid:GWW3WfL+zLZhGt806HBjHossqoA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25476 uniprotkb:Q9ZN32 intact:EBI-7536200|intact:MINT-187427|ensemblbacteria:AAD07831 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25476_helpy(display_long)|uniprotkb:HP_0787(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322591|imex:IM-22256-328 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25476|refseq:WP_001133691.1|refseq:NP_207580.1|ensemblbacteria:AAD07831(transcript)|ensemblbacteria:HP_0787(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044874"(lipoprotein localization to outer membrane)|go:"GO:0098797"(plasma membrane protein complex)|interpro:IPR003838(Protein of unknown function DUF214, permase predicted)|interpro:IPR025857|dip:DIP-3305N|uniprotkb:O25476(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:s8jLM/7kzobXKagh3+mqFuvEVnQ85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:4CBFDF61EBD512C1|rigid:3azN6DIqRje6BpgKd5gwmKVAniM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25482 uniprotkb:P56422 intact:EBI-7674271|ensemblbacteria:AAD07857|intact:MINT-169562 intact:EBI-7674385|ensemblbacteria:AAD07850|intact:MINT-169161 psi-mi:o25482_helpy(display_long)|uniprotkb:HP_0801(locus name) psi-mi:moae_helpy(display_long)|uniprotkb:moaE(gene name)|psi-mi:moaE(display_short)|uniprotkb:HP_0800(locus name)|uniprotkb:Molybdenum cofactor biosynthesis protein E(gene name synonym)|uniprotkb:Molybdopterin-converting factor large subunit(gene name synonym)|uniprotkb:Molybdopterin-converting factor subunit 2(gene name synonym)|uniprotkb:MPT synthase subunit 2(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322609|imex:IM-22256-329 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07857(transcript)|ensemblbacteria:HP_0801(gene)|interpro:IPR003749(ThiamineS)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR016155(Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp)|rcsb pdb:3RPF|mint:O25482|refseq:NP_207594.1|refseq:WP_010875547.1|dip:DIP-3524N|uniprotkb:O25482(identity) ensemblbacteria:AAD07850(transcript)|ensemblbacteria:HP_0800(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0030366"(molybdopterin synthase activity)|interpro:IPR003448(Molybdopterin biosynthesis MoaE)|interpro:IPR036563|rcsb pdb:3RPF|mint:P56422|refseq:NP_207593.1|refseq:WP_000912676.1|dip:DIP-3522N|uniprotkb:P56422(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:fdxTC9sTiVtTBwoqzH+Cpqj4Y0k85962 rogid:mODLSKLl57eA0erPm1aXRjwb4rQ85962 intact-crc:5F7F68A1DA4CD41C|rigid:cXpsztoCwIBZ27uX5XZ8fG84UkY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25484 uniprotkb:O25484 intact:EBI-9265411|ensemblbacteria:AAD07852 intact:EBI-9265411|ensemblbacteria:AAD07852 psi-mi:ribb_helpy(display_long)|uniprotkb:ribB(gene name)|psi-mi:ribB(display_short)|uniprotkb:HP_0804(locus name) psi-mi:ribb_helpy(display_long)|uniprotkb:ribB(gene name)|psi-mi:ribB(display_short)|uniprotkb:HP_0804(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322627|imex:IM-22256-330 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000601458.1|interpro:IPR000422(3,4-Dihydroxy-2-butanone 4-phosphate synthase)|interpro:IPR017945|refseq:NP_207597.1|interpro:IPR032677|interpro:IPR036144|ensemblbacteria:AAD07852(transcript)|ensemblbacteria:HP_0804(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003935"(GTP cyclohydrolase II activity)|go:"GO:0005829"(cytosol)|go:"GO:0008686"(3,4-dihydroxy-2-butanone-4-phosphate synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0030145"(manganese ion binding)|uniprotkb:O25484(identity) refseq:WP_000601458.1|interpro:IPR000422(3,4-Dihydroxy-2-butanone 4-phosphate synthase)|interpro:IPR017945|refseq:NP_207597.1|interpro:IPR032677|interpro:IPR036144|ensemblbacteria:AAD07852(transcript)|ensemblbacteria:HP_0804(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003935"(GTP cyclohydrolase II activity)|go:"GO:0005829"(cytosol)|go:"GO:0008686"(3,4-dihydroxy-2-butanone-4-phosphate synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0030145"(manganese ion binding)|uniprotkb:O25484(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:33t5LmDs9XoB94TmqlXKnmhSHsw85962 rogid:33t5LmDs9XoB94TmqlXKnmhSHsw85962 intact-crc:B4A39E15BEA14E39|rigid:DpP6UXzQ7s/L4KPd4xh8/ZIWf/0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25486 uniprotkb:O25079 intact:EBI-7582760|intact:MINT-169664|ensemblbacteria:AAD07859 intact:EBI-9261846|ensemblbacteria:AAD07375 psi-mi:o25486_helpy(display_long)|uniprotkb:HP_0806(locus name) psi-mi:o25079_helpy(display_long)|uniprotkb:HP_0309(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322645|imex:IM-22256-331 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25486|refseq:WP_000883304.1|refseq:NP_207599.1|ensemblbacteria:AAD07859(transcript)|ensemblbacteria:HP_0806(gene)|interpro:IPR002725(Protein of unknown function DUF45)|dip:DIP-3527N|uniprotkb:O25486(identity) refseq:WP_000850703.1|interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|refseq:NP_207107.1|interpro:IPR036526|ensemblbacteria:AAD07375(transcript)|ensemblbacteria:HP_0309(gene)|go:"GO:0006807"(nitrogen compound metabolic process)|uniprotkb:O25079(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AgwxcMWQR3sHtaeXsXuu0lRheEo85962 rogid:lcGytOQVURF99Y15h6GCIjVPVcA85962 intact-crc:D2A3723AA0D7C747|rigid:Cg3NhGWaIMlcllA5NpyOHWNhxj4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:O25486 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-7582760|intact:MINT-169664|ensemblbacteria:AAD07859 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25486_helpy(display_long)|uniprotkb:HP_0806(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322663|imex:IM-22256-332 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) mint:O25486|refseq:WP_000883304.1|refseq:NP_207599.1|ensemblbacteria:AAD07859(transcript)|ensemblbacteria:HP_0806(gene)|interpro:IPR002725(Protein of unknown function DUF45)|dip:DIP-3527N|uniprotkb:O25486(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:AgwxcMWQR3sHtaeXsXuu0lRheEo85962 intact-crc:3692068D1D7A61A3|rigid:vCYKIE6r/GVLCQCtoKg2eOncSRU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O25488 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322681|imex:IM-22256-333 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:1EAED36BC2953FB1|rigid:Qxmz9nJSxaB00+wFes+Nzs05EcQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25488 uniprotkb:O25488 intact:EBI-9263014|ensemblbacteria:AAD07855 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322699|imex:IM-22256-334 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:33FBBD92851A32BA|rigid:HaW2Qnv4hTNG1PxEbCoTOPTnYeU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25113 uniprotkb:O25489 intact:EBI-7633054|ensemblbacteria:AAD07417|intact:MINT-187451 intact:EBI-7625228|intact:MINT-166091|ensemblbacteria:AAD07860 psi-mi:o25113_helpy(display_long)|uniprotkb:HP_0346(locus name) psi-mi:o25489_helpy(display_long)|uniprotkb:HP_0809(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322717|imex:IM-22256-335 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07417(transcript)|ensemblbacteria:HP_0346(gene)|mint:O25113|refseq:WP_010875469.1|dip:DIP-3740N|uniprotkb:O25113(identity) refseq:WP_000797017.1|mint:O25489|refseq:NP_207602.1|ensemblbacteria:AAD07860(transcript)|ensemblbacteria:HP_0809(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0016021"(integral component of membrane)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR005503(Flagellar basal body-associated protein FliL)|dip:DIP-3721N|uniprotkb:O25489(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3tDHTPf4i6qTBg5T+5R4VwGUUfo85962 rogid:PYhY4+N97djvWcnTQwxjpxd+ptQ85962 intact-crc:99D35C84DC64FC81|rigid:IjvNWD2gKQqZ1+hbip+GSs3QMZA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25490 uniprotkb:O06914 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322735|imex:IM-22256-336 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:EB3E1197C3C8F78D|rigid:BmX98QsyZayEpRM6VaDU/Edxf+I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25490 uniprotkb:O25310 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322753|imex:IM-22256-337 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 intact-crc:E277D14CF5A6876A|rigid:d2CqjiwWtWG3b/iHo2l1z1gc+c0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25490 uniprotkb:O25933 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322771|imex:IM-22256-338 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 intact-crc:65B2E2A8D3E2A9CB|rigid:hZh4ZQWZSTnkI/l944iiDbOtJf4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25490 uniprotkb:O25940 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322789|imex:IM-22256-339 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 intact-crc:2489A869A6648518|rigid:8vkscvfffxhqYCxGJ+bIPBbPo0o false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25490 uniprotkb:O34995 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322807|imex:IM-22256-340 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:9925CEE38833C01F|rigid:C6D8xmguttNSpJHjmjeFxB18wIk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25490 uniprotkb:P94845 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322825|imex:IM-22256-341 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 intact-crc:AEDDDC1F63485E6E|rigid:qvPOgffUEuGpx21m5jJpZ9t0YI8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25490 uniprotkb:Q9ZMH3 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-9265592|ensemblbacteria:AAD05823 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:q9zmh3_helpj(display_long)|uniprotkb:jhp_0247(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322843|imex:IM-22256-342 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) refseq:WP_010882505.1|interpro:IPR041551|ensemblbacteria:AAD05823(transcript)|ensemblbacteria:jhp_0247(gene)|uniprotkb:Q9ZMH3(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:bBvE/oCHqYoN/0oAcM3TD1stXro85963 intact-crc:6DAC7D3BF43BA08F|rigid:Zn2Lw/53tRyCd1W6Ri0+4MVdmdY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:O25492 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-9265613|ensemblbacteria:AAD07871 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25492_helpy(display_long)|uniprotkb:HP_0812(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322861|imex:IM-22256-343 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) refseq:WP_001256047.1|interpro:IPR003788(Protein of unknown function DUF185)|refseq:NP_207605.1|interpro:IPR029063|interpro:IPR038375|ensemblbacteria:AAD07871(transcript)|ensemblbacteria:HP_0812(gene)|go:"GO:0035243"(protein-arginine omega-N symmetric methyltransferase activity)|uniprotkb:O25492(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:JnV+qvLuNMK31f2kER0EVA/f11Y85962 intact-crc:75A361A284924C54|rigid:5pyUmDuFum2ZSVx757eyB5U2Evs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O25281 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-7561260|intact:MINT-4065553|ensemblbacteria:AAD07621 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o25281_helpy(display_long)|uniprotkb:HP_0555(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322897|imex:IM-22256-345 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) refseq:WP_000792823.1|mint:O25281|refseq:NP_207350.1|ensemblbacteria:AAD07621(transcript)|ensemblbacteria:HP_0555(gene)|uniprotkb:O25281(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:j1Ircb978rDdJr0b+ERbTW6corQ85962 intact-crc:2BCEFCAE987F3991|rigid:rtowsVeSIxAwfBtd1O5Sdv5nW/M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25494 uniprotkb:O25983 intact:EBI-9265631|ensemblbacteria:AAD07863 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25494_helpy(display_long)|uniprotkb:HP_0814(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322879|imex:IM-22256-344 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000952609.1|interpro:IPR000594(UBA/THIF-type NAD/FAD binding fold)|refseq:NP_207607.1|interpro:IPR035985|ensemblbacteria:AAD07863(transcript)|ensemblbacteria:HP_0814(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0008641"(ubiquitin-like modifier activating enzyme activity)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016779"(nucleotidyltransferase activity)|uniprotkb:O25494(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:pu8EtJtbrFabUjzacN4oH7+MxrE85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:1834A411CABC9797|rigid:ZAolsI00FOjxqmH011qmE6W/iD0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:Q9ZKI0 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9265661|ensemblbacteria:AAD06537 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:q9zki0_helpj(display_long)|uniprotkb:jhp_0955(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322915|imex:IM-22256-346 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD06537(transcript)|ensemblbacteria:jhp_0955(gene)|uniprotkb:Q9ZKI0(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:qVtLDPLjKL1Da6oe/FPOLK7FogE85963 intact-crc:607E9E319368DBE1|rigid:qw7GnE4SMAFLzePCVtvK+6Q0pcg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25496 uniprotkb:O25497 intact:EBI-7504166|intact:MINT-161828|ensemblbacteria:AAD07866 intact:EBI-527822|ensemblbacteria:AAD07867 psi-mi:o25496_helpy(display_long)|uniprotkb:HP_0818(locus name) psi-mi:o25497_helpy(display_long)|uniprotkb:HP_0819(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322933|imex:IM-22256-347 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25496|refseq:WP_000901317.1|refseq:NP_207611.1|ensemblbacteria:AAD07866(transcript)|ensemblbacteria:HP_0818(gene)|go:"GO:0022857"(transmembrane transporter activity)|go:"GO:0031460"(glycine betaine transport)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|interpro:IPR000515(Binding-protein-dependent transport systems inner membrane component)|interpro:IPR007210(ABC-type glycine betaine transport system, substrate-binding region)|interpro:IPR035906|dip:DIP-3623N|uniprotkb:O25496(identity) dip:DIP-3528N|refseq:NP_207612.1|refseq:WP_000659451.1|ensemblbacteria:AAD07867(transcript)|ensemblbacteria:HP_0819(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|mint:O25497|uniprotkb:O25497(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:HthobeOoDT+aGQOeuc3tD112mDI85962 rogid:HXAaTZ+uvIjajLFvYPSjVqpieI085962 intact-crc:0254B0B064DE8B7D|rigid:af9cwskddLVjiAH3NQCxiTLI2/U false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25310 uniprotkb:O25498 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-9262160|ensemblbacteria:AAD07873 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:o25498_helpy(display_long)|uniprotkb:HP_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322951|imex:IM-22256-348 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) refseq:WP_000437145.1|refseq:NP_207613.1|ensemblbacteria:AAD07873(transcript)|ensemblbacteria:HP_0820(gene)|uniprotkb:O25498(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:cBhLCWEqc9/QdJfjtCvo7ltwdJs85962 intact-crc:347F5E3E5A8D14B5|rigid:stzkTahb1dRlO+imgMobyWF/9jE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25638 uniprotkb:O25498 intact:EBI-7601848|intact:MINT-166704|ensemblbacteria:AAD08035 intact:EBI-9262160|ensemblbacteria:AAD07873 psi-mi:o25638_helpy(display_long)|uniprotkb:HP_0990(locus name) psi-mi:o25498_helpy(display_long)|uniprotkb:HP_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322969|imex:IM-22256-349 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25638|ensemblbacteria:AAD08035(transcript)|ensemblbacteria:HP_0990(gene)|dip:DIP-3613N|uniprotkb:O25638(identity) refseq:WP_000437145.1|refseq:NP_207613.1|ensemblbacteria:AAD07873(transcript)|ensemblbacteria:HP_0820(gene)|uniprotkb:O25498(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rVJ82mdECNMncWYnxmuqK6CBT7w85962 rogid:cBhLCWEqc9/QdJfjtCvo7ltwdJs85962 intact-crc:047743D09C01DEBB|rigid:c4s4bRF4zJ8B/m4GQLhBLeHV9Rw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0X4 uniprotkb:O25501 intact:EBI-7607319|uniprotkb:P56019|uniprotkb:Q9R787|intact:MINT-160916|ensemblbacteria:AAD08241 intact:EBI-9265727|ensemblbacteria:AAD07877 psi-mi:rs12_helpy(display_long)|uniprotkb:rpsL(gene name)|psi-mi:rpsL(display_short)|uniprotkb:HP_1197(locus name) psi-mi:o25501_helpy(display_long)|uniprotkb:HP_0827(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9322987|imex:IM-22256-350 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001142321.1|interpro:IPR005679(Ribosomal protein S12, bacterial-type)|interpro:IPR006032(Ribosomal protein S12/S23)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|mint:P0A0X4|refseq:NP_207988.1|ensemblbacteria:AAD08241(transcript)|ensemblbacteria:HP_1197(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0046677"(response to antibiotic)|uniprotkb:P0A0X4(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|refseq:WP_001244602.1|interpro:IPR000504(RNA recognition motif, RNP-1)|rcsb pdb:2KI2|refseq:NP_207620.1|interpro:IPR035979|ensemblbacteria:AAD07877(transcript)|ensemblbacteria:HP_0827(gene)|go:"GO:0003676"(nucleic acid binding)|uniprotkb:O25501(identity) psi-mi:"MI:0469"(intact) function:With S4 and S5 plays an important role in translational accuracy|comment:mint|function:Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nGLO1EcHlMoe/ASWRqCunOgMDOo85962 rogid:sfNnYO/kc0ESmi/WSX9wb7PUfIA85962 intact-crc:734F7DCA541D572C|rigid:ugW5xySVU4MVhUSVGbZtFzNRk38 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25501 uniprotkb:P56009 intact:EBI-9265727|ensemblbacteria:AAD07877 intact:EBI-9265742|ensemblbacteria:AAD08594 psi-mi:o25501_helpy(display_long)|uniprotkb:HP_0827(locus name) psi-mi:rs2_helpy(display_long)|uniprotkb:rpsB(gene name)|psi-mi:rpsB(display_short)|uniprotkb:HP_1554(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323005|imex:IM-22256-351 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|refseq:WP_001244602.1|interpro:IPR000504(RNA recognition motif, RNP-1)|rcsb pdb:2KI2|refseq:NP_207620.1|interpro:IPR035979|ensemblbacteria:AAD07877(transcript)|ensemblbacteria:HP_0827(gene)|go:"GO:0003676"(nucleic acid binding)|uniprotkb:O25501(identity) refseq:WP_000258283.1|interpro:IPR001865(Ribosomal protein S2)|interpro:IPR005706(Ribosomal protein S2, bacterial-type)|interpro:IPR018130|interpro:IPR023591|refseq:NP_208345.1|ensemblbacteria:AAD08594(transcript)|ensemblbacteria:HP_1554(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|uniprotkb:P56009(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:sfNnYO/kc0ESmi/WSX9wb7PUfIA85962 rogid:OzIfZb6/oK3Wdm6uNucFtY2Kn+Y85962 intact-crc:4DE3A218F5E297B3|rigid:iJ9TILr/QOHqDbyPdba5VScPgeU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56011 uniprotkb:O25501 intact:EBI-7540525|intact:MINT-164265|ensemblbacteria:AAD08337 intact:EBI-9265727|ensemblbacteria:AAD07877 psi-mi:rs4_helpy(display_long)|uniprotkb:rpsD(gene name)|psi-mi:rpsD(display_short)|uniprotkb:HP_1294(locus name) psi-mi:o25501_helpy(display_long)|uniprotkb:HP_0827(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323023|imex:IM-22256-352 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56011|refseq:WP_000135250.1|refseq:NP_208086.1|ensemblbacteria:AAD08337(transcript)|ensemblbacteria:HP_1294(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0045903"(positive regulation of translational fidelity)|interpro:IPR001912(Ribosomal protein S4)|interpro:IPR002942(RNA-binding S4)|interpro:IPR005709(Ribosomal protein S4, bacterial-type)|interpro:IPR018079|interpro:IPR022801|interpro:IPR036986|dip:DIP-3324N|uniprotkb:P56011(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|refseq:WP_001244602.1|interpro:IPR000504(RNA recognition motif, RNP-1)|rcsb pdb:2KI2|refseq:NP_207620.1|interpro:IPR035979|ensemblbacteria:AAD07877(transcript)|ensemblbacteria:HP_0827(gene)|go:"GO:0003676"(nucleic acid binding)|uniprotkb:O25501(identity) psi-mi:"MI:0469"(intact) comment:mint|function:One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit|function:With S5 and S12 plays an important role in translational accuracy - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nJH43XAod16uIJlWTy/Mi0jAnIo85962 rogid:sfNnYO/kc0ESmi/WSX9wb7PUfIA85962 intact-crc:D523EC21B49CE11E|rigid:iCOonMCVDeR8GgL86450vwrV+1U false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56030 uniprotkb:O25501 intact:EBI-7498075|intact:MINT-162822|ensemblbacteria:AAD08355 intact:EBI-9265727|ensemblbacteria:AAD07877 psi-mi:rl2_helpy(display_long)|uniprotkb:rplB(gene name)|psi-mi:rplB(display_short)|uniprotkb:HP_1316(locus name) psi-mi:o25501_helpy(display_long)|uniprotkb:HP_0827(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323041|imex:IM-22256-353 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56030|refseq:WP_000985807.1|refseq:NP_208108.1|ensemblbacteria:AAD08355(transcript)|ensemblbacteria:HP_1316(gene)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0016740"(transferase activity)|go:"GO:0019843"(rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR002171(Ribosomal protein L2)|interpro:IPR005880(Ribosomal protein L2, bacterial-type)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR014726(Ribosomal protein L2, domain 3)|interpro:IPR022666|interpro:IPR022669|interpro:IPR022671|dip:DIP-3298N|uniprotkb:P56030(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|refseq:WP_001244602.1|interpro:IPR000504(RNA recognition motif, RNP-1)|rcsb pdb:2KI2|refseq:NP_207620.1|interpro:IPR035979|ensemblbacteria:AAD07877(transcript)|ensemblbacteria:HP_0827(gene)|go:"GO:0003676"(nucleic acid binding)|uniprotkb:O25501(identity) psi-mi:"MI:0469"(intact) comment:mint|function:One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DAHWIzZN77ksP2RpeWZMAvZmjpU85962 rogid:sfNnYO/kc0ESmi/WSX9wb7PUfIA85962 intact-crc:D07325583DD25981|rigid:DirpZFPh3Nu93v3UdSASZR9eh1A false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P66269 uniprotkb:O25501 intact:EBI-9265809|uniprotkb:P56057|ensemblbacteria:AAD07195 intact:EBI-9265727|ensemblbacteria:AAD07877 psi-mi:rl35_helpy(display_long)|uniprotkb:rpmI(gene name)|psi-mi:rpmI(display_short)|uniprotkb:HP_0125(locus name) psi-mi:o25501_helpy(display_long)|uniprotkb:HP_0827(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323077|imex:IM-22256-355 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001125542.1|interpro:IPR001706(Ribosomal protein L35)|interpro:IPR018265|interpro:IPR021137|refseq:NP_206925.1|interpro:IPR037229|ensemblbacteria:AAD07195(transcript)|ensemblbacteria:HP_0125(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P66269(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|refseq:WP_001244602.1|interpro:IPR000504(RNA recognition motif, RNP-1)|rcsb pdb:2KI2|refseq:NP_207620.1|interpro:IPR035979|ensemblbacteria:AAD07877(transcript)|ensemblbacteria:HP_0827(gene)|go:"GO:0003676"(nucleic acid binding)|uniprotkb:O25501(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nqv/YwVuZmlPcA4kNES9/1bGRFY85962 rogid:sfNnYO/kc0ESmi/WSX9wb7PUfIA85962 intact-crc:4E1132515E81BF66|rigid:8/8H6eszQmjjCJ9MVapWe9dW+00 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56040 uniprotkb:O25501 intact:EBI-7696797|ensemblbacteria:AAD08342|intact:MINT-163293 intact:EBI-9265727|ensemblbacteria:AAD07877 psi-mi:rl15_helpy(display_long)|uniprotkb:rplO(gene name)|psi-mi:rplO(display_short)|uniprotkb:HP_1301(locus name) psi-mi:o25501_helpy(display_long)|uniprotkb:HP_0827(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323059|imex:IM-22256-354 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08342(transcript)|ensemblbacteria:HP_1301(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR005749(Ribosomal protein L15, bacterial-type)|interpro:IPR021131|interpro:IPR030878|interpro:IPR036227|mint:P56040|refseq:NP_208093.2|refseq:WP_000522167.1|dip:DIP-3703N|uniprotkb:P56040(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|refseq:WP_001244602.1|interpro:IPR000504(RNA recognition motif, RNP-1)|rcsb pdb:2KI2|refseq:NP_207620.1|interpro:IPR035979|ensemblbacteria:AAD07877(transcript)|ensemblbacteria:HP_0827(gene)|go:"GO:0003676"(nucleic acid binding)|uniprotkb:O25501(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Binds to the 23S rRNA - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VXi1Jb0lI96wpWoIZQ8ySB/vjk085962 rogid:sfNnYO/kc0ESmi/WSX9wb7PUfIA85962 intact-crc:880963ABB67BE3DE|rigid:sHZhl9Uzp/NqwflrdeBddIxyQJU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O25502 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9265829|ensemblbacteria:AAD07881 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:coae_helpy(display_long)|uniprotkb:coaE(gene name)|psi-mi:coaE(display_short)|uniprotkb:Dephosphocoenzyme A kinase(gene name synonym)|uniprotkb:HP_0831(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323095|imex:IM-22256-356 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_000243282.1|interpro:IPR001977(Dephospho-CoA kinase)|interpro:IPR027417|refseq:NP_207624.1|ensemblbacteria:AAD07881(transcript)|ensemblbacteria:HP_0831(gene)|go:"GO:0004140"(dephospho-CoA kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0015937"(coenzyme A biosynthetic process)|uniprotkb:O25502(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:xQF9cQZoIBhRSlBMoC5zEOhXFaQ85962 intact-crc:AD4C095BFF3536EF|rigid:ubUI3aZNWowfQjEjCigGJWG/J7Y false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25979 uniprotkb:O25505 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-7553419|intact:MINT-161131|ensemblbacteria:AAD07883 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:der_helpy(display_long)|uniprotkb:der(gene name)|psi-mi:der(display_short)|uniprotkb:GTP-binding protein EngA(gene name synonym)|uniprotkb:engA(gene name synonym)|uniprotkb:HP_0834(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323113|imex:IM-22256-357 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) refseq:WP_001097820.1|mint:O25505|refseq:NP_207627.1|ensemblbacteria:AAD07883(transcript)|ensemblbacteria:HP_0834(gene)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0005525"(GTP binding)|go:"GO:0043022"(ribosome binding)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006073(GTP1/OBG)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR016484(GTP-binding, EngA)|interpro:IPR027417|interpro:IPR031166|interpro:IPR032859|dip:DIP-3386N|uniprotkb:O25505(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:GTPase of unknown physiological role figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:KxqD8HYnC+bTS52zC/PKiIU4Qco85962 intact-crc:53FD69A658F2741C|rigid:IRPx7W0R+uhunbh44W7NWVfU9Ss false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25506 uniprotkb:O25506 intact:EBI-9263618|ensemblbacteria:AAD07885 intact:EBI-9263618|ensemblbacteria:AAD07885 psi-mi:dbh_helpy(display_long)|uniprotkb:hup(gene name)|psi-mi:hup(display_short)|uniprotkb:HP_0835(locus name) psi-mi:dbh_helpy(display_long)|uniprotkb:hup(gene name)|psi-mi:hup(display_short)|uniprotkb:HP_0835(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323131|imex:IM-22256-358 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001029082.1|interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:NP_207628.1|ensemblbacteria:AAD07885(transcript)|ensemblbacteria:HP_0835(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0030261"(chromosome condensation)|uniprotkb:O25506(identity) refseq:WP_001029082.1|interpro:IPR000119(Histone-like bacterial DNA-binding protein)|interpro:IPR010992(IHF-like DNA-binding)|refseq:NP_207628.1|ensemblbacteria:AAD07885(transcript)|ensemblbacteria:HP_0835(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0030261"(chromosome condensation)|uniprotkb:O25506(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GQXhyhcmi/G0HX+TP3OKFgHMZbU85962 rogid:GQXhyhcmi/G0HX+TP3OKFgHMZbU85962 intact-crc:BC6C22F01FC5A9FB|rigid:3dqKom2vF9KZoE6chEH5te5VouQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25511 uniprotkb:O25511 intact:EBI-9265878|ensemblbacteria:AAD07887 intact:EBI-9265878|ensemblbacteria:AAD07887 psi-mi:pseb_helpy(display_long)|uniprotkb:pseB(gene name)|psi-mi:pseB(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein B(gene name synonym)|uniprotkb:UDP-GlcNAc-inverting 4,6-dehydratase(gene name synonym)|uniprotkb:flaA1(gene name synonym)|uniprotkb:HP_0840(locus name) psi-mi:pseb_helpy(display_long)|uniprotkb:pseB(gene name)|psi-mi:pseB(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein B(gene name synonym)|uniprotkb:UDP-GlcNAc-inverting 4,6-dehydratase(gene name synonym)|uniprotkb:flaA1(gene name synonym)|uniprotkb:HP_0840(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323149|imex:IM-22256-359 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132631.1|interpro:IPR003869(Polysaccharide biosynthesis protein CapD)|interpro:IPR020025|rcsb pdb:2GN4|rcsb pdb:2GN6|rcsb pdb:2GN8|rcsb pdb:2GN9|rcsb pdb:2GNA|refseq:NP_207633.1|interpro:IPR036291|ensemblbacteria:AAD07887(transcript)|ensemblbacteria:HP_0840(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0016829"(lyase activity)|uniprotkb:O25511(identity) refseq:WP_001132631.1|interpro:IPR003869(Polysaccharide biosynthesis protein CapD)|interpro:IPR020025|rcsb pdb:2GN4|rcsb pdb:2GN6|rcsb pdb:2GN8|rcsb pdb:2GN9|rcsb pdb:2GNA|refseq:NP_207633.1|interpro:IPR036291|ensemblbacteria:AAD07887(transcript)|ensemblbacteria:HP_0840(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0016829"(lyase activity)|uniprotkb:O25511(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Tk4s7lUa3GUrnnfUD2fSw+KUJrs85962 rogid:Tk4s7lUa3GUrnnfUD2fSw+KUJrs85962 intact-crc:FB9E6E67BF39F167|rigid:emoNapPatj6UZjKVQUSouKAGFEM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25674 uniprotkb:O25511 intact:EBI-7559878|intact:MINT-4065399|ensemblbacteria:AAD08074 intact:EBI-9265878|ensemblbacteria:AAD07887 psi-mi:o25674_helpy(display_long)|uniprotkb:HP_1030(locus name) psi-mi:pseb_helpy(display_long)|uniprotkb:pseB(gene name)|psi-mi:pseB(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein B(gene name synonym)|uniprotkb:UDP-GlcNAc-inverting 4,6-dehydratase(gene name synonym)|uniprotkb:flaA1(gene name synonym)|uniprotkb:HP_0840(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323167|imex:IM-22256-360 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|mint:O25674|refseq:WP_001150629.1|interpro:IPR036429|refseq:NP_207820.1|interpro:IPR028976|ensemblbacteria:AAD08074(transcript)|ensemblbacteria:HP_1030(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|rcsb pdb:5XRW|uniprotkb:O25674(identity) refseq:WP_001132631.1|interpro:IPR003869(Polysaccharide biosynthesis protein CapD)|interpro:IPR020025|rcsb pdb:2GN4|rcsb pdb:2GN6|rcsb pdb:2GN8|rcsb pdb:2GN9|rcsb pdb:2GNA|refseq:NP_207633.1|interpro:IPR036291|ensemblbacteria:AAD07887(transcript)|ensemblbacteria:HP_0840(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0016829"(lyase activity)|uniprotkb:O25511(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wh43hksoYo8r/6ZiCbBBRMIq0ko85962 rogid:Tk4s7lUa3GUrnnfUD2fSw+KUJrs85962 intact-crc:DFDA47B6CEC92351|rigid:ElWamP3ZW3idtdyDI9UEdPOiKl0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26095 uniprotkb:O25513 intact:EBI-9265909|ensemblbacteria:AAD08615 intact:EBI-9260843|ensemblbacteria:AAD07896 psi-mi:o26095_helpy(display_long)|uniprotkb:HP_1575(locus name) psi-mi:o25513_helpy(display_long)|uniprotkb:HP_0842(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323185|imex:IM-22256-361 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001044050.1|interpro:IPR004683(FlhB-like)|interpro:IPR006135(Type III secretion exporter)|refseq:NP_208366.1|interpro:IPR029025|ensemblbacteria:AAD08615(transcript)|ensemblbacteria:HP_1575(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|uniprotkb:O26095(identity) refseq:WP_000888450.1|refseq:NP_207635.1|ensemblbacteria:AAD07896(transcript)|ensemblbacteria:HP_0842(gene)|uniprotkb:O25513(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:xBG9LemlM3q5CRwoedP7u3QRAtg85962 rogid:+KQssvSMk8xQbfSSdSgOV+W+VeY85962 intact-crc:2813C7FC5B417619|rigid:b7RTgXRYZYYpJZWxGZ2TbFDByLI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25516 uniprotkb:O25516 intact:EBI-9260346|ensemblbacteria:AAD07891 intact:EBI-9260346|ensemblbacteria:AAD07891 psi-mi:thim_helpy(display_long)|uniprotkb:thiM(gene name)|psi-mi:thiM(display_short)|uniprotkb:4-methyl-5-beta-hydroxyethylthiazole kinase(gene name synonym)|uniprotkb:HP_0845(locus name) psi-mi:thim_helpy(display_long)|uniprotkb:thiM(gene name)|psi-mi:thiM(display_short)|uniprotkb:4-methyl-5-beta-hydroxyethylthiazole kinase(gene name synonym)|uniprotkb:HP_0845(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323203|imex:IM-22256-362 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207638.1|interpro:IPR000417(Hydroxyethylthiazole kinase)|interpro:IPR029056|refseq:WP_015056066.1|ensemblbacteria:AAD07891(transcript)|ensemblbacteria:HP_0845(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004417"(hydroxyethylthiazole kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|uniprotkb:O25516(identity) refseq:NP_207638.1|interpro:IPR000417(Hydroxyethylthiazole kinase)|interpro:IPR029056|refseq:WP_015056066.1|ensemblbacteria:AAD07891(transcript)|ensemblbacteria:HP_0845(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004417"(hydroxyethylthiazole kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|uniprotkb:O25516(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:n+j3gQHERWJWRYiTZXSVhxdo2HE85962 rogid:n+j3gQHERWJWRYiTZXSVhxdo2HE85962 intact-crc:346AC5F83F060F47|rigid:KAorr9BAzYfWwfy+A5f4BFMFGzI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25521 uniprotkb:O25519 intact:EBI-7503998|intact:MINT-161863|ensemblbacteria:AAD07898 intact:EBI-9265942|ensemblbacteria:AAD07897 psi-mi:o25521_helpy(display_long)|uniprotkb:HP_0850(locus name) psi-mi:o25519_helpy(display_long)|uniprotkb:HP_0848(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323221|imex:IM-22256-363 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25521|refseq:WP_010875553.1|refseq:NP_207643.1|ensemblbacteria:AAD07898(transcript)|ensemblbacteria:HP_0850(gene)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR004546(Restriction endonuclease, type I, EcoRI, M subunit)|interpro:IPR022749|interpro:IPR029063|interpro:IPR038333|go:"GO:0003677"(DNA binding)|dip:DIP-3358N|uniprotkb:O25521(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_207641.1|ensemblbacteria:AAD07897(transcript)|ensemblbacteria:HP_0848(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O25519(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3zNXyde6jJs8umSgKs89w8QFYrg85962 rogid:RPUVm8wh6OTcYujMRcjEMj8IrdE85962 intact-crc:E6B4A0B2F59762E3|rigid:nEnj75RNalT+/jq7OmLBkD+QPRA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25521 uniprotkb:O25519 intact:EBI-7503998|intact:MINT-161863|ensemblbacteria:AAD07898 intact:EBI-9265942|ensemblbacteria:AAD07897 psi-mi:o25521_helpy(display_long)|uniprotkb:HP_0850(locus name) psi-mi:o25519_helpy(display_long)|uniprotkb:HP_0848(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323257|imex:IM-22256-365 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25521|refseq:WP_010875553.1|refseq:NP_207643.1|ensemblbacteria:AAD07898(transcript)|ensemblbacteria:HP_0850(gene)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR004546(Restriction endonuclease, type I, EcoRI, M subunit)|interpro:IPR022749|interpro:IPR029063|interpro:IPR038333|go:"GO:0003677"(DNA binding)|dip:DIP-3358N|uniprotkb:O25521(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_207641.1|ensemblbacteria:AAD07897(transcript)|ensemblbacteria:HP_0848(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O25519(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3zNXyde6jJs8umSgKs89w8QFYrg85962 rogid:RPUVm8wh6OTcYujMRcjEMj8IrdE85962 intact-crc:D8C7328F07066B5D|rigid:nEnj75RNalT+/jq7OmLBkD+QPRA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25521 uniprotkb:O25479 intact:EBI-7503998|intact:MINT-161863|ensemblbacteria:AAD07898 intact:EBI-9260912|ensemblbacteria:AAD07838 psi-mi:o25521_helpy(display_long)|uniprotkb:HP_0850(locus name) psi-mi:o25479_helpy(display_long)|uniprotkb:HP_0790(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323239|imex:IM-22256-364 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25521|refseq:WP_010875553.1|refseq:NP_207643.1|ensemblbacteria:AAD07898(transcript)|ensemblbacteria:HP_0850(gene)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR004546(Restriction endonuclease, type I, EcoRI, M subunit)|interpro:IPR022749|interpro:IPR029063|interpro:IPR038333|go:"GO:0003677"(DNA binding)|dip:DIP-3358N|uniprotkb:O25521(identity) refseq:WP_000548846.1|interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_207583.1|ensemblbacteria:AAD07838(transcript)|ensemblbacteria:HP_0790(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O25479(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3zNXyde6jJs8umSgKs89w8QFYrg85962 rogid:3vMD4PEETybdKkrbPWu3T1Std2U85962 intact-crc:2287F921E3BD75B9|rigid:rfzQ/oIcK+2ooGL4ZCrhwfRwC3w false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25521 uniprotkb:P67708 intact:EBI-7503998|intact:MINT-161863|ensemblbacteria:AAD07898 intact:EBI-9261334|uniprotkb:O26079|ensemblbacteria:AAD08597 psi-mi:o25521_helpy(display_long)|uniprotkb:HP_0850(locus name) psi-mi:flie_helpy(display_long)|uniprotkb:fliE(gene name)|psi-mi:fliE(display_short)|uniprotkb:HP_1557(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323275|imex:IM-22256-366 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25521|refseq:WP_010875553.1|refseq:NP_207643.1|ensemblbacteria:AAD07898(transcript)|ensemblbacteria:HP_0850(gene)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR004546(Restriction endonuclease, type I, EcoRI, M subunit)|interpro:IPR022749|interpro:IPR029063|interpro:IPR038333|go:"GO:0003677"(DNA binding)|dip:DIP-3358N|uniprotkb:O25521(identity) refseq:WP_001147918.1|interpro:IPR001624(Flagellar hook-basal body complex protein FliE)|refseq:NP_208348.1|ensemblbacteria:AAD08597(transcript)|ensemblbacteria:HP_1557(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005198"(structural molecule activity)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|uniprotkb:P67708(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3zNXyde6jJs8umSgKs89w8QFYrg85962 rogid:97Tu4wBlhYAvtjGql+Y0ycyhyps85962 intact-crc:8259778C56A8F988|rigid:GeVmlSONoj03ts90M3lDDaY1tbw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25521 uniprotkb:Q9ZL54 intact:EBI-7503998|intact:MINT-161863|ensemblbacteria:AAD07898 intact:EBI-9266008|ensemblbacteria:AAD06303 psi-mi:o25521_helpy(display_long)|uniprotkb:HP_0850(locus name) psi-mi:q9zl54_helpj(display_long)|uniprotkb:hsdS_4(gene name)|psi-mi:hsdS_4(display_short)|uniprotkb:jhp_0726(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323293|imex:IM-22256-367 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25521|refseq:WP_010875553.1|refseq:NP_207643.1|ensemblbacteria:AAD07898(transcript)|ensemblbacteria:HP_0850(gene)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR004546(Restriction endonuclease, type I, EcoRI, M subunit)|interpro:IPR022749|interpro:IPR029063|interpro:IPR038333|go:"GO:0003677"(DNA binding)|dip:DIP-3358N|uniprotkb:O25521(identity) refseq:WP_001033117.1|interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|ensemblbacteria:AAD06303(transcript)|ensemblbacteria:jhp_0726(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:Q9ZL54(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3zNXyde6jJs8umSgKs89w8QFYrg85962 rogid:fHPVqxx5HajGqGcx4xLaY8dtxqc85963 intact-crc:5734CB3DB160786A|rigid:XSEGMqpaZbUTE2ka5+d7+Uamd+k false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25523 uniprotkb:Q9ZKK8 intact:EBI-7519279|intact:MINT-170179|ensemblbacteria:AAD07913 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25523_helpy(display_long)|uniprotkb:HP_0852(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323311|imex:IM-22256-368 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25523|refseq:WP_000804194.1|refseq:NP_207645.1|ensemblbacteria:AAD07913(transcript)|ensemblbacteria:HP_0852(gene)|interpro:IPR007759(DNA-directed RNA polymerase delta subunit)|dip:DIP-3179N|uniprotkb:O25523(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bwLYnzFG2iFVDIRuBjwIbZtFIIs85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:4EF55D8FF1A669CB|rigid:4FvGonY+76t4K29dTYA6YSK3KhA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25528 uniprotkb:O25528 intact:EBI-7719377|ensemblbacteria:AAD07903|intact:MINT-4077758 intact:EBI-7719377|ensemblbacteria:AAD07903|intact:MINT-4077758 psi-mi:gmha_helpy(display_long)|uniprotkb:gmhA(gene name)|psi-mi:gmhA(display_short)|uniprotkb:HP_0857(locus name)|uniprotkb:Sedoheptulose 7-phosphate isomerase(gene name synonym) psi-mi:gmha_helpy(display_long)|uniprotkb:gmhA(gene name)|psi-mi:gmhA(display_short)|uniprotkb:HP_0857(locus name)|uniprotkb:Sedoheptulose 7-phosphate isomerase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323329|imex:IM-22256-369 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25528|ensemblbacteria:AAD07903(transcript)|ensemblbacteria:HP_0857(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008968"(D-sedoheptulose 7-phosphate isomerase activity)|go:"GO:0009244"(lipopolysaccharide core region biosynthetic process)|go:"GO:0097367"(carbohydrate derivative binding)|go:"GO:2001061"(D-glycero-D-manno-heptose 7-phosphate biosynthetic process)|interpro:IPR001347("Sugar isomerase (SIS)")|interpro:IPR004515(Phosphoheptose isomerase)|interpro:IPR035461|refseq:WP_000566736.1|refseq:NP_207651.1|dip:DIP-3683N|uniprotkb:O25528(identity) mint:O25528|ensemblbacteria:AAD07903(transcript)|ensemblbacteria:HP_0857(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008968"(D-sedoheptulose 7-phosphate isomerase activity)|go:"GO:0009244"(lipopolysaccharide core region biosynthetic process)|go:"GO:0097367"(carbohydrate derivative binding)|go:"GO:2001061"(D-glycero-D-manno-heptose 7-phosphate biosynthetic process)|interpro:IPR001347("Sugar isomerase (SIS)")|interpro:IPR004515(Phosphoheptose isomerase)|interpro:IPR035461|refseq:WP_000566736.1|refseq:NP_207651.1|dip:DIP-3683N|uniprotkb:O25528(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-mannoheptose 7-phosphate comment:mint|function:Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-mannoheptose 7-phosphate figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gOhyQxHYroVH03+V3x7TAE6feOM85962 rogid:gOhyQxHYroVH03+V3x7TAE6feOM85962 intact-crc:0BDB7D60EA42502B|rigid:+ZWpMAguX6KiP31WH4wBEg6dVik false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25581 uniprotkb:O25533 intact:EBI-7675108|ensemblbacteria:AAD07977|intact:MINT-177793 intact:EBI-528040|ensemblbacteria:AAD07916 psi-mi:y924_helpy(display_long)|uniprotkb:HP_0924(locus name) psi-mi:coax_helpy(display_long)|uniprotkb:Pantothenic acid kinase(gene name synonym)|uniprotkb:PanK-III(gene name synonym)|uniprotkb:coaX(gene name)|psi-mi:coaX(display_short)|uniprotkb:coaA(gene name synonym)|uniprotkb:HP_0862(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323347|imex:IM-22256-370 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07977(transcript)|ensemblbacteria:HP_0924(gene)|go:"GO:0006725"(cellular aromatic compound metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR004370(4-oxalocrotonate tautomerase)|interpro:IPR014347(Tautomerase)|interpro:IPR018191|rcsb pdb:2ORM|rcsb pdb:3M21|mint:O25581|refseq:NP_207716.1|refseq:WP_001115881.1|dip:DIP-3525N|uniprotkb:O25581(identity) refseq:NP_207656.1|ensemblbacteria:AAD07916(transcript)|ensemblbacteria:HP_0862(gene)|go:"GO:0004594"(pantothenate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR004619(Bordetella pertussis Bvg accessory factor)|interpro:IPR043129|refseq:WP_001111589.1|mint:O25533|dip:DIP-3271N|uniprotkb:O25533(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uTfgVa1jx934RIxFBjUfit8hmqU85962 rogid:AX3zdOAcOb24UaK7JJDR89lzKlI85962 intact-crc:2D81FD145826ED97|rigid:toPeMv+13RY+1vo8lOR+Efq/tGs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25533 uniprotkb:O25756 intact:EBI-528040|ensemblbacteria:AAD07916 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:coax_helpy(display_long)|uniprotkb:Pantothenic acid kinase(gene name synonym)|uniprotkb:PanK-III(gene name synonym)|uniprotkb:coaX(gene name)|psi-mi:coaX(display_short)|uniprotkb:coaA(gene name synonym)|uniprotkb:HP_0862(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323365|imex:IM-22256-371 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207656.1|ensemblbacteria:AAD07916(transcript)|ensemblbacteria:HP_0862(gene)|go:"GO:0004594"(pantothenate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR004619(Bordetella pertussis Bvg accessory factor)|interpro:IPR043129|refseq:WP_001111589.1|mint:O25533|dip:DIP-3271N|uniprotkb:O25533(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AX3zdOAcOb24UaK7JJDR89lzKlI85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:6035812643ED4216|rigid:uODS51eRRBsCR0wYPQqME1jYads false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25775 uniprotkb:O25533 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 intact:EBI-528040|ensemblbacteria:AAD07916 psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:coax_helpy(display_long)|uniprotkb:Pantothenic acid kinase(gene name synonym)|uniprotkb:PanK-III(gene name synonym)|uniprotkb:coaX(gene name)|psi-mi:coaX(display_short)|uniprotkb:coaA(gene name synonym)|uniprotkb:HP_0862(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323383|imex:IM-22256-372 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) refseq:NP_207656.1|ensemblbacteria:AAD07916(transcript)|ensemblbacteria:HP_0862(gene)|go:"GO:0004594"(pantothenate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR004619(Bordetella pertussis Bvg accessory factor)|interpro:IPR043129|refseq:WP_001111589.1|mint:O25533|dip:DIP-3271N|uniprotkb:O25533(identity) psi-mi:"MI:0469"(intact) function:May have metalloprotease activity|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 rogid:AX3zdOAcOb24UaK7JJDR89lzKlI85962 intact-crc:E4E7DF8361691E7E|rigid:Eq84+zp5M4iAG8d9mVF3G0ak2Dw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25538 uniprotkb:O24873 intact:EBI-7585008|intact:MINT-160800|ensemblbacteria:AAD07919 intact:EBI-7493488|intact:MINT-163255|ensemblbacteria:AAD07107 psi-mi:o25538_helpy(display_long)|uniprotkb:HP_0868(locus name) psi-mi:o24873_helpy(display_long)|uniprotkb:HP_0030(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323401|imex:IM-22256-373 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25538|refseq:WP_001154698.1|refseq:NP_207662.1|ensemblbacteria:AAD07919(transcript)|ensemblbacteria:HP_0868(gene)|dip:DIP-3554N|uniprotkb:O25538(identity) mint:O24873|refseq:NP_206832.1|refseq:WP_000926158.1|ensemblbacteria:AAD07107(transcript)|ensemblbacteria:HP_0030(gene)|dip:DIP-3499N|uniprotkb:O24873(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M4igvNFEg0gj/fsP6z1GfvXnaqk85962 rogid:/WA2RxKnmOtAZF3txrMosHKaCn085962 intact-crc:E53B1A7A5EB2BD76|rigid:BfM2yDkM4LCp5RTxTwL7FTstA2M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25538 uniprotkb:O25544 intact:EBI-7585008|intact:MINT-160800|ensemblbacteria:AAD07919 intact:EBI-9261745|ensemblbacteria:AAD07925 psi-mi:o25538_helpy(display_long)|uniprotkb:HP_0868(locus name) psi-mi:ruvc_helpy(display_long)|uniprotkb:ruvC(gene name)|psi-mi:ruvC(display_short)|uniprotkb:Holliday junction nuclease RuvC(gene name synonym)|uniprotkb:Holliday junction resolvase RuvC(gene name synonym)|uniprotkb:HP_0877(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323419|imex:IM-22256-374 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25538|refseq:WP_001154698.1|refseq:NP_207662.1|ensemblbacteria:AAD07919(transcript)|ensemblbacteria:HP_0868(gene)|dip:DIP-3554N|uniprotkb:O25538(identity) refseq:WP_001221153.1|interpro:IPR002176(Crossover junction endodeoxyribonuclease RuvC)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR020563|refseq:NP_207671.1|interpro:IPR036397|ensemblbacteria:AAD07925(transcript)|ensemblbacteria:HP_0877(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008821"(crossover junction endodeoxyribonuclease activity)|uniprotkb:O25544(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M4igvNFEg0gj/fsP6z1GfvXnaqk85962 rogid:OIge7ikZ0hjuU04ADq18nNHW2NM85962 intact-crc:88784C149974CF51|rigid:7XVqZd8ZWRXBUO9olk5yPSNGecE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O25538 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-7585008|intact:MINT-160800|ensemblbacteria:AAD07919 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25538_helpy(display_long)|uniprotkb:HP_0868(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323437|imex:IM-22256-375 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) mint:O25538|refseq:WP_001154698.1|refseq:NP_207662.1|ensemblbacteria:AAD07919(transcript)|ensemblbacteria:HP_0868(gene)|dip:DIP-3554N|uniprotkb:O25538(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:M4igvNFEg0gj/fsP6z1GfvXnaqk85962 intact-crc:6CF4AED4DE9B7540|rigid:K7Q22+H1jPglapOg0w2oOkXFW2g false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:O25538 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7585008|intact:MINT-160800|ensemblbacteria:AAD07919 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25538_helpy(display_long)|uniprotkb:HP_0868(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323455|imex:IM-22256-376 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:O25538|refseq:WP_001154698.1|refseq:NP_207662.1|ensemblbacteria:AAD07919(transcript)|ensemblbacteria:HP_0868(gene)|dip:DIP-3554N|uniprotkb:O25538(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:M4igvNFEg0gj/fsP6z1GfvXnaqk85962 intact-crc:CFD498F4B05BAA60|rigid:2Zi/A3GTzZ/ypRwgl7wUU/k2nM4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25538 uniprotkb:Q9ZN16 intact:EBI-7585008|intact:MINT-160800|ensemblbacteria:AAD07919 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:o25538_helpy(display_long)|uniprotkb:HP_0868(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323473|imex:IM-22256-377 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25538|refseq:WP_001154698.1|refseq:NP_207662.1|ensemblbacteria:AAD07919(transcript)|ensemblbacteria:HP_0868(gene)|dip:DIP-3554N|uniprotkb:O25538(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M4igvNFEg0gj/fsP6z1GfvXnaqk85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:601063B5DEEA5B74|rigid:D2vezg45gLjyqw25/PvR7rt2YAc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25404 uniprotkb:O25544 intact:EBI-7513643|intact:MINT-161582|ensemblbacteria:AAD07749 intact:EBI-9261745|ensemblbacteria:AAD07925 psi-mi:o25404_helpy(display_long)|uniprotkb:HP_0697(locus name) psi-mi:ruvc_helpy(display_long)|uniprotkb:ruvC(gene name)|psi-mi:ruvC(display_short)|uniprotkb:Holliday junction nuclease RuvC(gene name synonym)|uniprotkb:Holliday junction resolvase RuvC(gene name synonym)|uniprotkb:HP_0877(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323491|imex:IM-22256-378 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000245373.1|mint:O25404|refseq:NP_207491.1|ensemblbacteria:AAD07749(transcript)|ensemblbacteria:HP_0697(gene)|interpro:IPR016750(Acetone carboxylase, gamma subunit)|dip:DIP-3080N|uniprotkb:O25404(identity) refseq:WP_001221153.1|interpro:IPR002176(Crossover junction endodeoxyribonuclease RuvC)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR020563|refseq:NP_207671.1|interpro:IPR036397|ensemblbacteria:AAD07925(transcript)|ensemblbacteria:HP_0877(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008821"(crossover junction endodeoxyribonuclease activity)|uniprotkb:O25544(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Nz0lqIBw5jbojgJfu5k2Gwt+P0E85962 rogid:OIge7ikZ0hjuU04ADq18nNHW2NM85962 intact-crc:E8146B859080DA14|rigid:F8r5DHgOBRqO3DRkEoAGW9XozuQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25544 uniprotkb:O25544 intact:EBI-9261745|ensemblbacteria:AAD07925 intact:EBI-9261745|ensemblbacteria:AAD07925 psi-mi:ruvc_helpy(display_long)|uniprotkb:ruvC(gene name)|psi-mi:ruvC(display_short)|uniprotkb:Holliday junction nuclease RuvC(gene name synonym)|uniprotkb:Holliday junction resolvase RuvC(gene name synonym)|uniprotkb:HP_0877(locus name) psi-mi:ruvc_helpy(display_long)|uniprotkb:ruvC(gene name)|psi-mi:ruvC(display_short)|uniprotkb:Holliday junction nuclease RuvC(gene name synonym)|uniprotkb:Holliday junction resolvase RuvC(gene name synonym)|uniprotkb:HP_0877(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323509|imex:IM-22256-379 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001221153.1|interpro:IPR002176(Crossover junction endodeoxyribonuclease RuvC)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR020563|refseq:NP_207671.1|interpro:IPR036397|ensemblbacteria:AAD07925(transcript)|ensemblbacteria:HP_0877(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008821"(crossover junction endodeoxyribonuclease activity)|uniprotkb:O25544(identity) refseq:WP_001221153.1|interpro:IPR002176(Crossover junction endodeoxyribonuclease RuvC)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR020563|refseq:NP_207671.1|interpro:IPR036397|ensemblbacteria:AAD07925(transcript)|ensemblbacteria:HP_0877(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008821"(crossover junction endodeoxyribonuclease activity)|uniprotkb:O25544(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OIge7ikZ0hjuU04ADq18nNHW2NM85962 rogid:OIge7ikZ0hjuU04ADq18nNHW2NM85962 intact-crc:11B9AE911B864AD3|rigid:dRVfPIDJvl3kLSdbSde6Gzl9gBU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25546 uniprotkb:O25265 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323527|imex:IM-22256-380 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:AB42CECA82DB0D5A|rigid:aphLGsopHOpoo+e9340p4qkiuUk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25546 uniprotkb:O26081 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323563|imex:IM-22256-382 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 intact-crc:0E97DAB6D902E2BF|rigid:F09c0CvpFRjimBQGq8dGSPz8XB8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25707 uniprotkb:O25546 intact:EBI-7607688|intact:MINT-162871|ensemblbacteria:AAD08122 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:o25707_helpy(display_long)|uniprotkb:HP_1074(locus name) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323545|imex:IM-22256-381 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862769.1|mint:O25707|refseq:NP_207865.1|ensemblbacteria:AAD08122(transcript)|ensemblbacteria:HP_1074(gene)|dip:DIP-3641N|uniprotkb:O25707(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:76b3TtdjvRQbevyc2nRzlXtx25Q85962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:DBC86193E7A57F70|rigid:wpjDoYjf/240aZxnkq9/VcVnQtM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25546 uniprotkb:O34461 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323581|imex:IM-22256-383 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:CC4BCBEBABBE56D1|rigid:1m81j3OwEDuHaznGWpH1arMFD0w false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34754 uniprotkb:O25546 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323599|imex:IM-22256-384 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:F2A7652347023CFC|rigid:4eefrTs4rF4IXmihTWVbuIk288I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94846 uniprotkb:O25546 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323617|imex:IM-22256-385 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:94281BFE2B5CAB54|rigid:Fx8VPhQfvfI7r163LeteQ+bUU54 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25546 uniprotkb:Q9ZN16 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323635|imex:IM-22256-386 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:259FD6AD709F43DA|rigid:digNYZpt0vxmVDO4OT7AHF7Qv9U false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25547 uniprotkb:O25488 intact:EBI-9266312|ensemblbacteria:AAD07928 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:o25547_helpy(display_long)|uniprotkb:HP_0880(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323653|imex:IM-22256-387 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000857970.1|refseq:NP_207674.1|ensemblbacteria:AAD07928(transcript)|ensemblbacteria:HP_0880(gene)|uniprotkb:O25547(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:BvzaqljuIX2bUJbTqldU99NHJWU85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:1E8F44E7F10C1C07|rigid:fgqlAUdS2JbBiZbRDAqnenik4v0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25939 uniprotkb:O25549 intact:EBI-9266334|ensemblbacteria:AAD08437 intact:EBI-9266327|ensemblbacteria:AAD07932 psi-mi:o25939_helpy(display_long)|uniprotkb:HP_1389(locus name) psi-mi:ruva_helpy(display_long)|uniprotkb:ruvA(gene name)|psi-mi:ruvA(display_short)|uniprotkb:HP_0883(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323671|imex:IM-22256-388 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_208180.1|ensemblbacteria:AAD08437(transcript)|ensemblbacteria:HP_1389(gene)|uniprotkb:O25939(identity) refseq:WP_000635172.1|interpro:IPR000085(Bacterial DNA recombination protein RuvA)|interpro:IPR003583(Helix-hairpin-helix DNA-binding, class 1)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR011114(DNA helicase, Holliday junction RuvA type, C-terminal domain III)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013849(DNA helicase, Holliday junction RuvA type, domain I, bacterial)|refseq:NP_207676.1|interpro:IPR036267|ensemblbacteria:AAD07932(transcript)|ensemblbacteria:HP_0883(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0009378"(four-way junction helicase activity)|go:"GO:0009379"(Holliday junction helicase complex)|go:"GO:0009432"(SOS response)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|uniprotkb:O25549(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:8KrGq0QO0ahvNyyYA1dfWFdO/+I85962 rogid:0czc15sqOrri7LiNqxQEiMxcaAk85962 intact-crc:BA4DE4C830EDA004|rigid:l3zrEWW1xOBafNN3gY7TXy171sw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O25552 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-9266352|ensemblbacteria:AAD07941 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25552_helpy(display_long)|uniprotkb:HP_0892(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323689|imex:IM-22256-389 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) rcsb pdb:4NRN|refseq:WP_000955518.1|interpro:IPR004386(Conserved hypothetical protein CHP00053)|interpro:IPR007712(Plasmid stabilization system)|rcsb pdb:2OTR|refseq:NP_207685.1|interpro:IPR035093|ensemblbacteria:AAD07941(transcript)|ensemblbacteria:HP_0892(gene)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0006415"(translational termination)|go:"GO:0046872"(metal ion binding)|uniprotkb:O25552(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:ac9U9QTvnxKXvMP7oBQPNpMKN7c85962 intact-crc:E72C32B5E7771479|rigid:omPp6TzVKfHddTn5JdZlKHLDtcc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O06914 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323707|imex:IM-22256-390 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:9D360A14BDF18ABE|rigid:Uw+U16YvyQ21gmjZbCWFIBsYIkY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O24873 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-7493488|intact:MINT-163255|ensemblbacteria:AAD07107 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o24873_helpy(display_long)|uniprotkb:HP_0030(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323725|imex:IM-22256-391 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) mint:O24873|refseq:NP_206832.1|refseq:WP_000926158.1|ensemblbacteria:AAD07107(transcript)|ensemblbacteria:HP_0030(gene)|dip:DIP-3499N|uniprotkb:O24873(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:/WA2RxKnmOtAZF3txrMosHKaCn085962 intact-crc:3CC01E826A4AE708|rigid:C/WOhC0IiQEOixlG47ZgpKTfvx0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O25553 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323743|imex:IM-22256-392 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 intact-crc:52030ED6FB08F329|rigid:JyNt1Unjl+02fKqpZKiFlfhdXYU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O25552 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-9266352|ensemblbacteria:AAD07941 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25552_helpy(display_long)|uniprotkb:HP_0892(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323761|imex:IM-22256-393 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) rcsb pdb:4NRN|refseq:WP_000955518.1|interpro:IPR004386(Conserved hypothetical protein CHP00053)|interpro:IPR007712(Plasmid stabilization system)|rcsb pdb:2OTR|refseq:NP_207685.1|interpro:IPR035093|ensemblbacteria:AAD07941(transcript)|ensemblbacteria:HP_0892(gene)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0006415"(translational termination)|go:"GO:0046872"(metal ion binding)|uniprotkb:O25552(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:ac9U9QTvnxKXvMP7oBQPNpMKN7c85962 intact-crc:D95D708815E61DC7|rigid:omPp6TzVKfHddTn5JdZlKHLDtcc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O25553 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323779|imex:IM-22256-394 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 intact-crc:8908A17B7134DAEF|rigid:ExXme2OS70J62iLusB43bHUMzRM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:O25553 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323797|imex:IM-22256-395 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 intact-crc:A74ED90D118551AF|rigid:K/migqaF/1Uw1QQQIOQAVXS9Uc4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25561 uniprotkb:Q9ZKW4 intact:EBI-9266457|ensemblbacteria:AAD07952 intact:EBI-9261600|ensemblbacteria:AAD06393 psi-mi:o25561_helpy(display_long)|uniprotkb:HP_0901(locus name) psi-mi:q9zkw4_helpj(display_long)|uniprotkb:jhp_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323815|imex:IM-22256-396 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000973857.1|refseq:NP_207694.1|ensemblbacteria:AAD07952(transcript)|ensemblbacteria:HP_0901(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25561(identity) interpro:IPR002495(Glycosyl transferase, family 8)|interpro:IPR029044|ensemblbacteria:AAD06393(transcript)|ensemblbacteria:jhp_0820(gene)|go:"GO:0016757"(glycosyltransferase activity)|uniprotkb:Q9ZKW4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Zahcg9JPxlvvM5nGGoF/nfGlaKM85962 rogid:zzpEOeYpHTao8r++Ew1T+LCI5jA85963 intact-crc:5D67281831604890|rigid:4/ByoWN1ahupB7owe4wOfTmPdb4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25581 uniprotkb:O25581 intact:EBI-7675108|ensemblbacteria:AAD07977|intact:MINT-177793 intact:EBI-7675108|ensemblbacteria:AAD07977|intact:MINT-177793 psi-mi:y924_helpy(display_long)|uniprotkb:HP_0924(locus name) psi-mi:y924_helpy(display_long)|uniprotkb:HP_0924(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323851|imex:IM-22256-398 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07977(transcript)|ensemblbacteria:HP_0924(gene)|go:"GO:0006725"(cellular aromatic compound metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR004370(4-oxalocrotonate tautomerase)|interpro:IPR014347(Tautomerase)|interpro:IPR018191|rcsb pdb:2ORM|rcsb pdb:3M21|mint:O25581|refseq:NP_207716.1|refseq:WP_001115881.1|dip:DIP-3525N|uniprotkb:O25581(identity) ensemblbacteria:AAD07977(transcript)|ensemblbacteria:HP_0924(gene)|go:"GO:0006725"(cellular aromatic compound metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR004370(4-oxalocrotonate tautomerase)|interpro:IPR014347(Tautomerase)|interpro:IPR018191|rcsb pdb:2ORM|rcsb pdb:3M21|mint:O25581|refseq:NP_207716.1|refseq:WP_001115881.1|dip:DIP-3525N|uniprotkb:O25581(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uTfgVa1jx934RIxFBjUfit8hmqU85962 rogid:uTfgVa1jx934RIxFBjUfit8hmqU85962 intact-crc:FCEE225353A9AA9C|rigid:Nt+zqA/jfgyxzMSQjv6ljTiMGhM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25578 uniprotkb:O24991 intact:EBI-7676518|ensemblbacteria:AAD07964|intact:MINT-186577 intact:EBI-7525732|intact:MINT-165883|ensemblbacteria:AAD07263 psi-mi:y920_helpy(display_long)|uniprotkb:HP_0920(locus name) psi-mi:lpxd_helpy(display_long)|uniprotkb:HP_0196(locus name)|uniprotkb:lpxD(gene name)|psi-mi:lpxD(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323833|imex:IM-22256-397 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0016021"(integral component of membrane)|interpro:IPR006214(Protein of unknown function UPF0005)|go:"GO:0005886"(plasma membrane)|ensemblbacteria:AAD07964(transcript)|ensemblbacteria:HP_0920(gene)|mint:O25578|refseq:NP_207712.1|refseq:WP_001240277.1|dip:DIP-3284N|uniprotkb:O25578(identity) mint:O24991|refseq:WP_000777041.1|refseq:NP_206995.1|ensemblbacteria:AAD07263(transcript)|ensemblbacteria:HP_0196(gene)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016410"(N-acyltransferase activity)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR007691(UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD)|interpro:IPR011004(Trimeric LpxA-like)|interpro:IPR020573|dip:DIP-3246N|uniprotkb:O24991(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:K/CHOyGc9wP7wbFrkFvLx1Zkijk85962 rogid:QasheDoo1gV2p/HLISvtoewJ1Fg85962 intact-crc:BE6561785B6BB503|rigid:FouUKS48oBdpaE4HudvYL4ewujA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25460 uniprotkb:O25594 intact:EBI-7582456|intact:MINT-161653|ensemblbacteria:AAD07814 intact:EBI-9266505|ensemblbacteria:AAD07985 psi-mi:o25460_helpy(display_long)|uniprotkb:HP_0765(locus name) psi-mi:o25594_helpy(display_long)|uniprotkb:HP_0940(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323869|imex:IM-22256-399 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25460|refseq:WP_000392451.1|refseq:NP_207558.1|ensemblbacteria:AAD07814(transcript)|ensemblbacteria:HP_0765(gene)|dip:DIP-3506N|uniprotkb:O25460(identity) refseq:WP_000756473.1|interpro:IPR001638(Bacterial extracellular solute-binding protein, family 3)|interpro:IPR018313|refseq:NP_207732.1|ensemblbacteria:AAD07985(transcript)|ensemblbacteria:HP_0940(gene)|uniprotkb:O25594(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4aH/jdIEo9z9zYgpM6/NZt12WSI85962 rogid:5WeHQLXdWujImGlxq1A2qwIvrGk85962 intact-crc:C586AF0C4B5733C2|rigid:1h+DFftH2VI8Rac0PWle/x4dpEU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25604 uniprotkb:O25283 intact:EBI-7493450|intact:MINT-163318|ensemblbacteria:AAD07995 intact:EBI-9260195|ensemblbacteria:AAD07624 psi-mi:o25604_helpy(display_long)|uniprotkb:accD(gene name)|psi-mi:accD(display_short)|uniprotkb:HP_0950(locus name) psi-mi:acca_helpy(display_long)|uniprotkb:accA(gene name)|psi-mi:accA(display_short)|uniprotkb:HP_0557(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323887|imex:IM-22256-400 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25604|refseq:NP_207742.1|refseq:WP_000505053.1|ensemblbacteria:AAD07995(transcript)|ensemblbacteria:HP_0950(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016743"(carboxyl- or carbamoyltransferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR029045|interpro:IPR034733|interpro:IPR041010|dip:DIP-3163N|uniprotkb:O25604(identity) refseq:WP_000312027.1|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|refseq:NP_207352.1|interpro:IPR029045|ensemblbacteria:AAD07624(transcript)|ensemblbacteria:HP_0557(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009317"(acetyl-CoA carboxylase complex)|go:"GO:0016743"(carboxyl- or carbamoyltransferase activity)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|uniprotkb:O25283(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GuFC+qkk90rBmLkeFOOzi9Ze73885962 rogid:dtK9OQ8rBpkfINTjAK9rsVkEh5s85962 intact-crc:3615AE1D1AB540C4|rigid:BWSfBkg6LBh6l0UqckR8ZDxRarg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25605 uniprotkb:O25419 intact:EBI-7540455|intact:MINT-162381|ensemblbacteria:AAD08006 intact:EBI-7508533|intact:MINT-183607|ensemblbacteria:AAD07767 psi-mi:o25605_helpy(display_long)|uniprotkb:HP_0951(locus name) psi-mi:o25419_helpy(display_long)|uniprotkb:dnaX(gene name)|psi-mi:dnaX(display_short)|uniprotkb:HP_0717(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323905|imex:IM-22256-401 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010875567.1|mint:O25605|refseq:NP_207743.1|ensemblbacteria:AAD08006(transcript)|ensemblbacteria:HP_0951(gene)|interpro:IPR022572|dip:DIP-3323N|uniprotkb:O25605(identity) mint:O25419|refseq:NP_207511.1|refseq:WP_001197484.1|ensemblbacteria:AAD07767(transcript)|ensemblbacteria:HP_0717(gene)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0009360"(DNA polymerase III complex)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR012763(DNA polymerase III, subunits gamma and tau)|interpro:IPR027417|dip:DIP-3354N|uniprotkb:O25419(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fb8SuUfOPbxOJY2LGnuqfKHmmPA85962 rogid:/Y8+23ovqgZESMfCIFGC0Qbv4FY85962 intact-crc:8CC4D8C413C4003A|rigid:Fj5pb0WPMBxwNZ1sFFR6MlvEGBs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25152 uniprotkb:O25606 intact:EBI-7496390|intact:MINT-160594|ensemblbacteria:AAD07456 intact:EBI-9260819|ensemblbacteria:AAD07996 psi-mi:chew_helpy(display_long)|uniprotkb:cheW(gene name)|psi-mi:cheW(display_short)|uniprotkb:HP_0391(locus name) psi-mi:o25606_helpy(display_long)|uniprotkb:HP_0952(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323923|imex:IM-22256-402 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25152|refseq:NP_207189.1|ensemblbacteria:AAD07456(transcript)|ensemblbacteria:HP_0391(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|interpro:IPR002545(CheW-like protein)|interpro:IPR036061|interpro:IPR039315|refseq:WP_000070768.1|dip:DIP-3415N|uniprotkb:O25152(identity) refseq:WP_000669256.1|interpro:IPR008136(CinA, C-terminal)|refseq:NP_207744.1|interpro:IPR036653|ensemblbacteria:AAD07996(transcript)|ensemblbacteria:HP_0952(gene)|uniprotkb:O25606(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O7EjQcJzkk6XzC/nFhA90P9kgjQ85962 rogid:s8fk+afTe93cG0B77Mk3AdeOLvk85962 intact-crc:D2986161939C71C8|rigid:2D6nP/v3HsLX3cLUXtxI5SkgNWs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25612 uniprotkb:O25998 intact:EBI-7600058|intact:MINT-162426|ensemblbacteria:AAD08008 intact:EBI-7601350|intact:MINT-172739|ensemblbacteria:AAD08504 psi-mi:o25612_helpy(display_long)|uniprotkb:HP_0958(locus name) psi-mi:o25998_helpy(display_long)|uniprotkb:HP_1462(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323941|imex:IM-22256-403 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25612|refseq:WP_001091835.1|refseq:NP_207750.1|ensemblbacteria:AAD08008(transcript)|ensemblbacteria:HP_0958(gene)|interpro:IPR003743(Protein of unknown function DUF164)|dip:DIP-3603N|uniprotkb:O25612(identity) mint:O25998|refseq:WP_001873459.1|refseq:NP_208253.1|ensemblbacteria:AAD08504(transcript)|ensemblbacteria:HP_1462(gene)|interpro:IPR005184(Protein of unknown function DUF306, Meta and HslJ)|interpro:IPR038670|dip:DIP-3605N|uniprotkb:O25998(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tWI0I/tYQqF2LtrYMytSDaeGEH085962 rogid:vK+Q4OfYKb4A7hIchwzYE/DJkvI85962 intact-crc:72DCC0EFF34AE230|rigid:tWFAN0bzwq/wCHohd1MQX7wySro false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25612 uniprotkb:Q9ZKK8 intact:EBI-7600058|intact:MINT-162426|ensemblbacteria:AAD08008 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25612_helpy(display_long)|uniprotkb:HP_0958(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323959|imex:IM-22256-404 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25612|refseq:WP_001091835.1|refseq:NP_207750.1|ensemblbacteria:AAD08008(transcript)|ensemblbacteria:HP_0958(gene)|interpro:IPR003743(Protein of unknown function DUF164)|dip:DIP-3603N|uniprotkb:O25612(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tWI0I/tYQqF2LtrYMytSDaeGEH085962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:AEAA26EFF00CD9CA|rigid:xHKyGRhPZFDm2uZ2vubSh5j0nfo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25612 uniprotkb:Q9ZMH3 intact:EBI-7600058|intact:MINT-162426|ensemblbacteria:AAD08008 intact:EBI-9265592|ensemblbacteria:AAD05823 psi-mi:o25612_helpy(display_long)|uniprotkb:HP_0958(locus name) psi-mi:q9zmh3_helpj(display_long)|uniprotkb:jhp_0247(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323977|imex:IM-22256-405 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25612|refseq:WP_001091835.1|refseq:NP_207750.1|ensemblbacteria:AAD08008(transcript)|ensemblbacteria:HP_0958(gene)|interpro:IPR003743(Protein of unknown function DUF164)|dip:DIP-3603N|uniprotkb:O25612(identity) refseq:WP_010882505.1|interpro:IPR041551|ensemblbacteria:AAD05823(transcript)|ensemblbacteria:jhp_0247(gene)|uniprotkb:Q9ZMH3(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tWI0I/tYQqF2LtrYMytSDaeGEH085962 rogid:bBvE/oCHqYoN/0oAcM3TD1stXro85963 intact-crc:8E5E84F42B930F50|rigid:RTfpk7+rrd5rt86hoZ5dTQ3FWkc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25612 uniprotkb:Q9ZN32 intact:EBI-7600058|intact:MINT-162426|ensemblbacteria:AAD08008 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25612_helpy(display_long)|uniprotkb:HP_0958(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9323995|imex:IM-22256-406 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25612|refseq:WP_001091835.1|refseq:NP_207750.1|ensemblbacteria:AAD08008(transcript)|ensemblbacteria:HP_0958(gene)|interpro:IPR003743(Protein of unknown function DUF164)|dip:DIP-3603N|uniprotkb:O25612(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tWI0I/tYQqF2LtrYMytSDaeGEH085962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:CB4D499F92328CB8|rigid:Sdf+IW6ob0bvyt26QvdVpiL3B1w false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25775 uniprotkb:O25614 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 intact:EBI-7548621|intact:MINT-175509|ensemblbacteria:AAD08003 psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:gpda_helpy(display_long)|uniprotkb:HP_0961(locus name)|uniprotkb:gpsA(gene name)|psi-mi:gpsA(display_short)|uniprotkb:"NAD(P)H-dependent glycerol-3-phosphate dehydrogenase"(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324013|imex:IM-22256-407 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) refseq:WP_000401714.1|mint:O25614|refseq:NP_207753.1|ensemblbacteria:AAD08003(transcript)|ensemblbacteria:HP_0961(gene)|go:"GO:0004367"(glycerol-3-phosphate dehydrogenase [NAD+] activity)|go:"GO:0005829"(cytosol)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0006650"(glycerophospholipid metabolic process)|go:"GO:0008654"(phospholipid biosynthetic process)|go:"GO:0009331"(glycerol-3-phosphate dehydrogenase complex)|go:"GO:0046167"(glycerol-3-phosphate biosynthetic process)|go:"GO:0046168"(glycerol-3-phosphate catabolic process)|go:"GO:0047952"("glycerol-3-phosphate dehydrogenase [NAD(P)+] activity")|go:"GO:0051287"(NAD binding)|go:"GO:0106257"(glycerol-3-phosphate dehydrogenase [NADP+] activity)|interpro:IPR006109(NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal)|interpro:IPR006168(NAD-dependent glycerol-3-phosphate dehydrogenase)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR011128(NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal)|interpro:IPR013328(Dehydrogenase, multihelical)|interpro:IPR036291|dip:DIP-3377N|uniprotkb:O25614(identity) psi-mi:"MI:0469"(intact) function:May have metalloprotease activity|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 rogid:bmeNB6vj1JyfJNcH04ua3qvohfQ85962 intact-crc:16A1DA07DBDD4AC4|rigid:1NAwoU7+cCDYNlunbP01c2m86Qk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25614 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-7548621|intact:MINT-175509|ensemblbacteria:AAD08003 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:gpda_helpy(display_long)|uniprotkb:HP_0961(locus name)|uniprotkb:gpsA(gene name)|psi-mi:gpsA(display_short)|uniprotkb:"NAD(P)H-dependent glycerol-3-phosphate dehydrogenase"(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324031|imex:IM-22256-408 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000401714.1|mint:O25614|refseq:NP_207753.1|ensemblbacteria:AAD08003(transcript)|ensemblbacteria:HP_0961(gene)|go:"GO:0004367"(glycerol-3-phosphate dehydrogenase [NAD+] activity)|go:"GO:0005829"(cytosol)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0006650"(glycerophospholipid metabolic process)|go:"GO:0008654"(phospholipid biosynthetic process)|go:"GO:0009331"(glycerol-3-phosphate dehydrogenase complex)|go:"GO:0046167"(glycerol-3-phosphate biosynthetic process)|go:"GO:0046168"(glycerol-3-phosphate catabolic process)|go:"GO:0047952"("glycerol-3-phosphate dehydrogenase [NAD(P)+] activity")|go:"GO:0051287"(NAD binding)|go:"GO:0106257"(glycerol-3-phosphate dehydrogenase [NADP+] activity)|interpro:IPR006109(NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal)|interpro:IPR006168(NAD-dependent glycerol-3-phosphate dehydrogenase)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR011128(NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal)|interpro:IPR013328(Dehydrogenase, multihelical)|interpro:IPR036291|dip:DIP-3377N|uniprotkb:O25614(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:bmeNB6vj1JyfJNcH04ua3qvohfQ85962 intact-crc:C5B88B2CB43901C1|rigid:3E1hrYZF6iwnQA5p13GrI7a95aw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25614 uniprotkb:P94845 intact:EBI-7548621|intact:MINT-175509|ensemblbacteria:AAD08003 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 psi-mi:gpda_helpy(display_long)|uniprotkb:HP_0961(locus name)|uniprotkb:gpsA(gene name)|psi-mi:gpsA(display_short)|uniprotkb:"NAD(P)H-dependent glycerol-3-phosphate dehydrogenase"(gene name synonym) psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324049|imex:IM-22256-409 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000401714.1|mint:O25614|refseq:NP_207753.1|ensemblbacteria:AAD08003(transcript)|ensemblbacteria:HP_0961(gene)|go:"GO:0004367"(glycerol-3-phosphate dehydrogenase [NAD+] activity)|go:"GO:0005829"(cytosol)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0006072"(glycerol-3-phosphate metabolic process)|go:"GO:0006650"(glycerophospholipid metabolic process)|go:"GO:0008654"(phospholipid biosynthetic process)|go:"GO:0009331"(glycerol-3-phosphate dehydrogenase complex)|go:"GO:0046167"(glycerol-3-phosphate biosynthetic process)|go:"GO:0046168"(glycerol-3-phosphate catabolic process)|go:"GO:0047952"("glycerol-3-phosphate dehydrogenase [NAD(P)+] activity")|go:"GO:0051287"(NAD binding)|go:"GO:0106257"(glycerol-3-phosphate dehydrogenase [NADP+] activity)|interpro:IPR006109(NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal)|interpro:IPR006168(NAD-dependent glycerol-3-phosphate dehydrogenase)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR011128(NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal)|interpro:IPR013328(Dehydrogenase, multihelical)|interpro:IPR036291|dip:DIP-3377N|uniprotkb:O25614(identity) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bmeNB6vj1JyfJNcH04ua3qvohfQ85962 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 intact-crc:99F87D77C96856C4|rigid:A5ItH0edUh2tHMU3C7qzTpeOj0U false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25664 uniprotkb:O25620 intact:EBI-9261767|ensemblbacteria:AAD08064 intact:EBI-9266673|ensemblbacteria:AAD08011 psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:vad2_helpy(display_long)|uniprotkb:Virulence-associated protein D homolog(gene name synonym)|uniprotkb:HP_0967(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324067|imex:IM-22256-410 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) refseq:WP_000271456.1|interpro:IPR016368(Virulence-associated protein D)|interpro:IPR019199|refseq:NP_207759.1|ensemblbacteria:AAD08011(transcript)|ensemblbacteria:HP_0967(gene)|go:"GO:0004518"(nuclease activity)|uniprotkb:O25620(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 rogid:YJHiTI3hulsAfeq8tD3iLZ6Kd2o85962 intact-crc:714DFD9D21367622|rigid:DhPawWBEREOuyW07hDlIZkt9/ls false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56120 uniprotkb:O25620 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9266673|ensemblbacteria:AAD08011 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:vad2_helpy(display_long)|uniprotkb:Virulence-associated protein D homolog(gene name synonym)|uniprotkb:HP_0967(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324085|imex:IM-22256-411 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) refseq:WP_000271456.1|interpro:IPR016368(Virulence-associated protein D)|interpro:IPR019199|refseq:NP_207759.1|ensemblbacteria:AAD08011(transcript)|ensemblbacteria:HP_0967(gene)|go:"GO:0004518"(nuclease activity)|uniprotkb:O25620(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:YJHiTI3hulsAfeq8tD3iLZ6Kd2o85962 intact-crc:FA06A1F157551AD9|rigid:Ios+d9TsngA6MZRT09dZk+YinJk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25626 uniprotkb:O24921 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-9260837|ensemblbacteria:AAD07170 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:o24921_helpy(display_long)|uniprotkb:HP_0095(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324103|imex:IM-22256-412 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) refseq:WP_001125803.1|refseq:NP_206895.1|ensemblbacteria:AAD07170(transcript)|ensemblbacteria:HP_0095(gene)|uniprotkb:O24921(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:u3bQBXJwbeu7kteqTqCQ4QqbviM85962 intact-crc:54534392A4275F77|rigid:E4JLg+aKxyXOSqoPzDXSOUfW3Ec false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25626 uniprotkb:O24926 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-7494854|intact:MINT-159805|ensemblbacteria:AAD07168 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:queh_helpy(display_long)|uniprotkb:Queuosine biosynthesis protein QueH(gene name synonym)|uniprotkb:HP_0100(locus name)|uniprotkb:queH(gene name)|psi-mi:queH(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324121|imex:IM-22256-413 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) mint:O24926|refseq:NP_206900.1|refseq:WP_000905219.1|ensemblbacteria:AAD07168(transcript)|ensemblbacteria:HP_0100(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0052693"(epoxyqueuosine reductase activity)|interpro:IPR003828(Protein of unknown function DUF208)|dip:DIP-3170N|uniprotkb:O24926(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:Wq9kyscW1vuBxHL6xNZc6vRBdys85962 intact-crc:EEA088FB47EC3694|rigid:DaPz377uwV2EDW84HSK71jc9FEg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25234 uniprotkb:O25626 intact:EBI-7504642|intact:MINT-185392|ensemblbacteria:AAD07568 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 psi-mi:o25234_helpy(display_long)|uniprotkb:Flagellar sheath adhesin(gene name synonym)|uniprotkb:N-acetylneuraminyllactose-binding fibrillar hemagglutinin receptor-binding subunit(gene name synonym)|uniprotkb:HP_0492(locus name) psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324139|imex:IM-22256-414 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25234|refseq:WP_000442290.1|refseq:NP_207289.1|ensemblbacteria:AAD07568(transcript)|ensemblbacteria:HP_0492(gene)|go:"GO:0009279"(cell outer membrane)|interpro:IPR007876(Neuraminyllactose-binding haemagglutinin precursor)|interpro:IPR038531|rcsb pdb:2I9I|dip:DIP-3500N|uniprotkb:O25234(identity) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nf1561kbaPf8GiTJe9Y29ij+MSo85962 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 intact-crc:A8513CB359992E3A|rigid:sj6NQdN7hB/7TfRYrZvWG4HtR+4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25626 uniprotkb:O25296 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-9264240|ensemblbacteria:AAD07640 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:apt_helpy(display_long)|uniprotkb:apt(gene name)|psi-mi:apt(display_short)|uniprotkb:HP_0572(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324157|imex:IM-22256-415 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) refseq:WP_001006135.1|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR005764(Adenine phosphoribosyl transferase)|refseq:NP_207367.1|interpro:IPR029057|ensemblbacteria:AAD07640(transcript)|ensemblbacteria:HP_0572(gene)|go:"GO:0002055"(adenine binding)|go:"GO:0003999"(adenine phosphoribosyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006166"(purine ribonucleoside salvage)|go:"GO:0006168"(adenine salvage)|go:"GO:0016208"(AMP binding)|go:"GO:0044209"(AMP salvage)|uniprotkb:O25296(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:/dZ4MOTpTw+nT9QG8pJr3NC1h4E85962 intact-crc:BFF215B79C802AFF|rigid:T7bq8Jm3MuuxSSXUuAmSiw7OmiA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25626 uniprotkb:O25423 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324175|imex:IM-22256-416 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:3E38A54CFC63719F|rigid:ECLOEfvGk2Q+6p7KGgPcwOKVmX0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25469 uniprotkb:O25626 intact:EBI-7501223|intact:MINT-188145|ensemblbacteria:AAD07833 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 psi-mi:o25469_helpy(display_long)|uniprotkb:HP_0780(locus name) psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324193|imex:IM-22256-417 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25469|refseq:WP_010875544.1|refseq:NP_207573.1|ensemblbacteria:AAD07833(transcript)|ensemblbacteria:HP_0780(gene)|dip:DIP-3759N|uniprotkb:O25469(identity) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:T79IvYyIaKGuB1dKySph4yiJ0Ek85962 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 intact-crc:887C75AA58A3973B|rigid:P6tgDSmhimsJwJwch85uiI4i6MM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O25626 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324211|imex:IM-22256-418 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 intact-crc:02B498A1D64E2CB5|rigid:UcSKJN/W+HHKEThZgZObTVqAW1A false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25626 uniprotkb:O25592 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-7598036|intact:MINT-162023|ensemblbacteria:AAD07991 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:o25592_helpy(display_long)|uniprotkb:HP_0938(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324247|imex:IM-22256-420 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) mint:O25592|refseq:WP_001862937.1|refseq:NP_207730.1|ensemblbacteria:AAD07991(transcript)|ensemblbacteria:HP_0938(gene)|interpro:IPR004919(Protein of unknown function DUF262)|dip:DIP-3591N|uniprotkb:O25592(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:ge8BhFYAGSLIpx+GRPzWkRXRKgQ85962 intact-crc:E1DB707E0EE6F36D|rigid:bRESvigMn4m36THsnRxWS/Yroec false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25567 uniprotkb:O25626 intact:EBI-7594166|intact:MINT-164078|ensemblbacteria:AAD07959 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 psi-mi:o25567_helpy(display_long)|uniprotkb:HP_0909(locus name) psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324229|imex:IM-22256-419 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000613266.1|mint:O25567|refseq:NP_207701.1|ensemblbacteria:AAD07959(transcript)|ensemblbacteria:HP_0909(gene)|dip:DIP-3581N|uniprotkb:O25567(identity) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ENgoOYqZmKL3kxMn3EAQ0bb/kIU85962 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 intact-crc:F17FFD5FDCFBD2BF|rigid:Zf1i0xtMMMwf2IdxQ3elv8Uqe8w false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25629 uniprotkb:O25265 intact:EBI-7505515|intact:MINT-163208|ensemblbacteria:AAD08024 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:ftsa_helpy(display_long)|uniprotkb:ftsA(gene name)|psi-mi:ftsA(display_short)|uniprotkb:HP_0978(locus name) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324265|imex:IM-22256-421 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25629|refseq:WP_000400290.1|refseq:NP_207769.1|ensemblbacteria:AAD08024(transcript)|ensemblbacteria:HP_0978(gene)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051301"(cell division)|interpro:IPR003494(Cell division protein FtsA)|interpro:IPR020823|interpro:IPR043129|dip:DIP-3124N|uniprotkb:O25629(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein may be involved in anomalous filament growth. May be a component of the septum - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jRkQVJaEFRsCXTz0mUmRP13iyes85962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:07CD6CC83D8460E4|rigid:MqBoKBR7sLVS4m8a8rUxIz4kkCc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25767 uniprotkb:O25631 intact:EBI-9266862|ensemblbacteria:AAD08193 intact:EBI-9266859|ensemblbacteria:AAD08027 psi-mi:rimm_helpy(display_long)|uniprotkb:rimM(gene name)|psi-mi:rimM(display_short)|uniprotkb:HP_1149(locus name) psi-mi:o25631_helpy(display_long)|uniprotkb:HP_0981(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324283|imex:IM-22256-422 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000254337.1|interpro:IPR002676(RimM protein)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR011033(PRC-barrel-like)|interpro:IPR011961(16S rRNA processing protein RimM)|interpro:IPR027275|refseq:NP_207940.1|interpro:IPR036976|ensemblbacteria:AAD08193(transcript)|ensemblbacteria:HP_1149(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005840"(ribosome)|go:"GO:0006364"(rRNA processing)|go:"GO:0042274"(ribosomal small subunit biogenesis)|go:"GO:0043022"(ribosome binding)|uniprotkb:O25767(identity) interpro:IPR003753(Exonuclease VII, large subunit)|interpro:IPR020579|ensemblbacteria:AAD08027(transcript)|ensemblbacteria:HP_0981(gene)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|uniprotkb:O25631(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9xiE1imgBr+he7Fh0v2pKOttrSo85962 rogid:17e8XF2XhqFJT9w6rNKkSkN7k/s85962 intact-crc:82C88CE3CC223813|rigid:ri16QKbQkuJPWtlXMIrqtbNBRk4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:O25631 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9266859|ensemblbacteria:AAD08027 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o25631_helpy(display_long)|uniprotkb:HP_0981(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324313|imex:IM-22256-423 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) interpro:IPR003753(Exonuclease VII, large subunit)|interpro:IPR020579|ensemblbacteria:AAD08027(transcript)|ensemblbacteria:HP_0981(gene)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|uniprotkb:O25631(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:17e8XF2XhqFJT9w6rNKkSkN7k/s85962 intact-crc:03ED88E1A2396B73|rigid:ETl0z8tQ/pT3Rgez6A+RJQw6ZnU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25769 uniprotkb:O25633 intact:EBI-7500041|intact:MINT-169612|ensemblbacteria:AAD08203 intact:EBI-7495815|intact:MINT-174294|ensemblbacteria:AAD08029 psi-mi:fliw1_helpy(display_long)|uniprotkb:HP_1154(locus name)|uniprotkb:fliW1(gene name)|psi-mi:fliW1(display_short) psi-mi:o25633_helpy(display_long)|uniprotkb:HP_0983(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324331|imex:IM-22256-424 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25769|refseq:WP_001105854.1|refseq:NP_207945.1|ensemblbacteria:AAD08203(transcript)|ensemblbacteria:HP_1154(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|dip:DIP-3307N|uniprotkb:O25769(identity) mint:O25633|refseq:NP_207774.1|ensemblbacteria:AAD08029(transcript)|ensemblbacteria:HP_0983(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0055085"(transmembrane transport)|interpro:IPR006685(Mechanosensitive ion channel MscS)|interpro:IPR010920(Like-Sm ribonucleoprotein-related, core)|interpro:IPR011014(Mechanosensitive ion channel MscS, transmembrane-2)|interpro:IPR011066(Mechanosensitive ion channel MscS, C-terminal)|interpro:IPR023408|refseq:WP_000343415.1|dip:DIP-3212N|uniprotkb:O25633(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:akwR8LvQZuOb1rNt4vqG2NubfHU85962 rogid:6FILqK8HFSI/r55Ob6NphKLnd0U85962 intact-crc:BA0B3C69B3D11BF8|rigid:4iLtz8KspX2CI6fU+YhlXPmlhHE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25488 uniprotkb:O25640 intact:EBI-9263014|ensemblbacteria:AAD07855 intact:EBI-9266929|ensemblbacteria:AAD08037 psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:o25640_helpy(display_long)|uniprotkb:HP_0992(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324367|imex:IM-22256-426 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) ensemblbacteria:AAD08037(transcript)|ensemblbacteria:HP_0992(gene)|uniprotkb:O25640(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 rogid:UvcLcS8TflkrHlHBZ7x5T9Qxlo485962 intact-crc:72B83E2F8484BD4B|rigid:U+LdVftDcwXp7G/+SaxubiWf8Jw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25633 uniprotkb:O25938 intact:EBI-7495815|intact:MINT-174294|ensemblbacteria:AAD08029 intact:EBI-9266908|ensemblbacteria:AAD08430 psi-mi:o25633_helpy(display_long)|uniprotkb:HP_0983(locus name) psi-mi:o25938_helpy(display_long)|uniprotkb:HP_1388(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324349|imex:IM-22256-425 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25633|refseq:NP_207774.1|ensemblbacteria:AAD08029(transcript)|ensemblbacteria:HP_0983(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0055085"(transmembrane transport)|interpro:IPR006685(Mechanosensitive ion channel MscS)|interpro:IPR010920(Like-Sm ribonucleoprotein-related, core)|interpro:IPR011014(Mechanosensitive ion channel MscS, transmembrane-2)|interpro:IPR011066(Mechanosensitive ion channel MscS, C-terminal)|interpro:IPR023408|refseq:WP_000343415.1|dip:DIP-3212N|uniprotkb:O25633(identity) refseq:WP_001862625.1|refseq:NP_208179.1|ensemblbacteria:AAD08430(transcript)|ensemblbacteria:HP_1388(gene)|uniprotkb:O25938(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6FILqK8HFSI/r55Ob6NphKLnd0U85962 rogid:lD4BCbeqG3Vu7n2+k431kkKoWTU85962 intact-crc:1AB1476E56214A4C|rigid:alzsY2DB0FYzNzUmNQLv/FqWJeE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O25640 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9266929|ensemblbacteria:AAD08037 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o25640_helpy(display_long)|uniprotkb:HP_0992(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324385|imex:IM-22256-427 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) ensemblbacteria:AAD08037(transcript)|ensemblbacteria:HP_0992(gene)|uniprotkb:O25640(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:UvcLcS8TflkrHlHBZ7x5T9Qxlo485962 intact-crc:C3FB4AEC37407EF8|rigid:sx0kFvJkYwVII9+IYkYMa0HUQBk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25640 uniprotkb:O25676 intact:EBI-9266929|ensemblbacteria:AAD08037 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:o25640_helpy(display_long)|uniprotkb:HP_0992(locus name) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324403|imex:IM-22256-428 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08037(transcript)|ensemblbacteria:HP_0992(gene)|uniprotkb:O25640(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UvcLcS8TflkrHlHBZ7x5T9Qxlo485962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:F8A1AE82C3DCFF00|rigid:f+6psbAaIn1M5I9HR3gz7hudSJQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25644 uniprotkb:O25679 intact:EBI-7494357|intact:MINT-175438|ensemblbacteria:AAD08046 intact:EBI-7504443|intact:MINT-179903|ensemblbacteria:AAD08078 psi-mi:o25644_helpy(display_long)|uniprotkb:HP_0996(locus name) psi-mi:flhf_helpy(display_long)|uniprotkb:HP_1035(locus name)|uniprotkb:flhF(gene name)|psi-mi:flhF(display_short)|uniprotkb:Flagella-associated GTP-binding protein(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324439|imex:IM-22256-430 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25644|refseq:NP_207787.1|refseq:WP_010875578.1|ensemblbacteria:AAD08046(transcript)|ensemblbacteria:HP_0996(gene)|dip:DIP-3237N|uniprotkb:O25644(identity) mint:O25679|refseq:NP_207825.1|refseq:WP_000238399.1|ensemblbacteria:AAD08078(transcript)|ensemblbacteria:HP_1035(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005047"(signal recognition particle binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0006614"(SRP-dependent cotranslational protein targeting to membrane)|go:"GO:0016020"(membrane)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR000897(Signal recognition particle, SRP54 subunit, GTPase)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR020006|interpro:IPR027417|dip:DIP-3259N|uniprotkb:O25679(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jukREQtBXBcPiaibDlEkfEtW0ds85962 rogid:14+AfdHCUm8JtDyk14sYWINIKMU85962 intact-crc:8C740D419C4209E5|rigid:42NsTf33ptUwyogsjSQ60jRTcZ8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25644 uniprotkb:O25553 intact:EBI-7494357|intact:MINT-175438|ensemblbacteria:AAD08046 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 psi-mi:o25644_helpy(display_long)|uniprotkb:HP_0996(locus name) psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324421|imex:IM-22256-429 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25644|refseq:NP_207787.1|refseq:WP_010875578.1|ensemblbacteria:AAD08046(transcript)|ensemblbacteria:HP_0996(gene)|dip:DIP-3237N|uniprotkb:O25644(identity) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jukREQtBXBcPiaibDlEkfEtW0ds85962 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 intact-crc:958488C51878976F|rigid:dvKAz951+Ehpr7YT+Krzs91rkME false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:O25649 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9260700|ensemblbacteria:AAD08050 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324529|imex:IM-22256-435 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 intact-crc:D9D534CD85D9413B|rigid:aghy1KrYQRII4FtBcOEatdbKD3g false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25649 uniprotkb:O25938 intact:EBI-9260700|ensemblbacteria:AAD08050 intact:EBI-9266908|ensemblbacteria:AAD08430 psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:o25938_helpy(display_long)|uniprotkb:HP_1388(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324511|imex:IM-22256-434 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) refseq:WP_001862625.1|refseq:NP_208179.1|ensemblbacteria:AAD08430(transcript)|ensemblbacteria:HP_1388(gene)|uniprotkb:O25938(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 rogid:lD4BCbeqG3Vu7n2+k431kkKoWTU85962 intact-crc:57A52D4CA15B68BB|rigid:wHtFPJCm2VqJxuHm3XFU/2xtIK4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:O25649 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-9260700|ensemblbacteria:AAD08050 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324493|imex:IM-22256-433 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 intact-crc:684AB3E0B523BF24|rigid:4XWzKeR57F7uyCw57TV758Lani8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25423 uniprotkb:O25649 intact:EBI-9260274|ensemblbacteria:AAD07777 intact:EBI-9260700|ensemblbacteria:AAD08050 psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324475|imex:IM-22256-432 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 intact-crc:54C68E0D9F0EE20E|rigid:UzT47HuiWuUyoo4U5HLTKHnClVY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94845 uniprotkb:O25647 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-9267004|ensemblbacteria:AAD08048 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:o25647_helpy(display_long)|uniprotkb:HP_1001(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324457|imex:IM-22256-431 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) refseq:WP_000394638.1|refseq:NP_207792.1|ensemblbacteria:AAD08048(transcript)|ensemblbacteria:HP_1001(gene)|uniprotkb:O25647(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:clvyrYFIxRsXnW6ANkL8INohemM85962 intact-crc:966406688763498A|rigid:ozSJGMXQbmCIHgV6mX5hSI+EVaw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25674 uniprotkb:O25675 intact:EBI-7559878|intact:MINT-4065399|ensemblbacteria:AAD08074 intact:EBI-6409052|ensemblbacteria:AAD08075 psi-mi:o25674_helpy(display_long)|uniprotkb:HP_1030(locus name) psi-mi:o25675_helpy(display_long)|uniprotkb:HP_1031(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324637|imex:IM-22256-441 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|mint:O25674|refseq:WP_001150629.1|interpro:IPR036429|refseq:NP_207820.1|interpro:IPR028976|ensemblbacteria:AAD08074(transcript)|ensemblbacteria:HP_1030(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|rcsb pdb:5XRW|uniprotkb:O25674(identity) ensemblbacteria:AAD08075(transcript)|ensemblbacteria:HP_1031(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0050918"(positive chemotaxis)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|refseq:WP_000763575.1|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR001689(Flagellar motor switch protein FliM)|refseq:NP_207821.1|rcsb pdb:4FQ0|rcsb pdb:4GC8|interpro:IPR028976|interpro:IPR036429|rcsb pdb:5X0Z|uniprotkb:O25675(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wh43hksoYo8r/6ZiCbBBRMIq0ko85962 rogid:PoH/4f0GQPSggTR0iKLBxRl6GLU85962 intact-crc:122BC74E37469786|rigid:qlbElJiWUnBKiTcjE3foNBLVNDE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25674 uniprotkb:O25306 intact:EBI-7559878|intact:MINT-4065399|ensemblbacteria:AAD08074 intact:EBI-7724193|ensemblbacteria:AAD07636|intact:MINT-181297 psi-mi:o25674_helpy(display_long)|uniprotkb:HP_1030(locus name) psi-mi:o25306_helpy(display_long)|uniprotkb:HP_0584(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324619|imex:IM-22256-440 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|mint:O25674|refseq:WP_001150629.1|interpro:IPR036429|refseq:NP_207820.1|interpro:IPR028976|ensemblbacteria:AAD08074(transcript)|ensemblbacteria:HP_1030(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|rcsb pdb:5XRW|uniprotkb:O25674(identity) mint:O25306|ensemblbacteria:AAD07636(transcript)|ensemblbacteria:HP_0584(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0016020"(membrane)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|interpro:IPR036429|rcsb pdb:5XRW|refseq:WP_000004827.1|refseq:NP_207379.1|dip:DIP-3483N|uniprotkb:O25306(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wh43hksoYo8r/6ZiCbBBRMIq0ko85962 rogid:mFQXnvxmknautsuYvYOp6RAC9mg85962 intact-crc:E713018F9A2F890C|rigid:i2LVOdtNgz9jBpC+5t2UmICqy8A false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25669 uniprotkb:O25669 intact:EBI-6415953|ensemblbacteria:AAD08067 intact:EBI-6415953|ensemblbacteria:AAD08067 psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324601|imex:IM-22256-439 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 intact-crc:88ADD20D9269EB77|rigid:gBp3A0eHkbAX02pn0FEldLd87SI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25419 uniprotkb:O25669 intact:EBI-7508533|intact:MINT-183607|ensemblbacteria:AAD07767 intact:EBI-6415953|ensemblbacteria:AAD08067 psi-mi:o25419_helpy(display_long)|uniprotkb:dnaX(gene name)|psi-mi:dnaX(display_short)|uniprotkb:HP_0717(locus name) psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324583|imex:IM-22256-438 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25419|refseq:NP_207511.1|refseq:WP_001197484.1|ensemblbacteria:AAD07767(transcript)|ensemblbacteria:HP_0717(gene)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0009360"(DNA polymerase III complex)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR012763(DNA polymerase III, subunits gamma and tau)|interpro:IPR027417|dip:DIP-3354N|uniprotkb:O25419(identity) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/Y8+23ovqgZESMfCIFGC0Qbv4FY85962 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 intact-crc:FF792FB78E860527|rigid:k4FYaK3j/Rc4nDkIWVybvXz8I8I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94845 uniprotkb:O25666 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-9267085|ensemblbacteria:AAD08070 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:o25666_helpy(display_long)|uniprotkb:HP_1022(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324565|imex:IM-22256-437 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) refseq:WP_000556224.1|interpro:IPR002421(5'-3' exonuclease)|interpro:IPR008918(Helix-hairpin-helix motif, class 2)|interpro:IPR020046|refseq:NP_207812.1|interpro:IPR029060|interpro:IPR036279|ensemblbacteria:AAD08070(transcript)|ensemblbacteria:HP_1022(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003824"(catalytic activity)|uniprotkb:O25666(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:twnySVs04F5X07K8nA4MCAGjRuo85962 intact-crc:C5DE09218C0C0081|rigid:E9lDaLPMF5BCF0K/9F7pAIvhQ/0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O06914 uniprotkb:O25666 intact:EBI-9261354|ensemblbacteria:AAD07258 intact:EBI-9267085|ensemblbacteria:AAD08070 psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:o25666_helpy(display_long)|uniprotkb:HP_1022(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324547|imex:IM-22256-436 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) refseq:WP_000556224.1|interpro:IPR002421(5'-3' exonuclease)|interpro:IPR008918(Helix-hairpin-helix motif, class 2)|interpro:IPR020046|refseq:NP_207812.1|interpro:IPR029060|interpro:IPR036279|ensemblbacteria:AAD08070(transcript)|ensemblbacteria:HP_1022(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003824"(catalytic activity)|uniprotkb:O25666(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 rogid:twnySVs04F5X07K8nA4MCAGjRuo85962 intact-crc:A3D874DC514DE093|rigid:rddSJ6js9HklarDVXS5ItAGhabs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25679 uniprotkb:O24974 intact:EBI-7504443|intact:MINT-179903|ensemblbacteria:AAD08078 intact:EBI-7527947|intact:MINT-179928|ensemblbacteria:AAD07240 psi-mi:flhf_helpy(display_long)|uniprotkb:HP_1035(locus name)|uniprotkb:flhF(gene name)|psi-mi:flhF(display_short)|uniprotkb:Flagella-associated GTP-binding protein(gene name synonym) psi-mi:o24974_helpy(display_long)|uniprotkb:HP_0167(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324745|imex:IM-22256-447 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25679|refseq:NP_207825.1|refseq:WP_000238399.1|ensemblbacteria:AAD08078(transcript)|ensemblbacteria:HP_1035(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005047"(signal recognition particle binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0006614"(SRP-dependent cotranslational protein targeting to membrane)|go:"GO:0016020"(membrane)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR000897(Signal recognition particle, SRP54 subunit, GTPase)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR020006|interpro:IPR027417|dip:DIP-3259N|uniprotkb:O25679(identity) mint:O24974|refseq:WP_000918975.1|refseq:NP_206966.1|ensemblbacteria:AAD07240(transcript)|ensemblbacteria:HP_0167(gene)|dip:DIP-3258N|uniprotkb:O24974(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:14+AfdHCUm8JtDyk14sYWINIKMU85962 rogid:RYYaoYhZKafs1dMof2b0/Vk/qdc85962 intact-crc:091271D1D4870298|rigid:u4ozFGlvda7EtS8NWuA84qrQBoM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25679 uniprotkb:O25678 intact:EBI-7504443|intact:MINT-179903|ensemblbacteria:AAD08078 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 psi-mi:flhf_helpy(display_long)|uniprotkb:HP_1035(locus name)|uniprotkb:flhF(gene name)|psi-mi:flhF(display_short)|uniprotkb:Flagella-associated GTP-binding protein(gene name synonym) psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324727|imex:IM-22256-446 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25679|refseq:NP_207825.1|refseq:WP_000238399.1|ensemblbacteria:AAD08078(transcript)|ensemblbacteria:HP_1035(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005047"(signal recognition particle binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0006614"(SRP-dependent cotranslational protein targeting to membrane)|go:"GO:0016020"(membrane)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR000897(Signal recognition particle, SRP54 subunit, GTPase)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR020006|interpro:IPR027417|dip:DIP-3259N|uniprotkb:O25679(identity) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:14+AfdHCUm8JtDyk14sYWINIKMU85962 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 intact-crc:6E8FA6CB24E9835D|rigid:4rmKR1Ml6coUPbZQvP9Fel849sk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25676 uniprotkb:O25265 intact:EBI-527933|ensemblbacteria:AAD08076 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324709|imex:IM-22256-445 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:BE68D4556C17DCE3|rigid:IwtgSmeblA5WOcAUvMU35PLY1JQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25676 uniprotkb:O24943 intact:EBI-527933|ensemblbacteria:AAD08076 intact:EBI-9260876|ensemblbacteria:AAD07198 psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:o24943_helpy(display_long)|uniprotkb:HP_0129(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324691|imex:IM-22256-444 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) interpro:IPR038310|refseq:WP_000731991.1|interpro:IPR009488(Protein of unknown function DUF1104)|refseq:NP_206929.1|ensemblbacteria:AAD07198(transcript)|ensemblbacteria:HP_0129(gene)|uniprotkb:O24943(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 rogid:YH8hSCLRQPFmw/PXnvG+lvsz05Q85962 intact-crc:0B5205E378D73A47|rigid:0FAB1GfvXYlSrSSc5KA6464Ywvk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25679 uniprotkb:O25675 intact:EBI-7504443|intact:MINT-179903|ensemblbacteria:AAD08078 intact:EBI-6409052|ensemblbacteria:AAD08075 psi-mi:flhf_helpy(display_long)|uniprotkb:HP_1035(locus name)|uniprotkb:flhF(gene name)|psi-mi:flhF(display_short)|uniprotkb:Flagella-associated GTP-binding protein(gene name synonym) psi-mi:o25675_helpy(display_long)|uniprotkb:HP_1031(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324673|imex:IM-22256-443 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25679|refseq:NP_207825.1|refseq:WP_000238399.1|ensemblbacteria:AAD08078(transcript)|ensemblbacteria:HP_1035(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005047"(signal recognition particle binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0006614"(SRP-dependent cotranslational protein targeting to membrane)|go:"GO:0016020"(membrane)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR000897(Signal recognition particle, SRP54 subunit, GTPase)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR020006|interpro:IPR027417|dip:DIP-3259N|uniprotkb:O25679(identity) ensemblbacteria:AAD08075(transcript)|ensemblbacteria:HP_1031(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0050918"(positive chemotaxis)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|refseq:WP_000763575.1|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR001689(Flagellar motor switch protein FliM)|refseq:NP_207821.1|rcsb pdb:4FQ0|rcsb pdb:4GC8|interpro:IPR028976|interpro:IPR036429|rcsb pdb:5X0Z|uniprotkb:O25675(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:14+AfdHCUm8JtDyk14sYWINIKMU85962 rogid:PoH/4f0GQPSggTR0iKLBxRl6GLU85962 intact-crc:41794290ACDB891F|rigid:eujOdrJcKrbGFA99nUkO6uMDusM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25674 uniprotkb:O25675 intact:EBI-7559878|intact:MINT-4065399|ensemblbacteria:AAD08074 intact:EBI-6409052|ensemblbacteria:AAD08075 psi-mi:o25674_helpy(display_long)|uniprotkb:HP_1030(locus name) psi-mi:o25675_helpy(display_long)|uniprotkb:HP_1031(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324655|imex:IM-22256-442 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|mint:O25674|refseq:WP_001150629.1|interpro:IPR036429|refseq:NP_207820.1|interpro:IPR028976|ensemblbacteria:AAD08074(transcript)|ensemblbacteria:HP_1030(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|rcsb pdb:5XRW|uniprotkb:O25674(identity) ensemblbacteria:AAD08075(transcript)|ensemblbacteria:HP_1031(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0050918"(positive chemotaxis)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|refseq:WP_000763575.1|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR001689(Flagellar motor switch protein FliM)|refseq:NP_207821.1|rcsb pdb:4FQ0|rcsb pdb:4GC8|interpro:IPR028976|interpro:IPR036429|rcsb pdb:5X0Z|uniprotkb:O25675(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wh43hksoYo8r/6ZiCbBBRMIq0ko85962 rogid:PoH/4f0GQPSggTR0iKLBxRl6GLU85962 intact-crc:2C5A8573C5D79E38|rigid:qlbElJiWUnBKiTcjE3foNBLVNDE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24873 uniprotkb:O25684 intact:EBI-7493488|intact:MINT-163255|ensemblbacteria:AAD07107 intact:EBI-9267313|ensemblbacteria:AAD08088 psi-mi:o24873_helpy(display_long)|uniprotkb:HP_0030(locus name) psi-mi:o25684_helpy(display_long)|uniprotkb:HP_1043(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324817|imex:IM-22256-451 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24873|refseq:NP_206832.1|refseq:WP_000926158.1|ensemblbacteria:AAD07107(transcript)|ensemblbacteria:HP_0030(gene)|dip:DIP-3499N|uniprotkb:O24873(identity) refseq:WP_001264982.1|interpro:IPR039420|interpro:IPR036388|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|rcsb pdb:2PLN|refseq:NP_207833.1|ensemblbacteria:AAD08088(transcript)|ensemblbacteria:HP_1043(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|uniprotkb:O25684(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/WA2RxKnmOtAZF3txrMosHKaCn085962 rogid:yC68Rj5sMfcts8ZYcM3ryOKmo6U85962 intact-crc:335AAA713A6F1D6C|rigid:nmF99qb2RxBMYmSywsJcAUWB0tU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25679 uniprotkb:O25679 intact:EBI-7504443|intact:MINT-179903|ensemblbacteria:AAD08078 intact:EBI-7504443|intact:MINT-179903|ensemblbacteria:AAD08078 psi-mi:flhf_helpy(display_long)|uniprotkb:HP_1035(locus name)|uniprotkb:flhF(gene name)|psi-mi:flhF(display_short)|uniprotkb:Flagella-associated GTP-binding protein(gene name synonym) psi-mi:flhf_helpy(display_long)|uniprotkb:HP_1035(locus name)|uniprotkb:flhF(gene name)|psi-mi:flhF(display_short)|uniprotkb:Flagella-associated GTP-binding protein(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324799|imex:IM-22256-450 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25679|refseq:NP_207825.1|refseq:WP_000238399.1|ensemblbacteria:AAD08078(transcript)|ensemblbacteria:HP_1035(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005047"(signal recognition particle binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0006614"(SRP-dependent cotranslational protein targeting to membrane)|go:"GO:0016020"(membrane)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR000897(Signal recognition particle, SRP54 subunit, GTPase)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR020006|interpro:IPR027417|dip:DIP-3259N|uniprotkb:O25679(identity) mint:O25679|refseq:NP_207825.1|refseq:WP_000238399.1|ensemblbacteria:AAD08078(transcript)|ensemblbacteria:HP_1035(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005047"(signal recognition particle binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0006614"(SRP-dependent cotranslational protein targeting to membrane)|go:"GO:0016020"(membrane)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR000897(Signal recognition particle, SRP54 subunit, GTPase)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR020006|interpro:IPR027417|dip:DIP-3259N|uniprotkb:O25679(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum comment:mint|function:Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:14+AfdHCUm8JtDyk14sYWINIKMU85962 rogid:14+AfdHCUm8JtDyk14sYWINIKMU85962 intact-crc:00A9E505B2AA4DCB|rigid:8VCZC83m2OUs6/YJf4TiaUKhsNg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25679 uniprotkb:O25674 intact:EBI-7504443|intact:MINT-179903|ensemblbacteria:AAD08078 intact:EBI-7559878|intact:MINT-4065399|ensemblbacteria:AAD08074 psi-mi:flhf_helpy(display_long)|uniprotkb:HP_1035(locus name)|uniprotkb:flhF(gene name)|psi-mi:flhF(display_short)|uniprotkb:Flagella-associated GTP-binding protein(gene name synonym) psi-mi:o25674_helpy(display_long)|uniprotkb:HP_1030(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324781|imex:IM-22256-449 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25679|refseq:NP_207825.1|refseq:WP_000238399.1|ensemblbacteria:AAD08078(transcript)|ensemblbacteria:HP_1035(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005047"(signal recognition particle binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0006614"(SRP-dependent cotranslational protein targeting to membrane)|go:"GO:0016020"(membrane)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR000897(Signal recognition particle, SRP54 subunit, GTPase)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR020006|interpro:IPR027417|dip:DIP-3259N|uniprotkb:O25679(identity) interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|mint:O25674|refseq:WP_001150629.1|interpro:IPR036429|refseq:NP_207820.1|interpro:IPR028976|ensemblbacteria:AAD08074(transcript)|ensemblbacteria:HP_1030(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|rcsb pdb:5XRW|uniprotkb:O25674(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:14+AfdHCUm8JtDyk14sYWINIKMU85962 rogid:Wh43hksoYo8r/6ZiCbBBRMIq0ko85962 intact-crc:4955F5B83D69C408|rigid:GgVPoFyXjUjYzgdVzLbay/pAiic false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25679 uniprotkb:O25119 intact:EBI-7504443|intact:MINT-179903|ensemblbacteria:AAD08078 intact:EBI-7583244|intact:MINT-166826|ensemblbacteria:AAD07420 psi-mi:flhf_helpy(display_long)|uniprotkb:HP_1035(locus name)|uniprotkb:flhF(gene name)|psi-mi:flhF(display_short)|uniprotkb:Flagella-associated GTP-binding protein(gene name synonym) psi-mi:flig_helpy(display_long)|uniprotkb:fliG(gene name)|psi-mi:fliG(display_short)|uniprotkb:C694_01785(locus name)|uniprotkb:HP_0352(locus name)|uniprotkb:Flagellar motor switch protein G(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324763|imex:IM-22256-448 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25679|refseq:NP_207825.1|refseq:WP_000238399.1|ensemblbacteria:AAD08078(transcript)|ensemblbacteria:HP_1035(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005047"(signal recognition particle binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0006614"(SRP-dependent cotranslational protein targeting to membrane)|go:"GO:0016020"(membrane)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR000897(Signal recognition particle, SRP54 subunit, GTPase)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR020006|interpro:IPR027417|dip:DIP-3259N|uniprotkb:O25679(identity) mint:O25119|refseq:WP_000201853.1|refseq:NP_207150.1|ensemblbacteria:AAD07420(transcript)|ensemblbacteria:HP_0352(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009288"(bacterial-type flagellum)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR000090(Flagellar motor switch protein FliG)|interpro:IPR011002(Flagellar motor switch protein FliG, alpha-helical)|interpro:IPR023087|interpro:IPR028263|interpro:IPR032779|rcsb pdb:3USW|rcsb pdb:3USY|rcsb pdb:4FQ0|rcsb pdb:5WUJ|dip:DIP-3534N|uniprotkb:O25119(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:14+AfdHCUm8JtDyk14sYWINIKMU85962 rogid:88Pu9wPqI7cfXsmfz+lPFljb4pY85962 intact-crc:2ECC18432C272F19|rigid:FYfWj7ti2mE0+91Vo4c+eFTza08 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25693 uniprotkb:O25693 intact:EBI-9261373|ensemblbacteria:AAD08105 intact:EBI-9261373|ensemblbacteria:AAD08105 psi-mi:minc_helpy(display_long)|uniprotkb:minC(gene name)|psi-mi:minC(display_short)|uniprotkb:HP_1053(locus name) psi-mi:minc_helpy(display_long)|uniprotkb:minC(gene name)|psi-mi:minC(display_short)|uniprotkb:HP_1053(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324925|imex:IM-22256-457 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000921052.1|refseq:NP_207844.1|interpro:IPR005526(Septum formation inhibitor MinC, C-terminal)|interpro:IPR013033(Septum formation inhibitor MinC)|interpro:IPR016098(Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal)|interpro:IPR036145|ensemblbacteria:AAD08105(transcript)|ensemblbacteria:HP_1053(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0000917"(division septum assembly)|go:"GO:1901891"(regulation of cell septum assembly)|uniprotkb:O25693(identity) refseq:WP_000921052.1|refseq:NP_207844.1|interpro:IPR005526(Septum formation inhibitor MinC, C-terminal)|interpro:IPR013033(Septum formation inhibitor MinC)|interpro:IPR016098(Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal)|interpro:IPR036145|ensemblbacteria:AAD08105(transcript)|ensemblbacteria:HP_1053(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0000917"(division septum assembly)|go:"GO:1901891"(regulation of cell septum assembly)|uniprotkb:O25693(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bj1yqCAycq4MJipngXWZ34uLzxY85962 rogid:bj1yqCAycq4MJipngXWZ34uLzxY85962 intact-crc:9A7EDE33EC463110|rigid:pIpY378/Z3au4Ppd6ziFBEDo524 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25098 uniprotkb:O25693 intact:EBI-7525931|intact:MINT-161558|ensemblbacteria:AAD07400 intact:EBI-9261373|ensemblbacteria:AAD08105 psi-mi:mind_helpy(display_long)|uniprotkb:Cell division inhibitor MinD(gene name synonym)|uniprotkb:HP_0331(locus name)|uniprotkb:minD(gene name)|psi-mi:minD(display_short) psi-mi:minc_helpy(display_long)|uniprotkb:minC(gene name)|psi-mi:minC(display_short)|uniprotkb:HP_1053(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324907|imex:IM-22256-456 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25098|refseq:WP_001019069.1|refseq:NP_207129.1|ensemblbacteria:AAD07400(transcript)|ensemblbacteria:HP_0331(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR010223(Septum site-determining protein MinD)|interpro:IPR025501|interpro:IPR027417|dip:DIP-3247N|uniprotkb:O25098(identity) refseq:WP_000921052.1|refseq:NP_207844.1|interpro:IPR005526(Septum formation inhibitor MinC, C-terminal)|interpro:IPR013033(Septum formation inhibitor MinC)|interpro:IPR016098(Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal)|interpro:IPR036145|ensemblbacteria:AAD08105(transcript)|ensemblbacteria:HP_1053(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0000917"(division septum assembly)|go:"GO:1901891"(regulation of cell septum assembly)|uniprotkb:O25693(identity) psi-mi:"MI:0469"(intact) comment:mint|function:ATPase required for the correct placement of the division site. Cell division inhibitors minC and minD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize ftsZ filaments that have formed before they mature into polar Z rings - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:g+X6QS/gyLXZ5JsxHvQ8dHSCKMw85962 rogid:bj1yqCAycq4MJipngXWZ34uLzxY85962 intact-crc:ED01E2FC9EAA6A2E|rigid:9ZIMvDgATvzy+7n0k4+XqRVt5Tk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25686 uniprotkb:O25756 intact:EBI-7493806|intact:MINT-164557|ensemblbacteria:AAD08090 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:acsa_helpy(display_long)|uniprotkb:acsA(gene name)|psi-mi:acsA(display_short)|uniprotkb:acs(gene name synonym)|uniprotkb:HP_1045(locus name)|uniprotkb:Acetate--CoA ligase(gene name synonym)|uniprotkb:Acyl-activating enzyme(gene name synonym) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324889|imex:IM-22256-455 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25686|refseq:NP_207835.1|refseq:WP_001175410.1|ensemblbacteria:AAD08090(transcript)|ensemblbacteria:HP_1045(gene)|go:"GO:0003987"(acetate-CoA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016208"(AMP binding)|go:"GO:0019427"(acetyl-CoA biosynthetic process from acetate)|go:"GO:0046872"(metal ion binding)|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011904(Acetate--CoA ligase)|interpro:IPR020845|interpro:IPR025110|interpro:IPR032387|interpro:IPR042099|dip:DIP-3168N|uniprotkb:O25686(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:EdYW+cpZXBFSCCV6Lx/T0aRT5qQ85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:7E82C7626FFAD63A|rigid:qddUoRq1fceyQ/Rsal2VZVlcIoQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25686 uniprotkb:O25519 intact:EBI-7493806|intact:MINT-164557|ensemblbacteria:AAD08090 intact:EBI-9265942|ensemblbacteria:AAD07897 psi-mi:acsa_helpy(display_long)|uniprotkb:acsA(gene name)|psi-mi:acsA(display_short)|uniprotkb:acs(gene name synonym)|uniprotkb:HP_1045(locus name)|uniprotkb:Acetate--CoA ligase(gene name synonym)|uniprotkb:Acyl-activating enzyme(gene name synonym) psi-mi:o25519_helpy(display_long)|uniprotkb:HP_0848(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324871|imex:IM-22256-454 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25686|refseq:NP_207835.1|refseq:WP_001175410.1|ensemblbacteria:AAD08090(transcript)|ensemblbacteria:HP_1045(gene)|go:"GO:0003987"(acetate-CoA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016208"(AMP binding)|go:"GO:0019427"(acetyl-CoA biosynthetic process from acetate)|go:"GO:0046872"(metal ion binding)|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011904(Acetate--CoA ligase)|interpro:IPR020845|interpro:IPR025110|interpro:IPR032387|interpro:IPR042099|dip:DIP-3168N|uniprotkb:O25686(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_207641.1|ensemblbacteria:AAD07897(transcript)|ensemblbacteria:HP_0848(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O25519(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:EdYW+cpZXBFSCCV6Lx/T0aRT5qQ85962 rogid:RPUVm8wh6OTcYujMRcjEMj8IrdE85962 intact-crc:8F27C08FDC8A2B66|rigid:imeiaC5036gXTF/3E0K2Gb2EdHM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56044 uniprotkb:O25684 intact:EBI-9261001|ensemblbacteria:AAD08191 intact:EBI-9267313|ensemblbacteria:AAD08088 psi-mi:rl19_helpy(display_long)|uniprotkb:rplS(gene name)|psi-mi:rplS(display_short)|uniprotkb:HP_1147(locus name) psi-mi:o25684_helpy(display_long)|uniprotkb:HP_1043(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324853|imex:IM-22256-453 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000797699.1|interpro:IPR001857(Ribosomal protein L19)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR018257|refseq:NP_207938.1|interpro:IPR038657|ensemblbacteria:AAD08191(transcript)|ensemblbacteria:HP_1147(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56044(identity) refseq:WP_001264982.1|interpro:IPR039420|interpro:IPR036388|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|rcsb pdb:2PLN|refseq:NP_207833.1|ensemblbacteria:AAD08088(transcript)|ensemblbacteria:HP_1043(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|uniprotkb:O25684(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nSldGvsSYOnzUDqkFrp6p2IdgB485962 rogid:yC68Rj5sMfcts8ZYcM3ryOKmo6U85962 intact-crc:DEEBB0929E437A4E|rigid:JTe41risR7Q1OnG6BH+yakXV1a4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25707 uniprotkb:O25684 intact:EBI-7607688|intact:MINT-162871|ensemblbacteria:AAD08122 intact:EBI-9267313|ensemblbacteria:AAD08088 psi-mi:o25707_helpy(display_long)|uniprotkb:HP_1074(locus name) psi-mi:o25684_helpy(display_long)|uniprotkb:HP_1043(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324835|imex:IM-22256-452 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862769.1|mint:O25707|refseq:NP_207865.1|ensemblbacteria:AAD08122(transcript)|ensemblbacteria:HP_1074(gene)|dip:DIP-3641N|uniprotkb:O25707(identity) refseq:WP_001264982.1|interpro:IPR039420|interpro:IPR036388|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|rcsb pdb:2PLN|refseq:NP_207833.1|ensemblbacteria:AAD08088(transcript)|ensemblbacteria:HP_1043(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|uniprotkb:O25684(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:76b3TtdjvRQbevyc2nRzlXtx25Q85962 rogid:yC68Rj5sMfcts8ZYcM3ryOKmo6U85962 intact-crc:FFE61F75419A49D6|rigid:dOol0AtHNWgtY68FzDhOjE3SkiY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25716 uniprotkb:O25045 intact:EBI-7552395|intact:MINT-169791|ensemblbacteria:AAD08128 intact:EBI-9261500|ensemblbacteria:AAD07332 psi-mi:pyrb_helpy(display_long)|uniprotkb:pyrB(gene name)|psi-mi:pyrB(display_short)|uniprotkb:HP_1084(locus name)|uniprotkb:Aspartate transcarbamylase(gene name synonym) psi-mi:pyrx_helpy(display_long)|uniprotkb:pyrC'(gene name)|psi-mi:pyrC'(display_short)|uniprotkb:Aspartate carbamoyltransferase 42 kDa non-catalytic chain(gene name synonym)|uniprotkb:HP_0266(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325015|imex:IM-22256-462 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001124546.1|mint:O25716|refseq:NP_207875.1|ensemblbacteria:AAD08128(transcript)|ensemblbacteria:HP_1084(gene)|go:"GO:0004070"(aspartate carbamoyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006520"(cellular amino acid metabolic process)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016597"(amino acid binding)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR002082(Aspartate carbamoyltransferase, eukaryotic)|interpro:IPR006130(Aspartate/ornithine carbamoyltransferase)|interpro:IPR006131(Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region)|interpro:IPR006132(Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding)|interpro:IPR036901|dip:DIP-3378N|uniprotkb:O25716(identity) interpro:IPR006680(Amidohydrolase 1)|interpro:IPR032466|refseq:WP_000924910.1|interpro:IPR011059(Metal-dependent hydrolase, composite)|refseq:NP_207064.1|ensemblbacteria:AAD07332(transcript)|ensemblbacteria:HP_0266(gene)|go:"GO:0006221"(pyrimidine nucleotide biosynthetic process)|go:"GO:0016810"("hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds")|uniprotkb:O25045(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wgK7NS8LKFY/1vDxaLhPKUc9GDs85962 rogid:GfBQ5FxwZW0DuMgk2/OUFLzFSqo85962 intact-crc:1EA79BE758B47D31|rigid:W/mNOMz3/iXCBB1BZZh8CxN65rY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25448 uniprotkb:O25709 intact:EBI-7499990|intact:MINT-160305|ensemblbacteria:AAD07803 intact:EBI-7608416|intact:MINT-160299|ensemblbacteria:AAD08123 psi-mi:o25448_helpy(display_long)|uniprotkb:HP_0753(locus name) psi-mi:o25709_helpy(display_long)|uniprotkb:HP_1076(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324997|imex:IM-22256-461 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25448|refseq:WP_001199081.1|refseq:NP_207546.1|ensemblbacteria:AAD07803(transcript)|ensemblbacteria:HP_0753(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR003713(Flagellar protein FliS)|interpro:IPR036584|rcsb pdb:3IQC|rcsb pdb:3K1I|dip:DIP-3458N|uniprotkb:O25448(identity) refseq:WP_000353458.1|mint:O25709|refseq:NP_207867.1|ensemblbacteria:AAD08123(transcript)|ensemblbacteria:HP_1076(gene)|interpro:IPR032411|interpro:IPR038315|rcsb pdb:3K1H|rcsb pdb:3K1I|rcsb pdb:6LEA|dip:DIP-3285N|uniprotkb:O25709(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:cteyYkuK7MMhuLoDSwYpQRstj3U85962 rogid:fMWebz6r3muf3EEFKm1/6dzsdZo85962 intact-crc:721557FD0F69EFC0|rigid:ty0GmDvOVvdhE+E2ILgQqGdzUA4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25446 uniprotkb:O25709 intact:EBI-7493854|intact:MINT-164516|ensemblbacteria:AAD07802 intact:EBI-7608416|intact:MINT-160299|ensemblbacteria:AAD08123 psi-mi:o25446_helpy(display_long)|uniprotkb:HP_0750(locus name) psi-mi:o25709_helpy(display_long)|uniprotkb:HP_1076(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324979|imex:IM-22256-460 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25446|refseq:NP_207543.1|refseq:WP_000277334.1|ensemblbacteria:AAD07802(transcript)|ensemblbacteria:HP_0750(gene)|interpro:IPR011055(Duplicated hybrid motif)|interpro:IPR016047(Peptidase M23)|dip:DIP-3312N|uniprotkb:O25446(identity) refseq:WP_000353458.1|mint:O25709|refseq:NP_207867.1|ensemblbacteria:AAD08123(transcript)|ensemblbacteria:HP_1076(gene)|interpro:IPR032411|interpro:IPR038315|rcsb pdb:3K1H|rcsb pdb:3K1I|rcsb pdb:6LEA|dip:DIP-3285N|uniprotkb:O25709(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YHQbJlaPCQfqcXV6yHl68EepjeQ85962 rogid:fMWebz6r3muf3EEFKm1/6dzsdZo85962 intact-crc:BDD0DA9F058E5E4A|rigid:hbX5y6w4ETgrur65QD310E2oI6I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25703 uniprotkb:P94845 intact:EBI-7731853|ensemblbacteria:AAD08103|intact:MINT-178328 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 psi-mi:rsmg_helpy(display_long)|uniprotkb:HP_1063(locus name)|uniprotkb:16S rRNA 7-methylguanosine methyltransferase(gene name synonym)|uniprotkb:rsmG(gene name)|psi-mi:rsmG(display_short) psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324961|imex:IM-22256-459 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25703|ensemblbacteria:AAD08103(transcript)|ensemblbacteria:HP_1063(gene)|go:"GO:0005829"(cytosol)|go:"GO:0070043"("rRNA (guanine-N7-)-methyltransferase activity")|interpro:IPR003682(Glucose inhibited division protein)|interpro:IPR029063|refseq:WP_001068828.1|refseq:NP_207854.1|dip:DIP-3515N|uniprotkb:O25703(identity) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Probable S-adenosyl-L-methionine dependent methyltransferase specific for a sterol and/or lipid substrate comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UyDSkNX+Z2KVGFE5C/PRIkQpR5Q85962 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 intact-crc:59235E7BA7FBEAAA|rigid:fJZAIp8Xa9FUYk9I747Xq3hp0HA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25703 uniprotkb:O25488 intact:EBI-7731853|ensemblbacteria:AAD08103|intact:MINT-178328 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:rsmg_helpy(display_long)|uniprotkb:HP_1063(locus name)|uniprotkb:16S rRNA 7-methylguanosine methyltransferase(gene name synonym)|uniprotkb:rsmG(gene name)|psi-mi:rsmG(display_short) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9324943|imex:IM-22256-458 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25703|ensemblbacteria:AAD08103(transcript)|ensemblbacteria:HP_1063(gene)|go:"GO:0005829"(cytosol)|go:"GO:0070043"("rRNA (guanine-N7-)-methyltransferase activity")|interpro:IPR003682(Glucose inhibited division protein)|interpro:IPR029063|refseq:WP_001068828.1|refseq:NP_207854.1|dip:DIP-3515N|uniprotkb:O25703(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Probable S-adenosyl-L-methionine dependent methyltransferase specific for a sterol and/or lipid substrate - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UyDSkNX+Z2KVGFE5C/PRIkQpR5Q85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:A2F62FF38812EBEB|rigid:ldlelcT7pFO4YpUAwaaCoUzJzps false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25720 uniprotkb:P56119 intact:EBI-7555772|intact:MINT-183980|ensemblbacteria:AAD08131 intact:EBI-9267556|ensemblbacteria:AAD08294 psi-mi:o25720_helpy(display_long)|uniprotkb:HP_1088(locus name) psi-mi:aroe_helpy(display_long)|uniprotkb:aroE(gene name)|psi-mi:aroE(display_short)|uniprotkb:HP_1249(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325105|imex:IM-22256-467 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001239827.1|mint:O25720|refseq:NP_207879.1|ensemblbacteria:AAD08131(transcript)|ensemblbacteria:HP_1088(gene)|go:"GO:0004802"(transketolase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006098"(pentose-phosphate shunt)|go:"GO:0016021"(integral component of membrane)|go:"GO:0046872"(metal ion binding)|interpro:IPR005474(Transketolase, N-terminal)|interpro:IPR005475(Transketolase, central region)|interpro:IPR005478(Bacterial transketolase)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|interpro:IPR033247|interpro:IPR033248|dip:DIP-3387N|uniprotkb:O25720(identity) refseq:WP_000769617.1|interpro:IPR036291|interpro:IPR011342(Quinate/shikimate 5-dehydrogenase)|interpro:IPR013708(Shikimate dehydrogenase substrate binding, N-terminal)|interpro:IPR022893|rcsb pdb:3PHG|rcsb pdb:3PHH|rcsb pdb:3PHI|rcsb pdb:3PHJ|rcsb pdb:4FOO|rcsb pdb:4FOS|rcsb pdb:4FPX|rcsb pdb:4FQ8|rcsb pdb:4FR5|rcsb pdb:4FSH|refseq:NP_208041.1|ensemblbacteria:AAD08294(transcript)|ensemblbacteria:HP_1249(gene)|go:"GO:0004764"("shikimate 3-dehydrogenase (NADP+) activity")|go:"GO:0005829"(cytosol)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0019632"(shikimate metabolic process)|go:"GO:0050661"(NADP binding)|uniprotkb:P56119(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gZsbTZSLeISEFB/RbwfjeKEBDwY85962 rogid:m1PNMPvDr/msfYmJGdoDMKIK6eE85962 intact-crc:DB70E897DCAB42A8|rigid:mhBAzkGKNp6lSU2n0ICpybtifZ0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25718 uniprotkb:Q9ZKJ9 intact:EBI-7735728|ensemblbacteria:AAD08129|intact:MINT-164771 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:o25718_helpy(display_long)|uniprotkb:HP_1086(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325087|imex:IM-22256-466 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0006364"(rRNA processing)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR002877(Ribosomal RNA methyltransferase RrmJ/FtsJ)|interpro:IPR002942(RNA-binding S4)|interpro:IPR004538(Haemolysin A)|interpro:IPR029063|interpro:IPR036986|mint:O25718|ensemblbacteria:AAD08129(transcript)|ensemblbacteria:HP_1086(gene)|go:"GO:0003723"(RNA binding)|refseq:WP_001235220.1|refseq:NP_207877.1|dip:DIP-3649N|uniprotkb:O25718(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Q/HgyXZMgeTwTPGamvt3/pp74ac85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:093BFB8596EB311E|rigid:z2Ksa3T0l9QEbioAmSDDCJuqZN0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25718 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-7735728|ensemblbacteria:AAD08129|intact:MINT-164771 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o25718_helpy(display_long)|uniprotkb:HP_1086(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325069|imex:IM-22256-465 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) go:"GO:0006364"(rRNA processing)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR002877(Ribosomal RNA methyltransferase RrmJ/FtsJ)|interpro:IPR002942(RNA-binding S4)|interpro:IPR004538(Haemolysin A)|interpro:IPR029063|interpro:IPR036986|mint:O25718|ensemblbacteria:AAD08129(transcript)|ensemblbacteria:HP_1086(gene)|go:"GO:0003723"(RNA binding)|refseq:WP_001235220.1|refseq:NP_207877.1|dip:DIP-3649N|uniprotkb:O25718(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:Q/HgyXZMgeTwTPGamvt3/pp74ac85962 intact-crc:60F554441CE6D969|rigid:DGgwC7dn9eu397QGRmtbjOcZbpU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25718 uniprotkb:O25488 intact:EBI-7735728|ensemblbacteria:AAD08129|intact:MINT-164771 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:o25718_helpy(display_long)|uniprotkb:HP_1086(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325051|imex:IM-22256-464 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0006364"(rRNA processing)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR002877(Ribosomal RNA methyltransferase RrmJ/FtsJ)|interpro:IPR002942(RNA-binding S4)|interpro:IPR004538(Haemolysin A)|interpro:IPR029063|interpro:IPR036986|mint:O25718|ensemblbacteria:AAD08129(transcript)|ensemblbacteria:HP_1086(gene)|go:"GO:0003723"(RNA binding)|refseq:WP_001235220.1|refseq:NP_207877.1|dip:DIP-3649N|uniprotkb:O25718(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Q/HgyXZMgeTwTPGamvt3/pp74ac85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:2375BDF837430BCA|rigid:hreCSa6ECvtSPNlPzzvHNiReRng false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25272 uniprotkb:O25718 intact:EBI-7651076|ensemblbacteria:AAD07605|intact:MINT-161915 intact:EBI-7735728|ensemblbacteria:AAD08129|intact:MINT-164771 psi-mi:o25272_helpy(display_long)|uniprotkb:HP_0539(locus name) psi-mi:o25718_helpy(display_long)|uniprotkb:HP_1086(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325033|imex:IM-22256-463 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25272|ensemblbacteria:AAD07605(transcript)|ensemblbacteria:HP_0539(gene)|rcsb pdb:3ZCI|rcsb pdb:3ZCJ|rcsb pdb:4CII|rcsb pdb:4X5U|refseq:NP_207335.1|refseq:WP_000855299.1|dip:DIP-3544N|uniprotkb:O25272(identity) go:"GO:0006364"(rRNA processing)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR002877(Ribosomal RNA methyltransferase RrmJ/FtsJ)|interpro:IPR002942(RNA-binding S4)|interpro:IPR004538(Haemolysin A)|interpro:IPR029063|interpro:IPR036986|mint:O25718|ensemblbacteria:AAD08129(transcript)|ensemblbacteria:HP_1086(gene)|go:"GO:0003723"(RNA binding)|refseq:WP_001235220.1|refseq:NP_207877.1|dip:DIP-3649N|uniprotkb:O25718(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nQvUcaMFjvL0wOk4hyIagpwGQ5s85962 rogid:Q/HgyXZMgeTwTPGamvt3/pp74ac85962 intact-crc:724491113C2C42C1|rigid:So32fL8fzSH35xzT9/MtLwhu5gc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25724 uniprotkb:O25207 intact:EBI-7548352|intact:MINT-160184|ensemblbacteria:AAD08138 intact:EBI-9262855|ensemblbacteria:AAD07537 psi-mi:o25724_helpy(display_long)|uniprotkb:HP_1092(locus name) psi-mi:o25207_helpy(display_long)|uniprotkb:HP_0460(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325195|imex:IM-22256-472 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001179202.1|mint:O25724|refseq:NP_207883.1|ensemblbacteria:AAD08138(transcript)|ensemblbacteria:HP_1092(gene)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|interpro:IPR020013|interpro:IPR037925|dip:DIP-3379N|uniprotkb:O25724(identity) ensemblbacteria:AAD07537(transcript)|ensemblbacteria:HP_0460(gene)|uniprotkb:O25207(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lhG6xCVqF0mT6zi7sJ1idmjyEA485962 rogid:uYzF+bfesHFG7oGtd+x5ChxcYRI85962 intact-crc:22C5CD3950C308C1|rigid:tl+BpZWrK5pOKFtNBWp5RpsTBx8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZL79 uniprotkb:O25721 intact:EBI-9262981|ensemblbacteria:AAD06276 intact:EBI-9262771|ensemblbacteria:AAD08136 psi-mi:q9zl79_helpj(display_long)|uniprotkb:jhp_0701(locus name) psi-mi:o25721_helpy(display_long)|uniprotkb:HP_1089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325177|imex:IM-22256-471 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005358(Protein of unknown function UPF0153)|ensemblbacteria:AAD06276(transcript)|ensemblbacteria:jhp_0701(gene)|uniprotkb:Q9ZL79(identity) refseq:WP_001047444.1|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR027417|refseq:NP_207880.1|interpro:IPR038726|ensemblbacteria:AAD08136(transcript)|ensemblbacteria:HP_1089(gene)|uniprotkb:O25721(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lF/xSeC5ME9IUHouS6yOLLg1grE85963 rogid:cj4UolBD2x+jJMZNF8agkRv6zTQ85962 intact-crc:FEA43EC3470DB642|rigid:rg8xQiEdtP0aaOiuy+MrYCQEvJ0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25756 uniprotkb:O25721 intact:EBI-9261023|ensemblbacteria:AAD08177 intact:EBI-9262771|ensemblbacteria:AAD08136 psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:o25721_helpy(display_long)|uniprotkb:HP_1089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325159|imex:IM-22256-470 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) refseq:WP_001047444.1|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR027417|refseq:NP_207880.1|interpro:IPR038726|ensemblbacteria:AAD08136(transcript)|ensemblbacteria:HP_1089(gene)|uniprotkb:O25721(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 rogid:cj4UolBD2x+jJMZNF8agkRv6zTQ85962 intact-crc:B37ABCB42661B073|rigid:CuuCyaIpxZBj1DiGIuKz9wSdDdk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25186 uniprotkb:O25721 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9262771|ensemblbacteria:AAD08136 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o25721_helpy(display_long)|uniprotkb:HP_1089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325141|imex:IM-22256-469 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) refseq:WP_001047444.1|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR027417|refseq:NP_207880.1|interpro:IPR038726|ensemblbacteria:AAD08136(transcript)|ensemblbacteria:HP_1089(gene)|uniprotkb:O25721(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:cj4UolBD2x+jJMZNF8agkRv6zTQ85962 intact-crc:E47D8AD47411D973|rigid:UW/xUu5PrEHvdkcSoQuIxKpKK9c false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25185 uniprotkb:O25721 intact:EBI-7556532|intact:MINT-166764|ensemblbacteria:AAD07506 intact:EBI-9262771|ensemblbacteria:AAD08136 psi-mi:o25185_helpy(display_long)|uniprotkb:HP_0435(locus name) psi-mi:o25721_helpy(display_long)|uniprotkb:HP_1089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325123|imex:IM-22256-468 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25185|ensemblbacteria:AAD07506(transcript)|ensemblbacteria:HP_0435(gene)|go:"GO:0004386"(helicase activity)|interpro:IPR041677|interpro:IPR027417|dip:DIP-3394N|uniprotkb:O25185(identity) refseq:WP_001047444.1|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR027417|refseq:NP_207880.1|interpro:IPR038726|ensemblbacteria:AAD08136(transcript)|ensemblbacteria:HP_1089(gene)|uniprotkb:O25721(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wo8lRDnMrBLGNLrCPjLFcu6Aemc85962 rogid:cj4UolBD2x+jJMZNF8agkRv6zTQ85962 intact-crc:56174E87CED58AC9|rigid:4v5ndM802Qe6TZYfefhu+6+Ty+0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25724 uniprotkb:P56188 intact:EBI-7548352|intact:MINT-160184|ensemblbacteria:AAD08138 intact:EBI-9267680|ensemblbacteria:AAD08425 psi-mi:o25724_helpy(display_long)|uniprotkb:HP_1092(locus name) psi-mi:rpe_helpy(display_long)|uniprotkb:rpe(gene name)|psi-mi:rpe(display_short)|uniprotkb:HP_1386(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325249|imex:IM-22256-475 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001179202.1|mint:O25724|refseq:NP_207883.1|ensemblbacteria:AAD08138(transcript)|ensemblbacteria:HP_1092(gene)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|interpro:IPR020013|interpro:IPR037925|dip:DIP-3379N|uniprotkb:O25724(identity) refseq:WP_000861474.1|interpro:IPR000056(Ribulose-phosphate 3-epimerase)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR026019|refseq:NP_208177.1|ensemblbacteria:AAD08425(transcript)|ensemblbacteria:HP_1386(gene)|go:"GO:0004750"(D-ribulose-phosphate 3-epimerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0009052"(pentose-phosphate shunt, non-oxidative branch)|go:"GO:0019323"(pentose catabolic process)|go:"GO:0044262"(cellular carbohydrate metabolic process)|go:"GO:0046872"(metal ion binding)|uniprotkb:P56188(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lhG6xCVqF0mT6zi7sJ1idmjyEA485962 rogid:Utvb3Lj255Zj4s5/PRoOiUlCuVg85962 intact-crc:A3A4B7574CBBC46B|rigid:qCL0Hj2ERNNHcBpyfeHdRvEgpQQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56132 uniprotkb:O25724 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-7548352|intact:MINT-160184|ensemblbacteria:AAD08138 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:o25724_helpy(display_long)|uniprotkb:HP_1092(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325231|imex:IM-22256-474 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) refseq:WP_001179202.1|mint:O25724|refseq:NP_207883.1|ensemblbacteria:AAD08138(transcript)|ensemblbacteria:HP_1092(gene)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|interpro:IPR020013|interpro:IPR037925|dip:DIP-3379N|uniprotkb:O25724(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:lhG6xCVqF0mT6zi7sJ1idmjyEA485962 intact-crc:8131E67A080BB746|rigid:Wjtx8qG8rj32kbygFzVs3vAZ+vM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25769 uniprotkb:O25724 intact:EBI-7500041|intact:MINT-169612|ensemblbacteria:AAD08203 intact:EBI-7548352|intact:MINT-160184|ensemblbacteria:AAD08138 psi-mi:fliw1_helpy(display_long)|uniprotkb:HP_1154(locus name)|uniprotkb:fliW1(gene name)|psi-mi:fliW1(display_short) psi-mi:o25724_helpy(display_long)|uniprotkb:HP_1092(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325213|imex:IM-22256-473 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25769|refseq:WP_001105854.1|refseq:NP_207945.1|ensemblbacteria:AAD08203(transcript)|ensemblbacteria:HP_1154(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|dip:DIP-3307N|uniprotkb:O25769(identity) refseq:WP_001179202.1|mint:O25724|refseq:NP_207883.1|ensemblbacteria:AAD08138(transcript)|ensemblbacteria:HP_1092(gene)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|interpro:IPR020013|interpro:IPR037925|dip:DIP-3379N|uniprotkb:O25724(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:akwR8LvQZuOb1rNt4vqG2NubfHU85962 rogid:lhG6xCVqF0mT6zi7sJ1idmjyEA485962 intact-crc:7AD01F65DD42A796|rigid:WX8CGg8bobt/gVQBA7nifGYH7Nw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55977 uniprotkb:O25726 intact:EBI-7723667|ensemblbacteria:AAD08555|intact:MINT-4077929 intact:EBI-9263129|ensemblbacteria:AAD08147 psi-mi:nusa_helpy(display_long)|uniprotkb:nusA(gene name)|psi-mi:nusA(display_short)|uniprotkb:HP_1514(locus name) psi-mi:o25726_helpy(display_long)|uniprotkb:HP_1094(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325285|imex:IM-22256-477 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55977|ensemblbacteria:AAD08555(transcript)|ensemblbacteria:HP_1514(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0031564"(transcription antitermination)|interpro:IPR003029(S1, RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR010213(Transcription termination factor NusA)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013735(Transcription factor NusA, N-terminal)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR022967|interpro:IPR025249|interpro:IPR030842|interpro:IPR036555|refseq:WP_000411646.1|refseq:NP_208305.1|dip:DIP-3664N|uniprotkb:P55977(identity) refseq:WP_010875592.1|refseq:NP_207885.1|ensemblbacteria:AAD08147(transcript)|ensemblbacteria:HP_1094(gene)|uniprotkb:O25726(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RTwa+hy08+YPTH/PON5T0ltkljM85962 rogid:0zJ77Ponsbl4Xf7C20HGyco/c9M85962 intact-crc:03B8E5CC830599E2|rigid:RxPfN3devzWnThpjsRfwcNA8i0Y false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56462 uniprotkb:O25725 intact:EBI-7505292|intact:MINT-164654|ensemblbacteria:AAD07973 intact:EBI-9267696|ensemblbacteria:AAD08149 psi-mi:gch1_helpy(display_long)|uniprotkb:folE(gene name)|psi-mi:folE(display_short)|uniprotkb:HP_0928(locus name)|uniprotkb:GTP cyclohydrolase I(gene name synonym) psi-mi:o25725_helpy(display_long)|uniprotkb:HP_1093(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325267|imex:IM-22256-476 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56462|refseq:WP_000427004.1|refseq:NP_207720.1|go:"GO:0008270"(zinc ion binding)|go:"GO:0035998"(7,8-dihydroneopterin 3'-triphosphate biosynthetic process)|go:"GO:0046654"(tetrahydrofolate biosynthetic process)|interpro:IPR001474(GTP cyclohydrolase I)|interpro:IPR018234|interpro:IPR020602|interpro:IPR043133|interpro:IPR043134|ensemblbacteria:AAD07973(transcript)|ensemblbacteria:HP_0928(gene)|go:"GO:0003934"(GTP cyclohydrolase I activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006729"(tetrahydrobiopterin biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|dip:DIP-3586N|uniprotkb:P56462(identity) ensemblbacteria:AAD08149(transcript)|ensemblbacteria:HP_1093(gene)|uniprotkb:O25725(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JNWwOUF1bUepzK0YVn3ctvDZiY885962 rogid:FW037ZGQixS6D9r1HD5hpL73o/E85962 intact-crc:D0698A14AD1D0B1B|rigid:Vy5DuGRxbXrim+p0s7Q5A9aBfmw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25744 uniprotkb:P66269 intact:EBI-7495544|intact:MINT-174659|ensemblbacteria:AAD08163 intact:EBI-9265809|uniprotkb:P56057|ensemblbacteria:AAD07195 psi-mi:o25744_helpy(display_long)|uniprotkb:HP_1119(locus name) psi-mi:rl35_helpy(display_long)|uniprotkb:rpmI(gene name)|psi-mi:rpmI(display_short)|uniprotkb:HP_0125(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325375|imex:IM-22256-482 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25744|refseq:NP_207910.1|ensemblbacteria:AAD08163(transcript)|ensemblbacteria:HP_1119(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009424"(bacterial-type flagellum hook)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR002371(Flagellar hook-associated protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|refseq:WP_000508899.1|dip:DIP-3213N|uniprotkb:O25744(identity) refseq:WP_001125542.1|interpro:IPR001706(Ribosomal protein L35)|interpro:IPR018265|interpro:IPR021137|refseq:NP_206925.1|interpro:IPR037229|ensemblbacteria:AAD07195(transcript)|ensemblbacteria:HP_0125(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P66269(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lVVDJpejwMKRcpAVAq9yUA7NStw85962 rogid:nqv/YwVuZmlPcA4kNES9/1bGRFY85962 intact-crc:BA4DA33511BE8F00|rigid:eq6UuPme/n9YVXpP0KXkqmmP4ls false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25742 uniprotkb:O25742 intact:EBI-9267769|ensemblbacteria:AAD08161 intact:EBI-9267769|ensemblbacteria:AAD08161 psi-mi:o25742_helpy(display_long)|uniprotkb:HP_1117(locus name) psi-mi:o25742_helpy(display_long)|uniprotkb:HP_1117(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325357|imex:IM-22256-481 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011990(Tetratricopeptide-like helical)|refseq:WP_000540113.1|interpro:IPR006597(Sel1-like)|refseq:NP_207908.1|ensemblbacteria:AAD08161(transcript)|ensemblbacteria:HP_1117(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008800"(beta-lactamase activity)|go:"GO:0046677"(response to antibiotic)|uniprotkb:O25742(identity) interpro:IPR011990(Tetratricopeptide-like helical)|refseq:WP_000540113.1|interpro:IPR006597(Sel1-like)|refseq:NP_207908.1|ensemblbacteria:AAD08161(transcript)|ensemblbacteria:HP_1117(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008800"(beta-lactamase activity)|go:"GO:0046677"(response to antibiotic)|uniprotkb:O25742(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:HwhxeRnha5P7QPHhbbh6w/KwmS085962 rogid:HwhxeRnha5P7QPHhbbh6w/KwmS085962 intact-crc:BA7B939D821047F3|rigid:afdQQaEIGGj8DdtXttQQkfi69TA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24944 uniprotkb:O25742 intact:EBI-9267766|ensemblbacteria:AAD07199 intact:EBI-9267769|ensemblbacteria:AAD08161 psi-mi:o24944_helpy(display_long)|uniprotkb:HP_0130(locus name) psi-mi:o25742_helpy(display_long)|uniprotkb:HP_1117(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325339|imex:IM-22256-480 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000821582.1|refseq:NP_206930.1|ensemblbacteria:AAD07199(transcript)|ensemblbacteria:HP_0130(gene)|uniprotkb:O24944(identity) interpro:IPR011990(Tetratricopeptide-like helical)|refseq:WP_000540113.1|interpro:IPR006597(Sel1-like)|refseq:NP_207908.1|ensemblbacteria:AAD08161(transcript)|ensemblbacteria:HP_1117(gene)|go:"GO:0008047"(enzyme activator activity)|go:"GO:0008800"(beta-lactamase activity)|go:"GO:0046677"(response to antibiotic)|uniprotkb:O25742(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:umr9pNnpznMXT4X+Tz4kT2YCo4A85962 rogid:HwhxeRnha5P7QPHhbbh6w/KwmS085962 intact-crc:93D36A2EB599E038|rigid:+RnkkhpJc8oJTVVwxQAwza1H2v4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:O25741 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-7525630|intact:MINT-181394|ensemblbacteria:AAD08165 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o25741_helpy(display_long)|uniprotkb:HP_1115(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325321|imex:IM-22256-479 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) mint:O25741|refseq:WP_010875593.1|refseq:NP_207906.1|ensemblbacteria:AAD08165(transcript)|ensemblbacteria:HP_1115(gene)|dip:DIP-3251N|uniprotkb:O25741(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:wdpmeaUqLsh2vIIf32nYX52fGGs85962 intact-crc:3F61B50C88143659|rigid:hbW4KRMghTYyveNYRdDEghTRtLY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25731 uniprotkb:O25731 intact:EBI-9267729|ensemblbacteria:AAD08146 intact:EBI-9267729|ensemblbacteria:AAD08146 psi-mi:glk_helpy(display_long)|uniprotkb:glk(gene name)|psi-mi:glk(display_short)|uniprotkb:Glucose kinase(gene name synonym)|uniprotkb:HP_1103(locus name) psi-mi:glk_helpy(display_long)|uniprotkb:glk(gene name)|psi-mi:glk(display_short)|uniprotkb:Glucose kinase(gene name synonym)|uniprotkb:HP_1103(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325303|imex:IM-22256-478 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001126886.1|interpro:IPR003836(Glucokinase)|refseq:NP_207894.1|interpro:IPR043129|ensemblbacteria:AAD08146(transcript)|ensemblbacteria:HP_1103(gene)|go:"GO:0004340"(glucokinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005536"(glucose binding)|go:"GO:0005829"(cytosol)|go:"GO:0006096"(glycolytic process)|uniprotkb:O25731(identity) refseq:WP_001126886.1|interpro:IPR003836(Glucokinase)|refseq:NP_207894.1|interpro:IPR043129|ensemblbacteria:AAD08146(transcript)|ensemblbacteria:HP_1103(gene)|go:"GO:0004340"(glucokinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005536"(glucose binding)|go:"GO:0005829"(cytosol)|go:"GO:0006096"(glycolytic process)|uniprotkb:O25731(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/1/76bN+UHSo7+RNSoftAJFFRi485962 rogid:/1/76bN+UHSo7+RNSoftAJFFRi485962 intact-crc:C9423EC424B1F3F3|rigid:FmeEwGe/CEaRWFVrbh+DpyvDKIQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25754 uniprotkb:O25753 intact:EBI-7653735|ensemblbacteria:AAD08171|intact:MINT-164494 intact:EBI-9267850|ensemblbacteria:AAD08183 psi-mi:exdl1_helpy(display_long)|uniprotkb:HP_1129(locus name) psi-mi:o25753_helpy(display_long)|uniprotkb:HP_1128(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325429|imex:IM-22256-485 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08171(transcript)|ensemblbacteria:HP_1129(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0022857"(transmembrane transporter activity)|interpro:IPR003400(Biopolymer transport protein ExbD/TolR)|mint:O25754|refseq:NP_207920.1|refseq:WP_001105106.1|dip:DIP-3550N|uniprotkb:O25754(identity) ensemblbacteria:AAD08183(transcript)|ensemblbacteria:HP_1128(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25753(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zA9fWUgDJHLw2n/n3gdqcOyvR/I85962 rogid:8dZ+A+D0iYMDj53dq7ID91WsFBQ85962 intact-crc:50ADCD033A5E0B7F|rigid:vlhn4Btj1XjzRRgw1ctmKq6kN+4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25754 uniprotkb:O25423 intact:EBI-7653735|ensemblbacteria:AAD08171|intact:MINT-164494 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:exdl1_helpy(display_long)|uniprotkb:HP_1129(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325411|imex:IM-22256-484 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08171(transcript)|ensemblbacteria:HP_1129(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0022857"(transmembrane transporter activity)|interpro:IPR003400(Biopolymer transport protein ExbD/TolR)|mint:O25754|refseq:NP_207920.1|refseq:WP_001105106.1|dip:DIP-3550N|uniprotkb:O25754(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zA9fWUgDJHLw2n/n3gdqcOyvR/I85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:A5EEBCA297EE7AD2|rigid:SbWHagQIBW0LUnzNYvGLmLJPL2s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25744 uniprotkb:Q9ZLF1 intact:EBI-7495544|intact:MINT-174659|ensemblbacteria:AAD08163 intact:EBI-9267817|ensemblbacteria:AAD06206 psi-mi:o25744_helpy(display_long)|uniprotkb:HP_1119(locus name) psi-mi:q9zlf1_helpj(display_long)|uniprotkb:jhp_0629(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325393|imex:IM-22256-483 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25744|refseq:NP_207910.1|ensemblbacteria:AAD08163(transcript)|ensemblbacteria:HP_1119(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009424"(bacterial-type flagellum hook)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR002371(Flagellar hook-associated protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|refseq:WP_000508899.1|dip:DIP-3213N|uniprotkb:O25744(identity) refseq:WP_001121730.1|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002941(DNA methylase N-4/N-6)|interpro:IPR017985|interpro:IPR029063|ensemblbacteria:AAD06206(transcript)|ensemblbacteria:jhp_0629(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0015667"("site-specific DNA-methyltransferase (cytosine-N4-specific) activity")|uniprotkb:Q9ZLF1(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lVVDJpejwMKRcpAVAq9yUA7NStw85962 rogid:JE/z/ieywXNLjg6/Sx0hMlIUcn485963 intact-crc:C565B756169CE176|rigid:E699DHQmIoICPM2A3XnYuijGQsQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56120 uniprotkb:O25764 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-7609534|intact:MINT-163054|ensemblbacteria:AAD08200 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:o25764_helpy(display_long)|uniprotkb:HP_1145(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325501|imex:IM-22256-489 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) mint:O25764|ensemblbacteria:AAD08200(transcript)|ensemblbacteria:HP_1145(gene)|interpro:IPR021139|dip:DIP-3653N|uniprotkb:O25764(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:6UHcZtDYuEpykgLcL4zPBB85+XI85962 intact-crc:354329E277CDB9F9|rigid:yzJ3msMYsuKNv1jmZceNprsxAh4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25678 uniprotkb:O25757 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9267895|ensemblbacteria:AAD08179 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o25757_helpy(display_long)|uniprotkb:HP_1137(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325483|imex:IM-22256-488 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_001027591.1|interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|refseq:NP_207928.1|ensemblbacteria:AAD08179(transcript)|ensemblbacteria:HP_1137(gene)|go:"GO:0015078"(proton transmembrane transporter activity)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)")|uniprotkb:O25757(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:3yDak1s+lH0NNAp0AgSbYlW+zJM85962 intact-crc:6BCE99B71249AB25|rigid:cxAO2LJIu2+juh9J9dUpXX04nI4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25754 uniprotkb:Q9ZKI0 intact:EBI-7653735|ensemblbacteria:AAD08171|intact:MINT-164494 intact:EBI-9265661|ensemblbacteria:AAD06537 psi-mi:exdl1_helpy(display_long)|uniprotkb:HP_1129(locus name) psi-mi:q9zki0_helpj(display_long)|uniprotkb:jhp_0955(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325465|imex:IM-22256-487 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08171(transcript)|ensemblbacteria:HP_1129(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0022857"(transmembrane transporter activity)|interpro:IPR003400(Biopolymer transport protein ExbD/TolR)|mint:O25754|refseq:NP_207920.1|refseq:WP_001105106.1|dip:DIP-3550N|uniprotkb:O25754(identity) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD06537(transcript)|ensemblbacteria:jhp_0955(gene)|uniprotkb:Q9ZKI0(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zA9fWUgDJHLw2n/n3gdqcOyvR/I85962 rogid:qVtLDPLjKL1Da6oe/FPOLK7FogE85963 intact-crc:F63A24848F93BEFD|rigid:Lj3Ms3e37mpdHkA0ET53kf8gAcU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25754 uniprotkb:O25754 intact:EBI-7653735|ensemblbacteria:AAD08171|intact:MINT-164494 intact:EBI-7653735|ensemblbacteria:AAD08171|intact:MINT-164494 psi-mi:exdl1_helpy(display_long)|uniprotkb:HP_1129(locus name) psi-mi:exdl1_helpy(display_long)|uniprotkb:HP_1129(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325447|imex:IM-22256-486 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08171(transcript)|ensemblbacteria:HP_1129(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0022857"(transmembrane transporter activity)|interpro:IPR003400(Biopolymer transport protein ExbD/TolR)|mint:O25754|refseq:NP_207920.1|refseq:WP_001105106.1|dip:DIP-3550N|uniprotkb:O25754(identity) ensemblbacteria:AAD08171(transcript)|ensemblbacteria:HP_1129(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0022857"(transmembrane transporter activity)|interpro:IPR003400(Biopolymer transport protein ExbD/TolR)|mint:O25754|refseq:NP_207920.1|refseq:WP_001105106.1|dip:DIP-3550N|uniprotkb:O25754(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zA9fWUgDJHLw2n/n3gdqcOyvR/I85962 rogid:zA9fWUgDJHLw2n/n3gdqcOyvR/I85962 intact-crc:D42F44572B046B22|rigid:XnxwKq1hXfJZ6EWgKapdFUswZrk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25768 uniprotkb:O25983 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325573|imex:IM-22256-493 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:02AF26E0F8AFB6A5|rigid:f2sjo7jBCURucLUWQ4jGw/YgXMM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25768 uniprotkb:O25895 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325555|imex:IM-22256-492 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:3CCC470FA14B2B2A|rigid:sxzHl8wJeaYbXMo9sm9KNOZ/BY8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25768 uniprotkb:O25764 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-7609534|intact:MINT-163054|ensemblbacteria:AAD08200 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:o25764_helpy(display_long)|uniprotkb:HP_1145(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325537|imex:IM-22256-491 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) mint:O25764|ensemblbacteria:AAD08200(transcript)|ensemblbacteria:HP_1145(gene)|interpro:IPR021139|dip:DIP-3653N|uniprotkb:O25764(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:6UHcZtDYuEpykgLcL4zPBB85+XI85962 intact-crc:A7588FB9406FD369|rigid:lyl/IeKxw9547XI2x2GF1hcQ3p8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25310 uniprotkb:O25768 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325519|imex:IM-22256-490 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 intact-crc:0C304BD17FB97B56|rigid:6YzeZeRozVFaqq75Pw4Akp5WfR4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25778 uniprotkb:O26071 intact:EBI-9268026|ensemblbacteria:AAD08214 intact:EBI-9261904|ensemblbacteria:AAD08590 psi-mi:o25778_helpy(display_long)|uniprotkb:HP_1163(locus name) psi-mi:o26071_helpy(display_long)|uniprotkb:HP_1546(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325627|imex:IM-22256-496 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001090949.1|interpro:IPR004714(Cytochrome oxidase maturation protein cbb3-type)|refseq:NP_207954.1|ensemblbacteria:AAD08214(transcript)|ensemblbacteria:HP_1163(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25778(identity) refseq:WP_001202125.1|interpro:IPR007485(Rare lipoprotein B)|refseq:NP_208337.1|ensemblbacteria:AAD08590(transcript)|ensemblbacteria:HP_1546(gene)|go:"GO:0019867"(outer membrane)|go:"GO:0043165"(Gram-negative-bacterium-type cell outer membrane assembly)|uniprotkb:O26071(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rgTybntLaZuKr9HDUGurlrFZ2vI85962 rogid:G4XOzucE1Mq9a/cBvsA+kr5IyHk85962 intact-crc:07D1264133B54860|rigid:lcr0bdRVl9euu+2Jp3D20RL6yxE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55984 uniprotkb:O25776 intact:EBI-9260982|ensemblbacteria:AAD08263 intact:EBI-9268007|ensemblbacteria:AAD08207 psi-mi:ispt_helpy(display_long)|uniprotkb:uppS(gene name)|psi-mi:uppS(display_short)|uniprotkb:HP_1221(locus name) psi-mi:flav_helpy(display_long)|uniprotkb:fldA(gene name)|psi-mi:fldA(display_short)|uniprotkb:HP_1161(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325609|imex:IM-22256-495 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000370674.1|interpro:IPR001441(Di-trans-poly-cis-decaprenylcistransferase)|interpro:IPR018520|rcsb pdb:2D2R|rcsb pdb:2DTN|refseq:NP_208013.1|interpro:IPR036424|ensemblbacteria:AAD08263(transcript)|ensemblbacteria:HP_1221(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0002094"(polyprenyltransferase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008834"(di-trans,poly-cis-decaprenylcistransferase activity)|go:"GO:0016094"(polyprenol biosynthetic process)|go:"GO:0030145"(manganese ion binding)|uniprotkb:P55984(identity) refseq:WP_000516078.1|interpro:IPR008254(Flavodoxin/nitric oxide synthase)|interpro:IPR010086(Flavodoxin, long chain)|rcsb pdb:2BMV|rcsb pdb:2W5U|refseq:NP_207952.1|interpro:IPR029039|ensemblbacteria:AAD08207(transcript)|ensemblbacteria:HP_1161(gene)|go:"GO:0010181"(FMN binding)|uniprotkb:O25776(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6ysxKJJK+I3uVC22ihjbhYZ6yew85962 rogid:zS16B4ROzZNwGFR5FODdcyMO1ys85962 intact-crc:59331A1E70E3D256|rigid:ufFY1uCClgBTJjCqlTNicmAYheU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25768 uniprotkb:O25990 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325591|imex:IM-22256-494 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:5526EB99E8D5C55B|rigid:XVAZsLE6lBVgfoK6QgSsSdFXSPk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25990 uniprotkb:O25788 intact:EBI-528082|ensemblbacteria:AAD08496 intact:EBI-9268062|ensemblbacteria:AAD08219 psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:glup_helpy(display_long)|uniprotkb:gluP(gene name)|psi-mi:gluP(display_short)|uniprotkb:HP_1174(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325663|imex:IM-22256-498 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) refseq:WP_001174195.1|interpro:IPR036259|interpro:IPR005964(Bacterial glucose/galactose transporter)|interpro:IPR011701(Major facilitator superfamily MFS-1)|refseq:NP_207965.1|ensemblbacteria:AAD08219(transcript)|ensemblbacteria:HP_1174(gene)|go:"GO:0005354"(galactose transmembrane transporter activity)|go:"GO:0005355"(glucose transmembrane transporter activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25788(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 rogid:eN4Y1W9tsOHtqx6MpBE5vL0yU0Y85962 intact-crc:E5F30C0F3B125388|rigid:gk/Ry7I0xBJ96JOcSG/EwTicyCc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZJ23 uniprotkb:O25778 intact:EBI-9268044|ensemblbacteria:AAD07071 intact:EBI-9268026|ensemblbacteria:AAD08214 psi-mi:q9zj23_helpj(display_long)|uniprotkb:jhp_1495(locus name) psi-mi:o25778_helpy(display_long)|uniprotkb:HP_1163(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325645|imex:IM-22256-497 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07071(transcript)|ensemblbacteria:jhp_1495(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:Q9ZJ23(identity) refseq:WP_001090949.1|interpro:IPR004714(Cytochrome oxidase maturation protein cbb3-type)|refseq:NP_207954.1|ensemblbacteria:AAD08214(transcript)|ensemblbacteria:HP_1163(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25778(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:pnrvQQo8/sdp6ESgdMffqomLvTg85963 rogid:rgTybntLaZuKr9HDUGurlrFZ2vI85962 intact-crc:92C362787C19BB5E|rigid:OKbB76P1vSTLVbAtlkz9C+lOATw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25310 uniprotkb:O25805 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-9268129|ensemblbacteria:AAD08244 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:o25805_helpy(display_long)|uniprotkb:HP_1194(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325735|imex:IM-22256-502 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) ensemblbacteria:AAD08244(transcript)|ensemblbacteria:HP_1194(gene)|uniprotkb:O25805(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:LYpn+S16rlrjqSTwSHd4o28xxNo85962 intact-crc:58F2CB001BE70AA1|rigid:p9WtN81hfjVdrzMChZ/mFmzNrIM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25803 uniprotkb:O26083 intact:EBI-9268099|ensemblbacteria:AAD08238 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:o25803_helpy(display_long)|uniprotkb:HP_1192(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325717|imex:IM-22256-501 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000744184.1|refseq:NP_207983.1|ensemblbacteria:AAD08238(transcript)|ensemblbacteria:HP_1192(gene)|uniprotkb:O25803(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:suvoTQcf/4hQW2uelCP5FsA+HRk85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:4AD91F1CD55D80EF|rigid:CJMU7qrfFfOqJjfHMZVSJ/Adx1s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25743 uniprotkb:O25803 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 intact:EBI-9268099|ensemblbacteria:AAD08238 psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:o25803_helpy(display_long)|uniprotkb:HP_1192(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325699|imex:IM-22256-500 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) refseq:WP_000744184.1|refseq:NP_207983.1|ensemblbacteria:AAD08238(transcript)|ensemblbacteria:HP_1192(gene)|uniprotkb:O25803(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 rogid:suvoTQcf/4hQW2uelCP5FsA+HRk85962 intact-crc:467230E3A68961F8|rigid:ZBJ4Ppmoa8xBq4INHcfdVYcS33s false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25794 uniprotkb:O25794 intact:EBI-7681998|ensemblbacteria:AAD08228|intact:MINT-159898 intact:EBI-7681998|ensemblbacteria:AAD08228|intact:MINT-159898 psi-mi:o25794_helpy(display_long)|uniprotkb:HP_1182(locus name) psi-mi:o25794_helpy(display_long)|uniprotkb:HP_1182(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325681|imex:IM-22256-499 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08228(transcript)|ensemblbacteria:HP_1182(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0016740"(transferase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR011063(PP-loop)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR035107|mint:O25794|refseq:NP_207973.1|refseq:WP_000312855.1|dip:DIP-3715N|uniprotkb:O25794(identity) ensemblbacteria:AAD08228(transcript)|ensemblbacteria:HP_1182(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0016740"(transferase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR011063(PP-loop)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR035107|mint:O25794|refseq:NP_207973.1|refseq:WP_000312855.1|dip:DIP-3715N|uniprotkb:O25794(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ar3YGnJ9SJ0IDr0cVbHHr0dg1t885962 rogid:ar3YGnJ9SJ0IDr0cVbHHr0dg1t885962 intact-crc:7403E036AE17C436|rigid:33LleZP1CHCvf2vFf57wQIi7m2I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25808 uniprotkb:O25983 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325825|imex:IM-22256-507 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:558DE8A98AC76FD7|rigid:o2PVEW+6mr+zPyoOdVdUG18OFts false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25808 uniprotkb:O25790 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-9261675|ensemblbacteria:AAD08226 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325807|imex:IM-22256-506 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 intact-crc:70D6FAA2CD346591|rigid:zhW5UV0Lg8d8JEHGfS9y9Ss56xA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25808 uniprotkb:O25186 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325789|imex:IM-22256-505 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 intact-crc:88992093FE8DF4A2|rigid:M4pl3GrtDKXAnDSOg53HYlWESMI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O25808 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325771|imex:IM-22256-504 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 intact-crc:C125BC3BC0F1EC9C|rigid:DyOPscWgLdsAjHzXJTSYAu+opd0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25692 uniprotkb:O25805 intact:EBI-7574216|intact:MINT-182315|ensemblbacteria:AAD08098 intact:EBI-9268129|ensemblbacteria:AAD08244 psi-mi:lpxc_helpy(display_long)|uniprotkb:lpxC(gene name)|psi-mi:lpxC(display_short)|uniprotkb:UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase(gene name synonym)|uniprotkb:HP_1052(locus name) psi-mi:o25805_helpy(display_long)|uniprotkb:HP_1194(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325753|imex:IM-22256-503 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25692|refseq:WP_000815275.1|refseq:NP_207843.1|ensemblbacteria:AAD08098(transcript)|ensemblbacteria:HP_1052(gene)|go:"GO:0008759"(UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0103117"(UDP-3-O-acyl-N-acetylglucosamine deacetylase activity)|interpro:IPR004463(UDP-3-O-acyl N-acetylglucosamine deacetylase)|interpro:IPR011334(UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal)|interpro:IPR015870(UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal)|interpro:IPR020568|dip:DIP-3457N|uniprotkb:O25692(identity) ensemblbacteria:AAD08244(transcript)|ensemblbacteria:HP_1194(gene)|uniprotkb:O25805(identity) psi-mi:"MI:0469"(intact) function:Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Qtz7RUkn8lsaMXT9vhnsK4r3OIk85962 rogid:LYpn+S16rlrjqSTwSHd4o28xxNo85962 intact-crc:EDB0583C0F2646B5|rigid:rU3sEkYpsp3rJSsrg5AD2qhJo9k false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25808 uniprotkb:Q9ZN32 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325897|imex:IM-22256-511 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:6D9FF3D254EEE17E|rigid:cU3v7lj117WieoZxI6NdjFG3nJQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25808 uniprotkb:Q9ZL79 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-9262981|ensemblbacteria:AAD06276 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:q9zl79_helpj(display_long)|uniprotkb:jhp_0701(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325879|imex:IM-22256-510 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) interpro:IPR005358(Protein of unknown function UPF0153)|ensemblbacteria:AAD06276(transcript)|ensemblbacteria:jhp_0701(gene)|uniprotkb:Q9ZL79(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:lF/xSeC5ME9IUHouS6yOLLg1grE85963 intact-crc:ADA8E43F2B61DA2E|rigid:FJxGW1yYYb3T2pIOe7dgR1M+Upw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25808 uniprotkb:Q9ZJN3 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-9264413|ensemblbacteria:AAD06844 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:q9zjn3_helpj(display_long)|uniprotkb:JHP1272(gene name)|psi-mi:JHP1272(display_short)|uniprotkb:jhp_1272(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325861|imex:IM-22256-509 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) interpro:IPR003356(N-6 DNA methylase)|interpro:IPR029063|interpro:IPR041635|ensemblbacteria:AAD06844(transcript)|ensemblbacteria:jhp_1272(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZJN3(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:2Btvw0CrXOSJ1SBiIVCTxact1hc85963 intact-crc:40F413477B389401|rigid:8jg8Yi6KiFTwILguRZZD6tGafBo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25808 uniprotkb:Q9ZJ53 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-9268222|ensemblbacteria:AAD07037 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:q9zj53_helpj(display_long)|uniprotkb:jhp_1462(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325843|imex:IM-22256-508 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) ensemblbacteria:AAD07037(transcript)|ensemblbacteria:jhp_1462(gene)|uniprotkb:Q9ZJ53(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:JBjQj4C++QkbgdQkoPvHTFj9R+s85963 intact-crc:5B571C814B4E9BBD|rigid:hTDjuNDs5hSFsrYxsLhQlbMBKcw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25817 uniprotkb:O25193 intact:EBI-7703015|ensemblbacteria:AAD08261|intact:MINT-179697 intact:EBI-9268368|ensemblbacteria:AAD07521 psi-mi:pur2_helpy(display_long)|uniprotkb:HP_1218(locus name)|uniprotkb:purD(gene name)|psi-mi:purD(display_short)|uniprotkb:GARS(gene name synonym)|uniprotkb:Glycinamide ribonucleotide synthetase(gene name synonym)|uniprotkb:Phosphoribosylglycinamide synthetase(gene name synonym) psi-mi:o25193_helpy(display_long)|uniprotkb:HP_0445(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325987|imex:IM-22256-516 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25817|ensemblbacteria:AAD08261(transcript)|ensemblbacteria:HP_1218(gene)|go:"GO:0004637"(phosphoribosylamine-glycine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0009113"(purine nucleobase biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000115(Phosphoribosylglycinamide synthetase)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|interpro:IPR020560|interpro:IPR020561|interpro:IPR020562|interpro:IPR037123|refseq:WP_000654350.1|refseq:NP_208010.1|dip:DIP-3667N|uniprotkb:O25817(identity) ensemblbacteria:AAD07521(transcript)|ensemblbacteria:HP_0445(gene)|uniprotkb:O25193(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+K5vLveEXHG7fjwhjmtmEB8bdzQ85962 rogid:MA06LY47GdRMwnyLuB4R6iCKeyA85962 intact-crc:1A6EF79617936A6D|rigid:sj0Ltn9vIWwu0JDgWreVqm0KsR0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25488 uniprotkb:O25814 intact:EBI-9263014|ensemblbacteria:AAD07855 intact:EBI-9268353|ensemblbacteria:AAD08265 psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:o25814_helpy(display_long)|uniprotkb:HP_1215(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325969|imex:IM-22256-515 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) ensemblbacteria:AAD08265(transcript)|ensemblbacteria:HP_1215(gene)|uniprotkb:O25814(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 rogid:A9Y6QiulV5jgwSB961twhky5s6s85962 intact-crc:F9C4F17F6304576B|rigid:4xvp2p7Jp25nRg4vAJCfyX14xTA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P65185 uniprotkb:O25813 intact:EBI-7609604|uniprotkb:O25160|intact:MINT-4070280|ensemblbacteria:AAD07469 intact:EBI-9264319|ensemblbacteria:AAD08259 psi-mi:isph_helpy(display_long)|uniprotkb:ispH(gene name)|psi-mi:ispH(display_short)|uniprotkb:lytB(gene name synonym)|uniprotkb:HP_0400(locus name) psi-mi:o25813_helpy(display_long)|uniprotkb:HP_1214(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325951|imex:IM-22256-514 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P65185|refseq:WP_000403575.1|interpro:IPR003451(LytB protein)|refseq:NP_207198.1|ensemblbacteria:AAD07469(transcript)|ensemblbacteria:HP_0400(gene)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050992"(dimethylallyl diphosphate biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0051745"(4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity)|uniprotkb:P65185(identity) refseq:WP_001225412.1|refseq:NP_208006.1|interpro:IPR029057|ensemblbacteria:AAD08259(transcript)|ensemblbacteria:HP_1214(gene)|uniprotkb:O25813(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nv4H+R87/ltx+Gv6ixV28j8Cw6Q85962 rogid:iqHRK4pl63bBSHNb2A56ofp3Wu885962 intact-crc:A00413349E13FE89|rigid:9Xqnw4b/PpEXXcxAQy5ecg7JkvY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56132 uniprotkb:O25813 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-9264319|ensemblbacteria:AAD08259 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:o25813_helpy(display_long)|uniprotkb:HP_1214(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325933|imex:IM-22256-513 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) refseq:WP_001225412.1|refseq:NP_208006.1|interpro:IPR029057|ensemblbacteria:AAD08259(transcript)|ensemblbacteria:HP_1214(gene)|uniprotkb:O25813(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:iqHRK4pl63bBSHNb2A56ofp3Wu885962 intact-crc:D1148C166D674B23|rigid:DIfty91m6IGLTGdPm1Db0bBb0ew false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94845 uniprotkb:O25811 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-9268305|ensemblbacteria:AAD08267 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:o25811_helpy(display_long)|uniprotkb:HP_1211(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9325915|imex:IM-22256-512 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) ensemblbacteria:AAD08267(transcript)|ensemblbacteria:HP_1211(gene)|uniprotkb:O25811(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:KdbEcOsG3546IArBWQ4zFWOPXaM85962 intact-crc:5225346490F7659D|rigid:4rYi2uccuewIRQ1bZ/Kgdp/1zw8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25822 uniprotkb:O25983 intact:EBI-7511185|intact:MINT-160212|ensemblbacteria:AAD08269 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25822_helpy(display_long)|uniprotkb:HP_1224(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326059|imex:IM-22256-520 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25822|refseq:WP_001862414.1|refseq:NP_208016.1|ensemblbacteria:AAD08269(transcript)|ensemblbacteria:HP_1224(gene)|go:"GO:0004852"(uroporphyrinogen-III synthase activity)|go:"GO:0006780"(uroporphyrinogen III biosynthetic process)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|interpro:IPR003754(Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)|interpro:IPR036108|interpro:IPR039793|rcsb pdb:3P9Z|dip:DIP-3674N|uniprotkb:O25822(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:71mQk6x9P1J618vGRsrznm3y90g85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:A56F3DC7897201D4|rigid:hgi2oE8D5jmEhnomn0amFynl8fc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25820 uniprotkb:O06914 intact:EBI-7514432|intact:MINT-186724|ensemblbacteria:AAD08264 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25820_helpy(display_long)|uniprotkb:HP_1222(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326041|imex:IM-22256-519 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001261912.1|mint:O25820|refseq:NP_208014.1|ensemblbacteria:AAD08264(transcript)|ensemblbacteria:HP_1222(gene)|go:"GO:0004458"("D-lactate dehydrogenase (cytochrome) activity")|go:"GO:0008720"(D-lactate dehydrogenase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051536"(iron-sulfur cluster binding)|go:"GO:0071949"(FAD binding)|go:"GO:1903457"(lactate catabolic process)|interpro:IPR004113(FAD-linked oxidase, C-terminal)|interpro:IPR006094(FAD linked oxidase, N-terminal)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR016164(FAD-linked oxidase-like, C-terminal)|interpro:IPR016166(FAD-binding, type 2)|interpro:IPR016167(FAD-binding, type 2, subdomain 1)|interpro:IPR016171(Vanillyl-alcohol oxidase, C-terminal subdomain 2)|interpro:IPR017896|interpro:IPR017900|interpro:IPR036318|dip:DIP-3097N|uniprotkb:O25820(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gg3KcfMhSF9I/kvoCtC6JFnnYPs85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:E7EC3D1BF3520B36|rigid:1OKVgwGtVLliiS5SzFqHlOqIJ2g false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25818 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9268401|ensemblbacteria:AAD08268 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o25818_helpy(display_long)|uniprotkb:HP_1219(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326023|imex:IM-22256-518 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:YP_009112937.1|refseq:WP_010875608.1|ensemblbacteria:AAD08268(transcript)|ensemblbacteria:HP_1219(gene)|uniprotkb:O25818(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:th01geA6lbGmmPlX9N2ApKDK7Bg85962 intact-crc:71719F85C9FB88BC|rigid:vP7ylcU1pTCzwiweUTFpAG673SA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25817 uniprotkb:Q9Z3A7 intact:EBI-7703015|ensemblbacteria:AAD08261|intact:MINT-179697 intact:EBI-9264847|ensemblbacteria:AAD06538|ensemblbacteria:AAD06883 psi-mi:pur2_helpy(display_long)|uniprotkb:HP_1218(locus name)|uniprotkb:purD(gene name)|psi-mi:purD(display_short)|uniprotkb:GARS(gene name synonym)|uniprotkb:Glycinamide ribonucleotide synthetase(gene name synonym)|uniprotkb:Phosphoribosylglycinamide synthetase(gene name synonym) psi-mi:q9z3a7_helpj(display_long)|uniprotkb:jhp_0958(locus name)|uniprotkb:jhp_1306(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326005|imex:IM-22256-517 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25817|ensemblbacteria:AAD08261(transcript)|ensemblbacteria:HP_1218(gene)|go:"GO:0004637"(phosphoribosylamine-glycine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0009113"(purine nucleobase biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000115(Phosphoribosylglycinamide synthetase)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|interpro:IPR020560|interpro:IPR020561|interpro:IPR020562|interpro:IPR037123|refseq:WP_000654350.1|refseq:NP_208010.1|dip:DIP-3667N|uniprotkb:O25817(identity) ensemblbacteria:AAD06538(transcript)|ensemblbacteria:AAD06883(transcript)|ensemblbacteria:jhp_0958(gene)|ensemblbacteria:jhp_1306(gene)|uniprotkb:Q9Z3A7(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+K5vLveEXHG7fjwhjmtmEB8bdzQ85962 rogid:UZGi2Zy3UKsAkuRx4SF2j3p2eak85963 intact-crc:1AC661811B044F78|rigid:0bKWSh7eYIG/EheXDWWouytValo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25822 uniprotkb:Q9ZN32 intact:EBI-7511185|intact:MINT-160212|ensemblbacteria:AAD08269 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25822_helpy(display_long)|uniprotkb:HP_1224(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326077|imex:IM-22256-521 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25822|refseq:WP_001862414.1|refseq:NP_208016.1|ensemblbacteria:AAD08269(transcript)|ensemblbacteria:HP_1224(gene)|go:"GO:0004852"(uroporphyrinogen-III synthase activity)|go:"GO:0006780"(uroporphyrinogen III biosynthetic process)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|interpro:IPR003754(Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)|interpro:IPR036108|interpro:IPR039793|rcsb pdb:3P9Z|dip:DIP-3674N|uniprotkb:O25822(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:71mQk6x9P1J618vGRsrznm3y90g85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:9D7FF6BC575B8F7D|rigid:MikG1v5QkqdKOJGjcVCY9YPXrl8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25678 uniprotkb:O25837 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9268501|ensemblbacteria:AAD08289 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o25837_helpy(display_long)|uniprotkb:HP_1239(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326131|imex:IM-22256-524 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) ensemblbacteria:AAD08289(transcript)|ensemblbacteria:HP_1239(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25837(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:alICJVowC7TyiHFz6AOexzZEuPU85962 intact-crc:C2C22243DB4CF299|rigid:s+Umr3Vx8ieLBaT+UGO2otdhVRQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94845 uniprotkb:O25826 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-9268464|ensemblbacteria:AAD08273 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:rpph_helpy(display_long)|uniprotkb:rppH(gene name)|psi-mi:rppH(display_short)|uniprotkb:"(Di)nucleoside polyphosphate hydrolase"(gene name synonym)|uniprotkb:nudH(gene name synonym)|uniprotkb:HP_1228(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326113|imex:IM-22256-523 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) refseq:WP_000902563.1|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR015797(NUDIX)|interpro:IPR020084|interpro:IPR020476|interpro:IPR022927|refseq:NP_208020.1|ensemblbacteria:AAD08273(transcript)|ensemblbacteria:HP_1228(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0034353"(RNA pyrophosphohydrolase activity)|uniprotkb:O25826(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:ew3Vtvdj6VBre4ZFuEldILkIPIk85962 intact-crc:138645C92086C82D|rigid:z9rl2nNQJjmnwwFKkB8WhqjXoEY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O06914 uniprotkb:O25826 intact:EBI-9261354|ensemblbacteria:AAD07258 intact:EBI-9268464|ensemblbacteria:AAD08273 psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:rpph_helpy(display_long)|uniprotkb:rppH(gene name)|psi-mi:rppH(display_short)|uniprotkb:"(Di)nucleoside polyphosphate hydrolase"(gene name synonym)|uniprotkb:nudH(gene name synonym)|uniprotkb:HP_1228(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326095|imex:IM-22256-522 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) refseq:WP_000902563.1|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR015797(NUDIX)|interpro:IPR020084|interpro:IPR020476|interpro:IPR022927|refseq:NP_208020.1|ensemblbacteria:AAD08273(transcript)|ensemblbacteria:HP_1228(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0034353"(RNA pyrophosphohydrolase activity)|uniprotkb:O25826(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 rogid:ew3Vtvdj6VBre4ZFuEldILkIPIk85962 intact-crc:D56B857E0F0D262E|rigid:HEQeyz/0fbwM5QUvvHGaZrLQkXc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25839 uniprotkb:Q9ZN05 intact:EBI-9268516|ensemblbacteria:AAD08286 intact:EBI-9264598|ensemblbacteria:AAD05639 psi-mi:o25839_helpy(display_long)|uniprotkb:HP_1242(locus name) psi-mi:q9zn05_helpj(display_long)|uniprotkb:jhp_0055(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326167|imex:IM-22256-526 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038444|refseq:WP_000468330.1|interpro:IPR007420(Protein of unknown function DUF465)|rcsb pdb:1ZHC|refseq:NP_208034.1|ensemblbacteria:AAD08286(transcript)|ensemblbacteria:HP_1242(gene)|uniprotkb:O25839(identity) ensemblbacteria:AAD05639(transcript)|ensemblbacteria:jhp_0055(gene)|uniprotkb:Q9ZN05(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:C3dVPbyUUCX/0Acy4tQl2G6SkC885962 rogid:q1gOPf6G99EirqvWeAt1bWdK0Mc85963 intact-crc:81F46A8F0A539B4E|rigid:JdS9tSQXRCC1dcPimGeQsWb+v4g false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56120 uniprotkb:O25839 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9268516|ensemblbacteria:AAD08286 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:o25839_helpy(display_long)|uniprotkb:HP_1242(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326149|imex:IM-22256-525 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) interpro:IPR038444|refseq:WP_000468330.1|interpro:IPR007420(Protein of unknown function DUF465)|rcsb pdb:1ZHC|refseq:NP_208034.1|ensemblbacteria:AAD08286(transcript)|ensemblbacteria:HP_1242(gene)|uniprotkb:O25839(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:C3dVPbyUUCX/0Acy4tQl2G6SkC885962 intact-crc:EEBC0FEF2B4D24A5|rigid:Aed0KQKRkJtYRxSI4P+MPCgu3xQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:O25214 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326221|imex:IM-22256-529 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 intact-crc:83203DF3FF9E8963|rigid:w1coROhZ5aYvo+IGPQh2USU4Ays false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:O25008 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7607228|intact:MINT-177413|ensemblbacteria:AAD07288 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:iscs_helpy(display_long)|uniprotkb:iscS(gene name)|psi-mi:iscS(display_short)|uniprotkb:HP_0220(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326203|imex:IM-22256-528 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) refseq:WP_000941691.1|mint:O25008|refseq:NP_207018.1|ensemblbacteria:AAD07288(transcript)|ensemblbacteria:HP_0220(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006534"(cysteine metabolic process)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0044571"([2Fe-2S] cluster assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR010240(Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017773(Cysteine desulphurase, NifS, proteobacteria)|rcsb pdb:5WT2|rcsb pdb:5WT4|rcsb pdb:5WT5|rcsb pdb:5WT6|rcsb pdb:6KG0|rcsb pdb:6KG1|rcsb pdb:7CET|rcsb pdb:7CEU|dip:DIP-3630N|uniprotkb:O25008(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint|function:Catalyzes the removal of elemental sulfur from cysteine to produce alanine figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:YiXCohNQqJR9uWzOaw8ACg2+SmE85962 intact-crc:958896B25D84A8C1|rigid:faE7CPiAlKTRcmqLKV2juVpOtM0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25848 uniprotkb:O25990 intact:EBI-9268549|ensemblbacteria:AAD08304 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o25848_helpy(display_long)|uniprotkb:HP_1258(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326185|imex:IM-22256-527 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000201774.1|interpro:IPR010432(RDD)|refseq:NP_208050.1|ensemblbacteria:AAD08304(transcript)|ensemblbacteria:HP_1258(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25848(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Ad/fsGi7RkopFtJpYKJSdUEejDw85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:793CBCDFA0E41313|rigid:Fe7QWXJzETTs8GILyIaAG3ok9VQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25692 uniprotkb:O25855 intact:EBI-7574216|intact:MINT-182315|ensemblbacteria:AAD08098 intact:EBI-9268630|ensemblbacteria:AAD08320 psi-mi:lpxc_helpy(display_long)|uniprotkb:lpxC(gene name)|psi-mi:lpxC(display_short)|uniprotkb:UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase(gene name synonym)|uniprotkb:HP_1052(locus name) psi-mi:o25855_helpy(display_long)|uniprotkb:HP_1265(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326275|imex:IM-22256-532 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25692|refseq:WP_000815275.1|refseq:NP_207843.1|ensemblbacteria:AAD08098(transcript)|ensemblbacteria:HP_1052(gene)|go:"GO:0008759"(UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0103117"(UDP-3-O-acyl-N-acetylglucosamine deacetylase activity)|interpro:IPR004463(UDP-3-O-acyl N-acetylglucosamine deacetylase)|interpro:IPR011334(UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal)|interpro:IPR015870(UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal)|interpro:IPR020568|dip:DIP-3457N|uniprotkb:O25692(identity) refseq:WP_000012749.1|refseq:NP_208057.1|ensemblbacteria:AAD08320(transcript)|ensemblbacteria:HP_1265(gene)|uniprotkb:O25855(identity) psi-mi:"MI:0469"(intact) function:Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Qtz7RUkn8lsaMXT9vhnsK4r3OIk85962 rogid:cNjncYKv1XvTUFKjWsy+/1wu20w85962 intact-crc:285B9C585824360E|rigid:Wxhd7SxKg/AUF6Qxn60ymY7urpQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:O25933 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326257|imex:IM-22256-531 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 intact-crc:501A878FA0C0CEB8|rigid:tKEjKT5KDX1ue87F8/EnmjVSFww false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O25852 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326239|imex:IM-22256-530 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 intact-crc:F121E8F695C82C09|rigid:mi2Xap3A6OCo8UrSXJ0cW5NdmUE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25867 uniprotkb:O25038 intact:EBI-7582078|intact:MINT-181675|ensemblbacteria:AAD08324 intact:EBI-9261404|ensemblbacteria:AAD07325 psi-mi:trpc_helpy(display_long)|uniprotkb:HP_1279(locus name)|uniprotkb:trpC(gene name)|psi-mi:trpC(display_short) psi-mi:o25038_helpy(display_long)|uniprotkb:HP_0257(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326347|imex:IM-22256-536 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25867|interpro:IPR001240("N-(5'phosphoribosyl)anthranilate isomerase (PRAI)")|interpro:IPR001468(Indole-3-glycerol phosphate synthase, central region)|refseq:WP_001141446.1|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|refseq:NP_208071.1|interpro:IPR013785(Aldolase-type TIM barrel)|ensemblbacteria:AAD08324(transcript)|ensemblbacteria:HP_1279(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|go:"GO:0004640"(phosphoribosylanthranilate isomerase activity)|uniprotkb:O25867(identity) refseq:WP_001226637.1|interpro:IPR006668(MgtE intracellular region)|refseq:NP_207055.1|interpro:IPR038076|ensemblbacteria:AAD07325(transcript)|ensemblbacteria:HP_0257(gene)|uniprotkb:O25038(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Bifunctional enzyme that catalyzes two sequential steps of tryptophan biosynthetic pathway. The first reaction is catalyzed by the isomerase, coded by the trpF domain; the second reaction is catalyzed by the synthase, coded by the trpC domain - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L3FSpQXwa4hBEKrEzkLJ7Mmvhf085962 rogid:uVXjhpyFxXT8EXwW+LC/asYO5E885962 intact-crc:96450BFD3EB0F890|rigid:DI42/a1nXz3iKJnS0CmlULBVK3g false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25864 uniprotkb:O26083 intact:EBI-7494668|intact:MINT-172873|ensemblbacteria:AAD08318 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:o25864_helpy(display_long)|uniprotkb:HP_1274(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326329|imex:IM-22256-535 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25864|refseq:NP_208066.1|refseq:WP_000266337.1|ensemblbacteria:AAD08318(transcript)|ensemblbacteria:HP_1274(gene)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR018704|dip:DIP-3066N|uniprotkb:O25864(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oaPUHn/pgEu8nMQ0gtVo/k8J+Xo85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:B68E01FD91E361AB|rigid:/ywRG3Q6VGQ/uJitzya1ESji+wM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25864 uniprotkb:O25743 intact:EBI-7494668|intact:MINT-172873|ensemblbacteria:AAD08318 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 psi-mi:o25864_helpy(display_long)|uniprotkb:HP_1274(locus name) psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326311|imex:IM-22256-534 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25864|refseq:NP_208066.1|refseq:WP_000266337.1|ensemblbacteria:AAD08318(transcript)|ensemblbacteria:HP_1274(gene)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR018704|dip:DIP-3066N|uniprotkb:O25864(identity) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oaPUHn/pgEu8nMQ0gtVo/k8J+Xo85962 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 intact-crc:FA8494D06ACF61B6|rigid:GSzwV4OzYAzrVUOlYsci4kSwndE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZKK8 uniprotkb:O25858 intact:EBI-9264174|ensemblbacteria:AAD06505 intact:EBI-9264668|ensemblbacteria:AAD08312 psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:nuoi_helpy(display_long)|uniprotkb:nuoI(gene name)|psi-mi:nuoI(display_short)|uniprotkb:NADH dehydrogenase I subunit I(gene name synonym)|uniprotkb:NDH-1 subunit I(gene name synonym)|uniprotkb:HP_1268(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326293|imex:IM-22256-533 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) refseq:WP_001118555.1|interpro:IPR010226(NADH-quinone oxidoreductase, chain I)|interpro:IPR017896|interpro:IPR017900|refseq:NP_208060.1|ensemblbacteria:AAD08312(transcript)|ensemblbacteria:HP_1268(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009060"(aerobic respiration)|go:"GO:0045272"(plasma membrane respiratory chain complex I)|go:"GO:0048038"(quinone binding)|go:"GO:0050136"("NADH dehydrogenase (quinone) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|uniprotkb:O25858(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 rogid:NBTVgKr9aDepBiFHUZ3iO6zG25085962 intact-crc:B58E23EEC21FF8F8|rigid:ft+EMURtEJo71ZayvCJo2U6hxbw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25878 uniprotkb:O25878 intact:EBI-7617898|intact:MINT-174132|ensemblbacteria:AAD08334 intact:EBI-7617898|intact:MINT-174132|ensemblbacteria:AAD08334 psi-mi:o25878_helpy(display_long)|uniprotkb:HP_1291(locus name) psi-mi:o25878_helpy(display_long)|uniprotkb:HP_1291(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326401|imex:IM-22256-539 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001149282.1|mint:O25878|refseq:NP_208083.1|ensemblbacteria:AAD08334(transcript)|ensemblbacteria:HP_1291(gene)|go:"GO:0004788"(thiamine diphosphokinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006772"(thiamine metabolic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:0016301"(kinase activity)|interpro:IPR006282(Thiamin pyrophosphokinase)|interpro:IPR007371(Thiamin pyrophosphokinase, catalytic region)|interpro:IPR036759|dip:DIP-3699N|uniprotkb:O25878(identity) refseq:WP_001149282.1|mint:O25878|refseq:NP_208083.1|ensemblbacteria:AAD08334(transcript)|ensemblbacteria:HP_1291(gene)|go:"GO:0004788"(thiamine diphosphokinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006772"(thiamine metabolic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:0016301"(kinase activity)|interpro:IPR006282(Thiamin pyrophosphokinase)|interpro:IPR007371(Thiamin pyrophosphokinase, catalytic region)|interpro:IPR036759|dip:DIP-3699N|uniprotkb:O25878(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+gZVP3dg7r1utx+xGirwuV54O2o85962 rogid:+gZVP3dg7r1utx+xGirwuV54O2o85962 intact-crc:A6BECC4F00C865C4|rigid:hbcbhffkpeo/8TsA34tGSDF3yvQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25877 uniprotkb:O25990 intact:EBI-7726918|ensemblbacteria:AAD08333|intact:MINT-176482 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o25877_helpy(display_long)|uniprotkb:HP_1290(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326383|imex:IM-22256-538 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08333(transcript)|ensemblbacteria:HP_1290(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0034257"(nicotinamide riboside transmembrane transporter activity)|interpro:IPR006419(Nicotinamide mononucleotide transporter PnuC)|mint:O25877|refseq:WP_000909307.1|refseq:NP_208082.1|dip:DIP-3689N|uniprotkb:O25877(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VtIn+wCDmTZFMhrfL5eEUtXOOT085962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:29AF0306A28BCA11|rigid:hY/2Azk4+cEZzMDia57NeGILbIA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25869 uniprotkb:O25868 intact:EBI-7568244|intact:MINT-185628|ensemblbacteria:AAD08326 intact:EBI-9268708|ensemblbacteria:AAD08325 psi-mi:trpe_helpy(display_long)|uniprotkb:HP_1282(locus name)|uniprotkb:trpE(gene name)|psi-mi:trpE(display_short) psi-mi:trpg_helpy(display_long)|uniprotkb:trpG(gene name)|psi-mi:trpG(display_short)|uniprotkb:Anthranilate synthase, GATase component(gene name synonym)|uniprotkb:Anthranilate synthase, glutamine amidotransferase component(gene name synonym)|uniprotkb:HP_1281(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326365|imex:IM-22256-537 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000624398.1|mint:O25869|refseq:NP_208074.1|ensemblbacteria:AAD08326(transcript)|ensemblbacteria:HP_1282(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004049"(anthranilate synthase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR005257(Anthranilate synthase component I, TrpE)|interpro:IPR005801(Anthranilate synthase component I and chorismate binding protein)|interpro:IPR006805(Anthranilate synthase component I, N-terminal)|interpro:IPR015890(Chorismate binding, C-terminal)|interpro:IPR019999|dip:DIP-3432N|uniprotkb:O25869(identity) refseq:WP_000688223.1|interpro:IPR006221(Glutamine amidotransferase of anthranilate synthase)|interpro:IPR017926|refseq:NP_208073.1|interpro:IPR029062|ensemblbacteria:AAD08325(transcript)|ensemblbacteria:HP_1281(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004049"(anthranilate synthase activity)|go:"GO:0006541"(glutamine metabolic process)|uniprotkb:O25868(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:eODPzT83iSUwQ2vz92ncSQTHO2k85962 rogid:67WXPEkDWRhyIXMEMjUWz7n3uws85962 intact-crc:B67960A975EEB103|rigid:4y1Z0vlsSt6d+3OQfbaABjwUX/I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:O25895 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326473|imex:IM-22256-543 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:0403C1089DDC685A|rigid:h3Hbt7rEn9isauPi9FBJXxaZtwU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25880 uniprotkb:O25094 intact:EBI-7497265|intact:MINT-171630|ensemblbacteria:AAD08366 intact:EBI-7584994|intact:MINT-171400|ensemblbacteria:AAD07394 psi-mi:o25880_helpy(display_long)|uniprotkb:HP_1321(locus name) psi-mi:pseh_helpy(display_long)|uniprotkb:pseH(gene name)|psi-mi:pseH(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein H(gene name synonym)|uniprotkb:HP_0327(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326455|imex:IM-22256-542 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25880|refseq:NP_208113.1|ensemblbacteria:AAD08366(transcript)|ensemblbacteria:HP_1321(gene)|go:"GO:0005524"(ATP binding)|interpro:IPR027417|refseq:WP_001268291.1|dip:DIP-3339N|uniprotkb:O25880(identity) mint:O25094|refseq:WP_000742697.1|refseq:NP_207125.1|ensemblbacteria:AAD07394(transcript)|ensemblbacteria:HP_0327(gene)|go:"GO:0008080"(N-acetyltransferase activity)|interpro:IPR000182(GCN5-related N-acetyltransferase)|interpro:IPR016181(Acyl-CoA N-acyltransferase)|interpro:IPR020036|rcsb pdb:4RI1|dip:DIP-3555N|uniprotkb:O25094(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KJdUSA35nj6j41lYMx/gMx0124k85962 rogid:uDBKnnI5LujCSAw9Z5WaulboR8Y85962 intact-crc:5EB3CA4682D6044F|rigid:8fhQHGqc5ac5C42EBeJPyT0ZXCo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25880 uniprotkb:O24972 intact:EBI-7497265|intact:MINT-171630|ensemblbacteria:AAD08366 intact:EBI-9260411|uniprotkb:O24971|ensemblbacteria:AAD07233|ensemblbacteria:AAD07239 psi-mi:o25880_helpy(display_long)|uniprotkb:HP_1321(locus name) psi-mi:arss_helpy(display_long)|uniprotkb:arsS(gene name)|psi-mi:arsS(display_short)|uniprotkb:HP_0164/HP_0165(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326437|imex:IM-22256-541 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25880|refseq:NP_208113.1|ensemblbacteria:AAD08366(transcript)|ensemblbacteria:HP_1321(gene)|go:"GO:0005524"(ATP binding)|interpro:IPR027417|refseq:WP_001268291.1|dip:DIP-3339N|uniprotkb:O25880(identity) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR036097|interpro:IPR036890|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|ensemblbacteria:AAD07233(transcript)|ensemblbacteria:AAD07239(transcript)|ensemblbacteria:HP_0164(gene)|ensemblbacteria:HP_0165(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24971(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2020/01/08 rogid:KJdUSA35nj6j41lYMx/gMx0124k85962 rogid:iGm8PnU59Azwe5NrINkshU2pVEA85962 intact-crc:1D67E8FEE5A48C98|rigid:NVDS+1oNiPUZGXu4KyyHZmNOvqw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25878 uniprotkb:P56077 intact:EBI-7617898|intact:MINT-174132|ensemblbacteria:AAD08334 intact:EBI-7691478|ensemblbacteria:AAD08538|intact:MINT-184242 psi-mi:o25878_helpy(display_long)|uniprotkb:HP_1291(locus name) psi-mi:pth_helpy(display_long)|uniprotkb:HP_1497(locus name)|uniprotkb:pth(gene name)|psi-mi:pth(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326419|imex:IM-22256-540 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001149282.1|mint:O25878|refseq:NP_208083.1|ensemblbacteria:AAD08334(transcript)|ensemblbacteria:HP_1291(gene)|go:"GO:0004788"(thiamine diphosphokinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006772"(thiamine metabolic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:0016301"(kinase activity)|interpro:IPR006282(Thiamin pyrophosphokinase)|interpro:IPR007371(Thiamin pyrophosphokinase, catalytic region)|interpro:IPR036759|dip:DIP-3699N|uniprotkb:O25878(identity) refseq:WP_000173978.1|ensemblbacteria:AAD08538(transcript)|ensemblbacteria:HP_1497(gene)|go:"GO:0004045"(aminoacyl-tRNA hydrolase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006412"(translation)|interpro:IPR001328(Peptidyl-tRNA hydrolase)|interpro:IPR018171|interpro:IPR036416|mint:P56077|refseq:NP_208288.1|dip:DIP-3642N|uniprotkb:P56077(identity) psi-mi:"MI:0469"(intact) comment:mint function:The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+gZVP3dg7r1utx+xGirwuV54O2o85962 rogid:OcpsPPZq/DyZerG2qxs1jD3xRfM85962 intact-crc:D623FA0032019F34|rigid:BFyswDJsJpzSp3h2nO7Z0KuvLDA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25638 uniprotkb:O25895 intact:EBI-7601848|intact:MINT-166704|ensemblbacteria:AAD08035 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:o25638_helpy(display_long)|uniprotkb:HP_0990(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326527|imex:IM-22256-546 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25638|ensemblbacteria:AAD08035(transcript)|ensemblbacteria:HP_0990(gene)|dip:DIP-3613N|uniprotkb:O25638(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rVJ82mdECNMncWYnxmuqK6CBT7w85962 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:03AD7458E4DBF823|rigid:W0wRfSLmQsPRmMYaswiheyY8OJE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25546 uniprotkb:O25895 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326509|imex:IM-22256-545 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:3309932A8EFD5A49|rigid:t5gaWWPyYuN9QXzHQ7gljDaqLuc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25310 uniprotkb:O25895 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326491|imex:IM-22256-544 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:B07ED014871DC440|rigid:Dw92Txl6BkcfvTFwKXflbkFNSLA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25678 uniprotkb:O25900 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9268907|ensemblbacteria:AAD08384 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o25900_helpy(display_long)|uniprotkb:HP_1343(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326599|imex:IM-22256-550 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_000395259.1|interpro:IPR005496(Integral membrane protein TerC)|refseq:NP_208135.1|ensemblbacteria:AAD08384(transcript)|ensemblbacteria:HP_1343(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25900(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:zxgi5eblWzqkBekaBAzv31fEXa485962 intact-crc:F9F35AD50BE6D789|rigid:MGusYZL9vu0NQQsjdr083ZKRZMI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZKJ1 uniprotkb:O25895 intact:EBI-9262335|ensemblbacteria:AAD06522 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:q9zkj1_helpj(display_long)|uniprotkb:jhp_0944(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326581|imex:IM-22256-549 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06522(transcript)|ensemblbacteria:jhp_0944(gene)|uniprotkb:Q9ZKJ1(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1R4utf6FSlcyXPNx5xhZw0DvxCU85963 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:4F4BDFA8E53D6D1D|rigid:2lzKwsIFqWehEVQsK6t1reZTFQg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:O25895 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326563|imex:IM-22256-548 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:2517EDDE4BE45E8C|rigid:uWQqPtBpeRfLbWAC3+8RLi37zDI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25768 uniprotkb:O25895 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326545|imex:IM-22256-547 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:02BD053253DA2294|rigid:sxzHl8wJeaYbXMo9sm9KNOZ/BY8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25912 uniprotkb:O24943 intact:EBI-9268958|ensemblbacteria:AAD08408 intact:EBI-9260876|ensemblbacteria:AAD07198 psi-mi:o25912_helpy(display_long)|uniprotkb:HP_1358(locus name) psi-mi:o24943_helpy(display_long)|uniprotkb:HP_0129(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326653|imex:IM-22256-553 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000953192.1|refseq:NP_208150.1|ensemblbacteria:AAD08408(transcript)|ensemblbacteria:HP_1358(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25912(identity) interpro:IPR038310|refseq:WP_000731991.1|interpro:IPR009488(Protein of unknown function DUF1104)|refseq:NP_206929.1|ensemblbacteria:AAD07198(transcript)|ensemblbacteria:HP_0129(gene)|uniprotkb:O24943(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2nZmrBMZGRSynryx03OjQWwlpuc85962 rogid:YH8hSCLRQPFmw/PXnvG+lvsz05Q85962 intact-crc:115B91AEE647AA14|rigid:l5JLjQGN2uif2OYRLdQLGZcbvkw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25904 uniprotkb:O25990 intact:EBI-7511943|intact:MINT-174374|ensemblbacteria:AAD08406 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o25904_helpy(display_long)|uniprotkb:HP_1349(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326635|imex:IM-22256-552 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25904|refseq:WP_000506091.1|refseq:NP_208141.1|ensemblbacteria:AAD08406(transcript)|ensemblbacteria:HP_1349(gene)|go:"GO:0016021"(integral component of membrane)|dip:DIP-3519N|uniprotkb:O25904(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ABBdDp1i7/tgjkDRnd1E74ZArB485962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:A749FAB83262C481|rigid:rgY8YMjMd6RSwwI7+ut5QTvur3s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25902 uniprotkb:Q9ZKK8 intact:EBI-9268922|ensemblbacteria:AAD08387 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25902_helpy(display_long)|uniprotkb:HP_1346(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326617|imex:IM-22256-551 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001122605.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020831|refseq:NP_208138.1|ensemblbacteria:AAD08387(transcript)|ensemblbacteria:HP_1346(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:O25902(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:WDogUyOni5hoqIb4mofVyCn9eRQ85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:79E21B6DEB87CBD1|rigid:jGFE7Jzhk6NYYnQeo69FHttqw8M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25884 uniprotkb:O25912 intact:EBI-7563847|intact:MINT-171833|ensemblbacteria:AAD08376 intact:EBI-9268958|ensemblbacteria:AAD08408 psi-mi:o25884_helpy(display_long)|uniprotkb:HP_1326(locus name) psi-mi:o25912_helpy(display_long)|uniprotkb:HP_1358(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326671|imex:IM-22256-554 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25884|refseq:WP_000731617.1|refseq:NP_208118.1|ensemblbacteria:AAD08376(transcript)|ensemblbacteria:HP_1326(gene)|interpro:IPR032693|dip:DIP-3424N|uniprotkb:O25884(identity) refseq:WP_000953192.1|refseq:NP_208150.1|ensemblbacteria:AAD08408(transcript)|ensemblbacteria:HP_1358(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25912(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2GEiy82NYJExrkehNqEbNjZmsIQ85962 rogid:2nZmrBMZGRSynryx03OjQWwlpuc85962 intact-crc:F469093E2EEA8A6C|rigid:ZLowQs6ZG4NaEFevkRNxu5b76Eo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25916 uniprotkb:O25498 intact:EBI-7529552|intact:MINT-181617|ensemblbacteria:AAD08402 intact:EBI-9262160|ensemblbacteria:AAD07873 psi-mi:dnab_helpy(display_long)|uniprotkb:HP_1362(locus name)|uniprotkb:dnaB(gene name)|psi-mi:dnaB(display_short) psi-mi:o25498_helpy(display_long)|uniprotkb:HP_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326725|imex:IM-22256-557 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25916|refseq:WP_000349722.1|refseq:NP_208154.1|ensemblbacteria:AAD08402(transcript)|ensemblbacteria:HP_1362(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006268"(DNA unwinding involved in DNA replication)|go:"GO:0006269"(DNA replication, synthesis of RNA primer)|go:"GO:0042802"(identical protein binding)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|go:"GO:1990077"(primosome complex)|interpro:IPR007692(DNA helicase, DnaB type)|interpro:IPR007693(DNA helicase, DnaB-like, N-terminal)|interpro:IPR007694(DNA helicase, DnaB-like, C-terminal)|interpro:IPR016136(DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal)|interpro:IPR027417|interpro:IPR036185|rcsb pdb:3GXV|rcsb pdb:4A1F|rcsb pdb:4ZC0|dip:DIP-3388N|uniprotkb:O25916(identity) refseq:WP_000437145.1|refseq:NP_207613.1|ensemblbacteria:AAD07873(transcript)|ensemblbacteria:HP_0820(gene)|uniprotkb:O25498(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with dnaC protein, primase, and other prepriming proteins - figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mE+3jUtRVjT3fQ16TTLYqZnc67A85962 rogid:cBhLCWEqc9/QdJfjtCvo7ltwdJs85962 intact-crc:B3A8EFF2F6E6DCFE|rigid:cL9eOKPWAGAk3GbPdBv2f4Bqirc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25098 uniprotkb:O25914 intact:EBI-7525931|intact:MINT-161558|ensemblbacteria:AAD07400 intact:EBI-9269006|ensemblbacteria:AAD08400 psi-mi:mind_helpy(display_long)|uniprotkb:Cell division inhibitor MinD(gene name synonym)|uniprotkb:HP_0331(locus name)|uniprotkb:minD(gene name)|psi-mi:minD(display_short) psi-mi:o25914_helpy(display_long)|uniprotkb:HP_1360(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326707|imex:IM-22256-556 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25098|refseq:WP_001019069.1|refseq:NP_207129.1|ensemblbacteria:AAD07400(transcript)|ensemblbacteria:HP_0331(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR010223(Septum site-determining protein MinD)|interpro:IPR025501|interpro:IPR027417|dip:DIP-3247N|uniprotkb:O25098(identity) refseq:WP_000913908.1|interpro:IPR000537(UbiA prenyltransferase)|interpro:IPR006371(4-hydroxybenzoate polyprenyltransferase related)|refseq:NP_208152.1|interpro:IPR039653|go:"GO:0016021"(integral component of membrane)|go:"GO:0016765"("transferase activity, transferring alkyl or aryl (other than methyl) groups")|go:"GO:0006744"(ubiquinone biosynthetic process)|ensemblbacteria:AAD08400(transcript)|ensemblbacteria:HP_1360(gene)|go:"GO:0005886"(plasma membrane)|uniprotkb:O25914(identity) psi-mi:"MI:0469"(intact) comment:mint|function:ATPase required for the correct placement of the division site. Cell division inhibitors minC and minD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize ftsZ filaments that have formed before they mature into polar Z rings - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:g+X6QS/gyLXZ5JsxHvQ8dHSCKMw85962 rogid:rv+3pv9juE3AahtAFlKVhGc9Q7A85962 intact-crc:5EBDF764E946184F|rigid:Oo3wUcnnwnc49ssi8bDdkHttCnY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25912 uniprotkb:O26052 intact:EBI-9268958|ensemblbacteria:AAD08408 intact:EBI-9268988|ensemblbacteria:AAD08566 psi-mi:o25912_helpy(display_long)|uniprotkb:HP_1358(locus name) psi-mi:o26052_helpy(display_long)|uniprotkb:HP_1524(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326689|imex:IM-22256-555 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000953192.1|refseq:NP_208150.1|ensemblbacteria:AAD08408(transcript)|ensemblbacteria:HP_1358(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25912(identity) refseq:WP_000837022.1|refseq:NP_208314.1|ensemblbacteria:AAD08566(transcript)|ensemblbacteria:HP_1524(gene)|uniprotkb:O26052(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2nZmrBMZGRSynryx03OjQWwlpuc85962 rogid:FhQuvCmIH5MakSYE97+ksGIN1BU85962 intact-crc:A5B9E162BE0EB2A7|rigid:fcmxD3EveVS6vVbac4HxSEHX+Vg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25938 uniprotkb:O25938 intact:EBI-9266908|ensemblbacteria:AAD08430 intact:EBI-9266908|ensemblbacteria:AAD08430 psi-mi:o25938_helpy(display_long)|uniprotkb:HP_1388(locus name) psi-mi:o25938_helpy(display_long)|uniprotkb:HP_1388(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326779|imex:IM-22256-560 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862625.1|refseq:NP_208179.1|ensemblbacteria:AAD08430(transcript)|ensemblbacteria:HP_1388(gene)|uniprotkb:O25938(identity) refseq:WP_001862625.1|refseq:NP_208179.1|ensemblbacteria:AAD08430(transcript)|ensemblbacteria:HP_1388(gene)|uniprotkb:O25938(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lD4BCbeqG3Vu7n2+k431kkKoWTU85962 rogid:lD4BCbeqG3Vu7n2+k431kkKoWTU85962 intact-crc:A86D56888BE63C91|rigid:mBNRzwZk3/29A5rUVzG8bb+Ix6I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P65108 uniprotkb:O25928 intact:EBI-7668479|ensemblbacteria:AAD08360|uniprotkb:P55974|intact:MINT-4074587 intact:EBI-9269061|ensemblbacteria:AAD08419 psi-mi:if1_helpy(display_long)|uniprotkb:infA(gene name)|psi-mi:infA(display_short)|uniprotkb:HP_1298(locus name) psi-mi:fabz_helpy(display_long)|uniprotkb:fabZ(gene name)|psi-mi:fabZ(display_short)|uniprotkb:"(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase"(gene name synonym)|uniprotkb:Beta-hydroxyacyl-ACP dehydratase(gene name synonym)|uniprotkb:HP_1376(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326761|imex:IM-22256-559 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08360(transcript)|ensemblbacteria:HP_1298(gene)|go:"GO:0003743"(translation initiation factor activity)|go:"GO:0005829"(cytosol)|go:"GO:0019843"(rRNA binding)|go:"GO:0043022"(ribosome binding)|mint:P65108|interpro:IPR004368(Translation initiation factor IF-1)|interpro:IPR006196(S1, IF1 type)|refseq:WP_000090248.1|refseq:NP_208090.1|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022967|uniprotkb:P65108(identity) refseq:WP_000438056.1|interpro:IPR010084("Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ")|interpro:IPR013114("Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ")|rcsb pdb:2GLL|rcsb pdb:2GLM|rcsb pdb:2GLP|rcsb pdb:2GLV|refseq:NP_208167.1|interpro:IPR029069|ensemblbacteria:AAD08419(transcript)|ensemblbacteria:HP_1376(gene)|go:"GO:0004317"(3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008659"("(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity")|go:"GO:0008693"(3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0047451"(3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity)|uniprotkb:O25928(identity) psi-mi:"MI:0469"(intact) comment:mint|function:No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3 - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:SwjUtc3/MXEaVtxN40k8OL3R7+w85962 rogid:YiYDazSh//nCGtw70F7aDb27WYw85962 intact-crc:1F628C8B59498849|rigid:uMrcOxvaLLUwRyLpL6UVdkia3j4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25926 uniprotkb:O26015 intact:EBI-7586537|intact:MINT-176903|ensemblbacteria:AAD08417 intact:EBI-9269040|ensemblbacteria:AAD08531 psi-mi:clpx_helpy(display_long)|uniprotkb:clpX(gene name)|psi-mi:clpX(display_short)|uniprotkb:HP_1374(locus name) psi-mi:o26015_helpy(display_long)|uniprotkb:HP_1481(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326743|imex:IM-22256-558 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25926|refseq:WP_001006287.1|refseq:NP_208165.1|ensemblbacteria:AAD08417(transcript)|ensemblbacteria:HP_1374(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006457"(protein folding)|go:"GO:0006508"(proteolysis)|go:"GO:0008270"(zinc ion binding)|go:"GO:0030163"(protein catabolic process)|go:"GO:0046983"(protein dimerization activity)|go:"GO:0051082"(unfolded protein binding)|go:"GO:0051301"(cell division)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004487(ClpX, ATPase regulatory subunit)|interpro:IPR010603(Zinc finger, C4-type)|interpro:IPR019489|interpro:IPR027417|rcsb pdb:1UM8|dip:DIP-3286N|uniprotkb:O25926(identity) refseq:WP_001262107.1|interpro:IPR036526|interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|refseq:NP_208272.1|ensemblbacteria:AAD08531(transcript)|ensemblbacteria:HP_1481(gene)|go:"GO:0016811"("hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides")|go:"GO:0033388"(putrescine biosynthetic process from arginine)|go:"GO:0050126"(N-carbamoylputrescine amidase activity)|uniprotkb:O26015(identity) psi-mi:"MI:0469"(intact) function:ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of clpP|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zqFoRyWXt1UK+aWyArWhhr0Zwho85962 rogid:O/BjJVdGFjXYa0HPSXb01f5YzKw85962 intact-crc:7715A238A4568607|rigid:ZvzOCZIQJKLLANMQpveA8KVkB4M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25766 uniprotkb:O25939 intact:EBI-7612675|intact:MINT-179982|ensemblbacteria:AAD08192 intact:EBI-9266334|ensemblbacteria:AAD08437 psi-mi:trmd_helpy(display_long)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short)|uniprotkb:HP_1148(locus name)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym) psi-mi:o25939_helpy(display_long)|uniprotkb:HP_1389(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326851|imex:IM-22256-564 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25766|refseq:WP_000672977.1|refseq:NP_207939.1|ensemblbacteria:AAD08192(transcript)|ensemblbacteria:HP_1148(gene)|go:"GO:0002939"(tRNA N1-guanine methylation)|go:"GO:0005829"(cytosol)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR023148|interpro:IPR029026|interpro:IPR029028|dip:DIP-3681N|uniprotkb:O25766(identity) refseq:NP_208180.1|ensemblbacteria:AAD08437(transcript)|ensemblbacteria:HP_1389(gene)|uniprotkb:O25939(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Specifically methylates guanosine-37 in various tRNAs - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O9rQL0es2QZVKJFFGMJtNv3l0gE85962 rogid:8KrGq0QO0ahvNyyYA1dfWFdO/+I85962 intact-crc:DBAE732389181FF1|rigid:d1Ksg7C3ICMJdfRkUwGNx31VOEE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25692 uniprotkb:O25939 intact:EBI-7574216|intact:MINT-182315|ensemblbacteria:AAD08098 intact:EBI-9266334|ensemblbacteria:AAD08437 psi-mi:lpxc_helpy(display_long)|uniprotkb:lpxC(gene name)|psi-mi:lpxC(display_short)|uniprotkb:UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase(gene name synonym)|uniprotkb:HP_1052(locus name) psi-mi:o25939_helpy(display_long)|uniprotkb:HP_1389(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326833|imex:IM-22256-563 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25692|refseq:WP_000815275.1|refseq:NP_207843.1|ensemblbacteria:AAD08098(transcript)|ensemblbacteria:HP_1052(gene)|go:"GO:0008759"(UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0103117"(UDP-3-O-acyl-N-acetylglucosamine deacetylase activity)|interpro:IPR004463(UDP-3-O-acyl N-acetylglucosamine deacetylase)|interpro:IPR011334(UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal)|interpro:IPR015870(UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal)|interpro:IPR020568|dip:DIP-3457N|uniprotkb:O25692(identity) refseq:NP_208180.1|ensemblbacteria:AAD08437(transcript)|ensemblbacteria:HP_1389(gene)|uniprotkb:O25939(identity) psi-mi:"MI:0469"(intact) function:Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Qtz7RUkn8lsaMXT9vhnsK4r3OIk85962 rogid:8KrGq0QO0ahvNyyYA1dfWFdO/+I85962 intact-crc:19C8A3EA8E8866F6|rigid:8/kGJrlaTF53v9Y2A/ZIR5lfY6E false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25546 uniprotkb:O25939 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-9266334|ensemblbacteria:AAD08437 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:o25939_helpy(display_long)|uniprotkb:HP_1389(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326815|imex:IM-22256-562 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) refseq:NP_208180.1|ensemblbacteria:AAD08437(transcript)|ensemblbacteria:HP_1389(gene)|uniprotkb:O25939(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:8KrGq0QO0ahvNyyYA1dfWFdO/+I85962 intact-crc:2FFFA3E893A9B4EB|rigid:JV8rDXqLGXwXKYb9oi3vds7pUhI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25186 uniprotkb:O25939 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9266334|ensemblbacteria:AAD08437 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o25939_helpy(display_long)|uniprotkb:HP_1389(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326797|imex:IM-22256-561 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) refseq:NP_208180.1|ensemblbacteria:AAD08437(transcript)|ensemblbacteria:HP_1389(gene)|uniprotkb:O25939(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:8KrGq0QO0ahvNyyYA1dfWFdO/+I85962 intact-crc:812D3060D278FCAA|rigid:qAGl2rjunM89w3cpKLp9uvbFaLQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:P66119 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9269182|uniprotkb:P56048|ensemblbacteria:AAD08356 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:rl23_helpy(display_long)|uniprotkb:rplW(gene name)|psi-mi:rplW(display_short)|uniprotkb:HP_1317(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326905|imex:IM-22256-567 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|refseq:WP_000763613.1|interpro:IPR012678(Ribosomal protein L23/L15e, core)|interpro:IPR013025(Ribosomal protein L25/L23)|refseq:NP_208109.1|ensemblbacteria:AAD08356(transcript)|ensemblbacteria:HP_1317(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|uniprotkb:P66119(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:v1pJq0ns1aWw6imhkh/Eb/q3ijA85962 intact-crc:A1ABBE8BB44ED1AB|rigid:99R+gVLlj/V5Qu6YvcETaJD7T1k false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:O25488 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326887|imex:IM-22256-566 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:CD04D263287DBBDA|rigid:Emr18/GlEYDiugLYzgOyDV8ywuU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25939 uniprotkb:Q9ZMH3 intact:EBI-9266334|ensemblbacteria:AAD08437 intact:EBI-9265592|ensemblbacteria:AAD05823 psi-mi:o25939_helpy(display_long)|uniprotkb:HP_1389(locus name) psi-mi:q9zmh3_helpj(display_long)|uniprotkb:jhp_0247(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326869|imex:IM-22256-565 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_208180.1|ensemblbacteria:AAD08437(transcript)|ensemblbacteria:HP_1389(gene)|uniprotkb:O25939(identity) refseq:WP_010882505.1|interpro:IPR041551|ensemblbacteria:AAD05823(transcript)|ensemblbacteria:jhp_0247(gene)|uniprotkb:Q9ZMH3(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:8KrGq0QO0ahvNyyYA1dfWFdO/+I85962 rogid:bBvE/oCHqYoN/0oAcM3TD1stXro85963 intact-crc:011C09956B78FE10|rigid:MkZjfKcCjYqcmGmlL/iOgnQnnPs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25053 uniprotkb:O25947 intact:EBI-7540736|intact:MINT-175004|ensemblbacteria:AAD07349 intact:EBI-9269250|ensemblbacteria:AAD08442 psi-mi:o25053_helpy(display_long)|uniprotkb:HP_0276(locus name) psi-mi:o25947_helpy(display_long)|uniprotkb:HP_1397(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326977|imex:IM-22256-571 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25053|refseq:WP_001155742.1|refseq:NP_207074.1|ensemblbacteria:AAD07349(transcript)|ensemblbacteria:HP_0276(gene)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|go:"GO:0000162"(tryptophan biosynthetic process)|dip:DIP-3325N|uniprotkb:O25053(identity) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD08442(transcript)|ensemblbacteria:HP_1397(gene)|uniprotkb:O25947(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DsRzABLIdfqyaWU6ai6Ur5GhiG485962 rogid:niMTXNqvukF9QazF+vDpCRlD4Xo85962 intact-crc:AC049E04065AC83E|rigid:mrhEv4X1Ou9maRSof4gvditJ1Zw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94845 uniprotkb:O25944 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-7667035|ensemblbacteria:AAD08434|intact:MINT-4074458 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:nadk_helpy(display_long)|uniprotkb:nadK(gene name)|psi-mi:nadK(display_short)|uniprotkb:ATP-dependent NAD kinase(gene name synonym)|uniprotkb:HP_1394(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326959|imex:IM-22256-570 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) ensemblbacteria:AAD08434(transcript)|ensemblbacteria:HP_1394(gene)|go:"GO:0003951"(NAD+ kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006741"(NADP biosynthetic process)|go:"GO:0019674"(NAD metabolic process)|go:"GO:0046872"(metal ion binding)|mint:O25944|interpro:IPR002504(ATP-NAD/AcoX kinase)|refseq:WP_000655300.1|interpro:IPR017437(ATP-NAD kinase, PpnK-type, all-beta)|interpro:IPR017438(ATP-NAD kinase, PpnK-type, alpha/beta)|interpro:IPR016064(ATP-NAD kinase, PpnK-type)|refseq:NP_208185.1|uniprotkb:O25944(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Catalyzes the phosphorylation of NAD to NADP. Utilizes ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:w374YY1LDL1E9SXwq46FJ2tMLuc85962 intact-crc:3588D9FAE8BA4BE5|rigid:X1cWJZcs/dyGQDcupnULkq7k7PU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25944 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-7667035|ensemblbacteria:AAD08434|intact:MINT-4074458 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:nadk_helpy(display_long)|uniprotkb:nadK(gene name)|psi-mi:nadK(display_short)|uniprotkb:ATP-dependent NAD kinase(gene name synonym)|uniprotkb:HP_1394(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326941|imex:IM-22256-569 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) ensemblbacteria:AAD08434(transcript)|ensemblbacteria:HP_1394(gene)|go:"GO:0003951"(NAD+ kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006741"(NADP biosynthetic process)|go:"GO:0019674"(NAD metabolic process)|go:"GO:0046872"(metal ion binding)|mint:O25944|interpro:IPR002504(ATP-NAD/AcoX kinase)|refseq:WP_000655300.1|interpro:IPR017437(ATP-NAD kinase, PpnK-type, all-beta)|interpro:IPR017438(ATP-NAD kinase, PpnK-type, alpha/beta)|interpro:IPR016064(ATP-NAD kinase, PpnK-type)|refseq:NP_208185.1|uniprotkb:O25944(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint comment:mint|function:Catalyzes the phosphorylation of NAD to NADP. Utilizes ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:w374YY1LDL1E9SXwq46FJ2tMLuc85962 intact-crc:69C82FA195EB1CE0|rigid:mKPF27GZv3e1n4z0RGuvb3b7ZTA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25944 uniprotkb:O25775 intact:EBI-7667035|ensemblbacteria:AAD08434|intact:MINT-4074458 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 psi-mi:nadk_helpy(display_long)|uniprotkb:nadK(gene name)|psi-mi:nadK(display_short)|uniprotkb:ATP-dependent NAD kinase(gene name synonym)|uniprotkb:HP_1394(locus name) psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326923|imex:IM-22256-568 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08434(transcript)|ensemblbacteria:HP_1394(gene)|go:"GO:0003951"(NAD+ kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006741"(NADP biosynthetic process)|go:"GO:0019674"(NAD metabolic process)|go:"GO:0046872"(metal ion binding)|mint:O25944|interpro:IPR002504(ATP-NAD/AcoX kinase)|refseq:WP_000655300.1|interpro:IPR017437(ATP-NAD kinase, PpnK-type, all-beta)|interpro:IPR017438(ATP-NAD kinase, PpnK-type, alpha/beta)|interpro:IPR016064(ATP-NAD kinase, PpnK-type)|refseq:NP_208185.1|uniprotkb:O25944(identity) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the phosphorylation of NAD to NADP. Utilizes ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus function:May have metalloprotease activity|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:w374YY1LDL1E9SXwq46FJ2tMLuc85962 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 intact-crc:0ABC3CE5DBB89D91|rigid:BKWCWZTJRdvfd9cs/QML6T/xKmA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25947 uniprotkb:Q9ZN16 intact:EBI-9269250|ensemblbacteria:AAD08442 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:o25947_helpy(display_long)|uniprotkb:HP_1397(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327031|imex:IM-22256-574 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD08442(transcript)|ensemblbacteria:HP_1397(gene)|uniprotkb:O25947(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:niMTXNqvukF9QazF+vDpCRlD4Xo85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:2F160CC8F792665D|rigid:444CP0bMU3/6Qqj4T+QKw5iBIHg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25947 uniprotkb:O25265 intact:EBI-9269250|ensemblbacteria:AAD08442 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:o25947_helpy(display_long)|uniprotkb:HP_1397(locus name) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327013|imex:IM-22256-573 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD08442(transcript)|ensemblbacteria:HP_1397(gene)|uniprotkb:O25947(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:niMTXNqvukF9QazF+vDpCRlD4Xo85962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:4A4C302BA7F5879F|rigid:hYlBCCy+DRb1HOMbHO4mTbt67yk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25106 uniprotkb:O25947 intact:EBI-7547211|intact:MINT-160173|ensemblbacteria:AAD07411 intact:EBI-9269250|ensemblbacteria:AAD08442 psi-mi:o25106_helpy(display_long)|uniprotkb:HP_0339(locus name) psi-mi:o25947_helpy(display_long)|uniprotkb:HP_1397(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9326995|imex:IM-22256-572 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010875465.1|mint:O25106|refseq:NP_207137.1|ensemblbacteria:AAD07411(transcript)|ensemblbacteria:HP_0339(gene)|go:"GO:0003796"(lysozyme activity)|interpro:IPR023346|interpro:IPR023347|dip:DIP-3368N|uniprotkb:O25106(identity) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD08442(transcript)|ensemblbacteria:HP_1397(gene)|uniprotkb:O25947(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JO4aX79qQZmcDJBjoXUMz5flMcI85962 rogid:niMTXNqvukF9QazF+vDpCRlD4Xo85962 intact-crc:CBA9739A7E17E646|rigid:ImQFEe1XAKkpHXk4RZBxYBHUwv0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25955 uniprotkb:O25790 intact:EBI-9269346|ensemblbacteria:AAD08450 intact:EBI-9261675|ensemblbacteria:AAD08226 psi-mi:o25955_helpy(display_long)|uniprotkb:HP_1405(locus name) psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327103|imex:IM-22256-578 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08450(transcript)|ensemblbacteria:HP_1405(gene)|uniprotkb:O25955(identity) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9uRbsL9mRIVWeX36/3kvvNkY8Jo85962 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 intact-crc:0ADDCD227C836884|rigid:1gLlKA3zerFoOI92+Aqx83ghyHs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25186 uniprotkb:O25955 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9269346|ensemblbacteria:AAD08450 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o25955_helpy(display_long)|uniprotkb:HP_1405(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327085|imex:IM-22256-577 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) ensemblbacteria:AAD08450(transcript)|ensemblbacteria:HP_1405(gene)|uniprotkb:O25955(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:9uRbsL9mRIVWeX36/3kvvNkY8Jo85962 intact-crc:F290C7134F3AF9B7|rigid:8kJzEejg+moEOFk45kp1C3DcvUY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25953 uniprotkb:Q9ZKV7 intact:EBI-7670804|ensemblbacteria:AAD08446|intact:MINT-4074720 intact:EBI-9269328|ensemblbacteria:AAD06405 psi-mi:o25953_helpy(display_long)|uniprotkb:HP_1403(locus name) psi-mi:q9zkv7_helpj(display_long)|uniprotkb:jhp_0828(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327067|imex:IM-22256-576 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08446(transcript)|ensemblbacteria:HP_1403(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR004546(Restriction endonuclease, type I, EcoRI, M subunit)|interpro:IPR022749|interpro:IPR029063|interpro:IPR038333|mint:O25953|refseq:NP_208194.1|refseq:WP_000985413.1|dip:DIP-3702N|uniprotkb:O25953(identity) refseq:WP_000917077.1|ensemblbacteria:AAD06405(transcript)|ensemblbacteria:jhp_0828(gene)|uniprotkb:Q9ZKV7(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:f1q0+Fn5CwQXTSqcgGeubxvoRW885962 rogid:32ur07LEjcTYTp1Bj4VFb/unpYo85963 intact-crc:495D41934F698900|rigid:1Oi8bWcW8SsWO5sNaW8oWF9zqdU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25581 uniprotkb:O25948 intact:EBI-7675108|ensemblbacteria:AAD07977|intact:MINT-177793 intact:EBI-9269313|ensemblbacteria:AAD08435 psi-mi:y924_helpy(display_long)|uniprotkb:HP_0924(locus name) psi-mi:o25948_helpy(display_long)|uniprotkb:HP_1398(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327049|imex:IM-22256-575 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07977(transcript)|ensemblbacteria:HP_0924(gene)|go:"GO:0006725"(cellular aromatic compound metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR004370(4-oxalocrotonate tautomerase)|interpro:IPR014347(Tautomerase)|interpro:IPR018191|rcsb pdb:2ORM|rcsb pdb:3M21|mint:O25581|refseq:NP_207716.1|refseq:WP_001115881.1|dip:DIP-3525N|uniprotkb:O25581(identity) refseq:WP_000152122.1|interpro:IPR036291|interpro:IPR007698(Alanine dehydrogenase/PNT, C-terminal)|interpro:IPR007886(Alanine dehydrogenase/PNT, N-terminal)|refseq:NP_208189.1|interpro:IPR008141(Alanine dehydrogenase and pyridine nucleotide transhydrogenase)|ensemblbacteria:AAD08435(transcript)|ensemblbacteria:HP_1398(gene)|go:"GO:0000286"(alanine dehydrogenase activity)|go:"GO:0006524"(alanine catabolic process)|go:"GO:0042853"(L-alanine catabolic process)|uniprotkb:O25948(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uTfgVa1jx934RIxFBjUfit8hmqU85962 rogid:yTvme6kA47GqEbYkJAdadrSStfk85962 intact-crc:D8FC1E8DE0C50462|rigid:09N9tTdnW9zzlqbps5uq7yg0Bcg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56132 uniprotkb:O25955 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-9269346|ensemblbacteria:AAD08450 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:o25955_helpy(display_long)|uniprotkb:HP_1405(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327157|imex:IM-22256-581 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) ensemblbacteria:AAD08450(transcript)|ensemblbacteria:HP_1405(gene)|uniprotkb:O25955(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:9uRbsL9mRIVWeX36/3kvvNkY8Jo85962 intact-crc:C21F53986178752F|rigid:6Iudff/EhY1IydkzyO+oVU4nUG4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25983 uniprotkb:O25955 intact:EBI-9264349|ensemblbacteria:AAD08480 intact:EBI-9269346|ensemblbacteria:AAD08450 psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:o25955_helpy(display_long)|uniprotkb:HP_1405(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327139|imex:IM-22256-580 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) ensemblbacteria:AAD08450(transcript)|ensemblbacteria:HP_1405(gene)|uniprotkb:O25955(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 rogid:9uRbsL9mRIVWeX36/3kvvNkY8Jo85962 intact-crc:23121B434094351D|rigid:tT+Txl0nsQpaZZXz/F5nJ2HVsk0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25805 uniprotkb:O25955 intact:EBI-9268129|ensemblbacteria:AAD08244 intact:EBI-9269346|ensemblbacteria:AAD08450 psi-mi:o25805_helpy(display_long)|uniprotkb:HP_1194(locus name) psi-mi:o25955_helpy(display_long)|uniprotkb:HP_1405(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327121|imex:IM-22256-579 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08244(transcript)|ensemblbacteria:HP_1194(gene)|uniprotkb:O25805(identity) ensemblbacteria:AAD08450(transcript)|ensemblbacteria:HP_1405(gene)|uniprotkb:O25955(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LYpn+S16rlrjqSTwSHd4o28xxNo85962 rogid:9uRbsL9mRIVWeX36/3kvvNkY8Jo85962 intact-crc:4D5B8E4ADCF69024|rigid:jSwDykA5kIDTQe8m5MsshfVg2Zg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25768 uniprotkb:O25960 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-527816|ensemblbacteria:AAD08457 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:o25960_helpy(display_long)|uniprotkb:rsfS(gene name)|psi-mi:rsfS(display_short)|uniprotkb:HP_1414(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327229|imex:IM-22256-585 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) dip:DIP-3272N|refseq:NP_208205.1|ensemblbacteria:AAD08457(transcript)|ensemblbacteria:HP_1414(gene)|go:"GO:0005737"(cytoplasm)|refseq:WP_001076151.1|go:"GO:0017148"(negative regulation of translation)|go:"GO:0042256"(mature ribosome assembly)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0090071"(negative regulation of ribosome biogenesis)|interpro:IPR004394(Iojap-related protein)|interpro:IPR043519|mint:O25960|uniprotkb:O25960(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:D81Qev7q3yhulo8xGNT2sEgMAVc85962 intact-crc:95693508E3425D29|rigid:quCImRWGSlbNMx6q6rGb90smpSg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25960 uniprotkb:O25258 intact:EBI-527816|ensemblbacteria:AAD08457 intact:EBI-2506871|ensemblbacteria:AAD07589 psi-mi:o25960_helpy(display_long)|uniprotkb:rsfS(gene name)|psi-mi:rsfS(display_short)|uniprotkb:HP_1414(locus name) psi-mi:o25258_helpy(display_long)|uniprotkb:HP_0522(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327211|imex:IM-22256-584 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) dip:DIP-3272N|refseq:NP_208205.1|ensemblbacteria:AAD08457(transcript)|ensemblbacteria:HP_1414(gene)|go:"GO:0005737"(cytoplasm)|refseq:WP_001076151.1|go:"GO:0017148"(negative regulation of translation)|go:"GO:0042256"(mature ribosome assembly)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0090071"(negative regulation of ribosome biogenesis)|interpro:IPR004394(Iojap-related protein)|interpro:IPR043519|mint:O25960|uniprotkb:O25960(identity) ensemblbacteria:AAD07589(transcript)|ensemblbacteria:HP_0522(gene)|refseq:NP_207318.1|refseq:WP_000488766.1|dip:DIP-3529N|mint:O25258|uniprotkb:O25258(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:D81Qev7q3yhulo8xGNT2sEgMAVc85962 rogid:wcW402Skc8nrZHe73TcbOslWYps85962 intact-crc:F1447973FC0C5636|rigid:TzmDzwGeMdhc3d/CPBPetTIiUJk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25255 uniprotkb:O25960 intact:EBI-7540370|intact:MINT-171745|ensemblbacteria:AAD07586 intact:EBI-527816|ensemblbacteria:AAD08457 psi-mi:o25255_helpy(display_long)|uniprotkb:HP_0518(locus name) psi-mi:o25960_helpy(display_long)|uniprotkb:rsfS(gene name)|psi-mi:rsfS(display_short)|uniprotkb:HP_1414(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327193|imex:IM-22256-583 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25255|refseq:WP_000757130.1|refseq:NP_207315.1|ensemblbacteria:AAD07586(transcript)|ensemblbacteria:HP_0518(gene)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0016740"(transferase activity)|interpro:IPR005490(ErfK/YbiS/YcfS/YnhG)|interpro:IPR032710|interpro:IPR038063|rcsb pdb:4XZZ|rcsb pdb:4Y4V|dip:DIP-3322N|uniprotkb:O25255(identity) dip:DIP-3272N|refseq:NP_208205.1|ensemblbacteria:AAD08457(transcript)|ensemblbacteria:HP_1414(gene)|go:"GO:0005737"(cytoplasm)|refseq:WP_001076151.1|go:"GO:0017148"(negative regulation of translation)|go:"GO:0042256"(mature ribosome assembly)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0090071"(negative regulation of ribosome biogenesis)|interpro:IPR004394(Iojap-related protein)|interpro:IPR043519|mint:O25960|uniprotkb:O25960(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:u5NoUBW79EhL8CJCOVtEiF+Cur085962 rogid:D81Qev7q3yhulo8xGNT2sEgMAVc85962 intact-crc:86C92BF3815ED64B|rigid:bpv0L5G745Uh6afx1nUE6SxwMw0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25171 uniprotkb:O25957 intact:EBI-7567173|intact:MINT-167571|ensemblbacteria:AAD07482 intact:EBI-9269427|ensemblbacteria:AAD08449 psi-mi:o25171_helpy(display_long)|uniprotkb:HP_0416(locus name) psi-mi:o25957_helpy(display_long)|uniprotkb:HP_1407(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327175|imex:IM-22256-582 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000623798.1|mint:O25171|refseq:NP_207214.1|ensemblbacteria:AAD07482(transcript)|ensemblbacteria:HP_0416(gene)|go:"GO:0008610"(lipid biosynthetic process)|interpro:IPR003333(Cyclopropane-fatty-acyl-phospholipid synthase)|interpro:IPR029063|dip:DIP-3430N|uniprotkb:O25171(identity) refseq:WP_001208606.1|interpro:IPR017039(Ribonuclease BN)|refseq:NP_208198.1|ensemblbacteria:AAD08449(transcript)|ensemblbacteria:HP_1407(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25957(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nDvltwXjFIuWX5qW0S2FkiGx19085962 rogid:CQHGp0Hj4FxMMS07vYXj5vfFhKw85962 intact-crc:BFF88A731A6AA1BE|rigid:aaJfxvTfQzHEpkou7JuUgxVKJIo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25965 uniprotkb:O25965 intact:EBI-7631463|ensemblbacteria:AAD08463|intact:MINT-169065 intact:EBI-7631463|ensemblbacteria:AAD08463|intact:MINT-169065 psi-mi:o25965_helpy(display_long)|uniprotkb:HP_1421(locus name) psi-mi:o25965_helpy(display_long)|uniprotkb:HP_1421(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327283|imex:IM-22256-588 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08463(transcript)|ensemblbacteria:HP_1421(gene)|interpro:IPR001482(Type II secretion system protein E)|interpro:IPR027417|mint:O25965|refseq:WP_000854872.1|refseq:NP_208212.1|dip:DIP-3731N|uniprotkb:O25965(identity) ensemblbacteria:AAD08463(transcript)|ensemblbacteria:HP_1421(gene)|interpro:IPR001482(Type II secretion system protein E)|interpro:IPR027417|mint:O25965|refseq:WP_000854872.1|refseq:NP_208212.1|dip:DIP-3731N|uniprotkb:O25965(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gRZd8B4YMHshw7qZZacp68EYNwU85962 rogid:gRZd8B4YMHshw7qZZacp68EYNwU85962 intact-crc:B9FCE4AC78060633|rigid:raHnR4pEKr85WNk9kwUiWKTQQuI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25960 uniprotkb:P56044 intact:EBI-527816|ensemblbacteria:AAD08457 intact:EBI-9261001|ensemblbacteria:AAD08191 psi-mi:o25960_helpy(display_long)|uniprotkb:rsfS(gene name)|psi-mi:rsfS(display_short)|uniprotkb:HP_1414(locus name) psi-mi:rl19_helpy(display_long)|uniprotkb:rplS(gene name)|psi-mi:rplS(display_short)|uniprotkb:HP_1147(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327265|imex:IM-22256-587 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) dip:DIP-3272N|refseq:NP_208205.1|ensemblbacteria:AAD08457(transcript)|ensemblbacteria:HP_1414(gene)|go:"GO:0005737"(cytoplasm)|refseq:WP_001076151.1|go:"GO:0017148"(negative regulation of translation)|go:"GO:0042256"(mature ribosome assembly)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0090071"(negative regulation of ribosome biogenesis)|interpro:IPR004394(Iojap-related protein)|interpro:IPR043519|mint:O25960|uniprotkb:O25960(identity) refseq:WP_000797699.1|interpro:IPR001857(Ribosomal protein L19)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR018257|refseq:NP_207938.1|interpro:IPR038657|ensemblbacteria:AAD08191(transcript)|ensemblbacteria:HP_1147(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56044(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:D81Qev7q3yhulo8xGNT2sEgMAVc85962 rogid:nSldGvsSYOnzUDqkFrp6p2IdgB485962 intact-crc:772393FFC1968711|rigid:n7b1IdpPLa6/76c2MABoFxtxPXk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56023 uniprotkb:O25960 intact:EBI-9269487|ensemblbacteria:AAD08199 intact:EBI-527816|ensemblbacteria:AAD08457 psi-mi:rs16_helpy(display_long)|uniprotkb:rpsP(gene name)|psi-mi:rpsP(display_short)|uniprotkb:HP_1151(locus name) psi-mi:o25960_helpy(display_long)|uniprotkb:rsfS(gene name)|psi-mi:rsfS(display_short)|uniprotkb:HP_1414(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327247|imex:IM-22256-586 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000216125.1|interpro:IPR000307(Ribosomal protein S16)|interpro:IPR020592|interpro:IPR023803|refseq:NP_207942.1|ensemblbacteria:AAD08199(transcript)|ensemblbacteria:HP_1151(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|uniprotkb:P56023(identity) dip:DIP-3272N|refseq:NP_208205.1|ensemblbacteria:AAD08457(transcript)|ensemblbacteria:HP_1414(gene)|go:"GO:0005737"(cytoplasm)|refseq:WP_001076151.1|go:"GO:0017148"(negative regulation of translation)|go:"GO:0042256"(mature ribosome assembly)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0090071"(negative regulation of ribosome biogenesis)|interpro:IPR004394(Iojap-related protein)|interpro:IPR043519|mint:O25960|uniprotkb:O25960(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4ImMTFlzi1XOCiHcleq79EByZXw85962 rogid:D81Qev7q3yhulo8xGNT2sEgMAVc85962 intact-crc:CBD7E7CC0DD0875F|rigid:dFTnHYMnE9Lsw99HF1rS0wULskY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25113 uniprotkb:O25977 intact:EBI-7633054|ensemblbacteria:AAD07417|intact:MINT-187451 intact:EBI-9269569|ensemblbacteria:AAD08488 psi-mi:o25113_helpy(display_long)|uniprotkb:HP_0346(locus name) psi-mi:o25977_helpy(display_long)|uniprotkb:HP_1436(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327337|imex:IM-22256-591 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07417(transcript)|ensemblbacteria:HP_0346(gene)|mint:O25113|refseq:WP_010875469.1|dip:DIP-3740N|uniprotkb:O25113(identity) refseq:WP_000752241.1|refseq:NP_208227.1|ensemblbacteria:AAD08488(transcript)|ensemblbacteria:HP_1436(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25977(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3tDHTPf4i6qTBg5T+5R4VwGUUfo85962 rogid:asDQw+I1gBssfUnTfbXiD7JOdoQ85962 intact-crc:B8815AF14D337ED1|rigid:LdzMFhprIy0Ce2hI6+ojkgGnDzc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25310 uniprotkb:O25973 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-9269536|ensemblbacteria:AAD08472 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:o25973_helpy(display_long)|uniprotkb:HP_1432(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327319|imex:IM-22256-590 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) ensemblbacteria:AAD08472(transcript)|ensemblbacteria:HP_1432(gene)|uniprotkb:O25973(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:9uP29y2h7JQb8+dUIheaS1MSjnI85962 intact-crc:70232D5727FFC803|rigid:sSbuqFKtTLniGQZ5EScVXP/+sP4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25107 uniprotkb:O25973 intact:EBI-7553265|intact:MINT-159417|ensemblbacteria:AAD07412 intact:EBI-9269536|ensemblbacteria:AAD08472 psi-mi:o25107_helpy(display_long)|uniprotkb:HP_0340(locus name) psi-mi:o25973_helpy(display_long)|uniprotkb:HP_1432(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327301|imex:IM-22256-589 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862993.1|mint:O25107|refseq:NP_207138.1|ensemblbacteria:AAD07412(transcript)|ensemblbacteria:HP_0340(gene)|dip:DIP-3383N|uniprotkb:O25107(identity) ensemblbacteria:AAD08472(transcript)|ensemblbacteria:HP_1432(gene)|uniprotkb:O25973(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:l306qPaaVQ2ZZA8klkmT8i0osH485962 rogid:9uP29y2h7JQb8+dUIheaS1MSjnI85962 intact-crc:C5D18C318D3FCEA9|rigid:vQPXQKsic9dHK90YC3zeBrLYMko false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25979 uniprotkb:O25664 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327391|imex:IM-22256-594 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:30273FB75F068157|rigid:9SztTwthlDX/GbgTYjplVkDrrrQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25979 uniprotkb:O25185 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-7556532|intact:MINT-166764|ensemblbacteria:AAD07506 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:o25185_helpy(display_long)|uniprotkb:HP_0435(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327373|imex:IM-22256-593 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) mint:O25185|ensemblbacteria:AAD07506(transcript)|ensemblbacteria:HP_0435(gene)|go:"GO:0004386"(helicase activity)|interpro:IPR041677|interpro:IPR027417|dip:DIP-3394N|uniprotkb:O25185(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:Wo8lRDnMrBLGNLrCPjLFcu6Aemc85962 intact-crc:B864F11CD1EB3AD9|rigid:wlt5oy4LwU5IGoiNjxysrcQYtFI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25979 uniprotkb:O06914 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327355|imex:IM-22256-592 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:2EE225221570CFCC|rigid:OkrrryzJ6xkioAvFCx7Sqmhy6DY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25933 uniprotkb:O25979 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327445|imex:IM-22256-597 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 intact-crc:26A450539D1FF595|rigid:+Ag4t6A0SdDsvYdr9LU+YB/yb/I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:O25979 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327427|imex:IM-22256-596 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 intact-crc:B2C00833EFE725E7|rigid:h0V13uwt76yvmV1U++WpcV1hTT4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25766 uniprotkb:O25979 intact:EBI-7612675|intact:MINT-179982|ensemblbacteria:AAD08192 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 psi-mi:trmd_helpy(display_long)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short)|uniprotkb:HP_1148(locus name)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym) psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327409|imex:IM-22256-595 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25766|refseq:WP_000672977.1|refseq:NP_207939.1|ensemblbacteria:AAD08192(transcript)|ensemblbacteria:HP_1148(gene)|go:"GO:0002939"(tRNA N1-guanine methylation)|go:"GO:0005829"(cytosol)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR023148|interpro:IPR029026|interpro:IPR029028|dip:DIP-3681N|uniprotkb:O25766(identity) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Specifically methylates guanosine-37 in various tRNAs comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O9rQL0es2QZVKJFFGMJtNv3l0gE85962 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 intact-crc:508D760C304F8A38|rigid:8r4WinP8Z/DA8PyAiuBsbmk4qR0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25122 uniprotkb:O25981 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-9269707|ensemblbacteria:AAD08487 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:o25981_helpy(display_long)|uniprotkb:HP_1440(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327499|imex:IM-22256-600 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) refseq:WP_000896371.1|refseq:NP_208231.1|ensemblbacteria:AAD08487(transcript)|ensemblbacteria:HP_1440(gene)|uniprotkb:O25981(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:Lzi/60o/XDyGgtCSU0eN1eu30GM85962 intact-crc:E14E87328D93C8C0|rigid:J22yITtkxOtPjNo52vzCn7KepHw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25979 uniprotkb:Q9ZN16 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327481|imex:IM-22256-599 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:11A120DF63BE71C9|rigid:wPlXOROhRzPtCvRmYZFu9DjJUcU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25979 uniprotkb:Q9ZKJ9 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327463|imex:IM-22256-598 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:8CD9B824310EB0B9|rigid:unfCvmBahjJIs1z0JN3M/Qmbms0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25996 uniprotkb:Q9ZKK8 intact:EBI-7520993|intact:MINT-169998|ensemblbacteria:AAD08500 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25996_helpy(display_long)|uniprotkb:HP_1458(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327553|imex:IM-22256-603 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25996|refseq:WP_001293258.1|refseq:NP_208249.1|ensemblbacteria:AAD08500(transcript)|ensemblbacteria:HP_1458(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0015035"(protein-disulfide reductase activity)|go:"GO:0045454"(cell redox homeostasis)|go:"GO:0047134"("protein-disulfide reductase (NAD(P)) activity")|interpro:IPR013766(Thioredoxin domain)|interpro:IPR036249|go:"GO:0016671"(oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor)|dip:DIP-3185N|uniprotkb:O25996(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7Kh9yi6ODVI5J9tirkODlnLHSZQ85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:41C4000A08ACAC32|rigid:L4mCXf2TlpAs8LxOoMdeRPH8/v0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56120 uniprotkb:O25996 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-7520993|intact:MINT-169998|ensemblbacteria:AAD08500 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:o25996_helpy(display_long)|uniprotkb:HP_1458(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327535|imex:IM-22256-602 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) mint:O25996|refseq:WP_001293258.1|refseq:NP_208249.1|ensemblbacteria:AAD08500(transcript)|ensemblbacteria:HP_1458(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0015035"(protein-disulfide reductase activity)|go:"GO:0045454"(cell redox homeostasis)|go:"GO:0047134"("protein-disulfide reductase (NAD(P)) activity")|interpro:IPR013766(Thioredoxin domain)|interpro:IPR036249|go:"GO:0016671"(oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor)|dip:DIP-3185N|uniprotkb:O25996(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:7Kh9yi6ODVI5J9tirkODlnLHSZQ85962 intact-crc:32766A4DD0C8365E|rigid:DsJyFAXHty9QdIPYLPIl6cPaFFM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25768 uniprotkb:O25990 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327517|imex:IM-22256-601 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:6B57A9A41A44CCE5|rigid:XVAZsLE6lBVgfoK6QgSsSdFXSPk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26000 uniprotkb:O24918 intact:EBI-7606425|intact:MINT-162293|ensemblbacteria:AAD08505 intact:EBI-9260804|ensemblbacteria:AAD07163 psi-mi:o26000_helpy(display_long)|uniprotkb:HP_1464(locus name) psi-mi:o24918_helpy(display_long)|uniprotkb:HP_0092(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327607|imex:IM-22256-606 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000439508.1|mint:O26000|refseq:NP_208255.1|ensemblbacteria:AAD08505(transcript)|ensemblbacteria:HP_1464(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR003399(Mammalian cell entry related)|dip:DIP-3574N|uniprotkb:O26000(identity) refseq:WP_000233875.1|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_206892.1|interpro:IPR029063|ensemblbacteria:AAD07163(transcript)|ensemblbacteria:HP_0092(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|uniprotkb:O24918(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ZFFQ6z4Q+5DVw79sncMQE0Mo4pU85962 rogid:Wwha5GNvSIX5Q97QjPA0nAthydM85962 intact-crc:7CB15FC0088D085D|rigid:/redv7F9XtPzq24Eyhl1FDnCb24 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25186 uniprotkb:O25999 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9269770|ensemblbacteria:AAD08508 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o25999_helpy(display_long)|uniprotkb:HP_1463(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327589|imex:IM-22256-605 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) refseq:WP_001202825.1|refseq:NP_208254.1|ensemblbacteria:AAD08508(transcript)|ensemblbacteria:HP_1463(gene)|uniprotkb:O25999(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:vnqTi4rhhwbuKNj4secKJfolRnI85962 intact-crc:BAF868A87C7C1DDD|rigid:vxBfdX8WvamdgQc1XT9+loiKD98 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O25999 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9269770|ensemblbacteria:AAD08508 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o25999_helpy(display_long)|uniprotkb:HP_1463(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327571|imex:IM-22256-604 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_001202825.1|refseq:NP_208254.1|ensemblbacteria:AAD08508(transcript)|ensemblbacteria:HP_1463(gene)|uniprotkb:O25999(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:vnqTi4rhhwbuKNj4secKJfolRnI85962 intact-crc:F344F400420005E3|rigid:4J3HXTTlr30iiTnFTBGHrAvxmkg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56462 uniprotkb:O26012 intact:EBI-7505292|intact:MINT-164654|ensemblbacteria:AAD07973 intact:EBI-9269854|ensemblbacteria:AAD08529 psi-mi:gch1_helpy(display_long)|uniprotkb:folE(gene name)|psi-mi:folE(display_short)|uniprotkb:HP_0928(locus name)|uniprotkb:GTP cyclohydrolase I(gene name synonym) psi-mi:o26012_helpy(display_long)|uniprotkb:HP_1477(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327661|imex:IM-22256-609 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56462|refseq:WP_000427004.1|refseq:NP_207720.1|go:"GO:0008270"(zinc ion binding)|go:"GO:0035998"(7,8-dihydroneopterin 3'-triphosphate biosynthetic process)|go:"GO:0046654"(tetrahydrofolate biosynthetic process)|interpro:IPR001474(GTP cyclohydrolase I)|interpro:IPR018234|interpro:IPR020602|interpro:IPR043133|interpro:IPR043134|ensemblbacteria:AAD07973(transcript)|ensemblbacteria:HP_0928(gene)|go:"GO:0003934"(GTP cyclohydrolase I activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006729"(tetrahydrobiopterin biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|dip:DIP-3586N|uniprotkb:P56462(identity) refseq:WP_000697639.1|interpro:IPR017585(Flagella basal body P-ring formation protein FlgA)|refseq:NP_208268.1|interpro:IPR039246|ensemblbacteria:AAD08529(transcript)|ensemblbacteria:HP_1477(gene)|go:"GO:0042597"(periplasmic space)|go:"GO:0044780"(bacterial-type flagellum assembly)|uniprotkb:O26012(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JNWwOUF1bUepzK0YVn3ctvDZiY885962 rogid:QGCBk4iiPAayS1W7MrgojbE7bsc85962 intact-crc:75CD6A18BCC116DA|rigid:WM4HoltkIs/WvKsE7mkJdV69uNk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26011 uniprotkb:O26011 intact:EBI-9269833|ensemblbacteria:AAD08515 intact:EBI-9269833|ensemblbacteria:AAD08515 psi-mi:ubix_helpy(display_long)|uniprotkb:ubiX(gene name)|psi-mi:ubiX(display_short)|uniprotkb:HP_1476(locus name) psi-mi:ubix_helpy(display_long)|uniprotkb:ubiX(gene name)|psi-mi:ubiX(display_short)|uniprotkb:HP_1476(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327643|imex:IM-22256-608 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000780126.1|interpro:IPR036551|interpro:IPR003382(Flavoprotein)|interpro:IPR004507(Phenylacrylic acid decarboxylase)|refseq:NP_208267.1|ensemblbacteria:AAD08515(transcript)|ensemblbacteria:HP_1476(gene)|go:"GO:0016831"(carboxy-lyase activity)|go:"GO:0106141"(flavin prenyltransferase activity)|uniprotkb:O26011(identity) refseq:WP_000780126.1|interpro:IPR036551|interpro:IPR003382(Flavoprotein)|interpro:IPR004507(Phenylacrylic acid decarboxylase)|refseq:NP_208267.1|ensemblbacteria:AAD08515(transcript)|ensemblbacteria:HP_1476(gene)|go:"GO:0016831"(carboxy-lyase activity)|go:"GO:0106141"(flavin prenyltransferase activity)|uniprotkb:O26011(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JaAc8pfPBGR5+UrxrxNZ0PSKeE085962 rogid:JaAc8pfPBGR5+UrxrxNZ0PSKeE085962 intact-crc:CCD4B86A74CC95BF|rigid:Ettj+LEyMJi95cY1Fw6tb8194jQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26007 uniprotkb:O25423 intact:EBI-7501758|intact:MINT-178286|ensemblbacteria:AAD08512 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o26007_helpy(display_long)|uniprotkb:HP_1472(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327625|imex:IM-22256-607 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26007|refseq:WP_001045361.1|refseq:NP_208263.1|ensemblbacteria:AAD08512(transcript)|ensemblbacteria:HP_1472(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004518"(nuclease activity)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR014883(VRR-NUC)|interpro:IPR029063|dip:DIP-3648N|uniprotkb:O26007(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kHm/mrEtQyrL05Zg3I0cx3BlH/E85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:38DA7DEB8E9407A1|rigid:1KzbyczOH+iER1jm6Fs6jQI/ekU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:O25288 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9269903|ensemblbacteria:AAD07634 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o25288_helpy(display_long)|uniprotkb:HP_0564(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327715|imex:IM-22256-612 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) interpro:IPR031895|interpro:IPR010985(Ribbon-helix-helix)|interpro:IPR013321(Arc-type ribbon-helix-helix)|ensemblbacteria:AAD07634(transcript)|ensemblbacteria:HP_0564(gene)|go:"GO:0006355"(regulation of transcription, DNA-templated)|uniprotkb:O25288(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:FFpkeLw5rxnItz7SIWi8lwSvMKY85962 intact-crc:6C3227255CC75BC1|rigid:XL9fbA3k70/Gn7I1oOcr3cx5Ye0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:O25193 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9268368|ensemblbacteria:AAD07521 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o25193_helpy(display_long)|uniprotkb:HP_0445(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327697|imex:IM-22256-611 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) ensemblbacteria:AAD07521(transcript)|ensemblbacteria:HP_0445(gene)|uniprotkb:O25193(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:MA06LY47GdRMwnyLuB4R6iCKeyA85962 intact-crc:7C8F892B5ED885C3|rigid:2g6xKKVT5q1LuIH8LpIosiQw0QU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:O24987 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-7530990|intact:MINT-159439|ensemblbacteria:AAD07265 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o24987_helpy(display_long)|uniprotkb:HP_0187(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327679|imex:IM-22256-610 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) mint:O24987|ensemblbacteria:AAD07265(transcript)|ensemblbacteria:HP_0187(gene)|interpro:IPR004919(Protein of unknown function DUF262)|dip:DIP-3267N|uniprotkb:O24987(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:P1CE5ru6kMhgydYCXgBtjOw6mhw85962 intact-crc:9B8237AEF17680DC|rigid:jX/D0Jgwli2KonAumsGdkY58mBQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:O25700 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9269936|ensemblbacteria:AAD08110 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:tatb_helpy(display_long)|uniprotkb:tatB(gene name)|psi-mi:tatB(display_short)|uniprotkb:HP_1060(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327751|imex:IM-22256-614 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) refseq:WP_000467616.1|interpro:IPR018448|refseq:NP_207851.1|ensemblbacteria:AAD08110(transcript)|ensemblbacteria:HP_1060(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0008320"(protein transmembrane transporter activity)|go:"GO:0033281"(TAT protein transport complex)|go:"GO:0043953"(protein transport by the Tat complex)|uniprotkb:O25700(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:G9wfOTW7h3fGv2n3FF4BCwjZq1o85962 intact-crc:140CFDF0D69FFE4B|rigid:qaoZF5X8VfxFudgyoQWs5U4UCtA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25592 uniprotkb:O26016 intact:EBI-7598036|intact:MINT-162023|ensemblbacteria:AAD07991 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 psi-mi:o25592_helpy(display_long)|uniprotkb:HP_0938(locus name) psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327733|imex:IM-22256-613 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25592|refseq:WP_001862937.1|refseq:NP_207730.1|ensemblbacteria:AAD07991(transcript)|ensemblbacteria:HP_0938(gene)|interpro:IPR004919(Protein of unknown function DUF262)|dip:DIP-3591N|uniprotkb:O25592(identity) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) psi-mi:"MI:0469"(intact) comment:mint function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ge8BhFYAGSLIpx+GRPzWkRXRKgQ85962 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 intact-crc:3132F27CC7A1125A|rigid:l40QgiaP87NpgSo6/AS0INvr9Fg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:Q9ZKV6 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9269982|ensemblbacteria:AAD06406 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:q9zkv6_helpj(display_long)|uniprotkb:jhp_0829(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327805|imex:IM-22256-617 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) ensemblbacteria:AAD06406(transcript)|ensemblbacteria:jhp_0829(gene)|uniprotkb:Q9ZKV6(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:PmSoJZhuDkthv65Gq30HtYlHvTA85963 intact-crc:857C9BC0D8E77769|rigid:UHO6lw9B/zPlOhakXcDLNgsEI+U false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34754 uniprotkb:O26016 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327787|imex:IM-22256-616 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) psi-mi:"MI:0469"(intact) comment:mint function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 intact-crc:629BD78295FDECFE|rigid:YL/ExGtpRBLl5XBKIshsVv3X0aM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:O25790 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9261675|ensemblbacteria:AAD08226 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327769|imex:IM-22256-615 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 intact-crc:24B3E9AD6CBBA3F1|rigid:iCC2iGKbNC/yY92o7CvEqzSg1hQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O26022 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-7501863|intact:MINT-160847|ensemblbacteria:AAD08524 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o26022_helpy(display_long)|uniprotkb:HP_1489(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327859|imex:IM-22256-620 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) mint:O26022|refseq:WP_000753982.1|refseq:NP_208280.1|ensemblbacteria:AAD08524(transcript)|ensemblbacteria:HP_1489(gene)|go:"GO:0015288"(porin activity)|go:"GO:0015562"(efflux transmembrane transporter activity)|go:"GO:1990281"(efflux pump complex)|interpro:IPR003423(Outer membrane efflux protein)|dip:DIP-3153N|uniprotkb:O26022(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:DvGEoICc+QP5VAo9hv9nY0itK+E85962 intact-crc:577B9B5602CF0B83|rigid:GB0Xb4qapfSVRc4xdeMXJEuNGh0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25938 uniprotkb:O26018 intact:EBI-9266908|ensemblbacteria:AAD08430 intact:EBI-9270018|ensemblbacteria:AAD08519 psi-mi:o25938_helpy(display_long)|uniprotkb:HP_1388(locus name) psi-mi:hemj_helpy(display_long)|uniprotkb:HP_1484(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327841|imex:IM-22256-619 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862625.1|refseq:NP_208179.1|ensemblbacteria:AAD08430(transcript)|ensemblbacteria:HP_1388(gene)|uniprotkb:O25938(identity) refseq:WP_000506456.1|interpro:IPR005265(Uncharacterised protein family UPF0093)|refseq:NP_208275.1|ensemblbacteria:AAD08519(transcript)|ensemblbacteria:HP_1484(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0070818"(protoporphyrinogen oxidase activity)|uniprotkb:O26018(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lD4BCbeqG3Vu7n2+k431kkKoWTU85962 rogid:p7yAXvUlR1A3xOi0byvFyzCN/pw85962 intact-crc:B7836BB0F29C37FB|rigid:A2QiSB258P//5OhzsIux37JpLms false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:Q9ZMH3 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9265592|ensemblbacteria:AAD05823 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:q9zmh3_helpj(display_long)|uniprotkb:jhp_0247(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327823|imex:IM-22256-618 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) refseq:WP_010882505.1|interpro:IPR041551|ensemblbacteria:AAD05823(transcript)|ensemblbacteria:jhp_0247(gene)|uniprotkb:Q9ZMH3(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:bBvE/oCHqYoN/0oAcM3TD1stXro85963 intact-crc:DE24044990FF133B|rigid:qQKk+rlemgnsczaCby5LnU8W27g false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0X4 uniprotkb:O26023 intact:EBI-7607319|uniprotkb:P56019|uniprotkb:Q9R787|intact:MINT-160916|ensemblbacteria:AAD08241 intact:EBI-7513993|intact:MINT-159596|ensemblbacteria:AAD08525 psi-mi:rs12_helpy(display_long)|uniprotkb:rpsL(gene name)|psi-mi:rpsL(display_short)|uniprotkb:HP_1197(locus name) psi-mi:o26023_helpy(display_long)|uniprotkb:HP_1490(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327895|imex:IM-22256-622 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001142321.1|interpro:IPR005679(Ribosomal protein S12, bacterial-type)|interpro:IPR006032(Ribosomal protein S12/S23)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|mint:P0A0X4|refseq:NP_207988.1|ensemblbacteria:AAD08241(transcript)|ensemblbacteria:HP_1197(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0046677"(response to antibiotic)|uniprotkb:P0A0X4(identity) mint:O26023|refseq:WP_000533332.1|refseq:NP_208281.1|ensemblbacteria:AAD08525(transcript)|ensemblbacteria:HP_1490(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR002550(Protein of unknown function DUF21)|interpro:IPR005170(Transporter-associated region)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR036318|interpro:IPR044751|dip:DIP-3088N|uniprotkb:O26023(identity) psi-mi:"MI:0469"(intact) function:With S4 and S5 plays an important role in translational accuracy|comment:mint|function:Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nGLO1EcHlMoe/ASWRqCunOgMDOo85962 rogid:eeKp4WDSyic/8gFz1UlOWVWQ+IY85962 intact-crc:BF576B3DC386D16B|rigid:6GR95CX3wa7zeCU5MdsvaXwAd1Q false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26023 uniprotkb:O25773 intact:EBI-7513993|intact:MINT-159596|ensemblbacteria:AAD08525 intact:EBI-7690257|ensemblbacteria:AAD08197|intact:MINT-160980 psi-mi:o26023_helpy(display_long)|uniprotkb:HP_1490(locus name) psi-mi:p5cr_helpy(display_long)|uniprotkb:proC(gene name)|psi-mi:proC(display_short)|uniprotkb:PCA reductase(gene name synonym)|uniprotkb:HP_1158(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327877|imex:IM-22256-621 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26023|refseq:WP_000533332.1|refseq:NP_208281.1|ensemblbacteria:AAD08525(transcript)|ensemblbacteria:HP_1490(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR002550(Protein of unknown function DUF21)|interpro:IPR005170(Transporter-associated region)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR036318|interpro:IPR044751|dip:DIP-3088N|uniprotkb:O26023(identity) refseq:WP_000404448.1|ensemblbacteria:AAD08197(transcript)|ensemblbacteria:HP_1158(gene)|go:"GO:0004735"(pyrroline-5-carboxylate reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0055129"(L-proline biosynthetic process)|interpro:IPR000304(Delta 1-pyrroline-5-carboxylate reductase)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR028939|interpro:IPR029036|interpro:IPR036291|mint:O25773|refseq:NP_207949.1|dip:DIP-3659N|uniprotkb:O25773(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:eeKp4WDSyic/8gFz1UlOWVWQ+IY85962 rogid:UeRWyahuC3biYSO4AHvg01hoT3Y85962 intact-crc:DE933DE33536F29A|rigid:I4dWJZd4/Lo/XkqqMy3I32wOnEU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26024 uniprotkb:O25990 intact:EBI-9270078|ensemblbacteria:AAD08533 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:y1491_helpy(display_long)|uniprotkb:HP_1491(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327931|imex:IM-22256-624 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000403632.1|interpro:IPR001204(Phosphate transporter)|refseq:NP_208282.1|ensemblbacteria:AAD08533(transcript)|ensemblbacteria:HP_1491(gene)|go:"GO:0005315"(inorganic phosphate transmembrane transporter activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0035435"(phosphate ion transmembrane transport)|uniprotkb:O26024(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ETErnPoiUdxeLhY89j0p9g+R7pc85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:DB08E84A635CAF06|rigid:BubNGhp89NP2XzS+LNsnuCSNaVQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25678 uniprotkb:O26024 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9270078|ensemblbacteria:AAD08533 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:y1491_helpy(display_long)|uniprotkb:HP_1491(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327913|imex:IM-22256-623 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_000403632.1|interpro:IPR001204(Phosphate transporter)|refseq:NP_208282.1|ensemblbacteria:AAD08533(transcript)|ensemblbacteria:HP_1491(gene)|go:"GO:0005315"(inorganic phosphate transmembrane transporter activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0035435"(phosphate ion transmembrane transport)|uniprotkb:O26024(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:ETErnPoiUdxeLhY89j0p9g+R7pc85962 intact-crc:6B690A69D7981CB2|rigid:AqKjJcjcsk2P4NgS1Ov+1dWdOdA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26027 uniprotkb:O25851 intact:EBI-9270130|ensemblbacteria:AAD08535 intact:EBI-9270126|ensemblbacteria:AAD08307 psi-mi:mure_helpy(display_long)|uniprotkb:murE(gene name)|psi-mi:murE(display_short)|uniprotkb:Meso-A2pm-adding enzyme(gene name synonym)|uniprotkb:Meso-diaminopimelate-adding enzyme(gene name synonym)|uniprotkb:"UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase"(gene name synonym)|uniprotkb:UDP-MurNAc-tripeptide synthetase(gene name synonym)|uniprotkb:UDP-N-acetylmuramyl-tripeptide synthetase(gene name synonym)|uniprotkb:HP_1494(locus name) psi-mi:nuob_helpy(display_long)|uniprotkb:nuoB(gene name)|psi-mi:nuoB(display_short)|uniprotkb:NADH dehydrogenase I subunit B(gene name synonym)|uniprotkb:NDH-1 subunit B(gene name synonym)|uniprotkb:HP_1261(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327967|imex:IM-22256-626 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000768790.1|interpro:IPR036565|interpro:IPR036615|interpro:IPR004101(Mur ligase, C-terminal)|interpro:IPR005761(UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase)|interpro:IPR013221(Mur ligase, central)|interpro:IPR018109|refseq:NP_208285.1|ensemblbacteria:AAD08535(transcript)|ensemblbacteria:HP_1494(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004326"(tetrahydrofolylpolyglutamate synthase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008765"(UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|uniprotkb:O26027(identity) refseq:WP_001183511.1|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006138("NADH dehydrogenase (ubiquinone), 20 kDa subunit")|refseq:NP_208053.1|ensemblbacteria:AAD08307(transcript)|ensemblbacteria:HP_1261(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0009060"(aerobic respiration)|go:"GO:0015990"(electron transport coupled proton transport)|go:"GO:0045272"(plasma membrane respiratory chain complex I)|go:"GO:0048038"(quinone binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|uniprotkb:O25851(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:FRvv4eE0Htbd7w8ETg/WSPdT49085962 rogid:kwP/ZWXegkgrzAIMoHpJw9eC34M85962 intact-crc:9DC0C28106157011|rigid:PnX9daHJXJKMz+hasqVWqNLP5N0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26023 uniprotkb:O26024 intact:EBI-7513993|intact:MINT-159596|ensemblbacteria:AAD08525 intact:EBI-9270078|ensemblbacteria:AAD08533 psi-mi:o26023_helpy(display_long)|uniprotkb:HP_1490(locus name) psi-mi:y1491_helpy(display_long)|uniprotkb:HP_1491(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327949|imex:IM-22256-625 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26023|refseq:WP_000533332.1|refseq:NP_208281.1|ensemblbacteria:AAD08525(transcript)|ensemblbacteria:HP_1490(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR002550(Protein of unknown function DUF21)|interpro:IPR005170(Transporter-associated region)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR036318|interpro:IPR044751|dip:DIP-3088N|uniprotkb:O26023(identity) refseq:WP_000403632.1|interpro:IPR001204(Phosphate transporter)|refseq:NP_208282.1|ensemblbacteria:AAD08533(transcript)|ensemblbacteria:HP_1491(gene)|go:"GO:0005315"(inorganic phosphate transmembrane transporter activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0035435"(phosphate ion transmembrane transport)|uniprotkb:O26024(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:eeKp4WDSyic/8gFz1UlOWVWQ+IY85962 rogid:ETErnPoiUdxeLhY89j0p9g+R7pc85962 intact-crc:2D24E085C9EE517C|rigid:2YA68XD5ScwktFz6W9D1L8Sp6zM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26033 uniprotkb:O25872 intact:EBI-7498734|intact:MINT-178933|ensemblbacteria:AAD08539 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o26033_helpy(display_long)|uniprotkb:HP_1503(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328003|imex:IM-22256-628 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26033|refseq:WP_000650233.1|refseq:NP_208294.1|ensemblbacteria:AAD08539(transcript)|ensemblbacteria:HP_1503(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0043682"(P-type divalent copper transporter activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001757(ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter)|interpro:IPR006121(Heavy metal transport/detoxification protein)|interpro:IPR008250(E1-E2 ATPase-associated region)|interpro:IPR018303|interpro:IPR021993|interpro:IPR023214|interpro:IPR023298|interpro:IPR023299|interpro:IPR027256|interpro:IPR036163|interpro:IPR036412|dip:DIP-3099N|uniprotkb:O26033(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ZZdeRxIWZLrGc1t1Aa/T9MJhCmc85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:EFF974A7983D88AB|rigid:s04JtfJ4/+oYqRNa7yMHaLfBlK8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26033 uniprotkb:O25678 intact:EBI-7498734|intact:MINT-178933|ensemblbacteria:AAD08539 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 psi-mi:o26033_helpy(display_long)|uniprotkb:HP_1503(locus name) psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9327985|imex:IM-22256-627 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26033|refseq:WP_000650233.1|refseq:NP_208294.1|ensemblbacteria:AAD08539(transcript)|ensemblbacteria:HP_1503(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0043682"(P-type divalent copper transporter activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001757(ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter)|interpro:IPR006121(Heavy metal transport/detoxification protein)|interpro:IPR008250(E1-E2 ATPase-associated region)|interpro:IPR018303|interpro:IPR021993|interpro:IPR023214|interpro:IPR023298|interpro:IPR023299|interpro:IPR027256|interpro:IPR036163|interpro:IPR036412|dip:DIP-3099N|uniprotkb:O26033(identity) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ZZdeRxIWZLrGc1t1Aa/T9MJhCmc85962 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 intact-crc:8FE738A99077A6A3|rigid:gLo7SMxl0YdPlj7MEELevfPWDtY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26033 uniprotkb:Q9ZKV7 intact:EBI-7498734|intact:MINT-178933|ensemblbacteria:AAD08539 intact:EBI-9269328|ensemblbacteria:AAD06405 psi-mi:o26033_helpy(display_long)|uniprotkb:HP_1503(locus name) psi-mi:q9zkv7_helpj(display_long)|uniprotkb:jhp_0828(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328039|imex:IM-22256-630 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26033|refseq:WP_000650233.1|refseq:NP_208294.1|ensemblbacteria:AAD08539(transcript)|ensemblbacteria:HP_1503(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0043682"(P-type divalent copper transporter activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001757(ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter)|interpro:IPR006121(Heavy metal transport/detoxification protein)|interpro:IPR008250(E1-E2 ATPase-associated region)|interpro:IPR018303|interpro:IPR021993|interpro:IPR023214|interpro:IPR023298|interpro:IPR023299|interpro:IPR027256|interpro:IPR036163|interpro:IPR036412|dip:DIP-3099N|uniprotkb:O26033(identity) refseq:WP_000917077.1|ensemblbacteria:AAD06405(transcript)|ensemblbacteria:jhp_0828(gene)|uniprotkb:Q9ZKV7(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ZZdeRxIWZLrGc1t1Aa/T9MJhCmc85962 rogid:32ur07LEjcTYTp1Bj4VFb/unpYo85963 intact-crc:469C005DDF627640|rigid:XefjTj8FifOzAzT+p02XdZoN0G0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26033 uniprotkb:O25990 intact:EBI-7498734|intact:MINT-178933|ensemblbacteria:AAD08539 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o26033_helpy(display_long)|uniprotkb:HP_1503(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328021|imex:IM-22256-629 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26033|refseq:WP_000650233.1|refseq:NP_208294.1|ensemblbacteria:AAD08539(transcript)|ensemblbacteria:HP_1503(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0043682"(P-type divalent copper transporter activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001757(ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter)|interpro:IPR006121(Heavy metal transport/detoxification protein)|interpro:IPR008250(E1-E2 ATPase-associated region)|interpro:IPR018303|interpro:IPR021993|interpro:IPR023214|interpro:IPR023298|interpro:IPR023299|interpro:IPR027256|interpro:IPR036163|interpro:IPR036412|dip:DIP-3099N|uniprotkb:O26033(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ZZdeRxIWZLrGc1t1Aa/T9MJhCmc85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:3F840A8A24B31517|rigid:FPJDDE2eTaG79AnStcEYYFP+RmM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25310 uniprotkb:O26034 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-9270212|ensemblbacteria:AAD08540 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:o26034_helpy(display_long)|uniprotkb:HP_1504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328075|imex:IM-22256-632 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) refseq:WP_000375247.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR007848(Methyltransferase small)|refseq:NP_208295.1|interpro:IPR029063|ensemblbacteria:AAD08540(transcript)|ensemblbacteria:HP_1504(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|uniprotkb:O26034(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:R1w4/PZ85EWwDASCAT59chQN8c485962 intact-crc:ED4AF6616052CA99|rigid:3MLWU/PtDnMdCWVgTIJlzShGKTM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26034 uniprotkb:O06914 intact:EBI-9270212|ensemblbacteria:AAD08540 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o26034_helpy(display_long)|uniprotkb:HP_1504(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328057|imex:IM-22256-631 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000375247.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR007848(Methyltransferase small)|refseq:NP_208295.1|interpro:IPR029063|ensemblbacteria:AAD08540(transcript)|ensemblbacteria:HP_1504(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|uniprotkb:O26034(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:R1w4/PZ85EWwDASCAT59chQN8c485962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:E40336BA563CBA7E|rigid:Vw3yd0ov5gOQ0H/gPsEkUQ0OC8k false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26034 uniprotkb:O26034 intact:EBI-9270212|ensemblbacteria:AAD08540 intact:EBI-9270212|ensemblbacteria:AAD08540 psi-mi:o26034_helpy(display_long)|uniprotkb:HP_1504(locus name) psi-mi:o26034_helpy(display_long)|uniprotkb:HP_1504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328111|imex:IM-22256-634 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000375247.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR007848(Methyltransferase small)|refseq:NP_208295.1|interpro:IPR029063|ensemblbacteria:AAD08540(transcript)|ensemblbacteria:HP_1504(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|uniprotkb:O26034(identity) refseq:WP_000375247.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR007848(Methyltransferase small)|refseq:NP_208295.1|interpro:IPR029063|ensemblbacteria:AAD08540(transcript)|ensemblbacteria:HP_1504(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|uniprotkb:O26034(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:R1w4/PZ85EWwDASCAT59chQN8c485962 rogid:R1w4/PZ85EWwDASCAT59chQN8c485962 intact-crc:21A08ED9F877979D|rigid:lQRwQtMUUcO0cl/PietwhrRiSxQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25692 uniprotkb:O26034 intact:EBI-7574216|intact:MINT-182315|ensemblbacteria:AAD08098 intact:EBI-9270212|ensemblbacteria:AAD08540 psi-mi:lpxc_helpy(display_long)|uniprotkb:lpxC(gene name)|psi-mi:lpxC(display_short)|uniprotkb:UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase(gene name synonym)|uniprotkb:HP_1052(locus name) psi-mi:o26034_helpy(display_long)|uniprotkb:HP_1504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328093|imex:IM-22256-633 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25692|refseq:WP_000815275.1|refseq:NP_207843.1|ensemblbacteria:AAD08098(transcript)|ensemblbacteria:HP_1052(gene)|go:"GO:0008759"(UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0103117"(UDP-3-O-acyl-N-acetylglucosamine deacetylase activity)|interpro:IPR004463(UDP-3-O-acyl N-acetylglucosamine deacetylase)|interpro:IPR011334(UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal)|interpro:IPR015870(UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal)|interpro:IPR020568|dip:DIP-3457N|uniprotkb:O25692(identity) refseq:WP_000375247.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR007848(Methyltransferase small)|refseq:NP_208295.1|interpro:IPR029063|ensemblbacteria:AAD08540(transcript)|ensemblbacteria:HP_1504(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|uniprotkb:O26034(identity) psi-mi:"MI:0469"(intact) function:Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Qtz7RUkn8lsaMXT9vhnsK4r3OIk85962 rogid:R1w4/PZ85EWwDASCAT59chQN8c485962 intact-crc:5808655D7493868D|rigid:cUOYG8Ikr+6CoSJkemQ0BhKG2hM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26040 uniprotkb:O25364 intact:EBI-7495634|intact:MINT-175534|ensemblbacteria:AAD08552 intact:EBI-9270287|ensemblbacteria:AAD07717 psi-mi:o26040_helpy(display_long)|uniprotkb:HP_1510(locus name) psi-mi:o25364_helpy(display_long)|uniprotkb:HP_0647(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328147|imex:IM-22256-636 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26040|refseq:NP_208301.1|ensemblbacteria:AAD08552(transcript)|ensemblbacteria:HP_1510(gene)|go:"GO:0004150"(dihydroneopterin aldolase activity)|go:"GO:0006760"(folic acid-containing compound metabolic process)|interpro:IPR006157(Dihydroneopterin aldolase)|interpro:IPR043133|refseq:WP_000850887.1|dip:DIP-3219N|uniprotkb:O26040(identity) refseq:WP_000527526.1|refseq:NP_207441.1|ensemblbacteria:AAD07717(transcript)|ensemblbacteria:HP_0647(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25364(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tvLIbivK/QWzaIpOIXn75wM3QtE85962 rogid:P9/+oLojeA/hG0oSjGJxN/nIV3Q85962 intact-crc:8EC4B3DA8C824819|rigid:rNaizNwT84GxEQ1c/wkwavmgGBE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26040 uniprotkb:O25018 intact:EBI-7495634|intact:MINT-175534|ensemblbacteria:AAD08552 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 psi-mi:o26040_helpy(display_long)|uniprotkb:HP_1510(locus name) psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328129|imex:IM-22256-635 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26040|refseq:NP_208301.1|ensemblbacteria:AAD08552(transcript)|ensemblbacteria:HP_1510(gene)|go:"GO:0004150"(dihydroneopterin aldolase activity)|go:"GO:0006760"(folic acid-containing compound metabolic process)|interpro:IPR006157(Dihydroneopterin aldolase)|interpro:IPR043133|refseq:WP_000850887.1|dip:DIP-3219N|uniprotkb:O26040(identity) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tvLIbivK/QWzaIpOIXn75wM3QtE85962 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 intact-crc:622E0335CA23775F|rigid:A30QQ/aBukZwP5d0+AwIICK0ooM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25482 uniprotkb:O26043 intact:EBI-7674271|ensemblbacteria:AAD07857|intact:MINT-169562 intact:EBI-7507533|intact:MINT-180006|ensemblbacteria:AAD08554 psi-mi:o25482_helpy(display_long)|uniprotkb:HP_0801(locus name) psi-mi:sela_helpy(display_long)|uniprotkb:selA(gene name)|psi-mi:selA(display_short)|uniprotkb:HP_1513(locus name)|uniprotkb:Selenocysteine synthase(gene name synonym)|uniprotkb:"Selenocysteinyl-tRNA(Sec) synthase"(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328183|imex:IM-22256-638 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07857(transcript)|ensemblbacteria:HP_0801(gene)|interpro:IPR003749(ThiamineS)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR016155(Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp)|rcsb pdb:3RPF|mint:O25482|refseq:NP_207594.1|refseq:WP_010875547.1|dip:DIP-3524N|uniprotkb:O25482(identity) mint:O26043|refseq:NP_208304.1|refseq:WP_001051152.1|ensemblbacteria:AAD08554(transcript)|ensemblbacteria:HP_1513(gene)|go:"GO:0001514"(selenocysteine incorporation)|go:"GO:0004125"(L-seryl-tRNASec selenium transferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0097056"("selenocysteinyl-tRNA(Sec) biosynthetic process")|interpro:IPR004534(L-seryl-tRNA selenium transferase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR018319|dip:DIP-3105N|uniprotkb:O26043(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:fdxTC9sTiVtTBwoqzH+Cpqj4Y0k85962 rogid:9vQNB1SR1cF/JMWuVd1g4Hmweg085962 intact-crc:A5376A2A1F8B0CF8|rigid:jKW+wj+vK7B+92+PISYoWsvblIk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26040 uniprotkb:Q9ZKV6 intact:EBI-7495634|intact:MINT-175534|ensemblbacteria:AAD08552 intact:EBI-9269982|ensemblbacteria:AAD06406 psi-mi:o26040_helpy(display_long)|uniprotkb:HP_1510(locus name) psi-mi:q9zkv6_helpj(display_long)|uniprotkb:jhp_0829(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328165|imex:IM-22256-637 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26040|refseq:NP_208301.1|ensemblbacteria:AAD08552(transcript)|ensemblbacteria:HP_1510(gene)|go:"GO:0004150"(dihydroneopterin aldolase activity)|go:"GO:0006760"(folic acid-containing compound metabolic process)|interpro:IPR006157(Dihydroneopterin aldolase)|interpro:IPR043133|refseq:WP_000850887.1|dip:DIP-3219N|uniprotkb:O26040(identity) ensemblbacteria:AAD06406(transcript)|ensemblbacteria:jhp_0829(gene)|uniprotkb:Q9ZKV6(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tvLIbivK/QWzaIpOIXn75wM3QtE85962 rogid:PmSoJZhuDkthv65Gq30HtYlHvTA85963 intact-crc:EC5FAC2B59A09CE8|rigid:fhtuXnNOxAUuBpic+rNP4626who false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26047 uniprotkb:O25676 intact:EBI-7639052|ensemblbacteria:AAD08559|intact:MINT-175273 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:o26047_helpy(display_long)|uniprotkb:HP_1518(locus name) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328219|imex:IM-22256-640 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08559(transcript)|ensemblbacteria:HP_1518(gene)|mint:O26047|refseq:WP_000617669.1|refseq:NP_208309.1|dip:DIP-3752N|uniprotkb:O26047(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7IXQGYsBd7MHXiMCSpSjo5t9EaM85962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:A17D17308BDD06D4|rigid:Q6jrqa4s2KSXyDWDcgkJuJYiOtE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26096 uniprotkb:O26045 intact:EBI-7576839|uniprotkb:O30552|intact:MINT-177552|ensemblbacteria:AAD08616 intact:EBI-9270338|ensemblbacteria:AAD08558 psi-mi:metn_helpy(display_long)|uniprotkb:HP_1576(locus name)|uniprotkb:metN(gene name)|psi-mi:metN(display_short) psi-mi:o26045_helpy(display_long)|uniprotkb:HP_1516(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328201|imex:IM-22256-639 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000259757.1|mint:O26096|refseq:NP_208367.1|ensemblbacteria:AAD08616(transcript)|ensemblbacteria:HP_1576(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0033232"(ABC-type D-methionine transporter activity)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR018449|interpro:IPR026253|interpro:IPR027417|interpro:IPR041701|dip:DIP-3488N|uniprotkb:O26096(identity) refseq:WP_000413023.1|refseq:NP_208307.1|ensemblbacteria:AAD08558(transcript)|ensemblbacteria:HP_1516(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O26045(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Part of the ABC transporter complex metNIQ involved in methionine import. Responsible for energy coupling to the transport system - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wgXDC2rSq0QFIrChBD1i/2W3khE85962 rogid:XUurlXLBGztUM0CmW1R7SbXqKuI85962 intact-crc:75BBF1C8021997E2|rigid:7X1bst7bOYFqxxXvdv9VvlR8Wkg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25892 uniprotkb:O26051 intact:EBI-7622732|intact:MINT-160946|ensemblbacteria:AAD08389 intact:EBI-7505188|intact:MINT-184313|ensemblbacteria:AAD08562 psi-mi:o25892_helpy(display_long)|uniprotkb:HP_1334(locus name) psi-mi:recg_helpy(display_long)|uniprotkb:HP_1523(locus name)|uniprotkb:recG(gene name)|psi-mi:recG(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328255|imex:IM-22256-642 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000039550.1|mint:O25892|refseq:NP_208126.1|ensemblbacteria:AAD08389(transcript)|ensemblbacteria:HP_1334(gene)|interpro:IPR021139|dip:DIP-3710N|uniprotkb:O25892(identity) mint:O26051|refseq:WP_001158370.1|refseq:NP_208313.1|ensemblbacteria:AAD08562(transcript)|ensemblbacteria:HP_1523(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|dip:DIP-3433N|uniprotkb:O26051(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched duplex DNA (Y-DNA)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UMCJI+TUn2n6f5WQKJOo9juf2eI85962 rogid:ke9bF4Ta0YAFbT/HTSSH7/DbyFI85962 intact-crc:C81E535585CCA5A2|rigid:c0z2o5rWQxtcquTkRoHWv34OJjk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26047 uniprotkb:Q9ZKJ9 intact:EBI-7639052|ensemblbacteria:AAD08559|intact:MINT-175273 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:o26047_helpy(display_long)|uniprotkb:HP_1518(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328237|imex:IM-22256-641 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08559(transcript)|ensemblbacteria:HP_1518(gene)|mint:O26047|refseq:WP_000617669.1|refseq:NP_208309.1|dip:DIP-3752N|uniprotkb:O26047(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7IXQGYsBd7MHXiMCSpSjo5t9EaM85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:FB0B0075925CD0CA|rigid:glqMh/Xhb+nUBDcxWZ7NhCIm/kE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26051 uniprotkb:O34995 intact:EBI-7505188|intact:MINT-184313|ensemblbacteria:AAD08562 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:recg_helpy(display_long)|uniprotkb:HP_1523(locus name)|uniprotkb:recG(gene name)|psi-mi:recG(display_short) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328291|imex:IM-22256-644 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26051|refseq:WP_001158370.1|refseq:NP_208313.1|ensemblbacteria:AAD08562(transcript)|ensemblbacteria:HP_1523(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|dip:DIP-3433N|uniprotkb:O26051(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched duplex DNA (Y-DNA)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ke9bF4Ta0YAFbT/HTSSH7/DbyFI85962 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:EB66E5F735651572|rigid:7Pajm+AawBX+v7Y6t4N0t69W6/s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26051 uniprotkb:O25940 intact:EBI-7505188|intact:MINT-184313|ensemblbacteria:AAD08562 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 psi-mi:recg_helpy(display_long)|uniprotkb:HP_1523(locus name)|uniprotkb:recG(gene name)|psi-mi:recG(display_short) psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328273|imex:IM-22256-643 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26051|refseq:WP_001158370.1|refseq:NP_208313.1|ensemblbacteria:AAD08562(transcript)|ensemblbacteria:HP_1523(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|dip:DIP-3433N|uniprotkb:O26051(identity) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched duplex DNA (Y-DNA)" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ke9bF4Ta0YAFbT/HTSSH7/DbyFI85962 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 intact-crc:E33147BC6AF8FC4D|rigid:Ak0vIn2gyitbwmdkNWBoZmMo73s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55977 uniprotkb:O26052 intact:EBI-7723667|ensemblbacteria:AAD08555|intact:MINT-4077929 intact:EBI-9268988|ensemblbacteria:AAD08566 psi-mi:nusa_helpy(display_long)|uniprotkb:nusA(gene name)|psi-mi:nusA(display_short)|uniprotkb:HP_1514(locus name) psi-mi:o26052_helpy(display_long)|uniprotkb:HP_1524(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328327|imex:IM-22256-646 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55977|ensemblbacteria:AAD08555(transcript)|ensemblbacteria:HP_1514(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0031564"(transcription antitermination)|interpro:IPR003029(S1, RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR010213(Transcription termination factor NusA)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013735(Transcription factor NusA, N-terminal)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR022967|interpro:IPR025249|interpro:IPR030842|interpro:IPR036555|refseq:WP_000411646.1|refseq:NP_208305.1|dip:DIP-3664N|uniprotkb:P55977(identity) refseq:WP_000837022.1|refseq:NP_208314.1|ensemblbacteria:AAD08566(transcript)|ensemblbacteria:HP_1524(gene)|uniprotkb:O26052(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RTwa+hy08+YPTH/PON5T0ltkljM85962 rogid:FhQuvCmIH5MakSYE97+ksGIN1BU85962 intact-crc:6F4C889C1244D8A3|rigid:B0UklA6YxJpU1Im+MikCKUosf0g false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26051 uniprotkb:Q9ZKJ9 intact:EBI-7505188|intact:MINT-184313|ensemblbacteria:AAD08562 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:recg_helpy(display_long)|uniprotkb:HP_1523(locus name)|uniprotkb:recG(gene name)|psi-mi:recG(display_short) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328309|imex:IM-22256-645 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26051|refseq:WP_001158370.1|refseq:NP_208313.1|ensemblbacteria:AAD08562(transcript)|ensemblbacteria:HP_1523(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|dip:DIP-3433N|uniprotkb:O26051(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched duplex DNA (Y-DNA)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ke9bF4Ta0YAFbT/HTSSH7/DbyFI85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:E9127E9129423471|rigid:BMkdvVQ4ixJdmoUxcuUe7tjAEyk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25773 uniprotkb:O26055 intact:EBI-7690257|ensemblbacteria:AAD08197|intact:MINT-160980 intact:EBI-7690242|ensemblbacteria:AAD08574|intact:MINT-167927 psi-mi:p5cr_helpy(display_long)|uniprotkb:proC(gene name)|psi-mi:proC(display_short)|uniprotkb:PCA reductase(gene name synonym)|uniprotkb:HP_1158(locus name) psi-mi:o26055_helpy(display_long)|uniprotkb:HP_1527(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328345|imex:IM-22256-647 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000404448.1|ensemblbacteria:AAD08197(transcript)|ensemblbacteria:HP_1158(gene)|go:"GO:0004735"(pyrroline-5-carboxylate reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0055129"(L-proline biosynthetic process)|interpro:IPR000304(Delta 1-pyrroline-5-carboxylate reductase)|interpro:IPR008927(6-phosphogluconate dehydrogenase, C-terminal-like)|interpro:IPR028939|interpro:IPR029036|interpro:IPR036291|mint:O25773|refseq:NP_207949.1|dip:DIP-3659N|uniprotkb:O25773(identity) refseq:WP_000749005.1|ensemblbacteria:AAD08574(transcript)|ensemblbacteria:HP_1527(gene)|mint:O26055|refseq:NP_208317.1|dip:DIP-3660N|uniprotkb:O26055(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UeRWyahuC3biYSO4AHvg01hoT3Y85962 rogid:jdd/8pTv/F2ImoonHit8ADEY3Ws85962 intact-crc:B46EC37542C065DD|rigid:Mk6432teOMudagtjyCsdDkwOta8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26057 uniprotkb:O25828 intact:EBI-527994|ensemblbacteria:AAD08568 intact:EBI-527984|ensemblbacteria:AAD08280 psi-mi:dnaa_helpy(display_long)|uniprotkb:dnaA(gene name)|psi-mi:dnaA(display_short)|uniprotkb:HP_1529(locus name) psi-mi:o25828_helpy(display_long)|uniprotkb:HP_1230(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328381|imex:IM-22256-649 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_208319.1|ensemblbacteria:AAD08568(transcript)|ensemblbacteria:HP_1529(gene)|go:"GO:0003688"(DNA replication origin binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005886"(plasma membrane)|go:"GO:0006260"(DNA replication)|go:"GO:0006270"(DNA replication initiation)|go:"GO:0006275"(regulation of DNA replication)|interpro:IPR001957(Bacterial chromosomal replication initiator protein, DnaA)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR010921(Trp repressor/replication initiator)|interpro:IPR013159(Chromosomal replication initiator, DnaA C-terminal)|interpro:IPR013317(Chromosomal replication initiator, DnaA)|interpro:IPR018312|interpro:IPR020591|interpro:IPR027417|interpro:IPR038454|rcsb pdb:2WP0|refseq:WP_000380647.1|dip:DIP-3596N|mint:O26057|uniprotkb:O26057(identity) refseq:NP_208022.1|ensemblbacteria:AAD08280(transcript)|ensemblbacteria:HP_1230(gene)|go:"GO:0042802"(identical protein binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR021011|interpro:IPR038381|rcsb pdb:2UVP|rcsb pdb:2WP0|refseq:WP_000788231.1|dip:DIP-3677N|mint:O25828|uniprotkb:O25828(identity) psi-mi:"MI:0469"(intact) crc64:975B30C9AB3A3C97 crc64:91FE4AE113B32E15 figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:s238UfVW+jYvRE9y2CH77UL4g7E85962 rogid:AyCnyZ9ycYx0T6cZKpyBiuPAlsY85962 intact-crc:3AC42A03C002BB03|rigid:Hfc1JCRGl0/lfyXwArZFZ7iRW84 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26055 uniprotkb:O25979 intact:EBI-7690242|ensemblbacteria:AAD08574|intact:MINT-167927 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 psi-mi:o26055_helpy(display_long)|uniprotkb:HP_1527(locus name) psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328363|imex:IM-22256-648 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000749005.1|ensemblbacteria:AAD08574(transcript)|ensemblbacteria:HP_1527(gene)|mint:O26055|refseq:NP_208317.1|dip:DIP-3660N|uniprotkb:O26055(identity) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jdd/8pTv/F2ImoonHit8ADEY3Ws85962 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 intact-crc:D4708F7B4A8A4BD5|rigid:T3cwx20oGmikStSj9n4fiCrmMwE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34754 uniprotkb:O26061 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7636355|ensemblbacteria:AAD08571|intact:MINT-160429 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:thyx_helpy(display_long)|uniprotkb:thyX(gene name)|psi-mi:thyX(display_short)|uniprotkb:FAD-dependent thymidylate synthase(gene name synonym)|uniprotkb:Thymidylate synthase ThyX(gene name synonym)|uniprotkb:HP_1533(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328417|imex:IM-22256-651 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) ensemblbacteria:AAD08571(transcript)|ensemblbacteria:HP_1533(gene)|go:"GO:0004799"(thymidylate synthase activity)|go:"GO:0006231"(dTMP biosynthetic process)|go:"GO:0006235"(dTTP biosynthetic process)|go:"GO:0032259"(methylation)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0050797"("thymidylate synthase (FAD) activity")|go:"GO:0070402"(NADPH binding)|rcsb pdb:3AH5|mint:O26061|interpro:IPR003669(Thymidylate synthase ThyX)|refseq:WP_000451918.1|interpro:IPR036098|refseq:NP_208323.1|uniprotkb:O26061(identity) psi-mi:"MI:0469"(intact) comment:mint function:Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:KrdxPXtOTel9a3RVmJHgDkLzRK885962 intact-crc:58003F201FD54E74|rigid:T33efcEL8KqGRAoTJusLF3sQbrU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26061 uniprotkb:O26061 intact:EBI-7636355|ensemblbacteria:AAD08571|intact:MINT-160429 intact:EBI-7636355|ensemblbacteria:AAD08571|intact:MINT-160429 psi-mi:thyx_helpy(display_long)|uniprotkb:thyX(gene name)|psi-mi:thyX(display_short)|uniprotkb:FAD-dependent thymidylate synthase(gene name synonym)|uniprotkb:Thymidylate synthase ThyX(gene name synonym)|uniprotkb:HP_1533(locus name) psi-mi:thyx_helpy(display_long)|uniprotkb:thyX(gene name)|psi-mi:thyX(display_short)|uniprotkb:FAD-dependent thymidylate synthase(gene name synonym)|uniprotkb:Thymidylate synthase ThyX(gene name synonym)|uniprotkb:HP_1533(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328399|imex:IM-22256-650 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08571(transcript)|ensemblbacteria:HP_1533(gene)|go:"GO:0004799"(thymidylate synthase activity)|go:"GO:0006231"(dTMP biosynthetic process)|go:"GO:0006235"(dTTP biosynthetic process)|go:"GO:0032259"(methylation)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0050797"("thymidylate synthase (FAD) activity")|go:"GO:0070402"(NADPH binding)|rcsb pdb:3AH5|mint:O26061|interpro:IPR003669(Thymidylate synthase ThyX)|refseq:WP_000451918.1|interpro:IPR036098|refseq:NP_208323.1|uniprotkb:O26061(identity) ensemblbacteria:AAD08571(transcript)|ensemblbacteria:HP_1533(gene)|go:"GO:0004799"(thymidylate synthase activity)|go:"GO:0006231"(dTMP biosynthetic process)|go:"GO:0006235"(dTTP biosynthetic process)|go:"GO:0032259"(methylation)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0050797"("thymidylate synthase (FAD) activity")|go:"GO:0070402"(NADPH binding)|rcsb pdb:3AH5|mint:O26061|interpro:IPR003669(Thymidylate synthase ThyX)|refseq:WP_000451918.1|interpro:IPR036098|refseq:NP_208323.1|uniprotkb:O26061(identity) psi-mi:"MI:0469"(intact) function:Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate|comment:mint function:Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate|comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KrdxPXtOTel9a3RVmJHgDkLzRK885962 rogid:KrdxPXtOTel9a3RVmJHgDkLzRK885962 intact-crc:E6D04AE540B95933|rigid:fXHEc5+Rv51Yw4lxx9FX9xTFs9s false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26061 uniprotkb:Q9ZN16 intact:EBI-7636355|ensemblbacteria:AAD08571|intact:MINT-160429 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:thyx_helpy(display_long)|uniprotkb:thyX(gene name)|psi-mi:thyX(display_short)|uniprotkb:FAD-dependent thymidylate synthase(gene name synonym)|uniprotkb:Thymidylate synthase ThyX(gene name synonym)|uniprotkb:HP_1533(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328453|imex:IM-22256-653 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08571(transcript)|ensemblbacteria:HP_1533(gene)|go:"GO:0004799"(thymidylate synthase activity)|go:"GO:0006231"(dTMP biosynthetic process)|go:"GO:0006235"(dTTP biosynthetic process)|go:"GO:0032259"(methylation)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0050797"("thymidylate synthase (FAD) activity")|go:"GO:0070402"(NADPH binding)|rcsb pdb:3AH5|mint:O26061|interpro:IPR003669(Thymidylate synthase ThyX)|refseq:WP_000451918.1|interpro:IPR036098|refseq:NP_208323.1|uniprotkb:O26061(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) function:Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KrdxPXtOTel9a3RVmJHgDkLzRK885962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:8F388CAE28483152|rigid:ZyIfYnnXbtiuOTzIPS5OfAysIV0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P48285 uniprotkb:O26061 intact:EBI-7508586|intact:MINT-179721|ensemblbacteria:AAD07219 intact:EBI-7636355|ensemblbacteria:AAD08571|intact:MINT-160429 psi-mi:eno_helpy(display_long)|uniprotkb:HP_0154(locus name)|uniprotkb:eno(gene name)|psi-mi:eno(display_short)|uniprotkb:2-phosphoglycerate dehydratase(gene name synonym)|uniprotkb:2-phospho-D-glycerate hydro-lyase(gene name synonym) psi-mi:thyx_helpy(display_long)|uniprotkb:thyX(gene name)|psi-mi:thyX(display_short)|uniprotkb:FAD-dependent thymidylate synthase(gene name synonym)|uniprotkb:Thymidylate synthase ThyX(gene name synonym)|uniprotkb:HP_1533(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328435|imex:IM-22256-652 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P48285|refseq:NP_206953.1|refseq:WP_000955673.1|ensemblbacteria:AAD07219(transcript)|ensemblbacteria:HP_0154(gene)|go:"GO:0000015"(phosphopyruvate hydratase complex)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004634"(phosphopyruvate hydratase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0006096"(glycolytic process)|go:"GO:0009986"(cell surface)|go:"GO:0032889"(regulation of vacuole fusion, non-autophagic)|interpro:IPR000941(Enolase)|interpro:IPR020809|interpro:IPR020810|interpro:IPR020811|interpro:IPR029017|interpro:IPR036849|dip:DIP-3344N|uniprotkb:P48285(identity) ensemblbacteria:AAD08571(transcript)|ensemblbacteria:HP_1533(gene)|go:"GO:0004799"(thymidylate synthase activity)|go:"GO:0006231"(dTMP biosynthetic process)|go:"GO:0006235"(dTTP biosynthetic process)|go:"GO:0032259"(methylation)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0050797"("thymidylate synthase (FAD) activity")|go:"GO:0070402"(NADPH binding)|rcsb pdb:3AH5|mint:O26061|interpro:IPR003669(Thymidylate synthase ThyX)|refseq:WP_000451918.1|interpro:IPR036098|refseq:NP_208323.1|uniprotkb:O26061(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis function:Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:SSQk7LoRu8rToUd9p4DF8rC0rZI85962 rogid:KrdxPXtOTel9a3RVmJHgDkLzRK885962 intact-crc:565133B12C4C0536|rigid:8H7ymPY/EhAUZ+bzlyJpCdXl4fU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26065 uniprotkb:P56124 intact:EBI-7666717|ensemblbacteria:AAD08580|intact:MINT-4074429 intact:EBI-7530222|intact:MINT-181432|ensemblbacteria:AAD07305 psi-mi:o26065_helpy(display_long)|uniprotkb:HP_1540(locus name) psi-mi:syp_helpy(display_long)|uniprotkb:proS(gene name)|psi-mi:proS(display_short)|uniprotkb:Prolyl-tRNA synthetase(gene name synonym)|uniprotkb:HP_0238(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328471|imex:IM-22256-654 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006311(Twin-arginine translocation pathway signal)|ensemblbacteria:AAD08580(transcript)|ensemblbacteria:HP_1540(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0022900"(electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:1902600"(proton transmembrane transport)|mint:O26065|refseq:WP_000763654.1|interpro:IPR014349(Rieske iron-sulphur protein)|interpro:IPR017941|refseq:NP_208331.1|interpro:IPR036922|uniprotkb:O26065(identity) mint:P56124|refseq:WP_000899254.1|refseq:NP_207036.1|ensemblbacteria:AAD07305(transcript)|ensemblbacteria:HP_0238(gene)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004827"(proline-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006433"(prolyl-tRNA aminoacylation)|interpro:IPR002314("Aminoacyl-tRNA synthetase, class II (G, H, P and S)")|interpro:IPR002316(Prolyl-tRNA synthetase, class IIa)|interpro:IPR004154(Anticodon-binding)|interpro:IPR004500(Prolyl-tRNA synthetase, class IIa, bacterial)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR007214(YbaK/aminoacyl-tRNA synthetase associated region)|interpro:IPR023717|interpro:IPR036621|interpro:IPR033730|interpro:IPR036754|interpro:IPR044140|dip:DIP-3265N|uniprotkb:P56124(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process noncognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys-tRNA(Pro) is not edited by ProRS" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Cs0Ms4ihvKf78JKv5PK+c7UWB+085962 rogid:wNj4MIxV+X3IDC4bG4E3MEotzYE85962 intact-crc:0C65043417B60EF1|rigid:VXD8ANQdt3wUNn/x38X0DVYZlaU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26066 uniprotkb:O25756 intact:EBI-7510923|intact:MINT-166853|ensemblbacteria:AAD08581 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:mfd_helpy(display_long)|uniprotkb:HP_1541(locus name)|uniprotkb:mfd(gene name)|psi-mi:mfd(display_short) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328507|imex:IM-22256-656 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26066|refseq:WP_000616334.1|refseq:NP_208332.1|ensemblbacteria:AAD08581(transcript)|ensemblbacteria:HP_1541(gene)|go:"GO:0000716"(transcription-coupled nucleotide-excision repair, DNA damage recognition)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006268"(DNA unwinding involved in DNA replication)|go:"GO:0006270"(DNA replication initiation)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016787"(hydrolase activity)|go:"GO:0043138"(3'-5' DNA helicase activity)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR003711(Transcription factor CarD)|interpro:IPR004576(Transcription-repair coupling factor)|interpro:IPR005118(TRCF)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|interpro:IPR036101|interpro:IPR037235|interpro:IPR041471|dip:DIP-3189N|uniprotkb:O26066(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Necessary for strand-specific repair. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognized by TRCF which releases RNAP and the truncated transcript; the TCRF may replace RNAP at the lesion site and then recruit the uvrA/B/C repair system" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N4KaAN11uvhBxvymYmBsw/UWsw485962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:25575CE8DC71AF95|rigid:8DNdp9drZu6GB090ifyVdxhYoTs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26066 uniprotkb:O25193 intact:EBI-7510923|intact:MINT-166853|ensemblbacteria:AAD08581 intact:EBI-9268368|ensemblbacteria:AAD07521 psi-mi:mfd_helpy(display_long)|uniprotkb:HP_1541(locus name)|uniprotkb:mfd(gene name)|psi-mi:mfd(display_short) psi-mi:o25193_helpy(display_long)|uniprotkb:HP_0445(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328489|imex:IM-22256-655 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26066|refseq:WP_000616334.1|refseq:NP_208332.1|ensemblbacteria:AAD08581(transcript)|ensemblbacteria:HP_1541(gene)|go:"GO:0000716"(transcription-coupled nucleotide-excision repair, DNA damage recognition)|go:"GO:0003684"(damaged DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006268"(DNA unwinding involved in DNA replication)|go:"GO:0006270"(DNA replication initiation)|go:"GO:0006302"(double-strand break repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016787"(hydrolase activity)|go:"GO:0043138"(3'-5' DNA helicase activity)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR003711(Transcription factor CarD)|interpro:IPR004576(Transcription-repair coupling factor)|interpro:IPR005118(TRCF)|interpro:IPR011545(DNA/RNA helicase, DEAD/DEAH box type, N-terminal)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|interpro:IPR036101|interpro:IPR037235|interpro:IPR041471|dip:DIP-3189N|uniprotkb:O26066(identity) ensemblbacteria:AAD07521(transcript)|ensemblbacteria:HP_0445(gene)|uniprotkb:O25193(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Necessary for strand-specific repair. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognized by TRCF which releases RNAP and the truncated transcript; the TCRF may replace RNAP at the lesion site and then recruit the uvrA/B/C repair system" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N4KaAN11uvhBxvymYmBsw/UWsw485962 rogid:MA06LY47GdRMwnyLuB4R6iCKeyA85962 intact-crc:24F71FD8D5713F9C|rigid:wyvK0qdoPDce/bBqNzJtazOnpUo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26067 uniprotkb:O25983 intact:EBI-7644202|ensemblbacteria:AAD08589|intact:MINT-162254 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o26067_helpy(display_long)|uniprotkb:HP_1542(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328543|imex:IM-22256-658 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08589(transcript)|ensemblbacteria:HP_1542(gene)|interpro:IPR007607(Protein of unknown function DUF583)|mint:O26067|refseq:NP_208333.1|refseq:WP_000963941.1|dip:DIP-3754N|uniprotkb:O26067(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:i5dOi+oouSYbBRl0ExvT0BvZQyo85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:3DCE03475076BC37|rigid:Dipm29g9Kjq1jC2HvEU8c2vfaas false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26067 uniprotkb:O25693 intact:EBI-7644202|ensemblbacteria:AAD08589|intact:MINT-162254 intact:EBI-9261373|ensemblbacteria:AAD08105 psi-mi:o26067_helpy(display_long)|uniprotkb:HP_1542(locus name) psi-mi:minc_helpy(display_long)|uniprotkb:minC(gene name)|psi-mi:minC(display_short)|uniprotkb:HP_1053(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328525|imex:IM-22256-657 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08589(transcript)|ensemblbacteria:HP_1542(gene)|interpro:IPR007607(Protein of unknown function DUF583)|mint:O26067|refseq:NP_208333.1|refseq:WP_000963941.1|dip:DIP-3754N|uniprotkb:O26067(identity) refseq:WP_000921052.1|refseq:NP_207844.1|interpro:IPR005526(Septum formation inhibitor MinC, C-terminal)|interpro:IPR013033(Septum formation inhibitor MinC)|interpro:IPR016098(Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal)|interpro:IPR036145|ensemblbacteria:AAD08105(transcript)|ensemblbacteria:HP_1053(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0000917"(division septum assembly)|go:"GO:1901891"(regulation of cell septum assembly)|uniprotkb:O25693(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:i5dOi+oouSYbBRl0ExvT0BvZQyo85962 rogid:bj1yqCAycq4MJipngXWZ34uLzxY85962 intact-crc:EA863EC54BFDAE2C|rigid:uHFkxTRIQHJ0LZcVl2nIYDijfwE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25629 uniprotkb:O26069 intact:EBI-7505515|intact:MINT-163208|ensemblbacteria:AAD08024 intact:EBI-7609332|intact:MINT-161790|ensemblbacteria:AAD08583 psi-mi:ftsa_helpy(display_long)|uniprotkb:ftsA(gene name)|psi-mi:ftsA(display_short)|uniprotkb:HP_0978(locus name) psi-mi:o26069_helpy(display_long)|uniprotkb:HP_1544(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328579|imex:IM-22256-660 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25629|refseq:WP_000400290.1|refseq:NP_207769.1|ensemblbacteria:AAD08024(transcript)|ensemblbacteria:HP_0978(gene)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051301"(cell division)|interpro:IPR003494(Cell division protein FtsA)|interpro:IPR020823|interpro:IPR043129|dip:DIP-3124N|uniprotkb:O25629(identity) mint:O26069|refseq:WP_001136019.1|refseq:NP_208335.1|ensemblbacteria:AAD08583(transcript)|ensemblbacteria:HP_1544(gene)|go:"GO:0000920"(septum digestion after cytokinesis)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0016021"(integral component of membrane)|interpro:IPR011055(Duplicated hybrid motif)|interpro:IPR016047(Peptidase M23)|rcsb pdb:5J1K|rcsb pdb:5J1L|rcsb pdb:5J1M|dip:DIP-3645N|uniprotkb:O26069(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein may be involved in anomalous filament growth. May be a component of the septum comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jRkQVJaEFRsCXTz0mUmRP13iyes85962 rogid:iG/Bi9+hrZqpiT760Q4IIyXbrSQ85962 intact-crc:CE54C8E1A1182352|rigid:s5MfkEa4eq2nIzFS9MdFc0jePj0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26067 uniprotkb:O26067 intact:EBI-7644202|ensemblbacteria:AAD08589|intact:MINT-162254 intact:EBI-7644202|ensemblbacteria:AAD08589|intact:MINT-162254 psi-mi:o26067_helpy(display_long)|uniprotkb:HP_1542(locus name) psi-mi:o26067_helpy(display_long)|uniprotkb:HP_1542(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328561|imex:IM-22256-659 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08589(transcript)|ensemblbacteria:HP_1542(gene)|interpro:IPR007607(Protein of unknown function DUF583)|mint:O26067|refseq:NP_208333.1|refseq:WP_000963941.1|dip:DIP-3754N|uniprotkb:O26067(identity) ensemblbacteria:AAD08589(transcript)|ensemblbacteria:HP_1542(gene)|interpro:IPR007607(Protein of unknown function DUF583)|mint:O26067|refseq:NP_208333.1|refseq:WP_000963941.1|dip:DIP-3754N|uniprotkb:O26067(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:i5dOi+oouSYbBRl0ExvT0BvZQyo85962 rogid:i5dOi+oouSYbBRl0ExvT0BvZQyo85962 intact-crc:F2963D901F516EE4|rigid:Bupcg1+zqYqTDi+JaBXauz1LjNY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26071 uniprotkb:O25990 intact:EBI-9261904|ensemblbacteria:AAD08590 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o26071_helpy(display_long)|uniprotkb:HP_1546(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328615|imex:IM-22256-662 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001202125.1|interpro:IPR007485(Rare lipoprotein B)|refseq:NP_208337.1|ensemblbacteria:AAD08590(transcript)|ensemblbacteria:HP_1546(gene)|go:"GO:0019867"(outer membrane)|go:"GO:0043165"(Gram-negative-bacterium-type cell outer membrane assembly)|uniprotkb:O26071(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:G4XOzucE1Mq9a/cBvsA+kr5IyHk85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:35259879362E6429|rigid:xqUjS+iiy8lcAhGAqFu+pG/InIQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25678 uniprotkb:O26069 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-7609332|intact:MINT-161790|ensemblbacteria:AAD08583 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o26069_helpy(display_long)|uniprotkb:HP_1544(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328597|imex:IM-22256-661 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) mint:O26069|refseq:WP_001136019.1|refseq:NP_208335.1|ensemblbacteria:AAD08583(transcript)|ensemblbacteria:HP_1544(gene)|go:"GO:0000920"(septum digestion after cytokinesis)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0016021"(integral component of membrane)|interpro:IPR011055(Duplicated hybrid motif)|interpro:IPR016047(Peptidase M23)|rcsb pdb:5J1K|rcsb pdb:5J1L|rcsb pdb:5J1M|dip:DIP-3645N|uniprotkb:O26069(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:iG/Bi9+hrZqpiT760Q4IIyXbrSQ85962 intact-crc:1D86E463C394A130|rigid:EIHvt1rZQUg0F9Yibi647+1DePQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:O26080 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328633|imex:IM-22256-663 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:4F49DC4501DBC905|rigid:N/6SxJ0ZZ+dy5C7a8rrxewTl4lQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26080 uniprotkb:O25417 intact:EBI-9260543|ensemblbacteria:AAD08598 intact:EBI-9262268|ensemblbacteria:AAD07765 psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:o25417_helpy(display_long)|uniprotkb:HP_0715(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328669|imex:IM-22256-665 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) refseq:WP_000353241.1|interpro:IPR030921|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:NP_207509.1|ensemblbacteria:AAD07765(transcript)|ensemblbacteria:HP_0715(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015803"(branched-chain amino acid transport)|go:"GO:0015807"(L-amino acid transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|uniprotkb:O25417(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 rogid:EtbfiHVp0ygQ/Yc+5Yl7Y4UZha485962 intact-crc:C71331C15F348D5B|rigid:8c9LnaN1i9OLiFYmmOmWkKfjAm8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:O26080 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328651|imex:IM-22256-664 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:9F2D81476D57AB69|rigid:uo/NHliSphweY1Le/9JCrajSbYU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56122 uniprotkb:O26080 intact:EBI-7500271|intact:MINT-176132|ensemblbacteria:AAD07726 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:aroc_helpy(display_long)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328705|imex:IM-22256-667 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56122|refseq:WP_001094036.1|interpro:IPR020541|refseq:NP_207457.1|interpro:IPR000453(Chorismate synthase)|ensemblbacteria:AAD07726(transcript)|ensemblbacteria:HP_0663(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0010181"(FMN binding)|rcsb pdb:1UM0|rcsb pdb:1UMF|interpro:IPR035904|uniprotkb:P56122(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ALKO1omI2Rxmk057Rl7wyKvMlc85962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:E8881733F76241F5|rigid:kSUSWk2X+L+FneIyPx+oCrrDy8M false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25769 uniprotkb:O26080 intact:EBI-7500041|intact:MINT-169612|ensemblbacteria:AAD08203 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:fliw1_helpy(display_long)|uniprotkb:HP_1154(locus name)|uniprotkb:fliW1(gene name)|psi-mi:fliW1(display_short) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328687|imex:IM-22256-666 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25769|refseq:WP_001105854.1|refseq:NP_207945.1|ensemblbacteria:AAD08203(transcript)|ensemblbacteria:HP_1154(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|dip:DIP-3307N|uniprotkb:O25769(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:akwR8LvQZuOb1rNt4vqG2NubfHU85962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:F7B7D6B335122F31|rigid:xpZICF/bhq8f6wkPuojyduQl7Wk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZN32 uniprotkb:O26080 intact:EBI-9260158|ensemblbacteria:AAD05612 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328741|imex:IM-22256-669 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:7F5D55D8E6F26A1C|rigid:I7+JVDy0lNJhufA5mj+oyr0X3e8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZL79 uniprotkb:O26080 intact:EBI-9262981|ensemblbacteria:AAD06276 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:q9zl79_helpj(display_long)|uniprotkb:jhp_0701(locus name) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328723|imex:IM-22256-668 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005358(Protein of unknown function UPF0153)|ensemblbacteria:AAD06276(transcript)|ensemblbacteria:jhp_0701(gene)|uniprotkb:Q9ZL79(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lF/xSeC5ME9IUHouS6yOLLg1grE85963 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:BF6A4235997D514C|rigid:4FOQKyG+GPSAZELrhNx9iARfX7o false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:O26081 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328759|imex:IM-22256-670 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 intact-crc:07ECCAA938B2D912|rigid:TpoxRd6cveBYtf+U6X0zt5rNmFI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:O25495 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328795|imex:IM-22256-672 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 intact-crc:75ED1FAC52E47C78|rigid:9fUAAowV76VHL6SogHkoF8ySDQg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25272 uniprotkb:O26081 intact:EBI-7651076|ensemblbacteria:AAD07605|intact:MINT-161915 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 psi-mi:o25272_helpy(display_long)|uniprotkb:HP_0539(locus name) psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328777|imex:IM-22256-671 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25272|ensemblbacteria:AAD07605(transcript)|ensemblbacteria:HP_0539(gene)|rcsb pdb:3ZCI|rcsb pdb:3ZCJ|rcsb pdb:4CII|rcsb pdb:4X5U|refseq:NP_207335.1|refseq:WP_000855299.1|dip:DIP-3544N|uniprotkb:O25272(identity) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nQvUcaMFjvL0wOk4hyIagpwGQ5s85962 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 intact-crc:959F4786EA4FF6C0|rigid:0riohYMYDfKCFmNEZOtRnXwavbk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:O25676 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328831|imex:IM-22256-674 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:BE9D7025BC7A9596|rigid:5sGg+lrlebIZWZ/qePo7qqF/CEw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:O25546 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328813|imex:IM-22256-673 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:30E4488B2B93EB01|rigid:F09c0CvpFRjimBQGq8dGSPz8XB8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:O25743 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328849|imex:IM-22256-675 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 intact-crc:9F94483363423349|rigid:+XWf30h6VKznzXxfidYKaZ5BFng false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:O25769 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-7500041|intact:MINT-169612|ensemblbacteria:AAD08203 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:fliw1_helpy(display_long)|uniprotkb:HP_1154(locus name)|uniprotkb:fliW1(gene name)|psi-mi:fliW1(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328885|imex:IM-22256-677 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) mint:O25769|refseq:WP_001105854.1|refseq:NP_207945.1|ensemblbacteria:AAD08203(transcript)|ensemblbacteria:HP_1154(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|dip:DIP-3307N|uniprotkb:O25769(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:akwR8LvQZuOb1rNt4vqG2NubfHU85962 intact-crc:6F769D5D60F75D4A|rigid:DFwYF1a+W4g5Rt5nunnVr88ytIQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:O25754 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-7653735|ensemblbacteria:AAD08171|intact:MINT-164494 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:exdl1_helpy(display_long)|uniprotkb:HP_1129(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328867|imex:IM-22256-676 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) ensemblbacteria:AAD08171(transcript)|ensemblbacteria:HP_1129(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0022857"(transmembrane transporter activity)|interpro:IPR003400(Biopolymer transport protein ExbD/TolR)|mint:O25754|refseq:NP_207920.1|refseq:WP_001105106.1|dip:DIP-3550N|uniprotkb:O25754(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:zA9fWUgDJHLw2n/n3gdqcOyvR/I85962 intact-crc:E3A9A5194E1F1964|rigid:H8rGvgMeDMMH3rqkHergk21hF3I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:P64657 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-9270941|uniprotkb:O25027|ensemblbacteria:AAD07321 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:y245_helpy(display_long)|uniprotkb:HP_0245(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328921|imex:IM-22256-679 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) refseq:WP_000609401.1|interpro:IPR016511(Uncharacterised conserved protein UCP007248)|refseq:NP_207043.1|ensemblbacteria:AAD07321(transcript)|ensemblbacteria:HP_0245(gene)|uniprotkb:P64657(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:gVMsfhyi281rtqBnLmL/QQCpGXk85962 intact-crc:A0A1D7FDC0A7278B|rigid:LeY/JlmBMYk9Sp/O5W5wqlMKEgA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:O26106 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-9270926|ensemblbacteria:AAD08626 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:y1587_helpy(display_long)|uniprotkb:HP_1587(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328903|imex:IM-22256-678 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) interpro:IPR021150|ensemblbacteria:AAD08626(transcript)|ensemblbacteria:HP_1587(gene)|uniprotkb:O26106(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:FksYxTweFfC7hMK/69QLaW5M+j885962 intact-crc:5AC98636C2E927F1|rigid:bg3vFX9tTf57C2c3uvY6Lupq1Mk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:Q9ZKJ9 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328939|imex:IM-22256-680 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:A29723C3A93F66F1|rigid:5mlpv+jqMx9KV8rH0GMi+pbxmQY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25998 uniprotkb:O26084 intact:EBI-7601350|intact:MINT-172739|ensemblbacteria:AAD08504 intact:EBI-9270978|ensemblbacteria:AAD08604 psi-mi:o25998_helpy(display_long)|uniprotkb:HP_1462(locus name) psi-mi:o26084_helpy(display_long)|uniprotkb:HP_1564(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328975|imex:IM-22256-682 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25998|refseq:WP_001873459.1|refseq:NP_208253.1|ensemblbacteria:AAD08504(transcript)|ensemblbacteria:HP_1462(gene)|interpro:IPR005184(Protein of unknown function DUF306, Meta and HslJ)|interpro:IPR038670|dip:DIP-3605N|uniprotkb:O25998(identity) refseq:WP_001862559.1|interpro:IPR004872(NLPA lipoprotein)|refseq:NP_208355.1|ensemblbacteria:AAD08604(transcript)|ensemblbacteria:HP_1564(gene)|go:"GO:0016020"(membrane)|uniprotkb:O26084(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:vK+Q4OfYKb4A7hIchwzYE/DJkvI85962 rogid:DzO18cPtpzYTXsLAZ+cIrmdyBD085962 intact-crc:F1EFAEF67F463AC3|rigid:MMVpUYsxZyPeEc/RB5CIQOYDayM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25113 uniprotkb:O26084 intact:EBI-7633054|ensemblbacteria:AAD07417|intact:MINT-187451 intact:EBI-9270978|ensemblbacteria:AAD08604 psi-mi:o25113_helpy(display_long)|uniprotkb:HP_0346(locus name) psi-mi:o26084_helpy(display_long)|uniprotkb:HP_1564(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328957|imex:IM-22256-681 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07417(transcript)|ensemblbacteria:HP_0346(gene)|mint:O25113|refseq:WP_010875469.1|dip:DIP-3740N|uniprotkb:O25113(identity) refseq:WP_001862559.1|interpro:IPR004872(NLPA lipoprotein)|refseq:NP_208355.1|ensemblbacteria:AAD08604(transcript)|ensemblbacteria:HP_1564(gene)|go:"GO:0016020"(membrane)|uniprotkb:O26084(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3tDHTPf4i6qTBg5T+5R4VwGUUfo85962 rogid:DzO18cPtpzYTXsLAZ+cIrmdyBD085962 intact-crc:E3F037FD1D5AB1A1|rigid:HseH0QTCw0/6NBLE3QC1Gg2csS0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26096 uniprotkb:O26096 intact:EBI-7576839|uniprotkb:O30552|intact:MINT-177552|ensemblbacteria:AAD08616 intact:EBI-7576839|uniprotkb:O30552|intact:MINT-177552|ensemblbacteria:AAD08616 psi-mi:metn_helpy(display_long)|uniprotkb:HP_1576(locus name)|uniprotkb:metN(gene name)|psi-mi:metN(display_short) psi-mi:metn_helpy(display_long)|uniprotkb:HP_1576(locus name)|uniprotkb:metN(gene name)|psi-mi:metN(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329011|imex:IM-22256-684 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000259757.1|mint:O26096|refseq:NP_208367.1|ensemblbacteria:AAD08616(transcript)|ensemblbacteria:HP_1576(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0033232"(ABC-type D-methionine transporter activity)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR018449|interpro:IPR026253|interpro:IPR027417|interpro:IPR041701|dip:DIP-3488N|uniprotkb:O26096(identity) refseq:WP_000259757.1|mint:O26096|refseq:NP_208367.1|ensemblbacteria:AAD08616(transcript)|ensemblbacteria:HP_1576(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0033232"(ABC-type D-methionine transporter activity)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR018449|interpro:IPR026253|interpro:IPR027417|interpro:IPR041701|dip:DIP-3488N|uniprotkb:O26096(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Part of the ABC transporter complex metNIQ involved in methionine import. Responsible for energy coupling to the transport system comment:mint|function:Part of the ABC transporter complex metNIQ involved in methionine import. Responsible for energy coupling to the transport system figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wgXDC2rSq0QFIrChBD1i/2W3khE85962 rogid:wgXDC2rSq0QFIrChBD1i/2W3khE85962 intact-crc:8C56B8C938A096D8|rigid:2Ht5eRyFIKiRDS8aUu7lm+U+CYg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26095 uniprotkb:O25513 intact:EBI-9265909|ensemblbacteria:AAD08615 intact:EBI-9260843|ensemblbacteria:AAD07896 psi-mi:o26095_helpy(display_long)|uniprotkb:HP_1575(locus name) psi-mi:o25513_helpy(display_long)|uniprotkb:HP_0842(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9328993|imex:IM-22256-683 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001044050.1|interpro:IPR004683(FlhB-like)|interpro:IPR006135(Type III secretion exporter)|refseq:NP_208366.1|interpro:IPR029025|ensemblbacteria:AAD08615(transcript)|ensemblbacteria:HP_1575(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|uniprotkb:O26095(identity) refseq:WP_000888450.1|refseq:NP_207635.1|ensemblbacteria:AAD07896(transcript)|ensemblbacteria:HP_0842(gene)|uniprotkb:O25513(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:xBG9LemlM3q5CRwoedP7u3QRAtg85962 rogid:+KQssvSMk8xQbfSSdSgOV+W+VeY85962 intact-crc:166285C1A9D07FA7|rigid:b7RTgXRYZYYpJZWxGZ2TbFDByLI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26102 uniprotkb:O26102 intact:EBI-9271059|ensemblbacteria:AAD08620 intact:EBI-9271059|ensemblbacteria:AAD08620 psi-mi:pdxj_helpy(display_long)|uniprotkb:pdxJ(gene name)|psi-mi:pdxJ(display_short)|uniprotkb:HP_1582(locus name) psi-mi:pdxj_helpy(display_long)|uniprotkb:pdxJ(gene name)|psi-mi:pdxJ(display_short)|uniprotkb:HP_1582(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329047|imex:IM-22256-686 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001210849.1|interpro:IPR036130|interpro:IPR004569("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ")|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:NP_208373.1|ensemblbacteria:AAD08620(transcript)|ensemblbacteria:HP_1582(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0033856"(pyridoxine 5'-phosphate synthase activity)|uniprotkb:O26102(identity) refseq:WP_001210849.1|interpro:IPR036130|interpro:IPR004569("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ")|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:NP_208373.1|ensemblbacteria:AAD08620(transcript)|ensemblbacteria:HP_1582(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0033856"(pyridoxine 5'-phosphate synthase activity)|uniprotkb:O26102(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fo7url6kxdrXBaICCslCKk6m/K085962 rogid:Fo7url6kxdrXBaICCslCKk6m/K085962 intact-crc:113341E418C43593|rigid:O3VsYR2hOqmMD648xf3JncpWoRI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26096 uniprotkb:O26099 intact:EBI-7576839|uniprotkb:O30552|intact:MINT-177552|ensemblbacteria:AAD08616 intact:EBI-9271041|ensemblbacteria:AAD08624 psi-mi:metn_helpy(display_long)|uniprotkb:HP_1576(locus name)|uniprotkb:metN(gene name)|psi-mi:metN(display_short) psi-mi:o26099_helpy(display_long)|uniprotkb:HP_1579(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329029|imex:IM-22256-685 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000259757.1|mint:O26096|refseq:NP_208367.1|ensemblbacteria:AAD08616(transcript)|ensemblbacteria:HP_1576(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0033232"(ABC-type D-methionine transporter activity)|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR018449|interpro:IPR026253|interpro:IPR027417|interpro:IPR041701|dip:DIP-3488N|uniprotkb:O26096(identity) refseq:WP_000914282.1|refseq:NP_208370.1|ensemblbacteria:AAD08624(transcript)|ensemblbacteria:HP_1579(gene)|uniprotkb:O26099(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Part of the ABC transporter complex metNIQ involved in methionine import. Responsible for energy coupling to the transport system - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wgXDC2rSq0QFIrChBD1i/2W3khE85962 rogid:/JwIPPEJfu8yBue+o5/oOLheshQ85962 intact-crc:CE6B560DCCA053DA|rigid:2XHu2zheFExuPgcMk/nPgUDnb2k false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26103 uniprotkb:O26103 intact:EBI-7505664|ensemblbacteria:AAD08621|intact:MINT-176457 intact:EBI-7505664|ensemblbacteria:AAD08621|intact:MINT-176457 psi-mi:pdxa_helpy(display_long)|uniprotkb:HP_1583(locus name)|uniprotkb:pdxA(gene name)|psi-mi:pdxA(display_short)|uniprotkb:"4-(phosphohydroxy)-L-threonine dehydrogenase"(gene name synonym) psi-mi:pdxa_helpy(display_long)|uniprotkb:HP_1583(locus name)|uniprotkb:pdxA(gene name)|psi-mi:pdxA(display_short)|uniprotkb:"4-(phosphohydroxy)-L-threonine dehydrogenase"(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329065|imex:IM-22256-687 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08621(transcript)|go:"GO:0050897"(cobalt ion binding)|go:"GO:0051287"(NAD binding)|interpro:IPR005255("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA")|interpro:IPR037539|ensemblbacteria:HP_1583(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0042823"(pyridoxal phosphate biosynthetic process)|go:"GO:0050570"(4-hydroxythreonine-4-phosphate dehydrogenase activity)|mint:O26103|refseq:WP_001075036.1|refseq:NP_208374.1|dip:DIP-3611N|uniprotkb:O26103(identity) ensemblbacteria:AAD08621(transcript)|go:"GO:0050897"(cobalt ion binding)|go:"GO:0051287"(NAD binding)|interpro:IPR005255("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA")|interpro:IPR037539|ensemblbacteria:HP_1583(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0042823"(pyridoxal phosphate biosynthetic process)|go:"GO:0050570"(4-hydroxythreonine-4-phosphate dehydrogenase activity)|mint:O26103|refseq:WP_001075036.1|refseq:NP_208374.1|dip:DIP-3611N|uniprotkb:O26103(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Catalyzes the NAD(P)-dependent oxidation of 4-(phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)" comment:mint|function:"Catalyzes the NAD(P)-dependent oxidation of 4-(phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UhfwT6tN4pIlSVcVDC2VOgjXhxQ85962 rogid:UhfwT6tN4pIlSVcVDC2VOgjXhxQ85962 intact-crc:E7D449C4DB62897E|rigid:YQmLdn/sEc7ZIunRm3NGKT8YrqY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25281 uniprotkb:O26104 intact:EBI-7561260|intact:MINT-4065553|ensemblbacteria:AAD07621 intact:EBI-9271090|ensemblbacteria:AAD08623 psi-mi:o25281_helpy(display_long)|uniprotkb:HP_0555(locus name) psi-mi:o26104_helpy(display_long)|uniprotkb:Distal rod protein(gene name synonym)|uniprotkb:HP_1585(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329101|imex:IM-22256-689 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000792823.1|mint:O25281|refseq:NP_207350.1|ensemblbacteria:AAD07621(transcript)|ensemblbacteria:HP_0555(gene)|uniprotkb:O25281(identity) interpro:IPR037925|refseq:WP_000946438.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR012834(Flagellar basal-body rod FlgG)|interpro:IPR019776|interpro:IPR020013|refseq:NP_208376.1|ensemblbacteria:AAD08623(transcript)|ensemblbacteria:HP_1585(gene)|go:"GO:0009426"(bacterial-type flagellum basal body, distal rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26104(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:j1Ircb978rDdJr0b+ERbTW6corQ85962 rogid:sQ8CxRtX7uP5ED+hw8HnnV9HPQM85962 intact-crc:9E4034C976EBB585|rigid:bC0B3qftItZ/Kr+AQ7KMjX7PP5Y false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25038 uniprotkb:O26104 intact:EBI-9261404|ensemblbacteria:AAD07325 intact:EBI-9271090|ensemblbacteria:AAD08623 psi-mi:o25038_helpy(display_long)|uniprotkb:HP_0257(locus name) psi-mi:o26104_helpy(display_long)|uniprotkb:Distal rod protein(gene name synonym)|uniprotkb:HP_1585(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329083|imex:IM-22256-688 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001226637.1|interpro:IPR006668(MgtE intracellular region)|refseq:NP_207055.1|interpro:IPR038076|ensemblbacteria:AAD07325(transcript)|ensemblbacteria:HP_0257(gene)|uniprotkb:O25038(identity) interpro:IPR037925|refseq:WP_000946438.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR012834(Flagellar basal-body rod FlgG)|interpro:IPR019776|interpro:IPR020013|refseq:NP_208376.1|ensemblbacteria:AAD08623(transcript)|ensemblbacteria:HP_1585(gene)|go:"GO:0009426"(bacterial-type flagellum basal body, distal rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26104(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uVXjhpyFxXT8EXwW+LC/asYO5E885962 rogid:sQ8CxRtX7uP5ED+hw8HnnV9HPQM85962 intact-crc:25BAADE5F223F901|rigid:JmWj+idZMzx8KM6XnIYSc+afzug false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25469 uniprotkb:O26104 intact:EBI-7501223|intact:MINT-188145|ensemblbacteria:AAD07833 intact:EBI-9271090|ensemblbacteria:AAD08623 psi-mi:o25469_helpy(display_long)|uniprotkb:HP_0780(locus name) psi-mi:o26104_helpy(display_long)|uniprotkb:Distal rod protein(gene name synonym)|uniprotkb:HP_1585(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329119|imex:IM-22256-690 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25469|refseq:WP_010875544.1|refseq:NP_207573.1|ensemblbacteria:AAD07833(transcript)|ensemblbacteria:HP_0780(gene)|dip:DIP-3759N|uniprotkb:O25469(identity) interpro:IPR037925|refseq:WP_000946438.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR012834(Flagellar basal-body rod FlgG)|interpro:IPR019776|interpro:IPR020013|refseq:NP_208376.1|ensemblbacteria:AAD08623(transcript)|ensemblbacteria:HP_1585(gene)|go:"GO:0009426"(bacterial-type flagellum basal body, distal rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26104(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:T79IvYyIaKGuB1dKySph4yiJ0Ek85962 rogid:sQ8CxRtX7uP5ED+hw8HnnV9HPQM85962 intact-crc:D5F169FE9F95226C|rigid:5NWe1mNnC18zty2ONG6+XXlCVl8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26107 uniprotkb:O26107 intact:EBI-9271154|ensemblbacteria:AAD08627 intact:EBI-9271154|ensemblbacteria:AAD08627 psi-mi:y1588_helpy(display_long)|uniprotkb:HP_1588(locus name) psi-mi:y1588_helpy(display_long)|uniprotkb:HP_1588(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329155|imex:IM-22256-692 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000323695.1|interpro:IPR021150|interpro:IPR025217|refseq:NP_208379.1|ensemblbacteria:AAD08627(transcript)|ensemblbacteria:HP_1588(gene)|uniprotkb:O26107(identity) refseq:WP_000323695.1|interpro:IPR021150|interpro:IPR025217|refseq:NP_208379.1|ensemblbacteria:AAD08627(transcript)|ensemblbacteria:HP_1588(gene)|uniprotkb:O26107(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:IS2aJqhNqNM78vlHnSxufaefhn085962 rogid:IS2aJqhNqNM78vlHnSxufaefhn085962 intact-crc:5C4AB947D5F87AC8|rigid:g/jM9y1H2KrVfzRzL4HjOe+l5SQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:O26104 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9271090|ensemblbacteria:AAD08623 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o26104_helpy(display_long)|uniprotkb:Distal rod protein(gene name synonym)|uniprotkb:HP_1585(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329137|imex:IM-22256-691 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) interpro:IPR037925|refseq:WP_000946438.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR012834(Flagellar basal-body rod FlgG)|interpro:IPR019776|interpro:IPR020013|refseq:NP_208376.1|ensemblbacteria:AAD08623(transcript)|ensemblbacteria:HP_1585(gene)|go:"GO:0009426"(bacterial-type flagellum basal body, distal rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26104(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:sQ8CxRtX7uP5ED+hw8HnnV9HPQM85962 intact-crc:BA41B96569D5B99A|rigid:Otxq7XqF8wnSFYZ/s+l9kkfdsd4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34410 uniprotkb:O25365 intact:EBI-7498235|intact:MINT-186991|ensemblbacteria:AAD07556|ensemblbacteria:AAD08167 intact:EBI-527960|ensemblbacteria:AAD07718 psi-mi:o34410_helpy(display_long)|uniprotkb:HP_0488(locus name)|uniprotkb:HP_1116(locus name) psi-mi:o25365_helpy(display_long)|uniprotkb:HP_0650(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329173|imex:IM-22256-693 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000775280.1|refseq:NP_207907.1|refseq:NP_207285.1|ensemblbacteria:AAD07556(transcript)|ensemblbacteria:AAD08167(transcript)|ensemblbacteria:HP_0488(gene)|ensemblbacteria:HP_1116(gene)|interpro:IPR021907|interpro:IPR041092|interpro:IPR041398|mint:O34410|dip:DIP-3192N|uniprotkb:O34410(identity) refseq:NP_207444.1|ensemblbacteria:AAD07718(transcript)|ensemblbacteria:HP_0650(gene)|interpro:IPR036895|refseq:WP_010875512.1|dip:DIP-3466N|mint:O25365|uniprotkb:O25365(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWaKOMCtnCOeEhJ+LSJq53vQU5k85962 rogid:IMmGhGbKAQVB4EnREmbRLMHmbtw85962 intact-crc:572378CA282C36E4|rigid:RubszzL/hlA3gRsnL7GP95wn6NM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34461 uniprotkb:O25261 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-9263582|ensemblbacteria:AAD07593 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o25261_helpy(display_long)|uniprotkb:HP_0526(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329209|imex:IM-22256-695 author score:A and B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:WP_000418809.1|interpro:IPR015139(Cag pathogenicity island protein, CagZ)|refseq:NP_207322.1|rcsb pdb:6JHO|interpro:IPR036303|ensemblbacteria:AAD07593(transcript)|ensemblbacteria:HP_0526(gene)|uniprotkb:O25261(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system. The interaction was found using two clones with identical sequence that gave results classified in both the A and B confidence groups.|author-confidence:A and B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:9tGFgyPZpUWZ7K5r04mdtqRhhMs85962 intact-crc:367E7FDD97F6FA09|rigid:cm+kiTsVia8KGHopLlJUfhVOixU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24926 uniprotkb:O34461 intact:EBI-7494854|intact:MINT-159805|ensemblbacteria:AAD07168 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:queh_helpy(display_long)|uniprotkb:Queuosine biosynthesis protein QueH(gene name synonym)|uniprotkb:HP_0100(locus name)|uniprotkb:queH(gene name)|psi-mi:queH(display_short) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329191|imex:IM-22256-694 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24926|refseq:NP_206900.1|refseq:WP_000905219.1|ensemblbacteria:AAD07168(transcript)|ensemblbacteria:HP_0100(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0052693"(epoxyqueuosine reductase activity)|interpro:IPR003828(Protein of unknown function DUF208)|dip:DIP-3170N|uniprotkb:O24926(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wq9kyscW1vuBxHL6xNZc6vRBdys85962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:BE5FF33BC957F24F|rigid:j1Qn8SduSebenIZWZpgprxWX8Sg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34461 uniprotkb:O25664 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329245|imex:IM-22256-697 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:66C110A62CD7FF1A|rigid:xfg5O5nGIN+9Y0gMSgxlqpkHEdA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25546 uniprotkb:O34461 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329227|imex:IM-22256-696 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:F23A89D6592F5F6F|rigid:1m81j3OwEDuHaznGWpH1arMFD0w false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34461 uniprotkb:O25676 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329263|imex:IM-22256-698 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:7C43B178CEC621F8|rigid:NOpoQkR2jL7wJnLePVk6fG/qZro false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25874 uniprotkb:O34461 intact:EBI-7263126|intact:MINT-165617|ensemblbacteria:AAD08332 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:o25874_helpy(display_long)|uniprotkb:HP_1287(locus name) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329299|imex:IM-22256-700 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25874|refseq:NP_208079.1|refseq:WP_001198338.1|ensemblbacteria:AAD08332(transcript)|ensemblbacteria:HP_1287(gene)|go:"GO:0005829"(cytosol)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:0050334"(thiaminase activity)|interpro:IPR004305(TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C)|interpro:IPR016084(Haem oxygenase-like, multi-helical)|interpro:IPR027574|dip:DIP-3726N|uniprotkb:O25874(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UFVRqUwE4cy8k6lgR6jvPHZPOYw85962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:0D6D330274927B42|rigid:UAPsXdMuFr5NJffPuC8mJ7/T+5A false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34461 uniprotkb:O25756 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329281|imex:IM-22256-699 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:FD3BE3D910243026|rigid:m6JPSikFmw2yDBx8Y8AMtKoKpC8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25878 uniprotkb:O34461 intact:EBI-7617898|intact:MINT-174132|ensemblbacteria:AAD08334 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:o25878_helpy(display_long)|uniprotkb:HP_1291(locus name) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329317|imex:IM-22256-701 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001149282.1|mint:O25878|refseq:NP_208083.1|ensemblbacteria:AAD08334(transcript)|ensemblbacteria:HP_1291(gene)|go:"GO:0004788"(thiamine diphosphokinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006772"(thiamine metabolic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:0016301"(kinase activity)|interpro:IPR006282(Thiamin pyrophosphokinase)|interpro:IPR007371(Thiamin pyrophosphokinase, catalytic region)|interpro:IPR036759|dip:DIP-3699N|uniprotkb:O25878(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+gZVP3dg7r1utx+xGirwuV54O2o85962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:14C4F24C9F8335A9|rigid:Ak9fS4o11a1hMQz64Cyi2NDktPQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34461 uniprotkb:O26058 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-7629377|ensemblbacteria:AAD08569|intact:MINT-168810 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o26058_helpy(display_long)|uniprotkb:HP_1530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329353|imex:IM-22256-703 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) ensemblbacteria:AAD08569(transcript)|ensemblbacteria:HP_1530(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0009116"(nucleoside metabolic process)|interpro:IPR035994|refseq:WP_000923009.1|mint:O26058|refseq:NP_208320.1|dip:DIP-3727N|uniprotkb:O26058(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:VxyJAzRUTtAkNRKMW+n2ffKWtq085962 intact-crc:DCDBE4AB761F5390|rigid:eMkqdOMYp8FY9J7OSIdy3DKslY4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:O34461 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329335|imex:IM-22256-702 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:424098DA3DE9130B|rigid:80oMMVwx5pDA0IO0JDPBvAEnFa4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O07678 uniprotkb:O34754 intact:EBI-7696493|ensemblbacteria:AAD08114|intact:MINT-4076544 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 psi-mi:prma_helpy(display_long)|uniprotkb:prmA(gene name)|psi-mi:prmA(display_short)|uniprotkb:hsm(gene name synonym)|uniprotkb:HP_1068(locus name) psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329371|imex:IM-22256-704 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08114(transcript)|ensemblbacteria:HP_1068(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008276"(protein methyltransferase activity)|interpro:IPR004498(Ribosomal protein L11 methyltransferase)|interpro:IPR029063|mint:O07678|refseq:NP_207859.1|refseq:WP_000917395.1|dip:DIP-3670N|uniprotkb:O07678(identity) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Methylates ribosomal protein L11 comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+4M04wmHCL1eTqXYXYQpaU056Vw85962 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 intact-crc:660D9D32352782A3|rigid:fwbYWzbZn8UKvxBG5ltlJ7r51K4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25186 uniprotkb:O34995 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329407|imex:IM-22256-706 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:2A32D4858D48E256|rigid:xcnCUh6p2y53pNYaEuKrPynxtW4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34754 uniprotkb:O34754 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329389|imex:IM-22256-705 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 intact-crc:894AD299CAEB43C1|rigid:LkHXPY9Ix3fOfNeTGUmRfpTyWNU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZKK8 uniprotkb:O34995 intact:EBI-9264174|ensemblbacteria:AAD06505 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329425|imex:IM-22256-707 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:5B0C4E715A0D72D0|rigid:U9gPu1A0yfzfr1FndmRJEILt/sQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0Q7 uniprotkb:O25693 intact:EBI-7532404|intact:MINT-181752|uniprotkb:O05729|ensemblbacteria:AAD07940 intact:EBI-9261373|ensemblbacteria:AAD08105 psi-mi:vdld_helpy(display_long)|uniprotkb:vdlD(gene name)|psi-mi:vdlD(display_short)|uniprotkb:HP_0891(locus name) psi-mi:minc_helpy(display_long)|uniprotkb:minC(gene name)|psi-mi:minC(display_short)|uniprotkb:HP_1053(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329461|imex:IM-22256-709 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0Q7|interpro:IPR033120|interpro:IPR006683(Thioesterase superfamily)|refseq:NP_207684.1|ensemblbacteria:AAD07940(transcript)|ensemblbacteria:HP_0891(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006631"(fatty acid metabolic process)|go:"GO:0006637"(acyl-CoA metabolic process)|go:"GO:0036042"(long-chain fatty acyl-CoA binding)|go:"GO:0047617"(acyl-CoA hydrolase activity)|refseq:WP_001135603.1|interpro:IPR029069|interpro:IPR040170|uniprotkb:P0A0Q7(identity) refseq:WP_000921052.1|refseq:NP_207844.1|interpro:IPR005526(Septum formation inhibitor MinC, C-terminal)|interpro:IPR013033(Septum formation inhibitor MinC)|interpro:IPR016098(Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal)|interpro:IPR036145|ensemblbacteria:AAD08105(transcript)|ensemblbacteria:HP_1053(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0000917"(division septum assembly)|go:"GO:1901891"(regulation of cell septum assembly)|uniprotkb:O25693(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9D7in9xGLFSPEZxEwO5kHUu6E+085962 rogid:bj1yqCAycq4MJipngXWZ34uLzxY85962 intact-crc:252BE97B96A97CAD|rigid:X5mx5VRfpXoNIyRfFkpQwp6uMp0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25250 uniprotkb:P0A0Q7 intact:EBI-7560413|intact:MINT-169945|ensemblbacteria:AAD07573 intact:EBI-7532404|intact:MINT-181752|uniprotkb:O05729|ensemblbacteria:AAD07940 psi-mi:o25250_helpy(display_long)|uniprotkb:HP_0509(locus name) psi-mi:vdld_helpy(display_long)|uniprotkb:vdlD(gene name)|psi-mi:vdlD(display_short)|uniprotkb:HP_0891(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329443|imex:IM-22256-708 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25250|refseq:WP_000886845.1|refseq:NP_207306.1|ensemblbacteria:AAD07573(transcript)|ensemblbacteria:HP_0509(gene)|go:"GO:0008891"|go:"GO:0009339"(glycolate oxidase complex)|go:"GO:0071949"(FAD binding)|interpro:IPR004113(FAD-linked oxidase, C-terminal)|interpro:IPR004490(Glycolate oxidase subunit GlcD)|interpro:IPR006094(FAD linked oxidase, N-terminal)|interpro:IPR016164(FAD-linked oxidase-like, C-terminal)|interpro:IPR016166(FAD-binding, type 2)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR016171(Vanillyl-alcohol oxidase, C-terminal subdomain 2)|interpro:IPR036318|dip:DIP-3631N|uniprotkb:O25250(identity) mint:P0A0Q7|interpro:IPR033120|interpro:IPR006683(Thioesterase superfamily)|refseq:NP_207684.1|ensemblbacteria:AAD07940(transcript)|ensemblbacteria:HP_0891(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006631"(fatty acid metabolic process)|go:"GO:0006637"(acyl-CoA metabolic process)|go:"GO:0036042"(long-chain fatty acyl-CoA binding)|go:"GO:0047617"(acyl-CoA hydrolase activity)|refseq:WP_001135603.1|interpro:IPR029069|interpro:IPR040170|uniprotkb:P0A0Q7(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zXsVRtAqOHzhv/47T6Ej+weY5Pc85962 rogid:9D7in9xGLFSPEZxEwO5kHUu6E+085962 intact-crc:3993BEA06DBC6756|rigid:cOjSuiFzXT9NravroxseseCHUEw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0R3 uniprotkb:Q9ZKK8 intact:EBI-7508075|intact:MINT-173683|uniprotkb:P48225|ensemblbacteria:AAD07081 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:ch10_helpy(display_long)|uniprotkb:groES(gene name)|psi-mi:groES(display_short)|uniprotkb:10 kDa chaperonin(gene name synonym)|uniprotkb:Chaperonin-10(gene name synonym)|uniprotkb:groS(gene name synonym)|uniprotkb:hsp10(gene name synonym)|uniprotkb:hspA(gene name synonym)|uniprotkb:mopB(gene name synonym)|uniprotkb:HP_0011(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329479|imex:IM-22256-710 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0R3|interpro:IPR011032(GroES-like)|interpro:IPR020818|interpro:IPR018369|refseq:NP_206813.1|refseq:WP_000671934.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051082"(unfolded protein binding)|go:"GO:0051085"(chaperone cofactor-dependent protein refolding)|go:"GO:0051087"(chaperone binding)|go:"GO:0042802"(identical protein binding)|ensemblbacteria:AAD07081(transcript)|ensemblbacteria:HP_0011(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|interpro:IPR037124|uniprotkb:P0A0R3(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) crc64:5A965CD4C2FF014A|comment:mint|function:Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ke/5O3dHWuGYcikAvghNEjDPNT885962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:043358F203B701FB|rigid:TE5RALu8ajncxqZ32N+onHqPk6M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25498 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9262160|ensemblbacteria:AAD07873 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o25498_helpy(display_long)|uniprotkb:HP_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329515|imex:IM-22256-712 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000437145.1|refseq:NP_207613.1|ensemblbacteria:AAD07873(transcript)|ensemblbacteria:HP_0820(gene)|uniprotkb:O25498(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:cBhLCWEqc9/QdJfjtCvo7ltwdJs85962 intact-crc:DDDCA60D5E967467|rigid:O8jtTCG4cPs8YYJkANhw9Zt835M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25364 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9270287|ensemblbacteria:AAD07717 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o25364_helpy(display_long)|uniprotkb:HP_0647(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329497|imex:IM-22256-711 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000527526.1|refseq:NP_207441.1|ensemblbacteria:AAD07717(transcript)|ensemblbacteria:HP_0647(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25364(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:P9/+oLojeA/hG0oSjGJxN/nIV3Q85962 intact-crc:E4DECC6563BF0C5A|rigid:l7mvOQHGEVXbePHJntxnIwRrWg4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25792 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9271487|ensemblbacteria:AAD08224 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:nupc_helpy(display_long)|uniprotkb:nupC(gene name)|psi-mi:nupC(display_short)|uniprotkb:HP_1180(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329551|imex:IM-22256-714 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000577889.1|interpro:IPR002668(Na+ dependent nucleoside transporter)|interpro:IPR008276(Concentrative nucleoside transporter)|interpro:IPR011657(Na+ dependent nucleoside transporter, C-terminal)|interpro:IPR018270|refseq:NP_207971.1|ensemblbacteria:AAD08224(transcript)|ensemblbacteria:HP_1180(gene)|go:"GO:0005337"(nucleoside transmembrane transporter activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015293"(symporter activity)|go:"GO:1901642"(nucleoside transmembrane transport)|uniprotkb:O25792(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:uW+OMLc2zhIVjY1pLFLFP5uUrkM85962 intact-crc:65896D8E045C273D|rigid:Jme0sKhy5EDldUKWXiHd2SWiUbc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25546 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329533|imex:IM-22256-713 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:EF5A73AA5AB36363|rigid:8WXi1RT4b/Q2JqhHKoHdlw8bttQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25853 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-7541238|intact:MINT-174977|ensemblbacteria:AAD08309 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:nuod_helpy(display_long)|uniprotkb:HP_1263(locus name)|uniprotkb:nuoD(gene name)|psi-mi:nuoD(display_short)|uniprotkb:NADH dehydrogenase I subunit D(gene name synonym)|uniprotkb:NDH-1 subunit D(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329569|imex:IM-22256-715 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) mint:O25853|refseq:WP_000068242.1|refseq:NP_208055.1|ensemblbacteria:AAD08309(transcript)|ensemblbacteria:HP_1263(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|go:"GO:0051287"(NAD binding)|interpro:IPR001135(NADH-ubiquinone oxidoreductase, chain 49kDa)|interpro:IPR022885|interpro:IPR029014|dip:DIP-3327N|uniprotkb:O25853(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:x79NIlqScNWcKrxY4zR/KZK5ARs85962 intact-crc:97624E9009E9A930|rigid:iM98Bkkrq7q6fInbj4to6kbxFI0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:Q9ZKW4 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9261600|ensemblbacteria:AAD06393 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:q9zkw4_helpj(display_long)|uniprotkb:jhp_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329605|imex:IM-22256-717 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) interpro:IPR002495(Glycosyl transferase, family 8)|interpro:IPR029044|ensemblbacteria:AAD06393(transcript)|ensemblbacteria:jhp_0820(gene)|go:"GO:0016757"(glycosyltransferase activity)|uniprotkb:Q9ZKW4(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:zzpEOeYpHTao8r++Ew1T+LCI5jA85963 intact-crc:8A4C0B555F87103C|rigid:XfsOidIXDjmwNtebYmKhbGZaCjU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:O25869 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-7568244|intact:MINT-185628|ensemblbacteria:AAD08326 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:trpe_helpy(display_long)|uniprotkb:HP_1282(locus name)|uniprotkb:trpE(gene name)|psi-mi:trpE(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329587|imex:IM-22256-716 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000624398.1|mint:O25869|refseq:NP_208074.1|ensemblbacteria:AAD08326(transcript)|ensemblbacteria:HP_1282(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004049"(anthranilate synthase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR005257(Anthranilate synthase component I, TrpE)|interpro:IPR005801(Anthranilate synthase component I and chorismate binding protein)|interpro:IPR006805(Anthranilate synthase component I, N-terminal)|interpro:IPR015890(Chorismate binding, C-terminal)|interpro:IPR019999|dip:DIP-3432N|uniprotkb:O25869(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:eODPzT83iSUwQ2vz92ncSQTHO2k85962 intact-crc:A14C6DBDC4CA84FD|rigid:FOdby6vnWDiJ9fumhIsc4aMyvfQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:Q9ZLN8 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9271553|ensemblbacteria:AAD06111 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:q9zln8_helpj(display_long)|uniprotkb:jhp_0540(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329623|imex:IM-22256-718 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_001224732.1|interpro:IPR036412|interpro:IPR006439(HAD-superfamily hydrolase, subfamily IA, variant 1)|interpro:IPR023214|ensemblbacteria:AAD06111(transcript)|ensemblbacteria:jhp_0540(gene)|go:"GO:0016787"(hydrolase activity)|uniprotkb:Q9ZLN8(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:U+MKG/h+wX/PzlVmobCrnRUZ4XY85963 intact-crc:8589DE722D167A70|rigid:BdmTat0OXtkDnAnS788pkapGe/0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55977 uniprotkb:P0A0V0 intact:EBI-7723667|ensemblbacteria:AAD08555|intact:MINT-4077929 intact:EBI-9271571|uniprotkb:P53436|ensemblbacteria:AAD08494 psi-mi:nusa_helpy(display_long)|uniprotkb:nusA(gene name)|psi-mi:nusA(display_short)|uniprotkb:HP_1514(locus name) psi-mi:lpp20_helpy(display_long)|uniprotkb:lpp20(gene name)|psi-mi:lpp20(display_short)|uniprotkb:HP_1456(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329659|imex:IM-22256-720 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55977|ensemblbacteria:AAD08555(transcript)|ensemblbacteria:HP_1514(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0031564"(transcription antitermination)|interpro:IPR003029(S1, RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR010213(Transcription termination factor NusA)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013735(Transcription factor NusA, N-terminal)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR022967|interpro:IPR025249|interpro:IPR030842|interpro:IPR036555|refseq:WP_000411646.1|refseq:NP_208305.1|dip:DIP-3664N|uniprotkb:P55977(identity) refseq:WP_000795978.1|interpro:IPR002217(Lipoprotein LPP20)|interpro:IPR024952|refseq:NP_208247.1|ensemblbacteria:AAD08494(transcript)|go:"GO:0009279"(cell outer membrane)|ensemblbacteria:HP_1456(gene)|uniprotkb:P0A0V0(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RTwa+hy08+YPTH/PON5T0ltkljM85962 rogid:+J2NrQ8kjNJtBXlIsf5mNRaaE4U85962 intact-crc:2F5CBD55B958751A|rigid:/zdjDQFA+iQC3JA0+n651jzpjXQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25488 uniprotkb:P0A0V0 intact:EBI-9263014|ensemblbacteria:AAD07855 intact:EBI-9271571|uniprotkb:P53436|ensemblbacteria:AAD08494 psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:lpp20_helpy(display_long)|uniprotkb:lpp20(gene name)|psi-mi:lpp20(display_short)|uniprotkb:HP_1456(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329641|imex:IM-22256-719 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) refseq:WP_000795978.1|interpro:IPR002217(Lipoprotein LPP20)|interpro:IPR024952|refseq:NP_208247.1|ensemblbacteria:AAD08494(transcript)|go:"GO:0009279"(cell outer membrane)|ensemblbacteria:HP_1456(gene)|uniprotkb:P0A0V0(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 rogid:+J2NrQ8kjNJtBXlIsf5mNRaaE4U85962 intact-crc:7B4EEC2BF56BD1D0|rigid:DBaH6RtC3940GDfrk/BsRm3Wio4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0V6 uniprotkb:O06914 intact:EBI-7512037|uniprotkb:Q48251|intact:MINT-160454|ensemblbacteria:AAD08471 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:hpn_helpy(display_long)|uniprotkb:hpn(gene name)|psi-mi:hpn(display_short)|uniprotkb:HP_1427(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329677|imex:IM-22256-721 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0V6|ensemblbacteria:AAD08471(transcript)|ensemblbacteria:HP_1427(gene)|go:"GO:0046872"(metal ion binding)|uniprotkb:P0A0V6(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Strongly binds nickel and zinc. Binds other metals less strongly: cobalt > copper > cadmium > manganese. May act to increase, or at least to preserve, urease activity. Exact function is still unknown" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Hmyw9MH1eZZI9v1y3oH+O5iS0l885962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:37BDF44FFC0946EC|rigid:y1C7+N+tni7/brSPyesesdgqfok false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0V6 uniprotkb:O25310 intact:EBI-7512037|uniprotkb:Q48251|intact:MINT-160454|ensemblbacteria:AAD08471 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 psi-mi:hpn_helpy(display_long)|uniprotkb:hpn(gene name)|psi-mi:hpn(display_short)|uniprotkb:HP_1427(locus name) psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329695|imex:IM-22256-722 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0V6|ensemblbacteria:AAD08471(transcript)|ensemblbacteria:HP_1427(gene)|go:"GO:0046872"(metal ion binding)|uniprotkb:P0A0V6(identity) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Strongly binds nickel and zinc. Binds other metals less strongly: cobalt > copper > cadmium > manganese. May act to increase, or at least to preserve, urease activity. Exact function is still unknown" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Hmyw9MH1eZZI9v1y3oH+O5iS0l885962 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 intact-crc:3EF6E494CA67360B|rigid:X21C3XP6SoJ/K5l+3sSrckm/980 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25687 uniprotkb:P0A0X4 intact:EBI-7605525|intact:MINT-160910|ensemblbacteria:AAD08091 intact:EBI-7607319|uniprotkb:P56019|uniprotkb:Q9R787|intact:MINT-160916|ensemblbacteria:AAD08241 psi-mi:rimp_helpy(display_long)|uniprotkb:HP_1046(locus name)|uniprotkb:rimP(gene name)|psi-mi:rimP(display_short) psi-mi:rs12_helpy(display_long)|uniprotkb:rpsL(gene name)|psi-mi:rpsL(display_short)|uniprotkb:HP_1197(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329713|imex:IM-22256-723 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000162267.1|mint:O25687|refseq:NP_207836.1|ensemblbacteria:AAD08091(transcript)|ensemblbacteria:HP_1046(gene)|go:"GO:0000028"(ribosomal small subunit assembly)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|interpro:IPR003728(Protein of unknown function DUF150)|interpro:IPR028989|interpro:IPR028998|interpro:IPR035956|dip:DIP-3627N|uniprotkb:O25687(identity) refseq:WP_001142321.1|interpro:IPR005679(Ribosomal protein S12, bacterial-type)|interpro:IPR006032(Ribosomal protein S12/S23)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|mint:P0A0X4|refseq:NP_207988.1|ensemblbacteria:AAD08241(transcript)|ensemblbacteria:HP_1197(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0046677"(response to antibiotic)|uniprotkb:P0A0X4(identity) psi-mi:"MI:0469"(intact) comment:mint function:With S4 and S5 plays an important role in translational accuracy|comment:mint|function:Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb0PolTj0VOBI57lKdAFefuz9Fk85962 rogid:nGLO1EcHlMoe/ASWRqCunOgMDOo85962 intact-crc:1AB3072463E55D57|rigid:RhXMZklk1XrepmyFuiVYHmQSQzI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P14916 uniprotkb:O25664 intact:EBI-7737170|ensemblbacteria:AAD07144|intact:MINT-180633 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:ure23_helpy(display_long)|uniprotkb:ureA(gene name)|psi-mi:ureA(display_short)|uniprotkb:hpuA(gene name synonym)|uniprotkb:HP_0073(locus name)|uniprotkb:Urea amidohydrolase subunit alpha(gene name synonym) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329731|imex:IM-22256-724 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07144(transcript)|ensemblbacteria:HP_0073(gene)|go:"GO:0009039"(urease activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0035550"(urease complex)|go:"GO:0043419"(urea catabolic process)|interpro:IPR002019(Urease, beta subunit)|interpro:IPR002026(Urease, gamma subunit region)|interpro:IPR008223(Urease, gamma/beta subunit)|interpro:IPR036461|interpro:IPR036463|rcsb pdb:1E9Y|rcsb pdb:1E9Z|mint:P14916|refseq:NP_206873.1|refseq:WP_000779223.1|dip:DIP-3146N|uniprotkb:P14916(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Ammonia produced by ureolysis increases the gastric pH thereby providing an environment permissive for colonization of the stomach - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:u+odCxJ3JQbwfrGujKllbNQ/8lg85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:5ECC8D60F6D378B3|rigid:3KyE1MMkGoG9KL5R7QqgCWW3+Hc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P25177 uniprotkb:P25177 intact:EBI-7507679|uniprotkb:Q6V395|intact:MINT-176642|ensemblbacteria:AAD07146 intact:EBI-7507679|uniprotkb:Q6V395|intact:MINT-176642|ensemblbacteria:AAD07146 psi-mi:glmm_helpy(display_long)|uniprotkb:HP_0075(locus name)|uniprotkb:glmM(gene name)|psi-mi:glmM(display_short)|uniprotkb:ureC(gene name synonym) psi-mi:glmm_helpy(display_long)|uniprotkb:HP_0075(locus name)|uniprotkb:glmM(gene name)|psi-mi:glmM(display_short)|uniprotkb:ureC(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329749|imex:IM-22256-725 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P25177|refseq:NP_206875.1|refseq:WP_000688400.1|ensemblbacteria:AAD07146(transcript)|ensemblbacteria:HP_0075(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004615"(phosphomannomutase activity)|go:"GO:0005829"(cytosol)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0006048"(UDP-N-acetylglucosamine biosynthetic process)|go:"GO:0008966"(phosphoglucosamine mutase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|interpro:IPR005841(Alpha-D-phosphohexomutase, N-terminal)|interpro:IPR005843(Alpha-D-phosphohexomutase, C-terminal)|interpro:IPR005844(Alpha-D-phosphohexomutase, alpha/beta/alpha domain I)|interpro:IPR005845(Alpha-D-phosphohexomutase, alpha/beta/alpha domain II)|interpro:IPR005846(Alpha-D-phosphohexomutase, alpha/beta/alpha domain III)|interpro:IPR006352(Phosphoglucosamine mutase)|interpro:IPR016055(Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III)|interpro:IPR016066(Alpha-D-phosphohexomutase, conserved site)|interpro:IPR036900|dip:DIP-3160N|uniprotkb:P25177(identity) mint:P25177|refseq:NP_206875.1|refseq:WP_000688400.1|ensemblbacteria:AAD07146(transcript)|ensemblbacteria:HP_0075(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004615"(phosphomannomutase activity)|go:"GO:0005829"(cytosol)|go:"GO:0005975"(carbohydrate metabolic process)|go:"GO:0006048"(UDP-N-acetylglucosamine biosynthetic process)|go:"GO:0008966"(phosphoglucosamine mutase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|interpro:IPR005841(Alpha-D-phosphohexomutase, N-terminal)|interpro:IPR005843(Alpha-D-phosphohexomutase, C-terminal)|interpro:IPR005844(Alpha-D-phosphohexomutase, alpha/beta/alpha domain I)|interpro:IPR005845(Alpha-D-phosphohexomutase, alpha/beta/alpha domain II)|interpro:IPR005846(Alpha-D-phosphohexomutase, alpha/beta/alpha domain III)|interpro:IPR006352(Phosphoglucosamine mutase)|interpro:IPR016055(Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III)|interpro:IPR016066(Alpha-D-phosphohexomutase, conserved site)|interpro:IPR036900|dip:DIP-3160N|uniprotkb:P25177(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate comment:mint|function:Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:328gbeNgSy9IJN7JGBo4JU1XsJQ85962 rogid:328gbeNgSy9IJN7JGBo4JU1XsJQ85962 intact-crc:1518B644F22C28BB|rigid:3B0Tu84IwiUQH08T6xQT+nSVg18 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25743 uniprotkb:P25178 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 intact:EBI-9271678|ensemblbacteria:AAD07145 psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:lspa_helpy(display_long)|uniprotkb:lspA(gene name)|psi-mi:lspA(display_short)|uniprotkb:Prolipoprotein signal peptidase(gene name synonym)|uniprotkb:Signal peptidase II(gene name synonym)|uniprotkb:ureD(gene name synonym)|uniprotkb:HP_0074(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329767|imex:IM-22256-726 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) refseq:WP_000921378.1|interpro:IPR001872(Peptidase A8, signal peptidase II)|refseq:NP_206874.1|ensemblbacteria:AAD07145(transcript)|ensemblbacteria:HP_0074(gene)|go:"GO:0004190"(aspartic-type endopeptidase activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|uniprotkb:P25178(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 rogid:lRvGq7OFiPinP6tQjumk98JRgYo85962 intact-crc:42219AB63A087C28|rigid:lcWB3vPHFfcVkCkziNoZEYICK3E false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P25178 uniprotkb:O25912 intact:EBI-9271678|ensemblbacteria:AAD07145 intact:EBI-9268958|ensemblbacteria:AAD08408 psi-mi:lspa_helpy(display_long)|uniprotkb:lspA(gene name)|psi-mi:lspA(display_short)|uniprotkb:Prolipoprotein signal peptidase(gene name synonym)|uniprotkb:Signal peptidase II(gene name synonym)|uniprotkb:ureD(gene name synonym)|uniprotkb:HP_0074(locus name) psi-mi:o25912_helpy(display_long)|uniprotkb:HP_1358(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329785|imex:IM-22256-727 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000921378.1|interpro:IPR001872(Peptidase A8, signal peptidase II)|refseq:NP_206874.1|ensemblbacteria:AAD07145(transcript)|ensemblbacteria:HP_0074(gene)|go:"GO:0004190"(aspartic-type endopeptidase activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|uniprotkb:P25178(identity) refseq:WP_000953192.1|refseq:NP_208150.1|ensemblbacteria:AAD08408(transcript)|ensemblbacteria:HP_1358(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25912(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lRvGq7OFiPinP6tQjumk98JRgYo85962 rogid:2nZmrBMZGRSynryx03OjQWwlpuc85962 intact-crc:BB87AC558DEDA87B|rigid:6ne+paxDYP+X7wipCIgeA4J5AH8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:P43312 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7573479|intact:MINT-165096|ensemblbacteria:AAD07454 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:sodf_helpy(display_long)|uniprotkb:sodB(gene name)|psi-mi:sodB(display_short)|uniprotkb:HP_0389(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329821|imex:IM-22256-729 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:P43312|ensemblbacteria:AAD07454(transcript)|ensemblbacteria:HP_0389(gene)|go:"GO:0004784"(superoxide dismutase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0071281"(cellular response to iron ion)|interpro:IPR001189(Manganese and iron superoxide dismutase)|interpro:IPR019831|interpro:IPR019832|interpro:IPR019833|interpro:IPR036324|rcsb pdb:3CEI|interpro:IPR036314|dip:DIP-3411N|refseq:NP_207187.1|uniprotkb:P43312(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" function:Destroys radicals which are normally produced within the cells and which are toxic to biological systems|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:15jjbbxOB6oJese2wTTl8jJIFdA85962 intact-crc:D2BA703A743EFEF3|rigid:JhXq2CzweYrZ1vk6oBgM7Z1z3HY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P25178 uniprotkb:O26083 intact:EBI-9271678|ensemblbacteria:AAD07145 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:lspa_helpy(display_long)|uniprotkb:lspA(gene name)|psi-mi:lspA(display_short)|uniprotkb:Prolipoprotein signal peptidase(gene name synonym)|uniprotkb:Signal peptidase II(gene name synonym)|uniprotkb:ureD(gene name synonym)|uniprotkb:HP_0074(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329803|imex:IM-22256-728 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000921378.1|interpro:IPR001872(Peptidase A8, signal peptidase II)|refseq:NP_206874.1|ensemblbacteria:AAD07145(transcript)|ensemblbacteria:HP_0074(gene)|go:"GO:0004190"(aspartic-type endopeptidase activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|uniprotkb:P25178(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lRvGq7OFiPinP6tQjumk98JRgYo85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:2B6D7006D54EDD17|rigid:z1eLXsItbDHJsXwGkzawbOx/jj4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:P43313 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-7678903|ensemblbacteria:AAD07308|uniprotkb:Q9F7B8|uniprotkb:Q9F7B5|uniprotkb:Q9F7B9|uniprotkb:Q9KW50|uniprotkb:Q9F7B7|uniprotkb:Q64EY0|uniprotkb:Q9L765|uniprotkb:Q9L763|uniprotkb:Q9L766|uniprotkb:Q9K2M7|uniprotkb:Q9L764|uniprotkb:Q9L762|uniprotkb:Q9F7B4|uniprotkb:Q9F7B6|intact:MINT-173438|uniprotkb:Q932V4|uniprotkb:Q9K2U7 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:dps_helpy(display_long)|uniprotkb:HP_0243(locus name)|uniprotkb:dps(gene name)|psi-mi:dps(display_short)|uniprotkb:napA(gene name synonym)|uniprotkb:Neutrophil-activating protein A(gene name synonym)|uniprotkb:HP-NAP(gene name synonym)|uniprotkb:Bacterioferritin(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329839|imex:IM-22256-730 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) go:"GO:0016722"(oxidoreductase activity, acting on metal ions)|interpro:IPR002177(DNA-binding protein Dps)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR023188|rcsb pdb:1JI4|mint:P43313|ensemblbacteria:AAD07308(transcript)|ensemblbacteria:HP_0243(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|refseq:NP_207041.1|refseq:WP_000846461.1|dip:DIP-3296N|uniprotkb:P43313(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). Required for the survival in the presence of oxidative stress. Dps is also a virulence factor that activates neutrophils, mast cells and monocytes. It binds to neutrophil-glycosphingolipids and to sulfated carbohydrates on mucin. It might have a role in the accumulation of neutrophils and monocytes at the site of infection. Induces superoxide anion generation, adhesion and chemotaxis of neutrophils, through a pertussis toxin-sensitive pathway involving MAP kinases" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:2dXM7cdsOnwPgTpeJvQfWjSqyN085962 intact-crc:BB0B4A009B6FD832|rigid:i9TMKJXDWkPLtzWIEw0jZKIuPJY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P43313 uniprotkb:O25193 intact:EBI-7678903|ensemblbacteria:AAD07308|uniprotkb:Q9F7B8|uniprotkb:Q9F7B5|uniprotkb:Q9F7B9|uniprotkb:Q9KW50|uniprotkb:Q9F7B7|uniprotkb:Q64EY0|uniprotkb:Q9L765|uniprotkb:Q9L763|uniprotkb:Q9L766|uniprotkb:Q9K2M7|uniprotkb:Q9L764|uniprotkb:Q9L762|uniprotkb:Q9F7B4|uniprotkb:Q9F7B6|intact:MINT-173438|uniprotkb:Q932V4|uniprotkb:Q9K2U7 intact:EBI-9268368|ensemblbacteria:AAD07521 psi-mi:dps_helpy(display_long)|uniprotkb:HP_0243(locus name)|uniprotkb:dps(gene name)|psi-mi:dps(display_short)|uniprotkb:napA(gene name synonym)|uniprotkb:Neutrophil-activating protein A(gene name synonym)|uniprotkb:HP-NAP(gene name synonym)|uniprotkb:Bacterioferritin(gene name synonym) psi-mi:o25193_helpy(display_long)|uniprotkb:HP_0445(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329857|imex:IM-22256-731 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0016722"(oxidoreductase activity, acting on metal ions)|interpro:IPR002177(DNA-binding protein Dps)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR023188|rcsb pdb:1JI4|mint:P43313|ensemblbacteria:AAD07308(transcript)|ensemblbacteria:HP_0243(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|refseq:NP_207041.1|refseq:WP_000846461.1|dip:DIP-3296N|uniprotkb:P43313(identity) ensemblbacteria:AAD07521(transcript)|ensemblbacteria:HP_0445(gene)|uniprotkb:O25193(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). Required for the survival in the presence of oxidative stress. Dps is also a virulence factor that activates neutrophils, mast cells and monocytes. It binds to neutrophil-glycosphingolipids and to sulfated carbohydrates on mucin. It might have a role in the accumulation of neutrophils and monocytes at the site of infection. Induces superoxide anion generation, adhesion and chemotaxis of neutrophils, through a pertussis toxin-sensitive pathway involving MAP kinases" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2dXM7cdsOnwPgTpeJvQfWjSqyN085962 rogid:MA06LY47GdRMwnyLuB4R6iCKeyA85962 intact-crc:52C46C1FA4C9770D|rigid:i1ime1lwmHutIN9bVs1fu+MhfZM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P43313 uniprotkb:O34461 intact:EBI-7678903|ensemblbacteria:AAD07308|uniprotkb:Q9F7B8|uniprotkb:Q9F7B5|uniprotkb:Q9F7B9|uniprotkb:Q9KW50|uniprotkb:Q9F7B7|uniprotkb:Q64EY0|uniprotkb:Q9L765|uniprotkb:Q9L763|uniprotkb:Q9L766|uniprotkb:Q9K2M7|uniprotkb:Q9L764|uniprotkb:Q9L762|uniprotkb:Q9F7B4|uniprotkb:Q9F7B6|intact:MINT-173438|uniprotkb:Q932V4|uniprotkb:Q9K2U7 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:dps_helpy(display_long)|uniprotkb:HP_0243(locus name)|uniprotkb:dps(gene name)|psi-mi:dps(display_short)|uniprotkb:napA(gene name synonym)|uniprotkb:Neutrophil-activating protein A(gene name synonym)|uniprotkb:HP-NAP(gene name synonym)|uniprotkb:Bacterioferritin(gene name synonym) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329875|imex:IM-22256-732 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0016722"(oxidoreductase activity, acting on metal ions)|interpro:IPR002177(DNA-binding protein Dps)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR023188|rcsb pdb:1JI4|mint:P43313|ensemblbacteria:AAD07308(transcript)|ensemblbacteria:HP_0243(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|refseq:NP_207041.1|refseq:WP_000846461.1|dip:DIP-3296N|uniprotkb:P43313(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). Required for the survival in the presence of oxidative stress. Dps is also a virulence factor that activates neutrophils, mast cells and monocytes. It binds to neutrophil-glycosphingolipids and to sulfated carbohydrates on mucin. It might have a role in the accumulation of neutrophils and monocytes at the site of infection. Induces superoxide anion generation, adhesion and chemotaxis of neutrophils, through a pertussis toxin-sensitive pathway involving MAP kinases" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2dXM7cdsOnwPgTpeJvQfWjSqyN085962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:CF4E86C0318E7D28|rigid:Ew03kT7iYOtKYW+uCy8oS28x9RY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34754 uniprotkb:P43313 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7678903|ensemblbacteria:AAD07308|uniprotkb:Q9F7B8|uniprotkb:Q9F7B5|uniprotkb:Q9F7B9|uniprotkb:Q9KW50|uniprotkb:Q9F7B7|uniprotkb:Q64EY0|uniprotkb:Q9L765|uniprotkb:Q9L763|uniprotkb:Q9L766|uniprotkb:Q9K2M7|uniprotkb:Q9L764|uniprotkb:Q9L762|uniprotkb:Q9F7B4|uniprotkb:Q9F7B6|intact:MINT-173438|uniprotkb:Q932V4|uniprotkb:Q9K2U7 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:dps_helpy(display_long)|uniprotkb:HP_0243(locus name)|uniprotkb:dps(gene name)|psi-mi:dps(display_short)|uniprotkb:napA(gene name synonym)|uniprotkb:Neutrophil-activating protein A(gene name synonym)|uniprotkb:HP-NAP(gene name synonym)|uniprotkb:Bacterioferritin(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329893|imex:IM-22256-733 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) go:"GO:0016722"(oxidoreductase activity, acting on metal ions)|interpro:IPR002177(DNA-binding protein Dps)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR023188|rcsb pdb:1JI4|mint:P43313|ensemblbacteria:AAD07308(transcript)|ensemblbacteria:HP_0243(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|refseq:NP_207041.1|refseq:WP_000846461.1|dip:DIP-3296N|uniprotkb:P43313(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). Required for the survival in the presence of oxidative stress. Dps is also a virulence factor that activates neutrophils, mast cells and monocytes. It binds to neutrophil-glycosphingolipids and to sulfated carbohydrates on mucin. It might have a role in the accumulation of neutrophils and monocytes at the site of infection. Induces superoxide anion generation, adhesion and chemotaxis of neutrophils, through a pertussis toxin-sensitive pathway involving MAP kinases" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:2dXM7cdsOnwPgTpeJvQfWjSqyN085962 intact-crc:2788F29A692BF770|rigid:rp4ig25Z6N/8Q8NSO3ylRoyRqnk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P48370 uniprotkb:O25290 intact:EBI-7509054|intact:MINT-185350|ensemblbacteria:AAD07753 intact:EBI-9263938|ensemblbacteria:AAD07622 psi-mi:gyra_helpy(display_long)|uniprotkb:gyrA(gene name)|psi-mi:gyrA(display_short)|uniprotkb:HP_0701(locus name) psi-mi:dapf_helpy(display_long)|uniprotkb:dapF(gene name)|psi-mi:dapF(display_short)|uniprotkb:PLP-independent amino acid racemase(gene name synonym)|uniprotkb:HP_0566(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329911|imex:IM-22256-734 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P48370|refseq:NP_207495.1|refseq:WP_001153763.1|ensemblbacteria:AAD07753(transcript)|ensemblbacteria:HP_0701(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003918"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005694"(chromosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006265"(DNA topological change)|go:"GO:0009330"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex")|interpro:IPR002205(DNA topoisomerase, type IIA, subunit A or C-terminal)|interpro:IPR005743(DNA gyrase, subunit A)|interpro:IPR013757(DNA topoisomerase, type IIA, subunit A, alpha-helical)|interpro:IPR013758(DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta)|interpro:IPR013760(DNA topoisomerase, type IIA, central)|interpro:IPR035516|interpro:IPR006691(DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel)|dip:DIP-3353N|uniprotkb:P48370(identity) refseq:WP_000232462.1|interpro:IPR001653(Diaminopimelate epimerase)|interpro:IPR018510|refseq:NP_207361.1|ensemblbacteria:AAD07622(transcript)|ensemblbacteria:HP_0566(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008837"(diaminopimelate epimerase activity)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|uniprotkb:O25290(identity) psi-mi:"MI:0469"(intact) function:DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:39Si1CoRFTywNr8/kdJOHHbZahU85962 rogid:C/mjrCaBBQRuR/+zZbeIDy3WX3U85962 intact-crc:9CB174B3080E1783|rigid:e/Op64JTtZe0EfJH+ZiMINf/1xY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55992 uniprotkb:P48370 intact:EBI-7598175|intact:MINT-168943|ensemblbacteria:AAD07566 intact:EBI-7509054|intact:MINT-185350|ensemblbacteria:AAD07753 psi-mi:gyrb_helpy(display_long)|uniprotkb:gyrB(gene name)|psi-mi:gyrB(display_short)|uniprotkb:HP_0501(locus name) psi-mi:gyra_helpy(display_long)|uniprotkb:gyrA(gene name)|psi-mi:gyrA(display_short)|uniprotkb:HP_0701(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329929|imex:IM-22256-735 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55992|refseq:WP_001182024.1|refseq:NP_207298.1|ensemblbacteria:AAD07566(transcript)|ensemblbacteria:HP_0501(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003918"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005694"(chromosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006265"(DNA topological change)|go:"GO:0046872"(metal ion binding)|interpro:IPR001241(DNA topoisomerase, type IIA, subunit B or N-terminal)|interpro:IPR002288(DNA topoisomerase, type IIA, subunit B, C-terminal)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR006171(TOPRIM)|interpro:IPR011557(DNA gyrase, subunit B)|interpro:IPR013506(DNA topoisomerase, type IIA, subunit B, region 2)|interpro:IPR013759(DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta)|interpro:IPR013760(DNA topoisomerase, type IIA, central)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR018522|interpro:IPR020568|interpro:IPR034160|interpro:IPR036890|dip:DIP-3593N|uniprotkb:P55992(identity) mint:P48370|refseq:NP_207495.1|refseq:WP_001153763.1|ensemblbacteria:AAD07753(transcript)|ensemblbacteria:HP_0701(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003918"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005694"(chromosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006265"(DNA topological change)|go:"GO:0009330"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex")|interpro:IPR002205(DNA topoisomerase, type IIA, subunit A or C-terminal)|interpro:IPR005743(DNA gyrase, subunit A)|interpro:IPR013757(DNA topoisomerase, type IIA, subunit A, alpha-helical)|interpro:IPR013758(DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta)|interpro:IPR013760(DNA topoisomerase, type IIA, central)|interpro:IPR035516|interpro:IPR006691(DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel)|dip:DIP-3353N|uniprotkb:P48370(identity) psi-mi:"MI:0469"(intact) comment:mint|function:DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings function:DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U/ECZAX/dX8HZ1pFkcp4sHAS4aQ85962 rogid:39Si1CoRFTywNr8/kdJOHHbZahU85962 intact-crc:7FC50C70DB254975|rigid:bhjQH9qvvDPkq7xwsoswp/IagNg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P52093 uniprotkb:O26006 intact:EBI-7685873|ensemblbacteria:AAD07712|intact:MINT-167098 intact:EBI-9260077|ensemblbacteria:AAD08511 psi-mi:ftn_helpy(display_long)|uniprotkb:ftnA(gene name)|psi-mi:ftnA(display_short)|uniprotkb:pfr(gene name synonym)|uniprotkb:HP_0653(locus name) psi-mi:o26006_helpy(display_long)|uniprotkb:HP_1471(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329947|imex:IM-22256-736 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P52093|refseq:WP_000949202.1|dip:DIP-3470N|ensemblbacteria:AAD07712(transcript)|ensemblbacteria:HP_0653(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006826"(iron ion transport)|go:"GO:0006880"(intracellular sequestering of iron ion)|go:"GO:0008198"(ferrous iron binding)|go:"GO:0008199"(ferric iron binding)|interpro:IPR001519(Ferritin, N-terminal)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR041719|rcsb pdb:5U1B|refseq:NP_207447.1|uniprotkb:P52093(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_208262.1|ensemblbacteria:AAD08511(transcript)|ensemblbacteria:HP_1471(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O26006(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Iron-storage protein - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AmYwZV5wIllcC92/nomMGURsRKQ85962 rogid:kutCG3yhuSFassWodi2b+4pXCZA85962 intact-crc:9F674E385FBC6B86|rigid:GLxKz5AU7Y82PhBZ7VKa4rs6PQw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34754 uniprotkb:P52093 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7685873|ensemblbacteria:AAD07712|intact:MINT-167098 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:ftn_helpy(display_long)|uniprotkb:ftnA(gene name)|psi-mi:ftnA(display_short)|uniprotkb:pfr(gene name synonym)|uniprotkb:HP_0653(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329965|imex:IM-22256-737 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) mint:P52093|refseq:WP_000949202.1|dip:DIP-3470N|ensemblbacteria:AAD07712(transcript)|ensemblbacteria:HP_0653(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006826"(iron ion transport)|go:"GO:0006880"(intracellular sequestering of iron ion)|go:"GO:0008198"(ferrous iron binding)|go:"GO:0008199"(ferric iron binding)|interpro:IPR001519(Ferritin, N-terminal)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR041719|rcsb pdb:5U1B|refseq:NP_207447.1|uniprotkb:P52093(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Iron-storage protein figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:AmYwZV5wIllcC92/nomMGURsRKQ85962 intact-crc:B27ABD60CE3C8777|rigid:66cKeLF68VTkcCmrcl0hQXzo9nk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55969 uniprotkb:O25113 intact:EBI-7511818|intact:MINT-168283|ensemblbacteria:AAD07844 intact:EBI-7633054|ensemblbacteria:AAD07417|intact:MINT-187451 psi-mi:hpaa_helpy(display_long)|uniprotkb:HP_0797(locus name)|uniprotkb:hpaA(gene name)|psi-mi:hpaA(display_short)|uniprotkb:N-acetylneuraminyllactose-binding fibrillar hemagglutinin receptor-binding subunit(gene name synonym)|uniprotkb:Flagellar sheath adhesin(gene name synonym) psi-mi:o25113_helpy(display_long)|uniprotkb:HP_0346(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330001|imex:IM-22256-739 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55969|refseq:WP_000646667.1|refseq:NP_207590.1|ensemblbacteria:AAD07844(transcript)|ensemblbacteria:HP_0797(gene)|go:"GO:0009279"(cell outer membrane)|interpro:IPR007876(Neuraminyllactose-binding haemagglutinin precursor)|interpro:IPR038531|dip:DIP-3518N|uniprotkb:P55969(identity) ensemblbacteria:AAD07417(transcript)|ensemblbacteria:HP_0346(gene)|mint:O25113|refseq:WP_010875469.1|dip:DIP-3740N|uniprotkb:O25113(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lA796pEufZSWFqDEdUfO9q9HFdQ85962 rogid:3tDHTPf4i6qTBg5T+5R4VwGUUfo85962 intact-crc:E035D348D8E48EFD|rigid:JQ4nLMeG+Moy2N6nyduOm9fSW8w false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P52093 uniprotkb:Q9ZJN3 intact:EBI-7685873|ensemblbacteria:AAD07712|intact:MINT-167098 intact:EBI-9264413|ensemblbacteria:AAD06844 psi-mi:ftn_helpy(display_long)|uniprotkb:ftnA(gene name)|psi-mi:ftnA(display_short)|uniprotkb:pfr(gene name synonym)|uniprotkb:HP_0653(locus name) psi-mi:q9zjn3_helpj(display_long)|uniprotkb:JHP1272(gene name)|psi-mi:JHP1272(display_short)|uniprotkb:jhp_1272(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9329983|imex:IM-22256-738 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P52093|refseq:WP_000949202.1|dip:DIP-3470N|ensemblbacteria:AAD07712(transcript)|ensemblbacteria:HP_0653(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006826"(iron ion transport)|go:"GO:0006880"(intracellular sequestering of iron ion)|go:"GO:0008198"(ferrous iron binding)|go:"GO:0008199"(ferric iron binding)|interpro:IPR001519(Ferritin, N-terminal)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR041719|rcsb pdb:5U1B|refseq:NP_207447.1|uniprotkb:P52093(identity) interpro:IPR003356(N-6 DNA methylase)|interpro:IPR029063|interpro:IPR041635|ensemblbacteria:AAD06844(transcript)|ensemblbacteria:jhp_1272(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZJN3(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Iron-storage protein - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AmYwZV5wIllcC92/nomMGURsRKQ85962 rogid:2Btvw0CrXOSJ1SBiIVCTxact1hc85963 intact-crc:30A0347AA4735BCE|rigid:0FaDH+rzQSwZQDLsxIk/gYOV8nM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55969 uniprotkb:O25257 intact:EBI-7511818|intact:MINT-168283|ensemblbacteria:AAD07844 intact:EBI-2506882|ensemblbacteria:AAD07588 psi-mi:hpaa_helpy(display_long)|uniprotkb:HP_0797(locus name)|uniprotkb:hpaA(gene name)|psi-mi:hpaA(display_short)|uniprotkb:N-acetylneuraminyllactose-binding fibrillar hemagglutinin receptor-binding subunit(gene name synonym)|uniprotkb:Flagellar sheath adhesin(gene name synonym) psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330019|imex:IM-22256-740 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55969|refseq:WP_000646667.1|refseq:NP_207590.1|ensemblbacteria:AAD07844(transcript)|ensemblbacteria:HP_0797(gene)|go:"GO:0009279"(cell outer membrane)|interpro:IPR007876(Neuraminyllactose-binding haemagglutinin precursor)|interpro:IPR038531|dip:DIP-3518N|uniprotkb:P55969(identity) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lA796pEufZSWFqDEdUfO9q9HFdQ85962 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 intact-crc:8303FFE920CEE05B|rigid:tFSwfxMejp8MaEZ8xpPbOLVbSAs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34461 uniprotkb:P55970 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-9271910|ensemblbacteria:AAD07179 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:grpe_helpy(display_long)|uniprotkb:grpE(gene name)|psi-mi:grpE(display_short)|uniprotkb:HSP-70 cofactor(gene name synonym)|uniprotkb:HP_0110(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330037|imex:IM-22256-741 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:WP_000650844.1|interpro:IPR000740(GrpE nucleotide exchange factor)|interpro:IPR009012(GrpE nucleotide exchange factor, head)|interpro:IPR013805(GrpE nucleotide exchange factor, coiled-coil)|refseq:NP_206910.1|ensemblbacteria:AAD07179(transcript)|ensemblbacteria:HP_0110(gene)|go:"GO:0000774"(adenyl-nucleotide exchange factor activity)|go:"GO:0005829"(cytosol)|go:"GO:0006457"(protein folding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0051082"(unfolded protein binding)|go:"GO:0051087"(chaperone binding)|uniprotkb:P55970(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:atQCYuEyxj8FXgO2dO6StPl5f6k85962 intact-crc:8BCF0E5E2D8A9E7A|rigid:ufwi/tPFvzOHT5DiTvR+Yd5rkSU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25775 uniprotkb:P55971 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 intact:EBI-9271929|ensemblbacteria:AAD07965 psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:g3p_helpy(display_long)|uniprotkb:gapA(gene name)|psi-mi:gapA(display_short)|uniprotkb:gap(gene name synonym)|uniprotkb:HP_0921(locus name)|uniprotkb:NAD-dependent glyceraldehyde-3-phosphate dehydrogenase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330055|imex:IM-22256-742 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) refseq:WP_000688567.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:NP_207713.1|ensemblbacteria:AAD07965(transcript)|ensemblbacteria:HP_0921(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:P55971(identity) psi-mi:"MI:0469"(intact) function:May have metalloprotease activity|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 rogid:o/mHytn4OtdOuzxONvF9MQmi2ck85962 intact-crc:00D2648BC3C0A20A|rigid:kAlivPCFEC9T1psakiqolGiL1Xs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:P55971 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9271929|ensemblbacteria:AAD07965 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:g3p_helpy(display_long)|uniprotkb:gapA(gene name)|psi-mi:gapA(display_short)|uniprotkb:gap(gene name synonym)|uniprotkb:HP_0921(locus name)|uniprotkb:NAD-dependent glyceraldehyde-3-phosphate dehydrogenase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330073|imex:IM-22256-743 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000688567.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:NP_207713.1|ensemblbacteria:AAD07965(transcript)|ensemblbacteria:HP_0921(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:P55971(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:o/mHytn4OtdOuzxONvF9MQmi2ck85962 intact-crc:D063F2F3BD23AFB6|rigid:30PBcf6oul9cvU2f6hBnCHaDOEo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55971 uniprotkb:P55971 intact:EBI-9271929|ensemblbacteria:AAD07965 intact:EBI-9271929|ensemblbacteria:AAD07965 psi-mi:g3p_helpy(display_long)|uniprotkb:gapA(gene name)|psi-mi:gapA(display_short)|uniprotkb:gap(gene name synonym)|uniprotkb:HP_0921(locus name)|uniprotkb:NAD-dependent glyceraldehyde-3-phosphate dehydrogenase(gene name synonym) psi-mi:g3p_helpy(display_long)|uniprotkb:gapA(gene name)|psi-mi:gapA(display_short)|uniprotkb:gap(gene name synonym)|uniprotkb:HP_0921(locus name)|uniprotkb:NAD-dependent glyceraldehyde-3-phosphate dehydrogenase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330091|imex:IM-22256-744 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000688567.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:NP_207713.1|ensemblbacteria:AAD07965(transcript)|ensemblbacteria:HP_0921(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:P55971(identity) refseq:WP_000688567.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:NP_207713.1|ensemblbacteria:AAD07965(transcript)|ensemblbacteria:HP_0921(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:P55971(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:o/mHytn4OtdOuzxONvF9MQmi2ck85962 rogid:o/mHytn4OtdOuzxONvF9MQmi2ck85962 intact-crc:84D9D4747E8738FB|rigid:+OMeY82cN4snkgMtLL4kJ46j94c false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24980 uniprotkb:P55976 intact:EBI-7552025|intact:MINT-165751|ensemblbacteria:AAD07248 intact:EBI-9271993|ensemblbacteria:AAD08249 psi-mi:psei_helpy(display_long)|uniprotkb:pseI(gene name)|psi-mi:pseI(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein I(gene name synonym)|uniprotkb:HP_0178(locus name) psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330127|imex:IM-22256-746 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941291.1|mint:O24980|refseq:NP_206977.1|ensemblbacteria:AAD07248(transcript)|ensemblbacteria:HP_0178(gene)|go:"GO:0016051"(carbohydrate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0047444"(N-acylneuraminate-9-phosphate synthase activity)|go:"GO:0070085"(glycosylation)|interpro:IPR006190(Antifreeze-like/N-acetylneuraminic acid synthase C-terminal)|interpro:IPR013132(N-acetylneuraminic acid synthase, N-terminal)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013974(SAF domain)|interpro:IPR020030|interpro:IPR036732|dip:DIP-3369N|uniprotkb:O24980(identity) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uZp/YwItniAjhnfvNYjPS7d1M+U85962 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 intact-crc:793C290808F7D5BB|rigid:+X9eULMkxt9X6pTxlFpviNJZFKI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94845 uniprotkb:P55971 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-9271929|ensemblbacteria:AAD07965 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:g3p_helpy(display_long)|uniprotkb:gapA(gene name)|psi-mi:gapA(display_short)|uniprotkb:gap(gene name synonym)|uniprotkb:HP_0921(locus name)|uniprotkb:NAD-dependent glyceraldehyde-3-phosphate dehydrogenase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330109|imex:IM-22256-745 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) refseq:WP_000688567.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:NP_207713.1|ensemblbacteria:AAD07965(transcript)|ensemblbacteria:HP_0921(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:P55971(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:o/mHytn4OtdOuzxONvF9MQmi2ck85962 intact-crc:B7E6D7D5F44615F9|rigid:hpWjYZt6X6mDX9mkHRx+Ng4Mqc8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55976 uniprotkb:O25756 intact:EBI-9271993|ensemblbacteria:AAD08249 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330145|imex:IM-22256-747 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:2560CFD44D92294E|rigid:MDTEZzkgL2mJPNrSLXbGLgdmG8g false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:P55976 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-9271993|ensemblbacteria:AAD08249 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330163|imex:IM-22256-748 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 intact-crc:3C7D0B2FC18042C2|rigid:XNvXVyrzoTsqicsdW+YeE+JgTnE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55976 uniprotkb:O25983 intact:EBI-9271993|ensemblbacteria:AAD08249 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330181|imex:IM-22256-749 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:A53A0B9594704897|rigid:+1jtozX+fSajssZyaevpJ7fabkk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZKJ1 uniprotkb:P55976 intact:EBI-9262335|ensemblbacteria:AAD06522 intact:EBI-9271993|ensemblbacteria:AAD08249 psi-mi:q9zkj1_helpj(display_long)|uniprotkb:jhp_0944(locus name) psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330199|imex:IM-22256-750 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06522(transcript)|ensemblbacteria:jhp_0944(gene)|uniprotkb:Q9ZKJ1(identity) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1R4utf6FSlcyXPNx5xhZw0DvxCU85963 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 intact-crc:EE93CA544FFA50B7|rigid:7EmOjNYg42Ci/Ezh/2nqOLf3GU4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55976 uniprotkb:Q9ZKJ9 intact:EBI-9271993|ensemblbacteria:AAD08249 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330217|imex:IM-22256-751 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:38999526E0D1C368|rigid:5ZGSd88hUVpjgAio+XfARcIXAvw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55984 uniprotkb:P55984 intact:EBI-9260982|ensemblbacteria:AAD08263 intact:EBI-9260982|ensemblbacteria:AAD08263 psi-mi:ispt_helpy(display_long)|uniprotkb:uppS(gene name)|psi-mi:uppS(display_short)|uniprotkb:HP_1221(locus name) psi-mi:ispt_helpy(display_long)|uniprotkb:uppS(gene name)|psi-mi:uppS(display_short)|uniprotkb:HP_1221(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330253|imex:IM-22256-753 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000370674.1|interpro:IPR001441(Di-trans-poly-cis-decaprenylcistransferase)|interpro:IPR018520|rcsb pdb:2D2R|rcsb pdb:2DTN|refseq:NP_208013.1|interpro:IPR036424|ensemblbacteria:AAD08263(transcript)|ensemblbacteria:HP_1221(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0002094"(polyprenyltransferase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008834"(di-trans,poly-cis-decaprenylcistransferase activity)|go:"GO:0016094"(polyprenol biosynthetic process)|go:"GO:0030145"(manganese ion binding)|uniprotkb:P55984(identity) refseq:WP_000370674.1|interpro:IPR001441(Di-trans-poly-cis-decaprenylcistransferase)|interpro:IPR018520|rcsb pdb:2D2R|rcsb pdb:2DTN|refseq:NP_208013.1|interpro:IPR036424|ensemblbacteria:AAD08263(transcript)|ensemblbacteria:HP_1221(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0002094"(polyprenyltransferase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008834"(di-trans,poly-cis-decaprenylcistransferase activity)|go:"GO:0016094"(polyprenol biosynthetic process)|go:"GO:0030145"(manganese ion binding)|uniprotkb:P55984(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6ysxKJJK+I3uVC22ihjbhYZ6yew85962 rogid:6ysxKJJK+I3uVC22ihjbhYZ6yew85962 intact-crc:418571AE57EC3371|rigid:nTDiAJgu8YImM/CHpTTMImlKWB8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZMH3 uniprotkb:P55976 intact:EBI-9265592|ensemblbacteria:AAD05823 intact:EBI-9271993|ensemblbacteria:AAD08249 psi-mi:q9zmh3_helpj(display_long)|uniprotkb:jhp_0247(locus name) psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330235|imex:IM-22256-752 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010882505.1|interpro:IPR041551|ensemblbacteria:AAD05823(transcript)|ensemblbacteria:jhp_0247(gene)|uniprotkb:Q9ZMH3(identity) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bBvE/oCHqYoN/0oAcM3TD1stXro85963 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 intact-crc:CE666D9880FE82FB|rigid:c0kpJwp6RkNLl2KhG3svquY5py4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55994 uniprotkb:O25605 intact:EBI-7495484|uniprotkb:O05733|intact:MINT-161980|ensemblbacteria:AAD07178 intact:EBI-7540455|intact:MINT-162381|ensemblbacteria:AAD08006 psi-mi:dnak_helpy(display_long)|uniprotkb:dnaK(gene name)|psi-mi:dnaK(display_short)|uniprotkb:HP_0109(locus name)|uniprotkb:Heat shock protein 70(gene name synonym)|uniprotkb:Heat shock 70 kDa protein(gene name synonym)|uniprotkb:HSP70(gene name synonym) psi-mi:o25605_helpy(display_long)|uniprotkb:HP_0951(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330271|imex:IM-22256-754 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55994|refseq:NP_206909.1|refseq:WP_000521014.1|ensemblbacteria:AAD07178(transcript)|ensemblbacteria:HP_0109(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006457"(protein folding)|go:"GO:0051082"(unfolded protein binding)|interpro:IPR012725(Chaperone DnaK)|interpro:IPR013126(Heat shock protein 70)|interpro:IPR018181|interpro:IPR029047|interpro:IPR029048|interpro:IPR043129|dip:DIP-3190N|uniprotkb:P55994(identity) refseq:WP_010875567.1|mint:O25605|refseq:NP_207743.1|ensemblbacteria:AAD08006(transcript)|ensemblbacteria:HP_0951(gene)|interpro:IPR022572|dip:DIP-3323N|uniprotkb:O25605(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Acts as a chaperone comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9mhQy2gMoHxdB6QuY9SVrfYuU5E85962 rogid:Fb8SuUfOPbxOJY2LGnuqfKHmmPA85962 intact-crc:A76C60D6FCCE300A|rigid:hq0gUMVMdxPoaQ41Phz+9uBGUmM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55996 uniprotkb:Q9ZM49 intact:EBI-9272129|ensemblbacteria:AAD08622 intact:EBI-9272133|ensemblbacteria:AAD05951 psi-mi:tsad_helpy(display_long)|uniprotkb:tsaD(gene name)|psi-mi:tsaD(display_short)|uniprotkb:N6-L-threonylcarbamoyladenine synthase(gene name synonym)|uniprotkb:gcp(gene name synonym)|uniprotkb:"t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD"(gene name synonym)|uniprotkb:tRNA threonylcarbamoyladenosine biosynthesis protein TsaD(gene name synonym)|uniprotkb:HP_1584(locus name) psi-mi:q9zm49_helpj(display_long)|uniprotkb:jhp_0374(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330289|imex:IM-22256-755 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000603684.1|interpro:IPR000905(Peptidase M22, glycoprotease)|interpro:IPR017860|interpro:IPR017861|interpro:IPR022450|refseq:NP_208375.1|interpro:IPR043129|ensemblbacteria:AAD08622(transcript)|ensemblbacteria:HP_1584(gene)|go:"GO:0002949"(tRNA threonylcarbamoyladenosine modification)|go:"GO:0005506"(iron ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0061711"("N(6)-L-threonylcarbamoyladenine synthase activity")|uniprotkb:P55996(identity) refseq:WP_000417938.1|interpro:IPR043129|ensemblbacteria:AAD05951(transcript)|ensemblbacteria:jhp_0374(gene)|uniprotkb:Q9ZM49(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:CnutMhIGZQ2FjUM2J/eTvt5MFSM85962 rogid:RDOEQWcmcHFnFNBWu26xurTPW9A85963 intact-crc:6AE0DB95EC07D6E3|rigid:t/Bazy8UMqrA2EBkcwNyEQmsPuY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55997 uniprotkb:P55997 intact:EBI-7695811|ensemblbacteria:AAD08489|intact:MINT-168910 intact:EBI-7695811|ensemblbacteria:AAD08489|intact:MINT-168910 psi-mi:rnpa_helpy(display_long)|uniprotkb:rnpA(gene name)|psi-mi:rnpA(display_short)|uniprotkb:HP_1448(locus name)|uniprotkb:Protein C5(gene name synonym) psi-mi:rnpa_helpy(display_long)|uniprotkb:rnpA(gene name)|psi-mi:rnpA(display_short)|uniprotkb:HP_1448(locus name)|uniprotkb:Protein C5(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330307|imex:IM-22256-756 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08489(transcript)|ensemblbacteria:HP_1448(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0001682"(tRNA 5'-leader removal)|go:"GO:0004526"(ribonuclease P activity)|go:"GO:0030677"(ribonuclease P complex)|go:"GO:0034414"(tRNA 3'-trailer cleavage, endonucleolytic)|go:"GO:0042781"(3'-tRNA processing endoribonuclease activity)|interpro:IPR000100(Bacterial ribonuclease P protein)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020539|interpro:IPR020568|mint:P55997|refseq:NP_208239.1|refseq:WP_001112484.1|dip:DIP-3737N|uniprotkb:P55997(identity) ensemblbacteria:AAD08489(transcript)|ensemblbacteria:HP_1448(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0001682"(tRNA 5'-leader removal)|go:"GO:0004526"(ribonuclease P activity)|go:"GO:0030677"(ribonuclease P complex)|go:"GO:0034414"(tRNA 3'-trailer cleavage, endonucleolytic)|go:"GO:0042781"(3'-tRNA processing endoribonuclease activity)|interpro:IPR000100(Bacterial ribonuclease P protein)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020539|interpro:IPR020568|mint:P55997|refseq:NP_208239.1|refseq:WP_001112484.1|dip:DIP-3737N|uniprotkb:P55997(identity) psi-mi:"MI:0469"(intact) comment:mint|function:RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme comment:mint|function:RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KndHzqQyjfH8thowKBFaT7jmyLU85962 rogid:KndHzqQyjfH8thowKBFaT7jmyLU85962 intact-crc:62AA8EC733C450FB|rigid:di64gjQxOu/wFgjpF2GgAg777r0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55997 uniprotkb:P56009 intact:EBI-7695811|ensemblbacteria:AAD08489|intact:MINT-168910 intact:EBI-9265742|ensemblbacteria:AAD08594 psi-mi:rnpa_helpy(display_long)|uniprotkb:rnpA(gene name)|psi-mi:rnpA(display_short)|uniprotkb:HP_1448(locus name)|uniprotkb:Protein C5(gene name synonym) psi-mi:rs2_helpy(display_long)|uniprotkb:rpsB(gene name)|psi-mi:rpsB(display_short)|uniprotkb:HP_1554(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330325|imex:IM-22256-757 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08489(transcript)|ensemblbacteria:HP_1448(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0001682"(tRNA 5'-leader removal)|go:"GO:0004526"(ribonuclease P activity)|go:"GO:0030677"(ribonuclease P complex)|go:"GO:0034414"(tRNA 3'-trailer cleavage, endonucleolytic)|go:"GO:0042781"(3'-tRNA processing endoribonuclease activity)|interpro:IPR000100(Bacterial ribonuclease P protein)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020539|interpro:IPR020568|mint:P55997|refseq:NP_208239.1|refseq:WP_001112484.1|dip:DIP-3737N|uniprotkb:P55997(identity) refseq:WP_000258283.1|interpro:IPR001865(Ribosomal protein S2)|interpro:IPR005706(Ribosomal protein S2, bacterial-type)|interpro:IPR018130|interpro:IPR023591|refseq:NP_208345.1|ensemblbacteria:AAD08594(transcript)|ensemblbacteria:HP_1554(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|uniprotkb:P56009(identity) psi-mi:"MI:0469"(intact) comment:mint|function:RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KndHzqQyjfH8thowKBFaT7jmyLU85962 rogid:OzIfZb6/oK3Wdm6uNucFtY2Kn+Y85962 intact-crc:D2A58F56AB0AE8ED|rigid:HSXC5ZTFF9Lj3Wz7o45IwRFD0vI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55997 uniprotkb:P56011 intact:EBI-7695811|ensemblbacteria:AAD08489|intact:MINT-168910 intact:EBI-7540525|intact:MINT-164265|ensemblbacteria:AAD08337 psi-mi:rnpa_helpy(display_long)|uniprotkb:rnpA(gene name)|psi-mi:rnpA(display_short)|uniprotkb:HP_1448(locus name)|uniprotkb:Protein C5(gene name synonym) psi-mi:rs4_helpy(display_long)|uniprotkb:rpsD(gene name)|psi-mi:rpsD(display_short)|uniprotkb:HP_1294(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330343|imex:IM-22256-758 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08489(transcript)|ensemblbacteria:HP_1448(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0001682"(tRNA 5'-leader removal)|go:"GO:0004526"(ribonuclease P activity)|go:"GO:0030677"(ribonuclease P complex)|go:"GO:0034414"(tRNA 3'-trailer cleavage, endonucleolytic)|go:"GO:0042781"(3'-tRNA processing endoribonuclease activity)|interpro:IPR000100(Bacterial ribonuclease P protein)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020539|interpro:IPR020568|mint:P55997|refseq:NP_208239.1|refseq:WP_001112484.1|dip:DIP-3737N|uniprotkb:P55997(identity) mint:P56011|refseq:WP_000135250.1|refseq:NP_208086.1|ensemblbacteria:AAD08337(transcript)|ensemblbacteria:HP_1294(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0045903"(positive regulation of translational fidelity)|interpro:IPR001912(Ribosomal protein S4)|interpro:IPR002942(RNA-binding S4)|interpro:IPR005709(Ribosomal protein S4, bacterial-type)|interpro:IPR018079|interpro:IPR022801|interpro:IPR036986|dip:DIP-3324N|uniprotkb:P56011(identity) psi-mi:"MI:0469"(intact) comment:mint|function:RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme comment:mint|function:One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit|function:With S5 and S12 plays an important role in translational accuracy figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KndHzqQyjfH8thowKBFaT7jmyLU85962 rogid:nJH43XAod16uIJlWTy/Mi0jAnIo85962 intact-crc:4A65C16FEA749E40|rigid:3RubNlA7K2WiMZcoCzLxg+dA62s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55997 uniprotkb:P56428 intact:EBI-7695811|ensemblbacteria:AAD08489|intact:MINT-168910 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 psi-mi:rnpa_helpy(display_long)|uniprotkb:rnpA(gene name)|psi-mi:rnpA(display_short)|uniprotkb:HP_1448(locus name)|uniprotkb:Protein C5(gene name synonym) psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330361|imex:IM-22256-759 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08489(transcript)|ensemblbacteria:HP_1448(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0001682"(tRNA 5'-leader removal)|go:"GO:0004526"(ribonuclease P activity)|go:"GO:0030677"(ribonuclease P complex)|go:"GO:0034414"(tRNA 3'-trailer cleavage, endonucleolytic)|go:"GO:0042781"(3'-tRNA processing endoribonuclease activity)|interpro:IPR000100(Bacterial ribonuclease P protein)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020539|interpro:IPR020568|mint:P55997|refseq:NP_208239.1|refseq:WP_001112484.1|dip:DIP-3737N|uniprotkb:P55997(identity) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) psi-mi:"MI:0469"(intact) comment:mint|function:RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KndHzqQyjfH8thowKBFaT7jmyLU85962 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 intact-crc:6F4CB52A0DFD07E7|rigid:OTFC4lXSd65K5VCmkpXoKu5YRuY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P66637 uniprotkb:P55997 intact:EBI-7698660|ensemblbacteria:AAD07153|uniprotkb:P56016|intact:MINT-4076780 intact:EBI-7695811|ensemblbacteria:AAD08489|intact:MINT-168910 psi-mi:rs9_helpy(display_long)|uniprotkb:rpsI(gene name)|psi-mi:rpsI(display_short)|uniprotkb:HP_0083(locus name) psi-mi:rnpa_helpy(display_long)|uniprotkb:rnpA(gene name)|psi-mi:rnpA(display_short)|uniprotkb:HP_1448(locus name)|uniprotkb:Protein C5(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330379|imex:IM-22256-760 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000754(Ribosomal protein S9)|ensemblbacteria:AAD07153(transcript)|ensemblbacteria:HP_0083(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0022627"(cytosolic small ribosomal subunit)|mint:P66637|refseq:WP_001227269.1|interpro:IPR020568|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|refseq:NP_206883.1|interpro:IPR020574|interpro:IPR023035|uniprotkb:P66637(identity) ensemblbacteria:AAD08489(transcript)|ensemblbacteria:HP_1448(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0001682"(tRNA 5'-leader removal)|go:"GO:0004526"(ribonuclease P activity)|go:"GO:0030677"(ribonuclease P complex)|go:"GO:0034414"(tRNA 3'-trailer cleavage, endonucleolytic)|go:"GO:0042781"(3'-tRNA processing endoribonuclease activity)|interpro:IPR000100(Bacterial ribonuclease P protein)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020539|interpro:IPR020568|mint:P55997|refseq:NP_208239.1|refseq:WP_001112484.1|dip:DIP-3737N|uniprotkb:P55997(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tqc1vYVKraG2ma7JS8CQnAv2urA85962 rogid:KndHzqQyjfH8thowKBFaT7jmyLU85962 intact-crc:488A1F692BA659D1|rigid:OLiPhbNDRShCsOtrQeYSBWPoFqY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25143 uniprotkb:P55998 intact:EBI-7496689|intact:MINT-188100|ensemblbacteria:AAD07450 intact:EBI-9272229|ensemblbacteria:AAD07148 psi-mi:o25143_helpy(display_long)|uniprotkb:HP_0381(locus name) psi-mi:rf1_helpy(display_long)|uniprotkb:prfA(gene name)|psi-mi:prfA(display_short)|uniprotkb:HP_0077(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330397|imex:IM-22256-761 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25143|refseq:NP_207179.1|ensemblbacteria:AAD07450(transcript)|ensemblbacteria:HP_0381(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0018364"(peptidyl-glutamine methylation)|go:"GO:0036009"(protein-glutamine N-methyltransferase activity)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR004556(Modification methylase HemK)|interpro:IPR007848(Methyltransferase small)|interpro:IPR029063|interpro:IPR040758|refseq:WP_000176078.1|dip:DIP-3113N|uniprotkb:O25143(identity) refseq:WP_000025135.1|interpro:IPR000352(Class I peptide chain release factor)|interpro:IPR004373(Peptide chain release factor 1)|interpro:IPR005139(PCRF)|refseq:NP_206877.1|ensemblbacteria:AAD07148(transcript)|ensemblbacteria:HP_0077(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016149"(translation release factor activity, codon specific)|uniprotkb:P55998(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LRQgwFLn5bet9wKPYx4wVbOlkUQ85962 rogid:sYbo0rTeSTGdT43Cx7zZxdwuN2c85962 intact-crc:3B3E6B4680C821BE|rigid:sJ7byljhrvbPmtpBRWl16ze5uNE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25245 uniprotkb:P55998 intact:EBI-9264829|ensemblbacteria:AAD07580 intact:EBI-9272229|ensemblbacteria:AAD07148 psi-mi:o25245_helpy(display_long)|uniprotkb:HP_0504(locus name) psi-mi:rf1_helpy(display_long)|uniprotkb:prfA(gene name)|psi-mi:prfA(display_short)|uniprotkb:HP_0077(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330415|imex:IM-22256-762 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07580(transcript)|ensemblbacteria:HP_0504(gene)|uniprotkb:O25245(identity) refseq:WP_000025135.1|interpro:IPR000352(Class I peptide chain release factor)|interpro:IPR004373(Peptide chain release factor 1)|interpro:IPR005139(PCRF)|refseq:NP_206877.1|ensemblbacteria:AAD07148(transcript)|ensemblbacteria:HP_0077(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016149"(translation release factor activity, codon specific)|uniprotkb:P55998(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OmW4837MeO5ViFwnKcsHURCKcgA85962 rogid:sYbo0rTeSTGdT43Cx7zZxdwuN2c85962 intact-crc:9AC2618B31133C0F|rigid:LiT0AfnUoNk8d2NXIzvFeosCM6Y false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P55998 uniprotkb:O25756 intact:EBI-9272229|ensemblbacteria:AAD07148 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:rf1_helpy(display_long)|uniprotkb:prfA(gene name)|psi-mi:prfA(display_short)|uniprotkb:HP_0077(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330433|imex:IM-22256-763 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000025135.1|interpro:IPR000352(Class I peptide chain release factor)|interpro:IPR004373(Peptide chain release factor 1)|interpro:IPR005139(PCRF)|refseq:NP_206877.1|ensemblbacteria:AAD07148(transcript)|ensemblbacteria:HP_0077(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016149"(translation release factor activity, codon specific)|uniprotkb:P55998(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:sYbo0rTeSTGdT43Cx7zZxdwuN2c85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:7119A52409B5E337|rigid:YYPd8U1UfsPFb/WndPjAi+RKxMo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56006 uniprotkb:P56006 intact:EBI-7723842|ensemblbacteria:AAD07743|intact:MINT-176385 intact:EBI-7723842|ensemblbacteria:AAD07743|intact:MINT-176385 psi-mi:scoa_helpy(display_long)|uniprotkb:scoA(gene name)|psi-mi:scoA(display_short)|uniprotkb:"Succinyl-CoA:3-oxoacid CoA-transferase"(gene name synonym)|uniprotkb:HP_0691(locus name) psi-mi:scoa_helpy(display_long)|uniprotkb:scoA(gene name)|psi-mi:scoA(display_short)|uniprotkb:"Succinyl-CoA:3-oxoacid CoA-transferase"(gene name synonym)|uniprotkb:HP_0691(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330451|imex:IM-22256-764 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56006|ensemblbacteria:AAD07743(transcript)|ensemblbacteria:HP_0691(gene)|go:"GO:0008260"(3-oxoacid CoA-transferase activity)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|interpro:IPR004163(Coenzyme A transferase binding site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012792(3-oxoacid CoA-transferase, subunit A)|interpro:IPR037171|rcsb pdb:3RRL|refseq:WP_001045154.1|refseq:NP_207485.1|dip:DIP-3481N|uniprotkb:P56006(identity) mint:P56006|ensemblbacteria:AAD07743(transcript)|ensemblbacteria:HP_0691(gene)|go:"GO:0008260"(3-oxoacid CoA-transferase activity)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|interpro:IPR004163(Coenzyme A transferase binding site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012792(3-oxoacid CoA-transferase, subunit A)|interpro:IPR037171|rcsb pdb:3RRL|refseq:WP_001045154.1|refseq:NP_207485.1|dip:DIP-3481N|uniprotkb:P56006(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jjo2wADecCPNpkz0CeJTLvbC6YI85962 rogid:jjo2wADecCPNpkz0CeJTLvbC6YI85962 intact-crc:B915E07AB682C09A|rigid:R8dcXQFiD+6RVxfR880Fl3jq5V8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56007 uniprotkb:P56006 intact:EBI-7724043|ensemblbacteria:AAD07744|intact:MINT-168328 intact:EBI-7723842|ensemblbacteria:AAD07743|intact:MINT-176385 psi-mi:scob_helpy(display_long)|uniprotkb:HP_0692(locus name)|uniprotkb:scoB(gene name)|psi-mi:scoB(display_short)|uniprotkb:"Succinyl-CoA:3-oxoacid CoA-transferase"(gene name synonym)|uniprotkb:OXCT B(gene name synonym) psi-mi:scoa_helpy(display_long)|uniprotkb:scoA(gene name)|psi-mi:scoA(display_short)|uniprotkb:"Succinyl-CoA:3-oxoacid CoA-transferase"(gene name synonym)|uniprotkb:HP_0691(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330469|imex:IM-22256-765 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56007|ensemblbacteria:AAD07744(transcript)|ensemblbacteria:HP_0692(gene)|go:"GO:0008260"(3-oxoacid CoA-transferase activity)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|interpro:IPR004164(Coenzyme A transferase active site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012791(3-oxoacid CoA-transferase, subunit B)|interpro:IPR037171|rcsb pdb:3RRL|refseq:WP_001206261.1|refseq:NP_207486.1|dip:DIP-3482N|uniprotkb:P56007(identity) mint:P56006|ensemblbacteria:AAD07743(transcript)|ensemblbacteria:HP_0691(gene)|go:"GO:0008260"(3-oxoacid CoA-transferase activity)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|interpro:IPR004163(Coenzyme A transferase binding site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012792(3-oxoacid CoA-transferase, subunit A)|interpro:IPR037171|rcsb pdb:3RRL|refseq:WP_001045154.1|refseq:NP_207485.1|dip:DIP-3481N|uniprotkb:P56006(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tFI0qmkC5kFEwTXRN6eX+lUS2Cc85962 rogid:jjo2wADecCPNpkz0CeJTLvbC6YI85962 intact-crc:21D67B94E367B2E1|rigid:jYUtVy/m2WygQibliT7qa8YXS/E false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56006 uniprotkb:P56007 intact:EBI-7723842|ensemblbacteria:AAD07743|intact:MINT-176385 intact:EBI-7724043|ensemblbacteria:AAD07744|intact:MINT-168328 psi-mi:scoa_helpy(display_long)|uniprotkb:scoA(gene name)|psi-mi:scoA(display_short)|uniprotkb:"Succinyl-CoA:3-oxoacid CoA-transferase"(gene name synonym)|uniprotkb:HP_0691(locus name) psi-mi:scob_helpy(display_long)|uniprotkb:HP_0692(locus name)|uniprotkb:scoB(gene name)|psi-mi:scoB(display_short)|uniprotkb:"Succinyl-CoA:3-oxoacid CoA-transferase"(gene name synonym)|uniprotkb:OXCT B(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330487|imex:IM-22256-766 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56006|ensemblbacteria:AAD07743(transcript)|ensemblbacteria:HP_0691(gene)|go:"GO:0008260"(3-oxoacid CoA-transferase activity)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|interpro:IPR004163(Coenzyme A transferase binding site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012792(3-oxoacid CoA-transferase, subunit A)|interpro:IPR037171|rcsb pdb:3RRL|refseq:WP_001045154.1|refseq:NP_207485.1|dip:DIP-3481N|uniprotkb:P56006(identity) mint:P56007|ensemblbacteria:AAD07744(transcript)|ensemblbacteria:HP_0692(gene)|go:"GO:0008260"(3-oxoacid CoA-transferase activity)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|interpro:IPR004164(Coenzyme A transferase active site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012791(3-oxoacid CoA-transferase, subunit B)|interpro:IPR037171|rcsb pdb:3RRL|refseq:WP_001206261.1|refseq:NP_207486.1|dip:DIP-3482N|uniprotkb:P56007(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jjo2wADecCPNpkz0CeJTLvbC6YI85962 rogid:tFI0qmkC5kFEwTXRN6eX+lUS2Cc85962 intact-crc:1FA739A911F6BB5F|rigid:jYUtVy/m2WygQibliT7qa8YXS/E false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56010 uniprotkb:O24992 intact:EBI-7532189|intact:MINT-187095|ensemblbacteria:AAD08352 intact:EBI-7531657|intact:MINT-162774|ensemblbacteria:AAD07273 psi-mi:rs3_helpy(display_long)|uniprotkb:rpsC(gene name)|psi-mi:rpsC(display_short)|uniprotkb:HP_1313(locus name) psi-mi:o24992_helpy(display_long)|uniprotkb:HP_0199(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330523|imex:IM-22256-768 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56010|refseq:NP_208105.1|interpro:IPR004044(K Homology, type 2)|interpro:IPR004087(K Homology)|interpro:IPR005704(Ribosomal protein S3, bacterial)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR018280|interpro:IPR036419|interpro:IPR001351(Ribosomal protein S3, C-terminal)|refseq:WP_000529962.1|ensemblbacteria:AAD08352(transcript)|ensemblbacteria:HP_1313(gene)|go:"GO:0003729"(mRNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022627"(cytosolic small ribosomal subunit)|dip:DIP-3279N|uniprotkb:P56010(identity) mint:O24992|refseq:NP_206998.1|refseq:WP_001159178.1|ensemblbacteria:AAD07273(transcript)|ensemblbacteria:HP_0199(gene)|dip:DIP-3276N|uniprotkb:O24992(identity) psi-mi:"MI:0469"(intact) function:Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qDR/W6v1WunoX2tfthtMSQP8HZc85962 rogid:PKlP/AP/XKmbGdxb+8EzrBJY7Ro85962 intact-crc:FCC91446EE1D3A18|rigid:Gkt358GeuGDmof5bNGIp137sT5M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56008 uniprotkb:O25605 intact:EBI-7495080|intact:MINT-163972|ensemblbacteria:AAD07462 intact:EBI-7540455|intact:MINT-162381|ensemblbacteria:AAD08006 psi-mi:rs1_helpy(display_long)|uniprotkb:rpsA(gene name)|psi-mi:rpsA(display_short)|uniprotkb:HP_0399(locus name) psi-mi:o25605_helpy(display_long)|uniprotkb:HP_0951(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330505|imex:IM-22256-767 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56008|refseq:NP_207197.1|refseq:WP_000034006.1|ensemblbacteria:AAD07462(transcript)|ensemblbacteria:HP_0399(gene)|go:"GO:0003729"(mRNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|interpro:IPR000110(Ribosomal protein S1)|interpro:IPR003029(S1, RNA binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022967|interpro:IPR035104|dip:DIP-3207N|uniprotkb:P56008(identity) refseq:WP_010875567.1|mint:O25605|refseq:NP_207743.1|ensemblbacteria:AAD08006(transcript)|ensemblbacteria:HP_0951(gene)|interpro:IPR022572|dip:DIP-3323N|uniprotkb:O25605(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wKZUozmXwJjkSPUH4i0DABjmnuw85962 rogid:Fb8SuUfOPbxOJY2LGnuqfKHmmPA85962 intact-crc:96E3269BCFCA6CEB|rigid:BqSa+tgYPv8g3eo8WlTVlLdMTvo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56011 uniprotkb:P56011 intact:EBI-7540525|intact:MINT-164265|ensemblbacteria:AAD08337 intact:EBI-7540525|intact:MINT-164265|ensemblbacteria:AAD08337 psi-mi:rs4_helpy(display_long)|uniprotkb:rpsD(gene name)|psi-mi:rpsD(display_short)|uniprotkb:HP_1294(locus name) psi-mi:rs4_helpy(display_long)|uniprotkb:rpsD(gene name)|psi-mi:rpsD(display_short)|uniprotkb:HP_1294(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330541|imex:IM-22256-769 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56011|refseq:WP_000135250.1|refseq:NP_208086.1|ensemblbacteria:AAD08337(transcript)|ensemblbacteria:HP_1294(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0045903"(positive regulation of translational fidelity)|interpro:IPR001912(Ribosomal protein S4)|interpro:IPR002942(RNA-binding S4)|interpro:IPR005709(Ribosomal protein S4, bacterial-type)|interpro:IPR018079|interpro:IPR022801|interpro:IPR036986|dip:DIP-3324N|uniprotkb:P56011(identity) mint:P56011|refseq:WP_000135250.1|refseq:NP_208086.1|ensemblbacteria:AAD08337(transcript)|ensemblbacteria:HP_1294(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0045903"(positive regulation of translational fidelity)|interpro:IPR001912(Ribosomal protein S4)|interpro:IPR002942(RNA-binding S4)|interpro:IPR005709(Ribosomal protein S4, bacterial-type)|interpro:IPR018079|interpro:IPR022801|interpro:IPR036986|dip:DIP-3324N|uniprotkb:P56011(identity) psi-mi:"MI:0469"(intact) comment:mint|function:One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit|function:With S5 and S12 plays an important role in translational accuracy comment:mint|function:One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit|function:With S5 and S12 plays an important role in translational accuracy figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nJH43XAod16uIJlWTy/Mi0jAnIo85962 rogid:nJH43XAod16uIJlWTy/Mi0jAnIo85962 intact-crc:21A4EF90DC3050A6|rigid:XVCZSJahLghEhkgeUVUw+Cuptjk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56428 uniprotkb:P56011 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 intact:EBI-7540525|intact:MINT-164265|ensemblbacteria:AAD08337 psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:rs4_helpy(display_long)|uniprotkb:rpsD(gene name)|psi-mi:rpsD(display_short)|uniprotkb:HP_1294(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330559|imex:IM-22256-770 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) mint:P56011|refseq:WP_000135250.1|refseq:NP_208086.1|ensemblbacteria:AAD08337(transcript)|ensemblbacteria:HP_1294(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0045903"(positive regulation of translational fidelity)|interpro:IPR001912(Ribosomal protein S4)|interpro:IPR002942(RNA-binding S4)|interpro:IPR005709(Ribosomal protein S4, bacterial-type)|interpro:IPR018079|interpro:IPR022801|interpro:IPR036986|dip:DIP-3324N|uniprotkb:P56011(identity) psi-mi:"MI:0469"(intact) comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision comment:mint|function:One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit|function:With S5 and S12 plays an important role in translational accuracy figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 rogid:nJH43XAod16uIJlWTy/Mi0jAnIo85962 intact-crc:048F4BD53BB9C901|rigid:r1NwFAEAZi3TeCbp5Mc1g83JmIQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56011 uniprotkb:P66637 intact:EBI-7540525|intact:MINT-164265|ensemblbacteria:AAD08337 intact:EBI-7698660|ensemblbacteria:AAD07153|uniprotkb:P56016|intact:MINT-4076780 psi-mi:rs4_helpy(display_long)|uniprotkb:rpsD(gene name)|psi-mi:rpsD(display_short)|uniprotkb:HP_1294(locus name) psi-mi:rs9_helpy(display_long)|uniprotkb:rpsI(gene name)|psi-mi:rpsI(display_short)|uniprotkb:HP_0083(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330577|imex:IM-22256-771 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56011|refseq:WP_000135250.1|refseq:NP_208086.1|ensemblbacteria:AAD08337(transcript)|ensemblbacteria:HP_1294(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0045903"(positive regulation of translational fidelity)|interpro:IPR001912(Ribosomal protein S4)|interpro:IPR002942(RNA-binding S4)|interpro:IPR005709(Ribosomal protein S4, bacterial-type)|interpro:IPR018079|interpro:IPR022801|interpro:IPR036986|dip:DIP-3324N|uniprotkb:P56011(identity) interpro:IPR000754(Ribosomal protein S9)|ensemblbacteria:AAD07153(transcript)|ensemblbacteria:HP_0083(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0022627"(cytosolic small ribosomal subunit)|mint:P66637|refseq:WP_001227269.1|interpro:IPR020568|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|refseq:NP_206883.1|interpro:IPR020574|interpro:IPR023035|uniprotkb:P66637(identity) psi-mi:"MI:0469"(intact) comment:mint|function:One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit|function:With S5 and S12 plays an important role in translational accuracy comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nJH43XAod16uIJlWTy/Mi0jAnIo85962 rogid:tqc1vYVKraG2ma7JS8CQnAv2urA85962 intact-crc:2349E1961DE29737|rigid:aNyhW2dVOWu4v9ifENlWXJP5OMU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P66459 uniprotkb:P56013 intact:EBI-7719400|ensemblbacteria:AAD08290|uniprotkb:P56025|intact:MINT-4077748 intact:EBI-7719651|ensemblbacteria:AAD08292|intact:MINT-162949 psi-mi:rs18_helpy(display_long)|uniprotkb:rpsR(gene name)|psi-mi:rpsR(display_short)|uniprotkb:HP_1244(locus name) psi-mi:rs6_helpy(display_long)|uniprotkb:rpsF(gene name)|psi-mi:rpsF(display_short)|uniprotkb:HP_1246(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330595|imex:IM-22256-772 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P66459|interpro:IPR001648(Ribosomal protein S18)|ensemblbacteria:AAD08290(transcript)|ensemblbacteria:HP_1244(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|refseq:WP_000440196.1|interpro:IPR018275|refseq:NP_208036.1|interpro:IPR036870|uniprotkb:P66459(identity) mint:P56013|ensemblbacteria:AAD08292(transcript)|ensemblbacteria:HP_1246(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|interpro:IPR000529(Ribosomal protein S6)|interpro:IPR014717(Translation elongation factor EF1B/ribosomal protein S6)|interpro:IPR020814|interpro:IPR020815|interpro:IPR035980|refseq:WP_001216713.1|refseq:NP_208038.1|dip:DIP-3684N|uniprotkb:P56013(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit comment:mint|function:Binds together with S18 to 16S ribosomal RNA figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Y2s89Xw9yRZgf5jcjNEjR78Ocko85962 rogid:QK//mTtnwf6fUg3vTDOhZGCcwQc85962 intact-crc:896547269031403B|rigid:MpKjCdWnzWnfyprYCVrULLzB08Y false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25775 uniprotkb:P56018 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 intact:EBI-9272413|ensemblbacteria:AAD08338 psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:rs11_helpy(display_long)|uniprotkb:rpsK(gene name)|psi-mi:rpsK(display_short)|uniprotkb:HP_1295(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330613|imex:IM-22256-773 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) refseq:WP_001129287.1|interpro:IPR036967|interpro:IPR001971(Ribosomal protein S11)|interpro:IPR018102|interpro:IPR019981|refseq:NP_208087.1|ensemblbacteria:AAD08338(transcript)|ensemblbacteria:HP_1295(gene)|go:"GO:0000028"(ribosomal small subunit assembly)|go:"GO:0000462"("maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|uniprotkb:P56018(identity) psi-mi:"MI:0469"(intact) function:May have metalloprotease activity|comment:mint - figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 rogid:47ygQDRkjVeYZmZzfJ4Trm7p92E85962 intact-crc:B181DC4B65A6C0E7|rigid:LsqwklHPwK9nYShTj3mu4UKXbdk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24853 uniprotkb:P56022 intact:EBI-7635518|ensemblbacteria:AAD07074|intact:MINT-164319 intact:EBI-9272429|uniprotkb:Q9X5H2|ensemblbacteria:AAD08082 psi-mi:nusb_helpy(display_long)|uniprotkb:nusB(gene name)|psi-mi:nusB(display_short)|uniprotkb:Antitermination factor NusB(gene name synonym)|uniprotkb:HP_0001(locus name) psi-mi:rs15_helpy(display_long)|uniprotkb:rpsO(gene name)|psi-mi:rpsO(display_short)|uniprotkb:HP_1040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330631|imex:IM-22256-774 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000235740.1|ensemblbacteria:AAD07074(transcript)|ensemblbacteria:HP_0001(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0031564"(transcription antitermination)|interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR011605(NusB antitermination factor)|interpro:IPR035926|mint:O24853|refseq:NP_206803.1|dip:DIP-3047N|uniprotkb:O24853(identity) refseq:WP_001207122.1|interpro:IPR000589(Ribosomal protein S15)|interpro:IPR005290(Ribosomal protein S15, bacterial-type)|interpro:IPR009068(S15/NS1, RNA-binding)|refseq:NP_207830.1|ensemblbacteria:AAD08082(transcript)|ensemblbacteria:HP_1040(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022627"(cytosolic small ribosomal subunit)|uniprotkb:P56022(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Involved in the transcription termination process - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:PQhiYWqCl3QjodzOzIzpwmyiFvs85962 rogid:bo/+CYVlzxxH6BP9BUWZgOH/qvA85962 intact-crc:F6D56860265733A6|rigid:No4SN7vXzwMjgBMvqkoNeGnsLH4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25956 uniprotkb:P56022 intact:EBI-7521870|intact:MINT-177734|ensemblbacteria:AAD08448 intact:EBI-9272429|uniprotkb:Q9X5H2|ensemblbacteria:AAD08082 psi-mi:biob_helpy(display_long)|uniprotkb:bioB(gene name)|psi-mi:bioB(display_short)|uniprotkb:HP_1406(locus name) psi-mi:rs15_helpy(display_long)|uniprotkb:rpsO(gene name)|psi-mi:rpsO(display_short)|uniprotkb:HP_1040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330649|imex:IM-22256-775 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25956|refseq:WP_001155649.1|refseq:NP_208197.1|ensemblbacteria:AAD08448(transcript)|ensemblbacteria:HP_1406(gene)|go:"GO:0004076"(biotin synthase activity)|go:"GO:0005506"(iron ion binding)|go:"GO:0009102"(biotin biosynthetic process)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR002684(Biotin synthase)|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR010722(Biotin and thiamin synthesis associated)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024177|dip:DIP-3241N|uniprotkb:O25956(identity) refseq:WP_001207122.1|interpro:IPR000589(Ribosomal protein S15)|interpro:IPR005290(Ribosomal protein S15, bacterial-type)|interpro:IPR009068(S15/NS1, RNA-binding)|refseq:NP_207830.1|ensemblbacteria:AAD08082(transcript)|ensemblbacteria:HP_1040(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022627"(cytosolic small ribosomal subunit)|uniprotkb:P56022(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:NKLF5PQ098dK9Q0CbNRo3qJKyM085962 rogid:bo/+CYVlzxxH6BP9BUWZgOH/qvA85962 intact-crc:42E2DC7C8C969FBC|rigid:CP9z7YRSDQfw+MxWBw9Fi4tNQsg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25979 uniprotkb:P56023 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-9269487|ensemblbacteria:AAD08199 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:rs16_helpy(display_long)|uniprotkb:rpsP(gene name)|psi-mi:rpsP(display_short)|uniprotkb:HP_1151(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330667|imex:IM-22256-776 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) refseq:WP_000216125.1|interpro:IPR000307(Ribosomal protein S16)|interpro:IPR020592|interpro:IPR023803|refseq:NP_207942.1|ensemblbacteria:AAD08199(transcript)|ensemblbacteria:HP_1151(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|uniprotkb:P56023(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:4ImMTFlzi1XOCiHcleq79EByZXw85962 intact-crc:4C7E0E08158A770B|rigid:a3yjjvtLbGeoBYSXqvPDxznqdDM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56023 uniprotkb:Q9ZKN9 intact:EBI-9269487|ensemblbacteria:AAD08199 intact:EBI-9272494|ensemblbacteria:AAD06474 psi-mi:rs16_helpy(display_long)|uniprotkb:rpsP(gene name)|psi-mi:rpsP(display_short)|uniprotkb:HP_1151(locus name) psi-mi:q9zkn9_helpj(display_long)|uniprotkb:jhp_0896(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330703|imex:IM-22256-778 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000216125.1|interpro:IPR000307(Ribosomal protein S16)|interpro:IPR020592|interpro:IPR023803|refseq:NP_207942.1|ensemblbacteria:AAD08199(transcript)|ensemblbacteria:HP_1151(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|uniprotkb:P56023(identity) ensemblbacteria:AAD06474(transcript)|ensemblbacteria:jhp_0896(gene)|uniprotkb:Q9ZKN9(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4ImMTFlzi1XOCiHcleq79EByZXw85962 rogid:wZWkUz1EqGakwJNkpztuvtP/0LU85963 intact-crc:2196F7F7557B997D|rigid:6ijRJI5/f2d+944ohZmX1oy7dAc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:P56023 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9269487|ensemblbacteria:AAD08199 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:rs16_helpy(display_long)|uniprotkb:rpsP(gene name)|psi-mi:rpsP(display_short)|uniprotkb:HP_1151(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330685|imex:IM-22256-777 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) refseq:WP_000216125.1|interpro:IPR000307(Ribosomal protein S16)|interpro:IPR020592|interpro:IPR023803|refseq:NP_207942.1|ensemblbacteria:AAD08199(transcript)|ensemblbacteria:HP_1151(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|uniprotkb:P56023(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:4ImMTFlzi1XOCiHcleq79EByZXw85962 intact-crc:E87C4ADBD454951A|rigid:EVGZ02rUextbpn6RRjhF0NUTkig false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56428 uniprotkb:P56028 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 intact:EBI-9272512|ensemblbacteria:AAD07628 psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:rs21_helpy(display_long)|uniprotkb:rpsU(gene name)|psi-mi:rpsU(display_short)|uniprotkb:HP_0562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330721|imex:IM-22256-779 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) refseq:WP_001117778.1|interpro:IPR001911(Ribosomal protein S21)|interpro:IPR018278|refseq:NP_207357.1|interpro:IPR038380|ensemblbacteria:AAD07628(transcript)|ensemblbacteria:HP_0562(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|uniprotkb:P56028(identity) psi-mi:"MI:0469"(intact) comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 rogid:2hlfof4JeCp1O58UYx1l+bRPRMo85962 intact-crc:80C97CAB4C5EB776|rigid:dD/Iq7cIu7iNjOWQ6MShQIsB8z4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56030 uniprotkb:O25885 intact:EBI-7498075|intact:MINT-162822|ensemblbacteria:AAD08355 intact:EBI-7602504|intact:MINT-170433|ensemblbacteria:AAD08377 psi-mi:rl2_helpy(display_long)|uniprotkb:rplB(gene name)|psi-mi:rplB(display_short)|uniprotkb:HP_1316(locus name) psi-mi:o25885_helpy(display_long)|uniprotkb:HP_1327(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330739|imex:IM-22256-780 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56030|refseq:WP_000985807.1|refseq:NP_208108.1|ensemblbacteria:AAD08355(transcript)|ensemblbacteria:HP_1316(gene)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0016740"(transferase activity)|go:"GO:0019843"(rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR002171(Ribosomal protein L2)|interpro:IPR005880(Ribosomal protein L2, bacterial-type)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR014726(Ribosomal protein L2, domain 3)|interpro:IPR022666|interpro:IPR022669|interpro:IPR022671|dip:DIP-3298N|uniprotkb:P56030(identity) mint:O25885|refseq:WP_000948089.1|refseq:NP_208119.1|ensemblbacteria:AAD08377(transcript)|ensemblbacteria:HP_1327(gene)|go:"GO:0015562"(efflux transmembrane transporter activity)|interpro:IPR003423(Outer membrane efflux protein)|dip:DIP-3616N|uniprotkb:O25885(identity) psi-mi:"MI:0469"(intact) comment:mint|function:One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DAHWIzZN77ksP2RpeWZMAvZmjpU85962 rogid:11nYh1c7qLBpREG+I2Mt0gx4DtU85962 intact-crc:C8A1DDCCB07E0940|rigid:9xduCHaj+20gSlESFM1ENFzFxb4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56154 uniprotkb:P56030 intact:EBI-7602661|intact:MINT-174705|ensemblbacteria:AAD08386 intact:EBI-7498075|intact:MINT-162822|ensemblbacteria:AAD08355 psi-mi:pgk_helpy(display_long)|uniprotkb:HP_1345(locus name)|uniprotkb:pgk(gene name)|psi-mi:pgk(display_short) psi-mi:rl2_helpy(display_long)|uniprotkb:rplB(gene name)|psi-mi:rplB(display_short)|uniprotkb:HP_1316(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330757|imex:IM-22256-781 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56154|refseq:WP_000880064.1|refseq:NP_208137.1|ensemblbacteria:AAD08386(transcript)|ensemblbacteria:HP_1345(gene)|go:"GO:0004618"(phosphoglycerate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0043531"(ADP binding)|interpro:IPR001576(Phosphoglycerate kinase)|interpro:IPR015824(Phosphoglycerate kinase, N-terminal)|interpro:IPR015911(Phosphoglycerate kinase, conserved site)|interpro:IPR036043|dip:DIP-3617N|uniprotkb:P56154(identity) mint:P56030|refseq:WP_000985807.1|refseq:NP_208108.1|ensemblbacteria:AAD08355(transcript)|ensemblbacteria:HP_1316(gene)|go:"GO:0002181"(cytoplasmic translation)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0016740"(transferase activity)|go:"GO:0019843"(rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR002171(Ribosomal protein L2)|interpro:IPR005880(Ribosomal protein L2, bacterial-type)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR014726(Ribosomal protein L2, domain 3)|interpro:IPR022666|interpro:IPR022669|interpro:IPR022671|dip:DIP-3298N|uniprotkb:P56030(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Zdkfv7kuRu0/jZwuno6cMp/Ackg85962 rogid:DAHWIzZN77ksP2RpeWZMAvZmjpU85962 intact-crc:D04CAE694782F242|rigid:kmCzZRF/sswHBixlcdL4qQduWxE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56032 uniprotkb:O06914 intact:EBI-7495042|intact:MINT-172477|ensemblbacteria:AAD08357 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:rl4_helpy(display_long)|uniprotkb:rplD(gene name)|psi-mi:rplD(display_short)|uniprotkb:HP_1318(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330775|imex:IM-22256-782 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56032|refseq:NP_208110.1|refseq:WP_000030195.1|ensemblbacteria:AAD08357(transcript)|ensemblbacteria:HP_1318(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|interpro:IPR002136(Ribosomal protein L4/L1e)|interpro:IPR013005(Ribosomal protein L4/L1e, bacterial-type)|interpro:IPR023574|dip:DIP-3117N|uniprotkb:P56032(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) function:One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome|comment:mint|function:Forms part of the polypeptide exit tunnel - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/BMy63bzWPPPcvsn7hngyjiUcKU85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:2477F13A82953CFF|rigid:1ht+eENiysefQlpHNwoMbb8XBCQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:P56032 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-7495042|intact:MINT-172477|ensemblbacteria:AAD08357 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:rl4_helpy(display_long)|uniprotkb:rplD(gene name)|psi-mi:rplD(display_short)|uniprotkb:HP_1318(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330793|imex:IM-22256-783 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) mint:P56032|refseq:NP_208110.1|refseq:WP_000030195.1|ensemblbacteria:AAD08357(transcript)|ensemblbacteria:HP_1318(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|interpro:IPR002136(Ribosomal protein L4/L1e)|interpro:IPR013005(Ribosomal protein L4/L1e, bacterial-type)|interpro:IPR023574|dip:DIP-3117N|uniprotkb:P56032(identity) psi-mi:"MI:0469"(intact) comment:mint function:One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome|comment:mint|function:Forms part of the polypeptide exit tunnel figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:/BMy63bzWPPPcvsn7hngyjiUcKU85962 intact-crc:0E3AC868BCC16510|rigid:fknqbotFU3UwiudsgovSRId2/GU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56032 uniprotkb:O34995 intact:EBI-7495042|intact:MINT-172477|ensemblbacteria:AAD08357 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:rl4_helpy(display_long)|uniprotkb:rplD(gene name)|psi-mi:rplD(display_short)|uniprotkb:HP_1318(locus name) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330811|imex:IM-22256-784 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56032|refseq:NP_208110.1|refseq:WP_000030195.1|ensemblbacteria:AAD08357(transcript)|ensemblbacteria:HP_1318(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|interpro:IPR002136(Ribosomal protein L4/L1e)|interpro:IPR013005(Ribosomal protein L4/L1e, bacterial-type)|interpro:IPR023574|dip:DIP-3117N|uniprotkb:P56032(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) function:One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome|comment:mint|function:Forms part of the polypeptide exit tunnel - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/BMy63bzWPPPcvsn7hngyjiUcKU85962 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:9BABF85D7E89B562|rigid:85fSSHo/ZExXlTLLzeK6O+j3Cdg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25253 uniprotkb:P56036 intact:EBI-7662907|ensemblbacteria:AAD07583|intact:MINT-161682 intact:EBI-7694828|ensemblbacteria:AAD08246|intact:MINT-164442 psi-mi:hslv_helpy(display_long)|uniprotkb:hslV(gene name)|psi-mi:hslV(display_short)|uniprotkb:HP_0515(locus name) psi-mi:rl10_helpy(display_long)|uniprotkb:rplJ(gene name)|psi-mi:rplJ(display_short)|uniprotkb:HP_1200(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330847|imex:IM-22256-786 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07583(transcript)|ensemblbacteria:HP_0515(gene)|go:"GO:0004298"(threonine-type endopeptidase activity)|go:"GO:0005839"(proteasome core complex)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051603"(proteolysis involved in cellular protein catabolic process)|interpro:IPR001353(20S proteasome, A and B subunits)|interpro:IPR022281|interpro:IPR023333|interpro:IPR029055|mint:O25253|refseq:WP_000461024.1|refseq:NP_207312.1|dip:DIP-3441N|uniprotkb:O25253(identity) ensemblbacteria:AAD08246(transcript)|ensemblbacteria:HP_1200(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|interpro:IPR001790(Ribosomal protein L10)|interpro:IPR002363(Ribosomal protein L10, eubacterial, conserved site)|interpro:IPR022973|interpro:IPR043141|mint:P56036|refseq:NP_207991.1|refseq:WP_001171739.1|dip:DIP-3052N|uniprotkb:P56036(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Protease subunit of a proteasome-like degradation complex comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:SoK3y6MMga+pPNH7yX6IQf5nmEY85962 rogid:0JHObOKNcQcY2J9nyslwuHd37kA85962 intact-crc:EB8D5D22203D4F34|rigid:9Z15K1gtT2olXDZvfQlg4oLxu/A false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56035 uniprotkb:O25448 intact:EBI-7562756|intact:MINT-178039|ensemblbacteria:AAD07582 intact:EBI-7499990|intact:MINT-160305|ensemblbacteria:AAD07803 psi-mi:rl9_helpy(display_long)|uniprotkb:rplI(gene name)|psi-mi:rplI(display_short)|uniprotkb:HP_0514(locus name) psi-mi:o25448_helpy(display_long)|uniprotkb:HP_0753(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330829|imex:IM-22256-785 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56035|refseq:WP_001862443.1|ensemblbacteria:AAD07582(transcript)|ensemblbacteria:HP_0514(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR000244(Ribosomal protein L9)|interpro:IPR009027(Ribosomal protein L9 N-terminal-like)|interpro:IPR020069|interpro:IPR020594|interpro:IPR036791|interpro:IPR036935|interpro:IPR020070|dip:DIP-3673N|refseq:NP_207311.1|uniprotkb:P56035(identity) mint:O25448|refseq:WP_001199081.1|refseq:NP_207546.1|ensemblbacteria:AAD07803(transcript)|ensemblbacteria:HP_0753(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR003713(Flagellar protein FliS)|interpro:IPR036584|rcsb pdb:3IQC|rcsb pdb:3K1I|dip:DIP-3458N|uniprotkb:O25448(identity) psi-mi:"MI:0469"(intact) function:Binds to the 23S rRNA|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bUIUSGLzs2e25SJRhwn3rsMJaRc85962 rogid:cteyYkuK7MMhuLoDSwYpQRstj3U85962 intact-crc:7D0C09A190F9C8F6|rigid:euBmP1Rqngeu5CmEV6lMZQNCO7s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56036 uniprotkb:P55834 intact:EBI-7694828|ensemblbacteria:AAD08246|intact:MINT-164442 intact:EBI-7696366|ensemblbacteria:AAD08245|intact:MINT-185711 psi-mi:rl10_helpy(display_long)|uniprotkb:rplJ(gene name)|psi-mi:rplJ(display_short)|uniprotkb:HP_1200(locus name) psi-mi:rl7_helpy(display_long)|uniprotkb:HP_1199(locus name)|uniprotkb:rplL(gene name)|psi-mi:rplL(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330865|imex:IM-22256-787 author score:A and B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08246(transcript)|ensemblbacteria:HP_1200(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|interpro:IPR001790(Ribosomal protein L10)|interpro:IPR002363(Ribosomal protein L10, eubacterial, conserved site)|interpro:IPR022973|interpro:IPR043141|mint:P56036|refseq:NP_207991.1|refseq:WP_001171739.1|dip:DIP-3052N|uniprotkb:P56036(identity) ensemblbacteria:AAD08245(transcript)|ensemblbacteria:HP_1199(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR000206(Ribosomal protein L7/L12)|interpro:IPR008932(Ribosomal protein L7/L12, oligomerisation)|interpro:IPR013823(Ribosomal protein L7/L12, C-terminal)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR036235|mint:P55834|refseq:NP_207990.1|refseq:WP_001018245.1|dip:DIP-3668N|uniprotkb:P55834(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation figure legend:Table S1|comment:"This interaction was detected using both 2-micron high-copy (confidence group B) and CEN low-copy (confidence group A) ori plasmid systems."|author-confidence:A and B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0JHObOKNcQcY2J9nyslwuHd37kA85962 rogid:QMsXDZxaNrKxgGuZGkLrKdz1lkk85962 intact-crc:B5BFE955FF07BC0F|rigid:30qmqUfiDRzHykXRZ+tLPwRtV0Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56039 uniprotkb:Q48271 intact:EBI-7497678|intact:MINT-165123|ensemblbacteria:AAD08349 intact:EBI-7497456|intact:MINT-161359|uniprotkb:Q48257|uniprotkb:O07682|ensemblbacteria:AAD08120 psi-mi:rl14_helpy(display_long)|uniprotkb:rplN(gene name)|psi-mi:rplN(display_short)|uniprotkb:HP_1309(locus name) psi-mi:copp_helpy(display_long)|uniprotkb:copP(gene name)|psi-mi:copP(display_short)|uniprotkb:HP_1073(locus name)|uniprotkb:Copper ion-binding protein(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330883|imex:IM-22256-788 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56039|refseq:NP_208101.1|ensemblbacteria:AAD08349(transcript)|ensemblbacteria:HP_1309(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|interpro:IPR000218(Ribosomal protein L14b/L23e)|interpro:IPR019972|interpro:IPR036853|interpro:IPR005745(Ribosomal protein L14, bacterial-type)|refseq:WP_000616110.1|dip:DIP-3640N|uniprotkb:P56039(identity) mint:Q48271|refseq:NP_207864.1|ensemblbacteria:AAD08120(transcript)|ensemblbacteria:HP_1073(gene)|go:"GO:0005507"(copper ion binding)|go:"GO:0006825"(copper ion transport)|interpro:IPR000428(Copper ion binding protein)|interpro:IPR006121(Heavy metal transport/detoxification protein)|interpro:IPR006122(Copper ion-binding)|interpro:IPR017969|interpro:IPR036163|rcsb pdb:1YG0|refseq:WP_000648265.1|dip:DIP-3638N|uniprotkb:Q48271(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome comment:mint|function:Part of a cation-transporting system which is associated with copper export out of the H.pylori cells figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:hQmg9nT7e7vTM2q1l+OYz0r/3+g85962 rogid:Nhbz6KfJ5t9scKhW8qZpQgimna085962 intact-crc:227F2CB16ACCCA98|rigid:nMekg5R3jzNXUQhaOUCxrkw5lcE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25521 uniprotkb:P56042 intact:EBI-7503998|intact:MINT-161863|ensemblbacteria:AAD07898 intact:EBI-9262301|ensemblbacteria:AAD08335 psi-mi:o25521_helpy(display_long)|uniprotkb:HP_0850(locus name) psi-mi:rl17_helpy(display_long)|uniprotkb:rplQ(gene name)|psi-mi:rplQ(display_short)|uniprotkb:HP_1292(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330901|imex:IM-22256-789 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25521|refseq:WP_010875553.1|refseq:NP_207643.1|ensemblbacteria:AAD07898(transcript)|ensemblbacteria:HP_0850(gene)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR004546(Restriction endonuclease, type I, EcoRI, M subunit)|interpro:IPR022749|interpro:IPR029063|interpro:IPR038333|go:"GO:0003677"(DNA binding)|dip:DIP-3358N|uniprotkb:O25521(identity) refseq:WP_001216119.1|interpro:IPR000456(Ribosomal protein L17)|refseq:NP_208084.1|interpro:IPR036373|ensemblbacteria:AAD08335(transcript)|ensemblbacteria:HP_1292(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56042(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3zNXyde6jJs8umSgKs89w8QFYrg85962 rogid:ooZamXxqutJrfs+ncATbxae1dRY85962 intact-crc:0A66FACD720C890A|rigid:bMoqT9XqEpSge2VH3WhT2O0Z4Xc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26016 uniprotkb:P56052 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9272681|ensemblbacteria:AAD08362 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:rl29_helpy(display_long)|uniprotkb:rpmC(gene name)|psi-mi:rpmC(display_short)|uniprotkb:HP_1311(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330919|imex:IM-22256-790 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) refseq:WP_000877884.1|interpro:IPR036049|interpro:IPR001854(Ribosomal protein L29)|interpro:IPR018254|refseq:NP_208103.1|ensemblbacteria:AAD08362(transcript)|ensemblbacteria:HP_1311(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56052(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:BVAfm0n4f2svjmVp1iruqAmwjIY85962 intact-crc:28C747C60A185D3E|rigid:X6Aj641wuzhlH7XtjSKf8g/XhMo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56052 uniprotkb:Q9ZKN9 intact:EBI-9272681|ensemblbacteria:AAD08362 intact:EBI-9272494|ensemblbacteria:AAD06474 psi-mi:rl29_helpy(display_long)|uniprotkb:rpmC(gene name)|psi-mi:rpmC(display_short)|uniprotkb:HP_1311(locus name) psi-mi:q9zkn9_helpj(display_long)|uniprotkb:jhp_0896(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330937|imex:IM-22256-791 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000877884.1|interpro:IPR036049|interpro:IPR001854(Ribosomal protein L29)|interpro:IPR018254|refseq:NP_208103.1|ensemblbacteria:AAD08362(transcript)|ensemblbacteria:HP_1311(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56052(identity) ensemblbacteria:AAD06474(transcript)|ensemblbacteria:jhp_0896(gene)|uniprotkb:Q9ZKN9(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:BVAfm0n4f2svjmVp1iruqAmwjIY85962 rogid:wZWkUz1EqGakwJNkpztuvtP/0LU85963 intact-crc:CFDA47F2AADB9C82|rigid:SghVLP2sCbpp47O/ZtqbLKAHhVQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56061 uniprotkb:P56061 intact:EBI-7515141|intact:MINT-161748|ensemblbacteria:AAD07079 intact:EBI-7515141|intact:MINT-161748|ensemblbacteria:AAD07079 psi-mi:panc_helpy(display_long)|uniprotkb:panC(gene name)|psi-mi:panC(display_short)|uniprotkb:HP_0006(locus name)|uniprotkb:Pantoate--beta-alanine ligase(gene name synonym)|uniprotkb:Pantoate-activating enzyme(gene name synonym) psi-mi:panc_helpy(display_long)|uniprotkb:panC(gene name)|psi-mi:panC(display_short)|uniprotkb:HP_0006(locus name)|uniprotkb:Pantoate--beta-alanine ligase(gene name synonym)|uniprotkb:Pantoate-activating enzyme(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330955|imex:IM-22256-792 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56061|refseq:WP_001264323.1|refseq:NP_206808.1|ensemblbacteria:AAD07079(transcript)|ensemblbacteria:HP_0006(gene)|go:"GO:0004592"(pantoate-beta-alanine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0015940"(pantothenate biosynthetic process)|interpro:IPR003721(Pantoate-beta-alanine ligase)|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR042176|dip:DIP-3102N|uniprotkb:P56061(identity) mint:P56061|refseq:WP_001264323.1|refseq:NP_206808.1|ensemblbacteria:AAD07079(transcript)|ensemblbacteria:HP_0006(gene)|go:"GO:0004592"(pantoate-beta-alanine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0015940"(pantothenate biosynthetic process)|interpro:IPR003721(Pantoate-beta-alanine ligase)|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR042176|dip:DIP-3102N|uniprotkb:P56061(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate comment:mint|function:Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:etN8IeHZK1Zr2qIlwtnpKAerMeM85962 rogid:etN8IeHZK1Zr2qIlwtnpKAerMeM85962 intact-crc:F9B45AA83E7A2190|rigid:6Sa5ZAhQMISd2MWoJCcqqFlj0Co false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56064 uniprotkb:O25664 intact:EBI-7534801|intact:MINT-181460|ensemblbacteria:AAD07082 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:dnag_helpy(display_long)|uniprotkb:HP_0012(locus name)|uniprotkb:dnaG(gene name)|psi-mi:dnaG(display_short) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330973|imex:IM-22256-793 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56064|refseq:WP_000601638.1|refseq:NP_206814.1|ensemblbacteria:AAD07082(transcript)|ensemblbacteria:HP_0012(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003896"(DNA primase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006269"(DNA replication, synthesis of RNA primer)|go:"GO:0008270"(zinc ion binding)|go:"GO:1990077"(primosome complex)|interpro:IPR002694(Zinc finger, CHC2-type)|interpro:IPR006171(TOPRIM)|interpro:IPR006295(DNA primase, DnaG)|interpro:IPR013264(DNA primase, catalytic core, N-terminal)|interpro:IPR016136(DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal)|interpro:IPR030846|interpro:IPR031988|interpro:IPR034151|interpro:IPR036977|interpro:IPR037068|rcsb pdb:4EHS|dip:DIP-3301N|uniprotkb:P56064(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint|function:DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rus680XMSt4GBMTNYUwA7EW97uA85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:CDDE97AE63BE2FC7|rigid:2lmCRp+88pJBHyz7dC7ltOt0ok8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56064 uniprotkb:O34754 intact:EBI-7534801|intact:MINT-181460|ensemblbacteria:AAD07082 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 psi-mi:dnag_helpy(display_long)|uniprotkb:HP_0012(locus name)|uniprotkb:dnaG(gene name)|psi-mi:dnaG(display_short) psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9330991|imex:IM-22256-794 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56064|refseq:WP_000601638.1|refseq:NP_206814.1|ensemblbacteria:AAD07082(transcript)|ensemblbacteria:HP_0012(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003896"(DNA primase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006269"(DNA replication, synthesis of RNA primer)|go:"GO:0008270"(zinc ion binding)|go:"GO:1990077"(primosome complex)|interpro:IPR002694(Zinc finger, CHC2-type)|interpro:IPR006171(TOPRIM)|interpro:IPR006295(DNA primase, DnaG)|interpro:IPR013264(DNA primase, catalytic core, N-terminal)|interpro:IPR016136(DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal)|interpro:IPR030846|interpro:IPR031988|interpro:IPR034151|interpro:IPR036977|interpro:IPR037068|rcsb pdb:4EHS|dip:DIP-3301N|uniprotkb:P56064(identity) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) psi-mi:"MI:0469"(intact) comment:mint|function:DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rus680XMSt4GBMTNYUwA7EW97uA85962 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 intact-crc:22C8B9649BAFF08F|rigid:h4x6ig26ZePhmRztaIirdSlJwR4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56422 uniprotkb:P56064 intact:EBI-7674385|ensemblbacteria:AAD07850|intact:MINT-169161 intact:EBI-7534801|intact:MINT-181460|ensemblbacteria:AAD07082 psi-mi:moae_helpy(display_long)|uniprotkb:moaE(gene name)|psi-mi:moaE(display_short)|uniprotkb:HP_0800(locus name)|uniprotkb:Molybdenum cofactor biosynthesis protein E(gene name synonym)|uniprotkb:Molybdopterin-converting factor large subunit(gene name synonym)|uniprotkb:Molybdopterin-converting factor subunit 2(gene name synonym)|uniprotkb:MPT synthase subunit 2(gene name synonym) psi-mi:dnag_helpy(display_long)|uniprotkb:HP_0012(locus name)|uniprotkb:dnaG(gene name)|psi-mi:dnaG(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331009|imex:IM-22256-795 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07850(transcript)|ensemblbacteria:HP_0800(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0030366"(molybdopterin synthase activity)|interpro:IPR003448(Molybdopterin biosynthesis MoaE)|interpro:IPR036563|rcsb pdb:3RPF|mint:P56422|refseq:NP_207593.1|refseq:WP_000912676.1|dip:DIP-3522N|uniprotkb:P56422(identity) mint:P56064|refseq:WP_000601638.1|refseq:NP_206814.1|ensemblbacteria:AAD07082(transcript)|ensemblbacteria:HP_0012(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003896"(DNA primase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006269"(DNA replication, synthesis of RNA primer)|go:"GO:0008270"(zinc ion binding)|go:"GO:1990077"(primosome complex)|interpro:IPR002694(Zinc finger, CHC2-type)|interpro:IPR006171(TOPRIM)|interpro:IPR006295(DNA primase, DnaG)|interpro:IPR013264(DNA primase, catalytic core, N-terminal)|interpro:IPR016136(DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal)|interpro:IPR030846|interpro:IPR031988|interpro:IPR034151|interpro:IPR036977|interpro:IPR037068|rcsb pdb:4EHS|dip:DIP-3301N|uniprotkb:P56064(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group comment:mint|function:DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mODLSKLl57eA0erPm1aXRjwb4rQ85962 rogid:rus680XMSt4GBMTNYUwA7EW97uA85962 intact-crc:B5D0EC4499F7818F|rigid:lqIWy74UqnSEAlh/T/ur1eZLZOA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:P56066 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7515733|intact:MINT-183175|ensemblbacteria:AAD07101 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:clps_helpy(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:HP_0032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331027|imex:IM-22256-796 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:P56066|refseq:WP_000784920.1|refseq:NP_206834.1|ensemblbacteria:AAD07101(transcript)|ensemblbacteria:HP_0032(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051087"(chaperone binding)|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|dip:DIP-3107N|uniprotkb:P56066(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint|function:Involved in the modulation of the specificity of the clpAP-mediated ATP-dependent protein degradation figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:24XzmUMqcQd9MuwsrPr67hcPl5s85962 intact-crc:CEBB37F678956F80|rigid:NwA9WbveCCBCZYq7IEVSiNrrff8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:P56066 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-7515733|intact:MINT-183175|ensemblbacteria:AAD07101 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:clps_helpy(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:HP_0032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331045|imex:IM-22256-797 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) mint:P56066|refseq:WP_000784920.1|refseq:NP_206834.1|ensemblbacteria:AAD07101(transcript)|ensemblbacteria:HP_0032(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051087"(chaperone binding)|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|dip:DIP-3107N|uniprotkb:P56066(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Involved in the modulation of the specificity of the clpAP-mediated ATP-dependent protein degradation figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:24XzmUMqcQd9MuwsrPr67hcPl5s85962 intact-crc:68DD880ED94A2721|rigid:yUdRRobCTthOm+DnhHYjiKJYZIE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24987 uniprotkb:P56068 intact:EBI-7530990|intact:MINT-159439|ensemblbacteria:AAD07265 intact:EBI-9272808|uniprotkb:P94841|ensemblbacteria:AAD07615 psi-mi:o24987_helpy(display_long)|uniprotkb:HP_0187(locus name) psi-mi:muri_helpy(display_long)|uniprotkb:murI(gene name)|psi-mi:murI(display_short)|uniprotkb:glr(gene name synonym)|uniprotkb:HP_0549(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331063|imex:IM-22256-798 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24987|ensemblbacteria:AAD07265(transcript)|ensemblbacteria:HP_0187(gene)|interpro:IPR004919(Protein of unknown function DUF262)|dip:DIP-3267N|uniprotkb:O24987(identity) interpro:IPR033134|refseq:WP_000690349.1|interpro:IPR001920(Asp/Glu racemase)|interpro:IPR004391(Glutamate racemase)|interpro:IPR015942(Asp/Glu/hydantoin racemase)|interpro:IPR018187|refseq:NP_207344.1|ensemblbacteria:AAD07615(transcript)|ensemblbacteria:HP_0549(gene)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008881"(glutamate racemase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0047661"(amino-acid racemase activity)|go:"GO:0071555"(cell wall organization)|uniprotkb:P56068(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:P1CE5ru6kMhgydYCXgBtjOw6mhw85962 rogid:AJ/6zwdeJ4uAgakZU311SvlBUwY85962 intact-crc:D586E9AF015D2FDD|rigid:ed+9AB0u3tinjZ+/wQD/mYEsffg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56068 uniprotkb:P56068 intact:EBI-9272808|uniprotkb:P94841|ensemblbacteria:AAD07615 intact:EBI-9272808|uniprotkb:P94841|ensemblbacteria:AAD07615 psi-mi:muri_helpy(display_long)|uniprotkb:murI(gene name)|psi-mi:murI(display_short)|uniprotkb:glr(gene name synonym)|uniprotkb:HP_0549(locus name) psi-mi:muri_helpy(display_long)|uniprotkb:murI(gene name)|psi-mi:murI(display_short)|uniprotkb:glr(gene name synonym)|uniprotkb:HP_0549(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331081|imex:IM-22256-799 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033134|refseq:WP_000690349.1|interpro:IPR001920(Asp/Glu racemase)|interpro:IPR004391(Glutamate racemase)|interpro:IPR015942(Asp/Glu/hydantoin racemase)|interpro:IPR018187|refseq:NP_207344.1|ensemblbacteria:AAD07615(transcript)|ensemblbacteria:HP_0549(gene)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008881"(glutamate racemase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0047661"(amino-acid racemase activity)|go:"GO:0071555"(cell wall organization)|uniprotkb:P56068(identity) interpro:IPR033134|refseq:WP_000690349.1|interpro:IPR001920(Asp/Glu racemase)|interpro:IPR004391(Glutamate racemase)|interpro:IPR015942(Asp/Glu/hydantoin racemase)|interpro:IPR018187|refseq:NP_207344.1|ensemblbacteria:AAD07615(transcript)|ensemblbacteria:HP_0549(gene)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008881"(glutamate racemase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0047661"(amino-acid racemase activity)|go:"GO:0071555"(cell wall organization)|uniprotkb:P56068(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AJ/6zwdeJ4uAgakZU311SvlBUwY85962 rogid:AJ/6zwdeJ4uAgakZU311SvlBUwY85962 intact-crc:C86B138EE0E97A10|rigid:A/d9I08QgzKYsgTUsGK1WRf9IUc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56120 uniprotkb:P56069 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9272843|ensemblbacteria:AAD07176 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:metb_helpy(display_long)|uniprotkb:metB(gene name)|psi-mi:metB(display_short)|uniprotkb:"O-succinylhomoserine (thiol)-lyase"(gene name synonym)|uniprotkb:HP_0106(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331099|imex:IM-22256-800 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) refseq:WP_001242837.1|interpro:IPR000277(Cys/Met metabolism, pyridoxal phosphate-dependent enzyme)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|rcsb pdb:4L0O|refseq:NP_206906.1|ensemblbacteria:AAD07176(transcript)|ensemblbacteria:HP_0106(gene)|go:"GO:0003962"(cystathionine gamma-synthase activity)|go:"GO:0004123"(cystathionine gamma-lyase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0009086"(methionine biosynthetic process)|go:"GO:0016846"(carbon-sulfur lyase activity)|go:"GO:0019343"(cysteine biosynthetic process via cystathionine)|go:"GO:0019346"(transsulfuration)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0102028"("cystathionine gamma-synthase activity (acts on O-phosphohomoserine)")|uniprotkb:P56069(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:1Y0H5Tgl2B+gdUNhJQkRMLqEypY85962 intact-crc:B94812DC2B38E775|rigid:DMMkpZmRzteB+a93W2kQp+JZMQA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56072 uniprotkb:O26047 intact:EBI-7502678|intact:MINT-170814|ensemblbacteria:AAD07202 intact:EBI-7639052|ensemblbacteria:AAD08559|intact:MINT-175273 psi-mi:sdhl_helpy(display_long)|uniprotkb:sdaA(gene name)|psi-mi:sdaA(display_short)|uniprotkb:HP_0132(locus name)|uniprotkb:L-serine deaminase(gene name synonym) psi-mi:o26047_helpy(display_long)|uniprotkb:HP_1518(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331117|imex:IM-22256-801 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56072|refseq:WP_000135967.1|refseq:NP_206932.1|ensemblbacteria:AAD07202(transcript)|ensemblbacteria:HP_0132(gene)|go:"GO:0003941"(L-serine ammonia-lyase activity)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR004644(Iron-sulphur-dependent L-serine dehydratase single chain form)|interpro:IPR005130(Serine dehydratase alpha chain)|interpro:IPR005131(Serine dehydratase beta chain)|interpro:IPR029009|dip:DIP-3172N|uniprotkb:P56072(identity) ensemblbacteria:AAD08559(transcript)|ensemblbacteria:HP_1518(gene)|mint:O26047|refseq:WP_000617669.1|refseq:NP_208309.1|dip:DIP-3752N|uniprotkb:O26047(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AEQRfJ5CxSSxR0+KbMslU+JDxmA85962 rogid:7IXQGYsBd7MHXiMCSpSjo5t9EaM85962 intact-crc:668639D3B43F15B8|rigid:Ziw/UapfiBWlnZGXVwu4VkWx+tI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25018 uniprotkb:P56074 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9272877|ensemblbacteria:AAD07232 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:hem2_helpy(display_long)|uniprotkb:hemB(gene name)|psi-mi:hemB(display_short)|uniprotkb:Porphobilinogen synthase(gene name synonym)|uniprotkb:HP_0163(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331135|imex:IM-22256-802 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) interpro:IPR030656|refseq:WP_000476591.1|interpro:IPR001731(Tetrapyrrole biosynthesis, porphobilinogen synthase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:NP_206962.1|ensemblbacteria:AAD07232(transcript)|ensemblbacteria:HP_0163(gene)|go:"GO:0004655"(porphobilinogen synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0008270"(zinc ion binding)|uniprotkb:P56074(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:eGf1WflkA2UUIVbqUEfW2xUPnMM85962 intact-crc:F08110B587BE3ABF|rigid:Jo+gB+bjVX6qz1myrgNARxzqBmI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56076 uniprotkb:P56076 intact:EBI-7558656|intact:MINT-166065|ensemblbacteria:AAD07261 intact:EBI-7558656|intact:MINT-166065|ensemblbacteria:AAD07261 psi-mi:tpis_helpy(display_long)|uniprotkb:HP_0194(locus name)|uniprotkb:tpiA(gene name)|psi-mi:tpiA(display_short)|uniprotkb:tpi(gene name synonym)|uniprotkb:Triose-phosphate isomerase(gene name synonym) psi-mi:tpis_helpy(display_long)|uniprotkb:HP_0194(locus name)|uniprotkb:tpiA(gene name)|psi-mi:tpiA(display_short)|uniprotkb:tpi(gene name synonym)|uniprotkb:Triose-phosphate isomerase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331153|imex:IM-22256-803 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56076|refseq:WP_000160988.1|refseq:NP_206993.1|ensemblbacteria:AAD07261(transcript)|ensemblbacteria:HP_0194(gene)|go:"GO:0004807"(triose-phosphate isomerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0019563"(glycerol catabolic process)|go:"GO:0046166"(glyceraldehyde-3-phosphate biosynthetic process)|interpro:IPR000652(Triosephosphate isomerase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020861|interpro:IPR022896|interpro:IPR035990|rcsb pdb:2JGQ|dip:DIP-3273N|uniprotkb:P56076(identity) mint:P56076|refseq:WP_000160988.1|refseq:NP_206993.1|ensemblbacteria:AAD07261(transcript)|ensemblbacteria:HP_0194(gene)|go:"GO:0004807"(triose-phosphate isomerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0019563"(glycerol catabolic process)|go:"GO:0046166"(glyceraldehyde-3-phosphate biosynthetic process)|interpro:IPR000652(Triosephosphate isomerase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020861|interpro:IPR022896|interpro:IPR035990|rcsb pdb:2JGQ|dip:DIP-3273N|uniprotkb:P56076(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:piv486lnWX4BAEQ4n5UQfxyZ7gw85962 rogid:piv486lnWX4BAEQ4n5UQfxyZ7gw85962 intact-crc:6107854254C8B1AC|rigid:XDavtu+V+DL/7NkKkGfvKsUVOwk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25878 uniprotkb:P56077 intact:EBI-7617898|intact:MINT-174132|ensemblbacteria:AAD08334 intact:EBI-7691478|ensemblbacteria:AAD08538|intact:MINT-184242 psi-mi:o25878_helpy(display_long)|uniprotkb:HP_1291(locus name) psi-mi:pth_helpy(display_long)|uniprotkb:HP_1497(locus name)|uniprotkb:pth(gene name)|psi-mi:pth(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331171|imex:IM-22256-804 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001149282.1|mint:O25878|refseq:NP_208083.1|ensemblbacteria:AAD08334(transcript)|ensemblbacteria:HP_1291(gene)|go:"GO:0004788"(thiamine diphosphokinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006772"(thiamine metabolic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:0016301"(kinase activity)|interpro:IPR006282(Thiamin pyrophosphokinase)|interpro:IPR007371(Thiamin pyrophosphokinase, catalytic region)|interpro:IPR036759|dip:DIP-3699N|uniprotkb:O25878(identity) refseq:WP_000173978.1|ensemblbacteria:AAD08538(transcript)|ensemblbacteria:HP_1497(gene)|go:"GO:0004045"(aminoacyl-tRNA hydrolase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006412"(translation)|interpro:IPR001328(Peptidyl-tRNA hydrolase)|interpro:IPR018171|interpro:IPR036416|mint:P56077|refseq:NP_208288.1|dip:DIP-3642N|uniprotkb:P56077(identity) psi-mi:"MI:0469"(intact) comment:mint function:The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+gZVP3dg7r1utx+xGirwuV54O2o85962 rogid:OcpsPPZq/DyZerG2qxs1jD3xRfM85962 intact-crc:E852B83DC090968A|rigid:BFyswDJsJpzSp3h2nO7Z0KuvLDA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56078 uniprotkb:O24921 intact:EBI-7699053|ensemblbacteria:AAD08537|intact:MINT-179762 intact:EBI-9260837|ensemblbacteria:AAD07170 psi-mi:rl25_helpy(display_long)|uniprotkb:HP_1496(locus name)|uniprotkb:rplY(gene name)|psi-mi:rplY(display_short)|uniprotkb:ctc(gene name synonym)|uniprotkb:General stress protein CTC(gene name synonym) psi-mi:o24921_helpy(display_long)|uniprotkb:HP_0095(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331189|imex:IM-22256-805 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56078|ensemblbacteria:AAD08537(transcript)|ensemblbacteria:HP_1496(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0008097"(5S rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR001021(Ribosomal protein L25)|interpro:IPR011035(Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding)|interpro:IPR020056|interpro:IPR020057|interpro:IPR029751|interpro:IPR037121|refseq:WP_000889331.1|refseq:NP_208287.1|dip:DIP-3750N|uniprotkb:P56078(identity) refseq:WP_001125803.1|refseq:NP_206895.1|ensemblbacteria:AAD07170(transcript)|ensemblbacteria:HP_0095(gene)|uniprotkb:O24921(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:BmrqLzZG1qzCZSc7aoUy868xEKA85962 rogid:u3bQBXJwbeu7kteqTqCQ4QqbviM85962 intact-crc:8476DEDA731EF433|rigid:UF8JyVZsXd5DPqCIVnzarPChdCM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56078 uniprotkb:O25448 intact:EBI-7699053|ensemblbacteria:AAD08537|intact:MINT-179762 intact:EBI-7499990|intact:MINT-160305|ensemblbacteria:AAD07803 psi-mi:rl25_helpy(display_long)|uniprotkb:HP_1496(locus name)|uniprotkb:rplY(gene name)|psi-mi:rplY(display_short)|uniprotkb:ctc(gene name synonym)|uniprotkb:General stress protein CTC(gene name synonym) psi-mi:o25448_helpy(display_long)|uniprotkb:HP_0753(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331207|imex:IM-22256-806 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56078|ensemblbacteria:AAD08537(transcript)|ensemblbacteria:HP_1496(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0008097"(5S rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR001021(Ribosomal protein L25)|interpro:IPR011035(Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding)|interpro:IPR020056|interpro:IPR020057|interpro:IPR029751|interpro:IPR037121|refseq:WP_000889331.1|refseq:NP_208287.1|dip:DIP-3750N|uniprotkb:P56078(identity) mint:O25448|refseq:WP_001199081.1|refseq:NP_207546.1|ensemblbacteria:AAD07803(transcript)|ensemblbacteria:HP_0753(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR003713(Flagellar protein FliS)|interpro:IPR036584|rcsb pdb:3IQC|rcsb pdb:3K1I|dip:DIP-3458N|uniprotkb:O25448(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:BmrqLzZG1qzCZSc7aoUy868xEKA85962 rogid:cteyYkuK7MMhuLoDSwYpQRstj3U85962 intact-crc:0BE137AB84F57574|rigid:WE9A6udo4SYMNNlryA2TdlNo1mE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56078 uniprotkb:Q9ZN16 intact:EBI-7699053|ensemblbacteria:AAD08537|intact:MINT-179762 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:rl25_helpy(display_long)|uniprotkb:HP_1496(locus name)|uniprotkb:rplY(gene name)|psi-mi:rplY(display_short)|uniprotkb:ctc(gene name synonym)|uniprotkb:General stress protein CTC(gene name synonym) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331225|imex:IM-22256-807 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56078|ensemblbacteria:AAD08537(transcript)|ensemblbacteria:HP_1496(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0008097"(5S rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR001021(Ribosomal protein L25)|interpro:IPR011035(Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding)|interpro:IPR020056|interpro:IPR020057|interpro:IPR029751|interpro:IPR037121|refseq:WP_000889331.1|refseq:NP_208287.1|dip:DIP-3750N|uniprotkb:P56078(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:BmrqLzZG1qzCZSc7aoUy868xEKA85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:29630F484289A638|rigid:SEdhNzkEodnL1MUL2wXWbASTJvM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56080 uniprotkb:Q9ZKJ9 intact:EBI-7498005|intact:MINT-175797|ensemblbacteria:AAD07185 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:y117_helpy(display_long)|uniprotkb:HP_0117(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331243|imex:IM-22256-808 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56080|refseq:WP_001040794.1|refseq:NP_206917.1|ensemblbacteria:AAD07185(transcript)|ensemblbacteria:HP_0117(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR040084|dip:DIP-3297N|uniprotkb:P56080(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mvwXeRFSMyeARvhr2WBwLaTB1RM85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:D3309812BF76C6E7|rigid:vpO/40yS8EpgAdzO3stmmfX0IaE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56081 uniprotkb:P56081 intact:EBI-9260966|ensemblbacteria:AAD07351 intact:EBI-9260966|ensemblbacteria:AAD07351 psi-mi:arob_helpy(display_long)|uniprotkb:aroB(gene name)|psi-mi:aroB(display_short)|uniprotkb:HP_0283(locus name) psi-mi:arob_helpy(display_long)|uniprotkb:aroB(gene name)|psi-mi:aroB(display_short)|uniprotkb:HP_0283(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331261|imex:IM-22256-809 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR030960|interpro:IPR030963|refseq:WP_001156090.1|interpro:IPR016037(3-dehydroquinate synthase AroB, subgroup)|rcsb pdb:3CLH|refseq:NP_207081.1|ensemblbacteria:AAD07351(transcript)|ensemblbacteria:HP_0283(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0046872"(metal ion binding)|uniprotkb:P56081(identity) interpro:IPR030960|interpro:IPR030963|refseq:WP_001156090.1|interpro:IPR016037(3-dehydroquinate synthase AroB, subgroup)|rcsb pdb:3CLH|refseq:NP_207081.1|ensemblbacteria:AAD07351(transcript)|ensemblbacteria:HP_0283(gene)|go:"GO:0000166"(nucleotide binding)|go:"GO:0003856"(3-dehydroquinate synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0046872"(metal ion binding)|uniprotkb:P56081(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:T6Jo6HqGFq4i+3QFsuhkk/Ske9g85962 rogid:T6Jo6HqGFq4i+3QFsuhkk/Ske9g85962 intact-crc:F99530D9FAEEC3FD|rigid:lxrRX9hyljRZDMgLpg50RJJFq+I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56082 uniprotkb:P56084 intact:EBI-7496539|intact:MINT-159836|ensemblbacteria:AAD08175 intact:EBI-9272998|ensemblbacteria:AAD08173 psi-mi:atpg_helpy(display_long)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short)|uniprotkb:HP_1133(locus name)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym) psi-mi:atpe_helpy(display_long)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:HP_1131(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331279|imex:IM-22256-810 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56082|refseq:NP_207924.1|interpro:IPR035968|ensemblbacteria:AAD08175(transcript)|ensemblbacteria:HP_1133(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:WP_000002194.1|dip:DIP-3116N|uniprotkb:P56082(identity) interpro:IPR036771|refseq:WP_001863093.1|refseq:NP_207922.1|interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|ensemblbacteria:AAD08173(transcript)|ensemblbacteria:HP_1131(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:P56084(identity) psi-mi:"MI:0469"(intact) function:"Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex"|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gR8pc+z5yGmMlO9qI7b+Dv6OLVc85962 rogid:rec9cmE1p+ozEViEiOECsaRZam885962 intact-crc:603940DD425A2BD3|rigid:smulW6U5r8R1ulwsEhwLgPuZEYE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56096 uniprotkb:O25412 intact:EBI-9273020|ensemblbacteria:AAD08600 intact:EBI-9264765|ensemblbacteria:AAD07768 psi-mi:ftsw_helpy(display_long)|uniprotkb:ftsW(gene name)|psi-mi:ftsW(display_short)|uniprotkb:Cell division protein FtsW(gene name synonym)|uniprotkb:Cell wall polymerase(gene name synonym)|uniprotkb:Peptidoglycan polymerase(gene name synonym)|uniprotkb:HP_1560(locus name) psi-mi:o25412_helpy(display_long)|uniprotkb:HP_0708(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331297|imex:IM-22256-811 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000205898.1|interpro:IPR001182(Cell cycle protein)|interpro:IPR018365|refseq:NP_208351.1|ensemblbacteria:AAD08600(transcript)|ensemblbacteria:HP_1560(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0007049"(cell cycle)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008955"(peptidoglycan glycosyltransferase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0015648"(lipid-linked peptidoglycan transporter activity)|go:"GO:0032153"(cell division site)|go:"GO:0051301"(cell division)|go:"GO:0071555"(cell wall organization)|uniprotkb:P56096(identity) refseq:WP_001022706.1|refseq:NP_207502.1|ensemblbacteria:AAD07768(transcript)|ensemblbacteria:HP_0708(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25412(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rn8cNP97qHaSqPKEVH7sQQB66sg85962 rogid:vYnzL3iuenx8l/04k3nMmUppq1U85962 intact-crc:2F107BFEAA841A67|rigid:A76XMT5AMDWkxTdUgQ5FLWY4s1Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25629 uniprotkb:P56097 intact:EBI-7505515|intact:MINT-163208|ensemblbacteria:AAD08024 intact:EBI-7505485|intact:MINT-163183|ensemblbacteria:AAD08025 psi-mi:ftsa_helpy(display_long)|uniprotkb:ftsA(gene name)|psi-mi:ftsA(display_short)|uniprotkb:HP_0978(locus name) psi-mi:ftsz_helpy(display_long)|uniprotkb:ftsZ(gene name)|psi-mi:ftsZ(display_short)|uniprotkb:HP_0979(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331315|imex:IM-22256-812 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25629|refseq:WP_000400290.1|refseq:NP_207769.1|ensemblbacteria:AAD08024(transcript)|ensemblbacteria:HP_0978(gene)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051301"(cell division)|interpro:IPR003494(Cell division protein FtsA)|interpro:IPR020823|interpro:IPR043129|dip:DIP-3124N|uniprotkb:O25629(identity) mint:P56097|refseq:WP_000233600.1|refseq:NP_207770.1|ensemblbacteria:AAD08025(transcript)|ensemblbacteria:HP_0979(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0003924"(GTPase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051258"(protein polymerization)|go:"GO:0051301"(cell division)|interpro:IPR000158(Cell division protein FtsZ, N-terminal)|interpro:IPR003008(Tubulin/FtsZ, GTPase)|interpro:IPR008280(Tubulin/FtsZ, C-terminal)|interpro:IPR018316|interpro:IPR020805|interpro:IPR024757|interpro:IPR036525|interpro:IPR037103|go:"GO:0005525"(GTP binding)|dip:DIP-3610N|uniprotkb:P56097(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein may be involved in anomalous filament growth. May be a component of the septum comment:mint|function:This protein is essential to the cell-division process. It seems to assemble into a dynamic ring on the inner surface of the cytoplasmic membrane at the place where division will occur, and the formation of the ring is the signal for septation to begin. Binds to and hydrolyzes GTP. Involved in the synthesis of the septal peptidoglycan figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jRkQVJaEFRsCXTz0mUmRP13iyes85962 rogid:4G2XeSNIYM1HiCNRLEc9x5DWJcs85962 intact-crc:26161CBF239CA7C0|rigid:xP16FL1tHy9htTMXhWmq123foOc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56097 uniprotkb:P56097 intact:EBI-7505485|intact:MINT-163183|ensemblbacteria:AAD08025 intact:EBI-7505485|intact:MINT-163183|ensemblbacteria:AAD08025 psi-mi:ftsz_helpy(display_long)|uniprotkb:ftsZ(gene name)|psi-mi:ftsZ(display_short)|uniprotkb:HP_0979(locus name) psi-mi:ftsz_helpy(display_long)|uniprotkb:ftsZ(gene name)|psi-mi:ftsZ(display_short)|uniprotkb:HP_0979(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331333|imex:IM-22256-813 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56097|refseq:WP_000233600.1|refseq:NP_207770.1|ensemblbacteria:AAD08025(transcript)|ensemblbacteria:HP_0979(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0003924"(GTPase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051258"(protein polymerization)|go:"GO:0051301"(cell division)|interpro:IPR000158(Cell division protein FtsZ, N-terminal)|interpro:IPR003008(Tubulin/FtsZ, GTPase)|interpro:IPR008280(Tubulin/FtsZ, C-terminal)|interpro:IPR018316|interpro:IPR020805|interpro:IPR024757|interpro:IPR036525|interpro:IPR037103|go:"GO:0005525"(GTP binding)|dip:DIP-3610N|uniprotkb:P56097(identity) mint:P56097|refseq:WP_000233600.1|refseq:NP_207770.1|ensemblbacteria:AAD08025(transcript)|ensemblbacteria:HP_0979(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0003924"(GTPase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051258"(protein polymerization)|go:"GO:0051301"(cell division)|interpro:IPR000158(Cell division protein FtsZ, N-terminal)|interpro:IPR003008(Tubulin/FtsZ, GTPase)|interpro:IPR008280(Tubulin/FtsZ, C-terminal)|interpro:IPR018316|interpro:IPR020805|interpro:IPR024757|interpro:IPR036525|interpro:IPR037103|go:"GO:0005525"(GTP binding)|dip:DIP-3610N|uniprotkb:P56097(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein is essential to the cell-division process. It seems to assemble into a dynamic ring on the inner surface of the cytoplasmic membrane at the place where division will occur, and the formation of the ring is the signal for septation to begin. Binds to and hydrolyzes GTP. Involved in the synthesis of the septal peptidoglycan comment:mint|function:This protein is essential to the cell-division process. It seems to assemble into a dynamic ring on the inner surface of the cytoplasmic membrane at the place where division will occur, and the formation of the ring is the signal for septation to begin. Binds to and hydrolyzes GTP. Involved in the synthesis of the septal peptidoglycan figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4G2XeSNIYM1HiCNRLEc9x5DWJcs85962 rogid:4G2XeSNIYM1HiCNRLEc9x5DWJcs85962 intact-crc:CD75AB2420C9CDFD|rigid:fGPDiIxqJqlSAyr+rjuuLrk9dKU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25613 uniprotkb:P56106 intact:EBI-9273092|ensemblbacteria:AAD08001 intact:EBI-9273085|ensemblbacteria:AAD07823 psi-mi:gtpc1_helpy(display_long)|uniprotkb:GTP cyclohydrolase I(gene name synonym)|uniprotkb:HP_0959(locus name) psi-mi:pyrh_helpy(display_long)|uniprotkb:pyrH(gene name)|psi-mi:pyrH(display_short)|uniprotkb:Uridine monophosphate kinase(gene name synonym)|uniprotkb:HP_0777(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331369|imex:IM-22256-815 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001229797.1|interpro:IPR036069|interpro:IPR002678(NGG1p interacting factor 3, NIF3)|refseq:NP_207751.1|ensemblbacteria:AAD08001(transcript)|ensemblbacteria:HP_0959(gene)|go:"GO:0003934"(GTP cyclohydrolase I activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0035998"(7,8-dihydroneopterin 3'-triphosphate biosynthetic process)|go:"GO:0046872"(metal ion binding)|uniprotkb:O25613(identity) refseq:WP_001148056.1|interpro:IPR036393|interpro:IPR001048(Aspartate/glutamate/uridylate kinase)|interpro:IPR011817(Uridylate kinase)|interpro:IPR015963(Uridylate kinase, bacteria)|rcsb pdb:4A7W|rcsb pdb:4A7X|refseq:NP_207570.1|ensemblbacteria:AAD07823(transcript)|ensemblbacteria:HP_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006225"(UDP biosynthetic process)|go:"GO:0033862"(UMP kinase activity)|go:"GO:0044210"('de novo' CTP biosynthetic process)|uniprotkb:P56106(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gkTtMhRluPCGNb4QSUev2U2XDXc85962 rogid:oPlcbe7roA/GjIOGmPQP4IURb9I85962 intact-crc:225BA7A96C4E6372|rigid:g1nOWl9SdoNHpgDgyRj4k14CAA0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56097 uniprotkb:P64659 intact:EBI-7505485|intact:MINT-163183|ensemblbacteria:AAD08025 intact:EBI-9273069|uniprotkb:O25148|ensemblbacteria:AAD07468 psi-mi:ftsz_helpy(display_long)|uniprotkb:ftsZ(gene name)|psi-mi:ftsZ(display_short)|uniprotkb:HP_0979(locus name) psi-mi:y386_helpy(display_long)|uniprotkb:HP_0386(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331351|imex:IM-22256-814 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56097|refseq:WP_000233600.1|refseq:NP_207770.1|ensemblbacteria:AAD08025(transcript)|ensemblbacteria:HP_0979(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0003924"(GTPase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051258"(protein polymerization)|go:"GO:0051301"(cell division)|interpro:IPR000158(Cell division protein FtsZ, N-terminal)|interpro:IPR003008(Tubulin/FtsZ, GTPase)|interpro:IPR008280(Tubulin/FtsZ, C-terminal)|interpro:IPR018316|interpro:IPR020805|interpro:IPR024757|interpro:IPR036525|interpro:IPR037103|go:"GO:0005525"(GTP binding)|dip:DIP-3610N|uniprotkb:P56097(identity) refseq:WP_000051172.1|refseq:NP_207184.1|ensemblbacteria:AAD07468(transcript)|ensemblbacteria:HP_0386(gene)|uniprotkb:P64659(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein is essential to the cell-division process. It seems to assemble into a dynamic ring on the inner surface of the cytoplasmic membrane at the place where division will occur, and the formation of the ring is the signal for septation to begin. Binds to and hydrolyzes GTP. Involved in the synthesis of the septal peptidoglycan - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4G2XeSNIYM1HiCNRLEc9x5DWJcs85962 rogid:XNuy4rzoi5NBxRg+8q6G040TPsY85962 intact-crc:49B4B611A8C71377|rigid:AVqL78MyMB8mxvTsvL95T5xnFKk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56106 uniprotkb:O25918 intact:EBI-9273085|ensemblbacteria:AAD07823 intact:EBI-9273110|ensemblbacteria:AAD08405 psi-mi:pyrh_helpy(display_long)|uniprotkb:pyrH(gene name)|psi-mi:pyrH(display_short)|uniprotkb:Uridine monophosphate kinase(gene name synonym)|uniprotkb:HP_0777(locus name) psi-mi:crdr_helpy(display_long)|uniprotkb:crdR(gene name)|psi-mi:crdR(display_short)|uniprotkb:HP_1365(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331387|imex:IM-22256-816 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001148056.1|interpro:IPR036393|interpro:IPR001048(Aspartate/glutamate/uridylate kinase)|interpro:IPR011817(Uridylate kinase)|interpro:IPR015963(Uridylate kinase, bacteria)|rcsb pdb:4A7W|rcsb pdb:4A7X|refseq:NP_207570.1|ensemblbacteria:AAD07823(transcript)|ensemblbacteria:HP_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006225"(UDP biosynthetic process)|go:"GO:0033862"(UMP kinase activity)|go:"GO:0044210"('de novo' CTP biosynthetic process)|uniprotkb:P56106(identity) refseq:WP_001169789.1|interpro:IPR036388|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|refseq:NP_208157.1|interpro:IPR039420|ensemblbacteria:AAD08405(transcript)|ensemblbacteria:HP_1365(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|uniprotkb:O25918(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oPlcbe7roA/GjIOGmPQP4IURb9I85962 rogid:VFAEw1MfMyTM/lib1fp4WO/WhzI85962 intact-crc:9085664FB18915AF|rigid:xfZttvtkbz/aYJAUWe0MahHmfTA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56106 uniprotkb:P56106 intact:EBI-9273085|ensemblbacteria:AAD07823 intact:EBI-9273085|ensemblbacteria:AAD07823 psi-mi:pyrh_helpy(display_long)|uniprotkb:pyrH(gene name)|psi-mi:pyrH(display_short)|uniprotkb:Uridine monophosphate kinase(gene name synonym)|uniprotkb:HP_0777(locus name) psi-mi:pyrh_helpy(display_long)|uniprotkb:pyrH(gene name)|psi-mi:pyrH(display_short)|uniprotkb:Uridine monophosphate kinase(gene name synonym)|uniprotkb:HP_0777(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331405|imex:IM-22256-817 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001148056.1|interpro:IPR036393|interpro:IPR001048(Aspartate/glutamate/uridylate kinase)|interpro:IPR011817(Uridylate kinase)|interpro:IPR015963(Uridylate kinase, bacteria)|rcsb pdb:4A7W|rcsb pdb:4A7X|refseq:NP_207570.1|ensemblbacteria:AAD07823(transcript)|ensemblbacteria:HP_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006225"(UDP biosynthetic process)|go:"GO:0033862"(UMP kinase activity)|go:"GO:0044210"('de novo' CTP biosynthetic process)|uniprotkb:P56106(identity) refseq:WP_001148056.1|interpro:IPR036393|interpro:IPR001048(Aspartate/glutamate/uridylate kinase)|interpro:IPR011817(Uridylate kinase)|interpro:IPR015963(Uridylate kinase, bacteria)|rcsb pdb:4A7W|rcsb pdb:4A7X|refseq:NP_207570.1|ensemblbacteria:AAD07823(transcript)|ensemblbacteria:HP_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006225"(UDP biosynthetic process)|go:"GO:0033862"(UMP kinase activity)|go:"GO:0044210"('de novo' CTP biosynthetic process)|uniprotkb:P56106(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oPlcbe7roA/GjIOGmPQP4IURb9I85962 rogid:oPlcbe7roA/GjIOGmPQP4IURb9I85962 intact-crc:B165250A973C3A82|rigid:NpkBqICw1EgAM6jk6y+9sMSbWNU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56415 uniprotkb:P56106 intact:EBI-7699026|ensemblbacteria:AAD07818|intact:MINT-179771 intact:EBI-9273085|ensemblbacteria:AAD07823 psi-mi:moba_helpy(display_long)|uniprotkb:mobA(gene name)|psi-mi:mobA(display_short)|uniprotkb:"GTP:molybdopterin guanylyltransferase"(gene name synonym)|uniprotkb:Mo-MPT guanylyltransferase(gene name synonym)|uniprotkb:HP_0769(locus name)|uniprotkb:Molybdopterin guanylyltransferase(gene name synonym)|uniprotkb:Molybdopterin-guanine dinucleotide synthase(gene name synonym) psi-mi:pyrh_helpy(display_long)|uniprotkb:pyrH(gene name)|psi-mi:pyrH(display_short)|uniprotkb:Uridine monophosphate kinase(gene name synonym)|uniprotkb:HP_0777(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331423|imex:IM-22256-818 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56415|ensemblbacteria:AAD07818(transcript)|ensemblbacteria:HP_0769(gene)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016779"(nucleotidyltransferase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0061603"(molybdenum cofactor guanylyltransferase activity)|go:"GO:1902758"("bis(molybdopterin guanine dinucleotide)molybdenum biosynthetic process")|interpro:IPR013482(Molybdopterin-guanine dinucleotide biosynthesis protein A)|interpro:IPR025877|interpro:IPR029044|refseq:WP_000795288.1|refseq:NP_207562.1|dip:DIP-3751N|uniprotkb:P56415(identity) refseq:WP_001148056.1|interpro:IPR036393|interpro:IPR001048(Aspartate/glutamate/uridylate kinase)|interpro:IPR011817(Uridylate kinase)|interpro:IPR015963(Uridylate kinase, bacteria)|rcsb pdb:4A7W|rcsb pdb:4A7X|refseq:NP_207570.1|ensemblbacteria:AAD07823(transcript)|ensemblbacteria:HP_0777(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006225"(UDP biosynthetic process)|go:"GO:0033862"(UMP kinase activity)|go:"GO:0044210"('de novo' CTP biosynthetic process)|uniprotkb:P56106(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Links a guanosine 5'-phosphate to molydopterin (MPT) forming molybdopterin guanine dinucleotide (MGD)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:pAisNI0pg76hMxy9Frz5H6L25Jk85962 rogid:oPlcbe7roA/GjIOGmPQP4IURb9I85962 intact-crc:EAC1C020CA8F72B2|rigid:YdOs+/Vv9Nzrtpn3amoSSmawUaw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56107 uniprotkb:O25990 intact:EBI-9273158|ensemblbacteria:AAD07444 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:hemh_helpy(display_long)|uniprotkb:hemH(gene name)|psi-mi:hemH(display_short)|uniprotkb:Heme synthase(gene name synonym)|uniprotkb:Protoheme ferro-lyase(gene name synonym)|uniprotkb:HP_0376(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331441|imex:IM-22256-819 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033644|interpro:IPR033659|refseq:WP_000364269.1|interpro:IPR001015(Ferrochelatase)|interpro:IPR019772|refseq:NP_207174.1|ensemblbacteria:AAD07444(transcript)|ensemblbacteria:HP_0376(gene)|go:"GO:0004325"(ferrochelatase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0046872"(metal ion binding)|uniprotkb:P56107(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:WUjF0XMWuPICu8FGBz+IpQqFjbQ85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:EF0701CB22C00D12|rigid:5Kpk/6Ty9hDkkxTytes2rpzz8r0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56107 uniprotkb:O26006 intact:EBI-9273158|ensemblbacteria:AAD07444 intact:EBI-9260077|ensemblbacteria:AAD08511 psi-mi:hemh_helpy(display_long)|uniprotkb:hemH(gene name)|psi-mi:hemH(display_short)|uniprotkb:Heme synthase(gene name synonym)|uniprotkb:Protoheme ferro-lyase(gene name synonym)|uniprotkb:HP_0376(locus name) psi-mi:o26006_helpy(display_long)|uniprotkb:HP_1471(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331459|imex:IM-22256-820 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033644|interpro:IPR033659|refseq:WP_000364269.1|interpro:IPR001015(Ferrochelatase)|interpro:IPR019772|refseq:NP_207174.1|ensemblbacteria:AAD07444(transcript)|ensemblbacteria:HP_0376(gene)|go:"GO:0004325"(ferrochelatase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0046872"(metal ion binding)|uniprotkb:P56107(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_208262.1|ensemblbacteria:AAD08511(transcript)|ensemblbacteria:HP_1471(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O26006(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:WUjF0XMWuPICu8FGBz+IpQqFjbQ85962 rogid:kutCG3yhuSFassWodi2b+4pXCZA85962 intact-crc:42080977DA12803A|rigid:IybCwA2DxA8dlwfkhsSMJ9DFf2I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56115 uniprotkb:O25186 intact:EBI-7509149|intact:MINT-175701|ensemblbacteria:AAD07374 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 psi-mi:gsa_helpy(display_long)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short)|uniprotkb:HP_0306(locus name)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym) psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331477|imex:IM-22256-821 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56115|refseq:NP_207104.1|refseq:WP_000421462.1|ensemblbacteria:AAD07374(transcript)|ensemblbacteria:HP_0306(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006779"(porphyrin-containing compound biosynthetic process)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|dip:DIP-3347N|uniprotkb:P56115(identity) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r0cFTDs8W8Om/6WGEannWSPY+xA85962 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 intact-crc:7560888AC2355A32|rigid:nlVtrJ0cHNCaCStGVhVgqawmm6M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56115 uniprotkb:O25265 intact:EBI-7509149|intact:MINT-175701|ensemblbacteria:AAD07374 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:gsa_helpy(display_long)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short)|uniprotkb:HP_0306(locus name)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331495|imex:IM-22256-822 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56115|refseq:NP_207104.1|refseq:WP_000421462.1|ensemblbacteria:AAD07374(transcript)|ensemblbacteria:HP_0306(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006779"(porphyrin-containing compound biosynthetic process)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|dip:DIP-3347N|uniprotkb:P56115(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r0cFTDs8W8Om/6WGEannWSPY+xA85962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:02F629256F65259F|rigid:Dc6qdL3wp6fN456y3j2U0fal2Nk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56115 uniprotkb:Q9ZKK8 intact:EBI-7509149|intact:MINT-175701|ensemblbacteria:AAD07374 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:gsa_helpy(display_long)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short)|uniprotkb:HP_0306(locus name)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331513|imex:IM-22256-823 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56115|refseq:NP_207104.1|refseq:WP_000421462.1|ensemblbacteria:AAD07374(transcript)|ensemblbacteria:HP_0306(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006779"(porphyrin-containing compound biosynthetic process)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|dip:DIP-3347N|uniprotkb:P56115(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r0cFTDs8W8Om/6WGEannWSPY+xA85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:EFDD543832606ED8|rigid:0BdnNTNLOH2DUKt61LbEqCsXu/o false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56120 uniprotkb:O25245 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9264829|ensemblbacteria:AAD07580 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:o25245_helpy(display_long)|uniprotkb:HP_0504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331531|imex:IM-22256-824 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) ensemblbacteria:AAD07580(transcript)|ensemblbacteria:HP_0504(gene)|uniprotkb:O25245(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:OmW4837MeO5ViFwnKcsHURCKcgA85962 intact-crc:C7F59229C2C73600|rigid:BdAZ5Oxx7jbnHtR596ElxFgkiRE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56120 uniprotkb:O25760 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9273252|ensemblbacteria:AAD08186 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:o25760_helpy(display_long)|uniprotkb:HP_1140(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331549|imex:IM-22256-825 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) refseq:WP_001248203.1|interpro:IPR004143(Biotin/lipoate A/B protein ligase)|interpro:IPR004408(Biotin--acetyl-CoA-carboxylase ligase)|refseq:NP_207931.1|ensemblbacteria:AAD08186(transcript)|ensemblbacteria:HP_1140(gene)|go:"GO:0004077"(biotin-[acetyl-CoA-carboxylase] ligase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0009305"(protein biotinylation)|uniprotkb:O25760(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:XPpwEvpI4oeHNvb6CYfEsFTaWsw85962 intact-crc:03AB64E5DC538A1E|rigid:97e/D6Ooev4r5m7XBQjOwhDW8NU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56120 uniprotkb:P0A0U4 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331567|imex:IM-22256-826 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 intact-crc:736B982AA36A30A3|rigid:VoaXtN07Y1GRrvP30pg/60MpRkE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56122 uniprotkb:O25311 intact:EBI-7500271|intact:MINT-176132|ensemblbacteria:AAD07726 intact:EBI-7502370|intact:MINT-171790|ensemblbacteria:AAD07654 psi-mi:aroc_helpy(display_long)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym) psi-mi:o25311_helpy(display_long)|uniprotkb:HP_0589(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331585|imex:IM-22256-827 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56122|refseq:WP_001094036.1|interpro:IPR020541|refseq:NP_207457.1|interpro:IPR000453(Chorismate synthase)|ensemblbacteria:AAD07726(transcript)|ensemblbacteria:HP_0663(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0010181"(FMN binding)|rcsb pdb:1UM0|rcsb pdb:1UMF|interpro:IPR035904|uniprotkb:P56122(identity) mint:O25311|refseq:WP_001206856.1|refseq:NP_207384.1|ensemblbacteria:AAD07654(transcript)|ensemblbacteria:HP_0589(gene)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|interpro:IPR033412|dip:DIP-3462N|uniprotkb:O25311(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ALKO1omI2Rxmk057Rl7wyKvMlc85962 rogid:ufjsDo/hoVKQAOM5bCZAjmWDOtQ85962 intact-crc:4FFCABA587033219|rigid:i2X4CjeuS4G8WNKT/7xMftpLcfU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25965 uniprotkb:P56122 intact:EBI-7631463|ensemblbacteria:AAD08463|intact:MINT-169065 intact:EBI-7500271|intact:MINT-176132|ensemblbacteria:AAD07726 psi-mi:o25965_helpy(display_long)|uniprotkb:HP_1421(locus name) psi-mi:aroc_helpy(display_long)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331603|imex:IM-22256-828 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08463(transcript)|ensemblbacteria:HP_1421(gene)|interpro:IPR001482(Type II secretion system protein E)|interpro:IPR027417|mint:O25965|refseq:WP_000854872.1|refseq:NP_208212.1|dip:DIP-3731N|uniprotkb:O25965(identity) mint:P56122|refseq:WP_001094036.1|interpro:IPR020541|refseq:NP_207457.1|interpro:IPR000453(Chorismate synthase)|ensemblbacteria:AAD07726(transcript)|ensemblbacteria:HP_0663(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0010181"(FMN binding)|rcsb pdb:1UM0|rcsb pdb:1UMF|interpro:IPR035904|uniprotkb:P56122(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gRZd8B4YMHshw7qZZacp68EYNwU85962 rogid:0ALKO1omI2Rxmk057Rl7wyKvMlc85962 intact-crc:49F66A2A2E065DB0|rigid:r/XIOPINYtZ3TPlxt0y5jh3D1Xc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56123 uniprotkb:O25423 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331621|imex:IM-22256-829 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:A69367E166B2FAD6|rigid:AkIZYS9CwbWA1sWj9W5E+ylP1xI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56123 uniprotkb:O25610 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9263045|ensemblbacteria:AAD07999 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:y956_helpy(display_long)|uniprotkb:RNA pseudouridylate synthase(gene name synonym)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:HP_0956(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331639|imex:IM-22256-830 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) refseq:WP_000409617.1|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:NP_207748.1|ensemblbacteria:AAD07999(transcript)|ensemblbacteria:HP_0956(gene)|go:"GO:0000455"(enzyme-directed rRNA pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|uniprotkb:O25610(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:I9CDLgzCdYoEonESpJtaMgKOzLs85962 intact-crc:2666553A085141B8|rigid:w+amu5xX3UHaQpHW7h7H02X4swk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25646 uniprotkb:P56123 intact:EBI-7570023|intact:MINT-171333|ensemblbacteria:AAD08045 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 psi-mi:o25646_helpy(display_long)|uniprotkb:HP_1000(locus name) psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331657|imex:IM-22256-831 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000587397.1|mint:O25646|refseq:NP_207791.1|ensemblbacteria:AAD08045(transcript)|ensemblbacteria:HP_1000(gene)|interpro:IPR009744(VirC1)|interpro:IPR027417|dip:DIP-3618N|uniprotkb:O25646(identity) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:64wmsMWs+zFpo5ignH0wlMJA7z885962 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 intact-crc:4F4562D18916AA39|rigid:itP1lhaFBvRzKgWG/pNfhYsmumo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56123 uniprotkb:O25664 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331675|imex:IM-22256-832 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:AE95A9CB38BDB088|rigid:2ETQI0HFQe4MkarDH7xfWY7goD8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56123 uniprotkb:O25676 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331693|imex:IM-22256-833 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:B4170815DAAC6E6A|rigid:R0vlgCVtSgY6yoGNEbuFzNfqdZQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56123 uniprotkb:O25756 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331711|imex:IM-22256-834 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:356D8AB4044E7FB4|rigid:3weLQSOo3exiTW+gk9QR8IW8SwM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:P56123 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331729|imex:IM-22256-835 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 intact-crc:8A1421B729835C99|rigid:I0kLXBXM++ss4Reu2cjZEVGx8cs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56123 uniprotkb:Q9ZLB0 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9273417|ensemblbacteria:AAD06254 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:q9zlb0_helpj(display_long)|uniprotkb:jhp_0670(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331747|imex:IM-22256-836 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) interpro:IPR006073(GTP1/OBG)|interpro:IPR027417|ensemblbacteria:AAD06254(transcript)|ensemblbacteria:jhp_0670(gene)|go:"GO:0005525"(GTP binding)|uniprotkb:Q9ZLB0(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:xAcLsS1WaAp06hD0gRlIbeSfPV085963 intact-crc:8016587BD408F97A|rigid:rAJMD5GypBQSvvzoLxggC85zvFs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26065 uniprotkb:P56124 intact:EBI-7666717|ensemblbacteria:AAD08580|intact:MINT-4074429 intact:EBI-7530222|intact:MINT-181432|ensemblbacteria:AAD07305 psi-mi:o26065_helpy(display_long)|uniprotkb:HP_1540(locus name) psi-mi:syp_helpy(display_long)|uniprotkb:proS(gene name)|psi-mi:proS(display_short)|uniprotkb:Prolyl-tRNA synthetase(gene name synonym)|uniprotkb:HP_0238(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331765|imex:IM-22256-837 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR006311(Twin-arginine translocation pathway signal)|ensemblbacteria:AAD08580(transcript)|ensemblbacteria:HP_1540(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016491"(oxidoreductase activity)|go:"GO:0022900"(electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:1902600"(proton transmembrane transport)|mint:O26065|refseq:WP_000763654.1|interpro:IPR014349(Rieske iron-sulphur protein)|interpro:IPR017941|refseq:NP_208331.1|interpro:IPR036922|uniprotkb:O26065(identity) mint:P56124|refseq:WP_000899254.1|refseq:NP_207036.1|ensemblbacteria:AAD07305(transcript)|ensemblbacteria:HP_0238(gene)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004827"(proline-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006433"(prolyl-tRNA aminoacylation)|interpro:IPR002314("Aminoacyl-tRNA synthetase, class II (G, H, P and S)")|interpro:IPR002316(Prolyl-tRNA synthetase, class IIa)|interpro:IPR004154(Anticodon-binding)|interpro:IPR004500(Prolyl-tRNA synthetase, class IIa, bacterial)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR007214(YbaK/aminoacyl-tRNA synthetase associated region)|interpro:IPR023717|interpro:IPR036621|interpro:IPR033730|interpro:IPR036754|interpro:IPR044140|dip:DIP-3265N|uniprotkb:P56124(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process noncognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys-tRNA(Pro) is not edited by ProRS" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Cs0Ms4ihvKf78JKv5PK+c7UWB+085962 rogid:wNj4MIxV+X3IDC4bG4E3MEotzYE85962 intact-crc:32144609E527074F|rigid:VXD8ANQdt3wUNn/x38X0DVYZlaU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56124 uniprotkb:P56124 intact:EBI-7530222|intact:MINT-181432|ensemblbacteria:AAD07305 intact:EBI-7530222|intact:MINT-181432|ensemblbacteria:AAD07305 psi-mi:syp_helpy(display_long)|uniprotkb:proS(gene name)|psi-mi:proS(display_short)|uniprotkb:Prolyl-tRNA synthetase(gene name synonym)|uniprotkb:HP_0238(locus name) psi-mi:syp_helpy(display_long)|uniprotkb:proS(gene name)|psi-mi:proS(display_short)|uniprotkb:Prolyl-tRNA synthetase(gene name synonym)|uniprotkb:HP_0238(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331783|imex:IM-22256-838 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56124|refseq:WP_000899254.1|refseq:NP_207036.1|ensemblbacteria:AAD07305(transcript)|ensemblbacteria:HP_0238(gene)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004827"(proline-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006433"(prolyl-tRNA aminoacylation)|interpro:IPR002314("Aminoacyl-tRNA synthetase, class II (G, H, P and S)")|interpro:IPR002316(Prolyl-tRNA synthetase, class IIa)|interpro:IPR004154(Anticodon-binding)|interpro:IPR004500(Prolyl-tRNA synthetase, class IIa, bacterial)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR007214(YbaK/aminoacyl-tRNA synthetase associated region)|interpro:IPR023717|interpro:IPR036621|interpro:IPR033730|interpro:IPR036754|interpro:IPR044140|dip:DIP-3265N|uniprotkb:P56124(identity) mint:P56124|refseq:WP_000899254.1|refseq:NP_207036.1|ensemblbacteria:AAD07305(transcript)|ensemblbacteria:HP_0238(gene)|go:"GO:0002161"(aminoacyl-tRNA editing activity)|go:"GO:0004827"(proline-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006433"(prolyl-tRNA aminoacylation)|interpro:IPR002314("Aminoacyl-tRNA synthetase, class II (G, H, P and S)")|interpro:IPR002316(Prolyl-tRNA synthetase, class IIa)|interpro:IPR004154(Anticodon-binding)|interpro:IPR004500(Prolyl-tRNA synthetase, class IIa, bacterial)|interpro:IPR006195(Aminoacyl-tRNA synthetase, class II)|interpro:IPR007214(YbaK/aminoacyl-tRNA synthetase associated region)|interpro:IPR023717|interpro:IPR036621|interpro:IPR033730|interpro:IPR036754|interpro:IPR044140|dip:DIP-3265N|uniprotkb:P56124(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process noncognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys-tRNA(Pro) is not edited by ProRS" comment:mint|function:"Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process noncognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys-tRNA(Pro) is not edited by ProRS" figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wNj4MIxV+X3IDC4bG4E3MEotzYE85962 rogid:wNj4MIxV+X3IDC4bG4E3MEotzYE85962 intact-crc:45C79BA2F04CACC6|rigid:/4xSW3IMwetcJkoTEJwLdPxB9+Y false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56125 uniprotkb:P56125 intact:EBI-9273468|ensemblbacteria:AAD07306 intact:EBI-9273468|ensemblbacteria:AAD07306 psi-mi:hem1_helpy(display_long)|uniprotkb:hemA(gene name)|psi-mi:hemA(display_short)|uniprotkb:HP_0239(locus name) psi-mi:hem1_helpy(display_long)|uniprotkb:hemA(gene name)|psi-mi:hemA(display_short)|uniprotkb:HP_0239(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331801|imex:IM-22256-839 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000418286.1|interpro:IPR036291|interpro:IPR036343|interpro:IPR036453|interpro:IPR000343(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase)|interpro:IPR006151(Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase)|interpro:IPR015895(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal)|interpro:IPR015896(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal)|interpro:IPR018214|refseq:NP_207037.1|ensemblbacteria:AAD07306(transcript)|ensemblbacteria:HP_0239(gene)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008883"(glutamyl-tRNA reductase activity)|go:"GO:0050661"(NADP binding)|uniprotkb:P56125(identity) refseq:WP_000418286.1|interpro:IPR036291|interpro:IPR036343|interpro:IPR036453|interpro:IPR000343(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase)|interpro:IPR006151(Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase)|interpro:IPR015895(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal)|interpro:IPR015896(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal)|interpro:IPR018214|refseq:NP_207037.1|ensemblbacteria:AAD07306(transcript)|ensemblbacteria:HP_0239(gene)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008883"(glutamyl-tRNA reductase activity)|go:"GO:0050661"(NADP binding)|uniprotkb:P56125(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:pFw/ruMHcuvVXMl1vCUflJnrKSc85962 rogid:pFw/ruMHcuvVXMl1vCUflJnrKSc85962 intact-crc:392A294425218AC2|rigid:8rqZ+tcCkHoMkm3sin4y9H+MQJE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56128 uniprotkb:O25315 intact:EBI-7608389|intact:MINT-169291|ensemblbacteria:AAD07388 intact:EBI-7561356|intact:MINT-174396|ensemblbacteria:AAD07659 psi-mi:syr_helpy(display_long)|uniprotkb:Arginyl-tRNA synthetase(gene name synonym)|uniprotkb:HP_0319(locus name)|uniprotkb:argS(gene name)|psi-mi:argS(display_short) psi-mi:o25315_helpy(display_long)|uniprotkb:HP_0593(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331819|imex:IM-22256-840 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000557124.1|mint:P56128|refseq:NP_207117.1|ensemblbacteria:AAD07388(transcript)|ensemblbacteria:HP_0319(gene)|go:"GO:0004814"(arginine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006420"(arginyl-tRNA aminoacylation)|interpro:IPR001278(Arginyl-tRNA synthetase, class Ic)|interpro:IPR001412(Aminoacyl-tRNA synthetase, class I, conserved site)|interpro:IPR005148(Arginyl tRNA synthetase, class Ic, N-terminal)|interpro:IPR008909(DALR anticodon binding)|interpro:IPR009080(Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR035684|interpro:IPR036695|dip:DIP-3643N|uniprotkb:P56128(identity) mint:O25315|ensemblbacteria:AAD07659(transcript)|ensemblbacteria:HP_0593(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002295(N6 adenine-specific DNA methyltransferase, D21 class)|interpro:IPR002941(DNA methylase N-4/N-6)|interpro:IPR029063|rcsb pdb:6K0W|dip:DIP-3546N|uniprotkb:O25315(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GZ7Je//TXE4pGd0qM8EoHpr2+mM85962 rogid:45Ikw8/PrvsAyMeSZilSKx+z/eA85962 intact-crc:0D314DCD65A71976|rigid:JKYUFh4acNF883rquoP7ZkVds9Q false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:P56133 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-9273499|ensemblbacteria:AAD07431 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:pimt_helpy(display_long)|uniprotkb:pcm(gene name)|psi-mi:pcm(display_short)|uniprotkb:L-isoaspartyl protein carboxyl methyltransferase(gene name synonym)|uniprotkb:Protein L-isoaspartyl methyltransferase(gene name synonym)|uniprotkb:Protein-beta-aspartate methyltransferase(gene name synonym)|uniprotkb:HP_0363(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331837|imex:IM-22256-841 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) refseq:WP_001084597.1|interpro:IPR000682("Protein-L-isoaspartate(D-aspartate) O-methyltransferase")|refseq:NP_207161.1|interpro:IPR029063|ensemblbacteria:AAD07431(transcript)|ensemblbacteria:HP_0363(gene)|go:"GO:0004719"("protein-L-isoaspartate (D-aspartate) O-methyltransferase activity")|go:"GO:0005737"(cytoplasm)|go:"GO:0030091"(protein repair)|uniprotkb:P56133(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:/fA64bi2sf/jLeJXZYXtShhLoQ485962 intact-crc:62BA5F046609F14A|rigid:uRaeY4EBy5FF04v8PFKlDqQXVME false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56142 uniprotkb:P56141 intact:EBI-7506588|intact:MINT-167530|ensemblbacteria:AAD08323 intact:EBI-9273518|ensemblbacteria:AAD08322 psi-mi:trpb_helpy(display_long)|uniprotkb:HP_1278(locus name)|uniprotkb:trpB(gene name)|psi-mi:trpB(display_short) psi-mi:trpa_helpy(display_long)|uniprotkb:trpA(gene name)|psi-mi:trpA(display_short)|uniprotkb:HP_1277(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331855|imex:IM-22256-842 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56142|refseq:WP_001034280.1|refseq:NP_208070.1|ensemblbacteria:AAD08323(transcript)|ensemblbacteria:HP_1278(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004834"(tryptophan synthase activity)|go:"GO:0005737"(cytoplasm)|interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|interpro:IPR036052|dip:DIP-3612N|uniprotkb:P56142(identity) refseq:WP_001270319.1|interpro:IPR002028(Tryptophan synthase, alpha chain)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR018204|refseq:NP_208069.1|ensemblbacteria:AAD08322(transcript)|ensemblbacteria:HP_1277(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004834"(tryptophan synthase activity)|go:"GO:0005829"(cytosol)|uniprotkb:P56141(identity) psi-mi:"MI:0469"(intact) function:The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:XjekVRiT59NpmXwTNNBlIGo7F0085962 rogid:1xIRkyXsjKx+Bf5MlX0eCZ7Eyjg85962 intact-crc:80430C507B63307D|rigid:WtxqgzjQ+w7VMdJio9fqlg8OqKc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56144 uniprotkb:O06914 intact:EBI-9273537|ensemblbacteria:AAD07429 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:trua_helpy(display_long)|uniprotkb:truA(gene name)|psi-mi:truA(display_short)|uniprotkb:hisT(gene name synonym)|uniprotkb:"tRNA pseudouridine(38-40) synthase"(gene name synonym)|uniprotkb:tRNA pseudouridylate synthase I(gene name synonym)|uniprotkb:tRNA-uridine isomerase I(gene name synonym)|uniprotkb:HP_0361(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331873|imex:IM-22256-843 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001203260.1|interpro:IPR020094|interpro:IPR001406(tRNA pseudouridine synthase)|interpro:IPR020095|interpro:IPR020097|interpro:IPR020103|refseq:NP_207159.1|ensemblbacteria:AAD07429(transcript)|ensemblbacteria:HP_0361(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|go:"GO:0031119"(tRNA pseudouridine synthesis)|go:"GO:0106029"(tRNA pseudouridine synthase activity)|uniprotkb:P56144(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zYY51Tza1ue5sY41BLJ6EV2hiZM85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:0CA4C76DBE8DFE5D|rigid:ZfS0vytnJlKS7GwZ/Q+swSS3/+4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25553 uniprotkb:P56144 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-9273537|ensemblbacteria:AAD07429 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:trua_helpy(display_long)|uniprotkb:truA(gene name)|psi-mi:truA(display_short)|uniprotkb:hisT(gene name synonym)|uniprotkb:"tRNA pseudouridine(38-40) synthase"(gene name synonym)|uniprotkb:tRNA pseudouridylate synthase I(gene name synonym)|uniprotkb:tRNA-uridine isomerase I(gene name synonym)|uniprotkb:HP_0361(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331891|imex:IM-22256-844 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) refseq:WP_001203260.1|interpro:IPR020094|interpro:IPR001406(tRNA pseudouridine synthase)|interpro:IPR020095|interpro:IPR020097|interpro:IPR020103|refseq:NP_207159.1|ensemblbacteria:AAD07429(transcript)|ensemblbacteria:HP_0361(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|go:"GO:0031119"(tRNA pseudouridine synthesis)|go:"GO:0106029"(tRNA pseudouridine synthase activity)|uniprotkb:P56144(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:zYY51Tza1ue5sY41BLJ6EV2hiZM85962 intact-crc:26EB2E3F80D9A7B2|rigid:mIa9mcCYBULMqlaWcsgJ7fqKXAE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56144 uniprotkb:O25828 intact:EBI-9273537|ensemblbacteria:AAD07429 intact:EBI-527984|ensemblbacteria:AAD08280 psi-mi:trua_helpy(display_long)|uniprotkb:truA(gene name)|psi-mi:truA(display_short)|uniprotkb:hisT(gene name synonym)|uniprotkb:"tRNA pseudouridine(38-40) synthase"(gene name synonym)|uniprotkb:tRNA pseudouridylate synthase I(gene name synonym)|uniprotkb:tRNA-uridine isomerase I(gene name synonym)|uniprotkb:HP_0361(locus name) psi-mi:o25828_helpy(display_long)|uniprotkb:HP_1230(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331909|imex:IM-22256-845 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001203260.1|interpro:IPR020094|interpro:IPR001406(tRNA pseudouridine synthase)|interpro:IPR020095|interpro:IPR020097|interpro:IPR020103|refseq:NP_207159.1|ensemblbacteria:AAD07429(transcript)|ensemblbacteria:HP_0361(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|go:"GO:0031119"(tRNA pseudouridine synthesis)|go:"GO:0106029"(tRNA pseudouridine synthase activity)|uniprotkb:P56144(identity) refseq:NP_208022.1|ensemblbacteria:AAD08280(transcript)|ensemblbacteria:HP_1230(gene)|go:"GO:0042802"(identical protein binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR021011|interpro:IPR038381|rcsb pdb:2UVP|rcsb pdb:2WP0|refseq:WP_000788231.1|dip:DIP-3677N|mint:O25828|uniprotkb:O25828(identity) psi-mi:"MI:0469"(intact) - crc64:91FE4AE113B32E15 figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zYY51Tza1ue5sY41BLJ6EV2hiZM85962 rogid:AyCnyZ9ycYx0T6cZKpyBiuPAlsY85962 intact-crc:DD92805EB3603681|rigid:OwwjUJmcPSnXIYSk07SCb5XGGDE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25674 uniprotkb:P56145 intact:EBI-7559878|intact:MINT-4065399|ensemblbacteria:AAD08074 intact:EBI-7640533|ensemblbacteria:AAD07471|intact:MINT-161099 psi-mi:o25674_helpy(display_long)|uniprotkb:HP_1030(locus name) psi-mi:syfb_helpy(display_long)|uniprotkb:Phenylalanyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:pheT(gene name)|psi-mi:pheT(display_short)|uniprotkb:HP_0402(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331927|imex:IM-22256-846 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|mint:O25674|refseq:WP_001150629.1|interpro:IPR036429|refseq:NP_207820.1|interpro:IPR028976|ensemblbacteria:AAD08074(transcript)|ensemblbacteria:HP_1030(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|rcsb pdb:5XRW|uniprotkb:O25674(identity) refseq:WP_000777286.1|ensemblbacteria:AAD07471(transcript)|ensemblbacteria:HP_0402(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004826"(phenylalanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006432"(phenylalanyl-tRNA aminoacylation)|go:"GO:0009328"(phenylalanine-tRNA ligase complex)|interpro:IPR002547(tRNA-binding region)|interpro:IPR004532(Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial)|interpro:IPR005121(Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding)|interpro:IPR005147(tRNA synthetase, B5)|interpro:IPR009061(Putative DNA binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR033714|interpro:IPR036690|interpro:IPR041616|mint:P56145|refseq:NP_207200.1|dip:DIP-3416N|uniprotkb:P56145(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wh43hksoYo8r/6ZiCbBBRMIq0ko85962 rogid:QLQQRuss4md/jYnIyLzxFQ+n1YM85962 intact-crc:4C6C60556F888173|rigid:GDO3meRFZaRckmcwPBm0gb3dgHM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56145 uniprotkb:O25743 intact:EBI-7640533|ensemblbacteria:AAD07471|intact:MINT-161099 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 psi-mi:syfb_helpy(display_long)|uniprotkb:Phenylalanyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:pheT(gene name)|psi-mi:pheT(display_short)|uniprotkb:HP_0402(locus name) psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331945|imex:IM-22256-847 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000777286.1|ensemblbacteria:AAD07471(transcript)|ensemblbacteria:HP_0402(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004826"(phenylalanine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006432"(phenylalanyl-tRNA aminoacylation)|go:"GO:0009328"(phenylalanine-tRNA ligase complex)|interpro:IPR002547(tRNA-binding region)|interpro:IPR004532(Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial)|interpro:IPR005121(Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding)|interpro:IPR005147(tRNA synthetase, B5)|interpro:IPR009061(Putative DNA binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR033714|interpro:IPR036690|interpro:IPR041616|mint:P56145|refseq:NP_207200.1|dip:DIP-3416N|uniprotkb:P56145(identity) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QLQQRuss4md/jYnIyLzxFQ+n1YM85962 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 intact-crc:B12B0FDE9C37BA80|rigid:zNb1rO10uasfgKcimrNeF3y/gq0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:P56154 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-7602661|intact:MINT-174705|ensemblbacteria:AAD08386 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:pgk_helpy(display_long)|uniprotkb:HP_1345(locus name)|uniprotkb:pgk(gene name)|psi-mi:pgk(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331963|imex:IM-22256-848 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) mint:P56154|refseq:WP_000880064.1|refseq:NP_208137.1|ensemblbacteria:AAD08386(transcript)|ensemblbacteria:HP_1345(gene)|go:"GO:0004618"(phosphoglycerate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0043531"(ADP binding)|interpro:IPR001576(Phosphoglycerate kinase)|interpro:IPR015824(Phosphoglycerate kinase, N-terminal)|interpro:IPR015911(Phosphoglycerate kinase, conserved site)|interpro:IPR036043|dip:DIP-3617N|uniprotkb:P56154(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:Zdkfv7kuRu0/jZwuno6cMp/Ackg85962 intact-crc:981621607F564313|rigid:5yPPTM/nu51CMWKFm9w/xfeGrEM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56156 uniprotkb:P56156 intact:EBI-7508353|intact:MINT-179817|ensemblbacteria:AAD07842 intact:EBI-7508353|intact:MINT-179817|ensemblbacteria:AAD07842 psi-mi:clpp_helpy(display_long)|uniprotkb:HP_0794(locus name)|uniprotkb:clpP(gene name)|psi-mi:clpP(display_short)|uniprotkb:Endopeptidase Clp(gene name synonym) psi-mi:clpp_helpy(display_long)|uniprotkb:HP_0794(locus name)|uniprotkb:clpP(gene name)|psi-mi:clpP(display_short)|uniprotkb:Endopeptidase Clp(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331981|imex:IM-22256-849 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56156|refseq:NP_207587.1|refseq:WP_001853304.1|ensemblbacteria:AAD07842(transcript)|ensemblbacteria:HP_0794(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0009368"(endopeptidase Clp complex)|go:"GO:0051117"(ATPase binding)|interpro:IPR001907(Peptidase S14, ClpP)|interpro:IPR018215|interpro:IPR023562|interpro:IPR029045|rcsb pdb:2ZL0|rcsb pdb:2ZL2|rcsb pdb:2ZL3|rcsb pdb:2ZL4|interpro:IPR033135|dip:DIP-3357N|uniprotkb:P56156(identity) mint:P56156|refseq:NP_207587.1|refseq:WP_001853304.1|ensemblbacteria:AAD07842(transcript)|ensemblbacteria:HP_0794(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0009368"(endopeptidase Clp complex)|go:"GO:0051117"(ATPase binding)|interpro:IPR001907(Peptidase S14, ClpP)|interpro:IPR018215|interpro:IPR023562|interpro:IPR029045|rcsb pdb:2ZL0|rcsb pdb:2ZL2|rcsb pdb:2ZL3|rcsb pdb:2ZL4|interpro:IPR033135|dip:DIP-3357N|uniprotkb:P56156(identity) psi-mi:"MI:0469"(intact) function:Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins|comment:mint function:Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MWAbD/ZJzbGj5dQ5Pugar54iaEI85962 rogid:MWAbD/ZJzbGj5dQ5Pugar54iaEI85962 intact-crc:3FC09DB51D6F3F73|rigid:Rv5ysw1TqlsLeCF4ZevT0jcByQU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25378 uniprotkb:P56162 intact:EBI-7672575|ensemblbacteria:AAD07735|intact:MINT-159859 intact:EBI-9273649|ensemblbacteria:AAD08303 psi-mi:o25378_helpy(display_long)|uniprotkb:HP_0667(locus name) psi-mi:pyre_helpy(display_long)|uniprotkb:pyrE(gene name)|psi-mi:pyrE(display_short)|uniprotkb:HP_1257(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9331999|imex:IM-22256-850 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07735(transcript)|ensemblbacteria:HP_0667(gene)|interpro:IPR039442|mint:O25378|dip:DIP-3471N|uniprotkb:O25378(identity) rcsb pdb:4PAW|refseq:WP_000351558.1|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR006273(Orotate phosphoribosyltransferase, Thermus type)|interpro:IPR023031|refseq:NP_208049.1|interpro:IPR029057|ensemblbacteria:AAD08303(transcript)|ensemblbacteria:HP_1257(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004588"(orotate phosphoribosyltransferase activity)|go:"GO:0006222"(UMP biosynthetic process)|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019856"(pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|uniprotkb:P56162(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Rasu23EsBsUF7qWG9M0g8Odk6UM85962 rogid:igTt5G+DWuQGm3iCcZ9riQENe/Q85962 intact-crc:FD6F26B8BD7C9553|rigid:UOTa0jhTep3SjOY2/BL0lH4bjS0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56162 uniprotkb:Q9Z3A7 intact:EBI-9273649|ensemblbacteria:AAD08303 intact:EBI-9264847|ensemblbacteria:AAD06538|ensemblbacteria:AAD06883 psi-mi:pyre_helpy(display_long)|uniprotkb:pyrE(gene name)|psi-mi:pyrE(display_short)|uniprotkb:HP_1257(locus name) psi-mi:q9z3a7_helpj(display_long)|uniprotkb:jhp_0958(locus name)|uniprotkb:jhp_1306(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332017|imex:IM-22256-851 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:4PAW|refseq:WP_000351558.1|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR006273(Orotate phosphoribosyltransferase, Thermus type)|interpro:IPR023031|refseq:NP_208049.1|interpro:IPR029057|ensemblbacteria:AAD08303(transcript)|ensemblbacteria:HP_1257(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004588"(orotate phosphoribosyltransferase activity)|go:"GO:0006222"(UMP biosynthetic process)|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019856"(pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|uniprotkb:P56162(identity) ensemblbacteria:AAD06538(transcript)|ensemblbacteria:AAD06883(transcript)|ensemblbacteria:jhp_0958(gene)|ensemblbacteria:jhp_1306(gene)|uniprotkb:Q9Z3A7(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:igTt5G+DWuQGm3iCcZ9riQENe/Q85962 rogid:UZGi2Zy3UKsAkuRx4SF2j3p2eak85963 intact-crc:AAF7B2E70ADF69B9|rigid:Z+KVQrCKnRzuYQl/+F1qXZDAPYo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZKV6 uniprotkb:P56162 intact:EBI-9269982|ensemblbacteria:AAD06406 intact:EBI-9273649|ensemblbacteria:AAD08303 psi-mi:q9zkv6_helpj(display_long)|uniprotkb:jhp_0829(locus name) psi-mi:pyre_helpy(display_long)|uniprotkb:pyrE(gene name)|psi-mi:pyrE(display_short)|uniprotkb:HP_1257(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332035|imex:IM-22256-852 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06406(transcript)|ensemblbacteria:jhp_0829(gene)|uniprotkb:Q9ZKV6(identity) rcsb pdb:4PAW|refseq:WP_000351558.1|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR006273(Orotate phosphoribosyltransferase, Thermus type)|interpro:IPR023031|refseq:NP_208049.1|interpro:IPR029057|ensemblbacteria:AAD08303(transcript)|ensemblbacteria:HP_1257(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004588"(orotate phosphoribosyltransferase activity)|go:"GO:0006222"(UMP biosynthetic process)|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019856"(pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|uniprotkb:P56162(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:PmSoJZhuDkthv65Gq30HtYlHvTA85963 rogid:igTt5G+DWuQGm3iCcZ9riQENe/Q85962 intact-crc:AEE851082BCF7E9A|rigid:WqMww0y/4ykJsBVmjiNvLGEIE84 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25940 uniprotkb:P56185 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-7495850|intact:MINT-177855|ensemblbacteria:AAD08469 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:rnj_helpy(display_long)|uniprotkb:rnj(gene name)|psi-mi:rnj(display_short)|uniprotkb:HP_1430(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332053|imex:IM-22256-853 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) mint:P56185|refseq:NP_208221.1|ensemblbacteria:AAD08469(transcript)|ensemblbacteria:HP_1430(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0004534"(5'-3' exoribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR001279(Beta-lactamase-like)|interpro:IPR001587(Protein of unknown function UPF0036, conserved site)|interpro:IPR004613(Conserved hypothetical protein MG423)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|interpro:IPR030854|interpro:IPR036866|interpro:IPR041636|interpro:IPR042173|refseq:WP_000131629.1|dip:DIP-3218N|uniprotkb:P56185(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:ZQXiZx/EmgmEqmTVqKPKxd2CwiU85962 intact-crc:8344111A7BD890F6|rigid:ateSXObNQbAp1wplSCRIpUVTzIA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56190 uniprotkb:O25990 intact:EBI-7694966|ensemblbacteria:AAD08212|intact:MINT-159567 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:csta_helpy(display_long)|uniprotkb:Carbon starvation protein A homolog(gene name synonym)|uniprotkb:HP_1168(locus name)|uniprotkb:cstA(gene name)|psi-mi:cstA(display_short) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332071|imex:IM-22256-854 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08212(transcript)|ensemblbacteria:HP_1168(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0009267"(cellular response to starvation)|go:"GO:0015031"(protein transport)|go:"GO:0015833"(peptide transport)|go:"GO:0031669"(cellular response to nutrient levels)|interpro:IPR003706(Carbon starvation protein CstA)|mint:P56190|interpro:IPR025299|refseq:NP_207959.1|refseq:WP_001172668.1|uniprotkb:P56190(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jwfA8m5yt6xTzlIV+NUYqNRouP485962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:ADCDE95417809C90|rigid:xGehf1Cqzck82DhuxGc6zAxTobs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56191 uniprotkb:P56191 intact:EBI-9273728|ensemblbacteria:AAD07784 intact:EBI-9273728|ensemblbacteria:AAD07784 psi-mi:ddl_helpy(display_long)|uniprotkb:ddl(gene name)|psi-mi:ddl(display_short)|uniprotkb:D-Ala-D-Ala ligase(gene name synonym)|uniprotkb:D-alanylalanine synthetase(gene name synonym)|uniprotkb:ddlA(gene name synonym)|uniprotkb:HP_0738(locus name) psi-mi:ddl_helpy(display_long)|uniprotkb:ddl(gene name)|psi-mi:ddl(display_short)|uniprotkb:D-Ala-D-Ala ligase(gene name synonym)|uniprotkb:D-alanylalanine synthetase(gene name synonym)|uniprotkb:ddlA(gene name synonym)|uniprotkb:HP_0738(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332089|imex:IM-22256-855 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000393659.1|interpro:IPR000291(D-alanine--D-alanine ligase/VANA/B/C, conserved site)|interpro:IPR005905(D-alanine--D-alanine ligase)|interpro:IPR011095(D-alanine--D-alanine ligase, C-terminal)|interpro:IPR011127(D-alanine--D-alanine ligase, N-terminal)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|rcsb pdb:2PVP|refseq:NP_207532.1|ensemblbacteria:AAD07784(transcript)|ensemblbacteria:HP_0738(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008716"(D-alanine-D-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0071555"(cell wall organization)|uniprotkb:P56191(identity) refseq:WP_000393659.1|interpro:IPR000291(D-alanine--D-alanine ligase/VANA/B/C, conserved site)|interpro:IPR005905(D-alanine--D-alanine ligase)|interpro:IPR011095(D-alanine--D-alanine ligase, C-terminal)|interpro:IPR011127(D-alanine--D-alanine ligase, N-terminal)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|rcsb pdb:2PVP|refseq:NP_207532.1|ensemblbacteria:AAD07784(transcript)|ensemblbacteria:HP_0738(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008716"(D-alanine-D-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0071555"(cell wall organization)|uniprotkb:P56191(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mQR0kLo9NLjY69+ywoFbXyDLRZM85962 rogid:mQR0kLo9NLjY69+ywoFbXyDLRZM85962 intact-crc:8F5BD136D20DA6E7|rigid:S+enc8WFEFeUrBqfjgwTCuwpwKA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56191 uniprotkb:Q9ZKK8 intact:EBI-9273728|ensemblbacteria:AAD07784 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:ddl_helpy(display_long)|uniprotkb:ddl(gene name)|psi-mi:ddl(display_short)|uniprotkb:D-Ala-D-Ala ligase(gene name synonym)|uniprotkb:D-alanylalanine synthetase(gene name synonym)|uniprotkb:ddlA(gene name synonym)|uniprotkb:HP_0738(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332107|imex:IM-22256-856 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000393659.1|interpro:IPR000291(D-alanine--D-alanine ligase/VANA/B/C, conserved site)|interpro:IPR005905(D-alanine--D-alanine ligase)|interpro:IPR011095(D-alanine--D-alanine ligase, C-terminal)|interpro:IPR011127(D-alanine--D-alanine ligase, N-terminal)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|rcsb pdb:2PVP|refseq:NP_207532.1|ensemblbacteria:AAD07784(transcript)|ensemblbacteria:HP_0738(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008716"(D-alanine-D-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0071555"(cell wall organization)|uniprotkb:P56191(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mQR0kLo9NLjY69+ywoFbXyDLRZM85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:1135691C1FDD4AF5|rigid:zc6PIaIdRy17ABOmRHyDal5tmqs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25629 uniprotkb:P56416 intact:EBI-7505515|intact:MINT-163208|ensemblbacteria:AAD08024 intact:EBI-7640830|ensemblbacteria:AAD07819|intact:MINT-176987 psi-mi:ftsa_helpy(display_long)|uniprotkb:ftsA(gene name)|psi-mi:ftsA(display_short)|uniprotkb:HP_0978(locus name) psi-mi:flhb_helpy(display_long)|uniprotkb:flhB(gene name)|psi-mi:flhB(display_short)|uniprotkb:HP_0770(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332125|imex:IM-22256-857 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25629|refseq:WP_000400290.1|refseq:NP_207769.1|ensemblbacteria:AAD08024(transcript)|ensemblbacteria:HP_0978(gene)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051301"(cell division)|interpro:IPR003494(Cell division protein FtsA)|interpro:IPR020823|interpro:IPR043129|dip:DIP-3124N|uniprotkb:O25629(identity) refseq:WP_000796857.1|ensemblbacteria:AAD07819(transcript)|ensemblbacteria:HP_0770(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR006135(Type III secretion exporter)|interpro:IPR006136(Flagellar biosynthetic protein FlhB)|interpro:IPR029025|mint:P56416|refseq:NP_207563.1|dip:DIP-3472N|uniprotkb:P56416(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein may be involved in anomalous filament growth. May be a component of the septum comment:mint|function:Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jRkQVJaEFRsCXTz0mUmRP13iyes85962 rogid:+7p0CVTd6eiNfCWW74r2uxPm1JY85962 intact-crc:A028AE0B2B6FA9BD|rigid:KrkSQpyWDMHCnaW+1n64r14wTHQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25678 uniprotkb:P56416 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-7640830|ensemblbacteria:AAD07819|intact:MINT-176987 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:flhb_helpy(display_long)|uniprotkb:flhB(gene name)|psi-mi:flhB(display_short)|uniprotkb:HP_0770(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332143|imex:IM-22256-858 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_000796857.1|ensemblbacteria:AAD07819(transcript)|ensemblbacteria:HP_0770(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR006135(Type III secretion exporter)|interpro:IPR006136(Flagellar biosynthetic protein FlhB)|interpro:IPR029025|mint:P56416|refseq:NP_207563.1|dip:DIP-3472N|uniprotkb:P56416(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:+7p0CVTd6eiNfCWW74r2uxPm1JY85962 intact-crc:73F8528949E32BDF|rigid:fjrKBki+eefEucdOaGQTWjdTNsk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56416 uniprotkb:O25743 intact:EBI-7640830|ensemblbacteria:AAD07819|intact:MINT-176987 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 psi-mi:flhb_helpy(display_long)|uniprotkb:flhB(gene name)|psi-mi:flhB(display_short)|uniprotkb:HP_0770(locus name) psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332161|imex:IM-22256-859 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000796857.1|ensemblbacteria:AAD07819(transcript)|ensemblbacteria:HP_0770(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR006135(Type III secretion exporter)|interpro:IPR006136(Flagellar biosynthetic protein FlhB)|interpro:IPR029025|mint:P56416|refseq:NP_207563.1|dip:DIP-3472N|uniprotkb:P56416(identity) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+7p0CVTd6eiNfCWW74r2uxPm1JY85962 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 intact-crc:9716FC4C514D5EC7|rigid:DbpQuwEu2kh75v5ioNh6HOZc/gs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56416 uniprotkb:O26006 intact:EBI-7640830|ensemblbacteria:AAD07819|intact:MINT-176987 intact:EBI-9260077|ensemblbacteria:AAD08511 psi-mi:flhb_helpy(display_long)|uniprotkb:flhB(gene name)|psi-mi:flhB(display_short)|uniprotkb:HP_0770(locus name) psi-mi:o26006_helpy(display_long)|uniprotkb:HP_1471(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332179|imex:IM-22256-860 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000796857.1|ensemblbacteria:AAD07819(transcript)|ensemblbacteria:HP_0770(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR006135(Type III secretion exporter)|interpro:IPR006136(Flagellar biosynthetic protein FlhB)|interpro:IPR029025|mint:P56416|refseq:NP_207563.1|dip:DIP-3472N|uniprotkb:P56416(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_208262.1|ensemblbacteria:AAD08511(transcript)|ensemblbacteria:HP_1471(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O26006(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+7p0CVTd6eiNfCWW74r2uxPm1JY85962 rogid:kutCG3yhuSFassWodi2b+4pXCZA85962 intact-crc:6E94681605F51543|rigid:rcIM+ph4KmJ7DdclTr1qj+CUrfM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56416 uniprotkb:O26080 intact:EBI-7640830|ensemblbacteria:AAD07819|intact:MINT-176987 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:flhb_helpy(display_long)|uniprotkb:flhB(gene name)|psi-mi:flhB(display_short)|uniprotkb:HP_0770(locus name) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332197|imex:IM-22256-861 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000796857.1|ensemblbacteria:AAD07819(transcript)|ensemblbacteria:HP_0770(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR006135(Type III secretion exporter)|interpro:IPR006136(Flagellar biosynthetic protein FlhB)|interpro:IPR029025|mint:P56416|refseq:NP_207563.1|dip:DIP-3472N|uniprotkb:P56416(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+7p0CVTd6eiNfCWW74r2uxPm1JY85962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:4C3202AF04CFAC42|rigid:G2OElQyYgNN/6dUDE7d5LrwBqrU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O26081 uniprotkb:P56416 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-7640830|ensemblbacteria:AAD07819|intact:MINT-176987 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:flhb_helpy(display_long)|uniprotkb:flhB(gene name)|psi-mi:flhB(display_short)|uniprotkb:HP_0770(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332215|imex:IM-22256-862 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) refseq:WP_000796857.1|ensemblbacteria:AAD07819(transcript)|ensemblbacteria:HP_0770(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR006135(Type III secretion exporter)|interpro:IPR006136(Flagellar biosynthetic protein FlhB)|interpro:IPR029025|mint:P56416|refseq:NP_207563.1|dip:DIP-3472N|uniprotkb:P56416(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:+7p0CVTd6eiNfCWW74r2uxPm1JY85962 intact-crc:22169161928C62D4|rigid:fUhBVQa1YnVo0CFUkhp5pObPjqE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56419 uniprotkb:O25218 intact:EBI-7528520|intact:MINT-165640|ensemblbacteria:AAD07841 intact:EBI-9273852|ensemblbacteria:AAD07540 psi-mi:def_helpy(display_long)|uniprotkb:def(gene name)|psi-mi:def(display_short)|uniprotkb:HP_0793(locus name)|uniprotkb:Polypeptide deformylase(gene name synonym) psi-mi:o25218_helpy(display_long)|uniprotkb:HP_0472(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332233|imex:IM-22256-863 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56419|refseq:WP_001185845.1|refseq:NP_207586.1|ensemblbacteria:AAD07841(transcript)|ensemblbacteria:HP_0793(gene)|go:"GO:0006412"(translation)|go:"GO:0018206"(peptidyl-methionine modification)|go:"GO:0031365"(N-terminal protein amino acid modification)|go:"GO:0042586"(peptide deformylase activity)|go:"GO:0043686"(co-translational protein modification)|go:"GO:0046872"(metal ion binding)|interpro:IPR023635|interpro:IPR036821|dip:DIP-3266N|uniprotkb:P56419(identity) refseq:WP_000595790.1|interpro:IPR002718(Outer membrane protein, Helicobacter)|refseq:NP_207270.1|ensemblbacteria:AAD07540(transcript)|ensemblbacteria:HP_0472(gene)|uniprotkb:O25218(identity) psi-mi:"MI:0469"(intact) function:Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bQFAT9bE3cAPNIJYZ4feEiRjAhY85962 rogid:YaYcUGzNfqNIYsh9I3JuwXlYGJQ85962 intact-crc:6A8B1361E73D36CB|rigid:ad3twnlmgmlIuTyxDsr/Q90GBh0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56419 uniprotkb:O25354 intact:EBI-7528520|intact:MINT-165640|ensemblbacteria:AAD07841 intact:EBI-9273870|ensemblbacteria:AAD07714 psi-mi:def_helpy(display_long)|uniprotkb:def(gene name)|psi-mi:def(display_short)|uniprotkb:HP_0793(locus name)|uniprotkb:Polypeptide deformylase(gene name synonym) psi-mi:o25354_helpy(display_long)|uniprotkb:HP_0637(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332251|imex:IM-22256-864 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56419|refseq:WP_001185845.1|refseq:NP_207586.1|ensemblbacteria:AAD07841(transcript)|ensemblbacteria:HP_0793(gene)|go:"GO:0006412"(translation)|go:"GO:0018206"(peptidyl-methionine modification)|go:"GO:0031365"(N-terminal protein amino acid modification)|go:"GO:0042586"(peptide deformylase activity)|go:"GO:0043686"(co-translational protein modification)|go:"GO:0046872"(metal ion binding)|interpro:IPR023635|interpro:IPR036821|dip:DIP-3266N|uniprotkb:P56419(identity) refseq:WP_000554116.1|refseq:NP_207431.1|ensemblbacteria:AAD07714(transcript)|ensemblbacteria:HP_0637(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25354(identity) psi-mi:"MI:0469"(intact) function:Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bQFAT9bE3cAPNIJYZ4feEiRjAhY85962 rogid:TAx+kV3CF1OXoKTyT8tRxVTnB8I85962 intact-crc:B4FC850675BBE159|rigid:0Q2YlqkMLWglupw5e9dYQvxhXNE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P0A0U4 uniprotkb:P56421 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9273885|ensemblbacteria:AAD07849 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:mog_helpy(display_long)|uniprotkb:mog(gene name)|psi-mi:mog(display_short)|uniprotkb:mogA(gene name synonym)|uniprotkb:HP_0799(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332269|imex:IM-22256-865 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_001193328.1|interpro:IPR036425|interpro:IPR001453(Molybdopterin binding)|interpro:IPR008284(Molybdenum cofactor biosynthesis, conserved site)|refseq:NP_207592.1|ensemblbacteria:AAD07849(transcript)|ensemblbacteria:HP_0799(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0061598"(molybdopterin adenylyltransferase activity)|uniprotkb:P56421(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:IfTh/mu2FZ/fHL1ZuG6KPIfG5no85962 intact-crc:113DE80092D840A8|rigid:b1RB8kUwlQGi31aSm8+dEkiLqtw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56421 uniprotkb:P56421 intact:EBI-9273885|ensemblbacteria:AAD07849 intact:EBI-9273885|ensemblbacteria:AAD07849 psi-mi:mog_helpy(display_long)|uniprotkb:mog(gene name)|psi-mi:mog(display_short)|uniprotkb:mogA(gene name synonym)|uniprotkb:HP_0799(locus name) psi-mi:mog_helpy(display_long)|uniprotkb:mog(gene name)|psi-mi:mog(display_short)|uniprotkb:mogA(gene name synonym)|uniprotkb:HP_0799(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332287|imex:IM-22256-866 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001193328.1|interpro:IPR036425|interpro:IPR001453(Molybdopterin binding)|interpro:IPR008284(Molybdenum cofactor biosynthesis, conserved site)|refseq:NP_207592.1|ensemblbacteria:AAD07849(transcript)|ensemblbacteria:HP_0799(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0061598"(molybdopterin adenylyltransferase activity)|uniprotkb:P56421(identity) refseq:WP_001193328.1|interpro:IPR036425|interpro:IPR001453(Molybdopterin binding)|interpro:IPR008284(Molybdenum cofactor biosynthesis, conserved site)|refseq:NP_207592.1|ensemblbacteria:AAD07849(transcript)|ensemblbacteria:HP_0799(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0061598"(molybdopterin adenylyltransferase activity)|uniprotkb:P56421(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:IfTh/mu2FZ/fHL1ZuG6KPIfG5no85962 rogid:IfTh/mu2FZ/fHL1ZuG6KPIfG5no85962 intact-crc:928FDD149DF7B5F9|rigid:Ndfxkgu9HR93O3knc6n0I11SejY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56421 uniprotkb:Q9ZKK8 intact:EBI-9273885|ensemblbacteria:AAD07849 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:mog_helpy(display_long)|uniprotkb:mog(gene name)|psi-mi:mog(display_short)|uniprotkb:mogA(gene name synonym)|uniprotkb:HP_0799(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332305|imex:IM-22256-867 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001193328.1|interpro:IPR036425|interpro:IPR001453(Molybdopterin binding)|interpro:IPR008284(Molybdenum cofactor biosynthesis, conserved site)|refseq:NP_207592.1|ensemblbacteria:AAD07849(transcript)|ensemblbacteria:HP_0799(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0061598"(molybdopterin adenylyltransferase activity)|uniprotkb:P56421(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:IfTh/mu2FZ/fHL1ZuG6KPIfG5no85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:8369177974215F9E|rigid:/BpNtFw8yMUi2QUkofvKURkz7VY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56422 uniprotkb:O25693 intact:EBI-7674385|ensemblbacteria:AAD07850|intact:MINT-169161 intact:EBI-9261373|ensemblbacteria:AAD08105 psi-mi:moae_helpy(display_long)|uniprotkb:moaE(gene name)|psi-mi:moaE(display_short)|uniprotkb:HP_0800(locus name)|uniprotkb:Molybdenum cofactor biosynthesis protein E(gene name synonym)|uniprotkb:Molybdopterin-converting factor large subunit(gene name synonym)|uniprotkb:Molybdopterin-converting factor subunit 2(gene name synonym)|uniprotkb:MPT synthase subunit 2(gene name synonym) psi-mi:minc_helpy(display_long)|uniprotkb:minC(gene name)|psi-mi:minC(display_short)|uniprotkb:HP_1053(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332323|imex:IM-22256-868 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07850(transcript)|ensemblbacteria:HP_0800(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0030366"(molybdopterin synthase activity)|interpro:IPR003448(Molybdopterin biosynthesis MoaE)|interpro:IPR036563|rcsb pdb:3RPF|mint:P56422|refseq:NP_207593.1|refseq:WP_000912676.1|dip:DIP-3522N|uniprotkb:P56422(identity) refseq:WP_000921052.1|refseq:NP_207844.1|interpro:IPR005526(Septum formation inhibitor MinC, C-terminal)|interpro:IPR013033(Septum formation inhibitor MinC)|interpro:IPR016098(Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal)|interpro:IPR036145|ensemblbacteria:AAD08105(transcript)|ensemblbacteria:HP_1053(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0000917"(division septum assembly)|go:"GO:1901891"(regulation of cell septum assembly)|uniprotkb:O25693(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mODLSKLl57eA0erPm1aXRjwb4rQ85962 rogid:bj1yqCAycq4MJipngXWZ34uLzxY85962 intact-crc:0029035DF7957C7D|rigid:XkJ0LVhyy83/tNqt03ZetRU09lg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56422 uniprotkb:O25721 intact:EBI-7674385|ensemblbacteria:AAD07850|intact:MINT-169161 intact:EBI-9262771|ensemblbacteria:AAD08136 psi-mi:moae_helpy(display_long)|uniprotkb:moaE(gene name)|psi-mi:moaE(display_short)|uniprotkb:HP_0800(locus name)|uniprotkb:Molybdenum cofactor biosynthesis protein E(gene name synonym)|uniprotkb:Molybdopterin-converting factor large subunit(gene name synonym)|uniprotkb:Molybdopterin-converting factor subunit 2(gene name synonym)|uniprotkb:MPT synthase subunit 2(gene name synonym) psi-mi:o25721_helpy(display_long)|uniprotkb:HP_1089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332341|imex:IM-22256-869 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07850(transcript)|ensemblbacteria:HP_0800(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0030366"(molybdopterin synthase activity)|interpro:IPR003448(Molybdopterin biosynthesis MoaE)|interpro:IPR036563|rcsb pdb:3RPF|mint:P56422|refseq:NP_207593.1|refseq:WP_000912676.1|dip:DIP-3522N|uniprotkb:P56422(identity) refseq:WP_001047444.1|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR027417|refseq:NP_207880.1|interpro:IPR038726|ensemblbacteria:AAD08136(transcript)|ensemblbacteria:HP_1089(gene)|uniprotkb:O25721(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mODLSKLl57eA0erPm1aXRjwb4rQ85962 rogid:cj4UolBD2x+jJMZNF8agkRv6zTQ85962 intact-crc:6DA0123CBFD4AD35|rigid:NL1HphYyAZLbr4xQOxLf5DO/Lt0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56422 uniprotkb:P56422 intact:EBI-7674385|ensemblbacteria:AAD07850|intact:MINT-169161 intact:EBI-7674385|ensemblbacteria:AAD07850|intact:MINT-169161 psi-mi:moae_helpy(display_long)|uniprotkb:moaE(gene name)|psi-mi:moaE(display_short)|uniprotkb:HP_0800(locus name)|uniprotkb:Molybdenum cofactor biosynthesis protein E(gene name synonym)|uniprotkb:Molybdopterin-converting factor large subunit(gene name synonym)|uniprotkb:Molybdopterin-converting factor subunit 2(gene name synonym)|uniprotkb:MPT synthase subunit 2(gene name synonym) psi-mi:moae_helpy(display_long)|uniprotkb:moaE(gene name)|psi-mi:moaE(display_short)|uniprotkb:HP_0800(locus name)|uniprotkb:Molybdenum cofactor biosynthesis protein E(gene name synonym)|uniprotkb:Molybdopterin-converting factor large subunit(gene name synonym)|uniprotkb:Molybdopterin-converting factor subunit 2(gene name synonym)|uniprotkb:MPT synthase subunit 2(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332359|imex:IM-22256-870 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07850(transcript)|ensemblbacteria:HP_0800(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0030366"(molybdopterin synthase activity)|interpro:IPR003448(Molybdopterin biosynthesis MoaE)|interpro:IPR036563|rcsb pdb:3RPF|mint:P56422|refseq:NP_207593.1|refseq:WP_000912676.1|dip:DIP-3522N|uniprotkb:P56422(identity) ensemblbacteria:AAD07850(transcript)|ensemblbacteria:HP_0800(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0030366"(molybdopterin synthase activity)|interpro:IPR003448(Molybdopterin biosynthesis MoaE)|interpro:IPR036563|rcsb pdb:3RPF|mint:P56422|refseq:NP_207593.1|refseq:WP_000912676.1|dip:DIP-3522N|uniprotkb:P56422(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group comment:mint|function:Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mODLSKLl57eA0erPm1aXRjwb4rQ85962 rogid:mODLSKLl57eA0erPm1aXRjwb4rQ85962 intact-crc:39A6C575D91C70CF|rigid:FdxeYtEE8eV5oIfuy40EtflNxbw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56428 uniprotkb:P56428 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332395|imex:IM-22256-872 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) psi-mi:"MI:0469"(intact) comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 intact-crc:A35244324364EE79|rigid:9wvX+/IHZ2YpS2mzyPMCD0xGDQ8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56428 uniprotkb:O25433 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 intact:EBI-9264883|ensemblbacteria:AAD07792 psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:o25433_helpy(display_long)|uniprotkb:HP_0733(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332377|imex:IM-22256-871 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) interpro:IPR006073(GTP1/OBG)|interpro:IPR027417|ensemblbacteria:AAD07792(transcript)|ensemblbacteria:HP_0733(gene)|go:"GO:0005525"(GTP binding)|uniprotkb:O25433(identity) psi-mi:"MI:0469"(intact) comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 rogid:EKYSLatRORkONuw5Ozlcom9jL0M85962 intact-crc:5583F9269D77BE3B|rigid:0gkv/Su3sV1zJ4StbIdO5LpufT4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25107 uniprotkb:P56431 intact:EBI-7553265|intact:MINT-159417|ensemblbacteria:AAD07412 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 psi-mi:o25107_helpy(display_long)|uniprotkb:HP_0340(locus name) psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332413|imex:IM-22256-873 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862993.1|mint:O25107|refseq:NP_207138.1|ensemblbacteria:AAD07412(transcript)|ensemblbacteria:HP_0340(gene)|dip:DIP-3383N|uniprotkb:O25107(identity) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:l306qPaaVQ2ZZA8klkmT8i0osH485962 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 intact-crc:39346FB0CFAD8BAB|rigid:bFDP2WErHusuXvzqXQBfZAyWnY8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56431 uniprotkb:O25193 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 intact:EBI-9268368|ensemblbacteria:AAD07521 psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:o25193_helpy(display_long)|uniprotkb:HP_0445(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332431|imex:IM-22256-874 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) ensemblbacteria:AAD07521(transcript)|ensemblbacteria:HP_0445(gene)|uniprotkb:O25193(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 rogid:MA06LY47GdRMwnyLuB4R6iCKeyA85962 intact-crc:0110A4D72C86EC48|rigid:yHtMSO0mHROe6hak8rPk/cvzokY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56431 uniprotkb:O25378 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 intact:EBI-7672575|ensemblbacteria:AAD07735|intact:MINT-159859 psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:o25378_helpy(display_long)|uniprotkb:HP_0667(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332449|imex:IM-22256-875 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) ensemblbacteria:AAD07735(transcript)|ensemblbacteria:HP_0667(gene)|interpro:IPR039442|mint:O25378|dip:DIP-3471N|uniprotkb:O25378(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 rogid:Rasu23EsBsUF7qWG9M0g8Odk6UM85962 intact-crc:DB50052A70067114|rigid:FgJLqI9KUFO8FdN03SqRoNmzdPw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56431 uniprotkb:O25488 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332467|imex:IM-22256-876 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:FBF97E0CA63E47C2|rigid:Tpx9fT9Aj9OcatrlWmqb/VAliow false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56431 uniprotkb:P94845 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332485|imex:IM-22256-877 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 intact-crc:A620E205F65B342B|rigid:cnq+UT2nJ+9Hyjngx8l7s8uSuK4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56431 uniprotkb:Q9ZN16 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332503|imex:IM-22256-878 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:0ED6236453B74A29|rigid:oPSiT9kSH3W+d0U72S/kRZPZ+XA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24873 uniprotkb:P56453 intact:EBI-7493488|intact:MINT-163255|ensemblbacteria:AAD07107 intact:EBI-9274102|ensemblbacteria:AAD08002 psi-mi:o24873_helpy(display_long)|uniprotkb:HP_0030(locus name) psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332521|imex:IM-22256-879 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24873|refseq:NP_206832.1|refseq:WP_000926158.1|ensemblbacteria:AAD07107(transcript)|ensemblbacteria:HP_0030(gene)|dip:DIP-3499N|uniprotkb:O24873(identity) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/WA2RxKnmOtAZF3txrMosHKaCn085962 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 intact-crc:B34BDAFF4A8E2B8A|rigid:DZNvsGrq8WMbv+771rkrU8SoWsk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56453 uniprotkb:O25536 intact:EBI-9274102|ensemblbacteria:AAD08002 intact:EBI-9274118|ensemblbacteria:AAD07907 psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:dut_helpy(display_long)|uniprotkb:dut(gene name)|psi-mi:dut(display_short)|uniprotkb:dUTP pyrophosphatase(gene name synonym)|uniprotkb:HP_0865(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332539|imex:IM-22256-880 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) interpro:IPR033704|refseq:WP_000694145.1|interpro:IPR036157|interpro:IPR008181(DeoxyUTP pyrophosphatase subfamily 1)|refseq:NP_207659.1|interpro:IPR029054|ensemblbacteria:AAD07907(transcript)|ensemblbacteria:HP_0865(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004170"(dUTP diphosphatase activity)|go:"GO:0006226"(dUMP biosynthetic process)|go:"GO:0046081"(dUTP catabolic process)|uniprotkb:O25536(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 rogid:N1PJEHGo7kUEoK5H+5xaqfYNrQU85962 intact-crc:21E243F117BFE78F|rigid:Rygdaf49tevLbYnIcbH/GG67TlM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25852 uniprotkb:P56453 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-9274102|ensemblbacteria:AAD08002 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332557|imex:IM-22256-881 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 intact-crc:8E9FE37867A2AC17|rigid:DbyQCIiZOJPVAUG00k24L7wzT9Q false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56132 uniprotkb:P56453 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-9274102|ensemblbacteria:AAD08002 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332575|imex:IM-22256-882 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 intact-crc:9EDF5AA977A33DD7|rigid:GnyG3wXWBViTmYIsQETCHcjUaJE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56453 uniprotkb:P56453 intact:EBI-9274102|ensemblbacteria:AAD08002 intact:EBI-9274102|ensemblbacteria:AAD08002 psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332593|imex:IM-22256-883 author score:A and B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:"This interaction was detected using both 2-micron high-copy (confidence group B) and CEN low-copy (confidence group A) ori plasmid systems."|author-confidence:A and B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 intact-crc:0E4D7FBA36011D19|rigid:29ninoXiAB6Dl+fC3DyuTU1DtV8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56453 uniprotkb:P56454 intact:EBI-9274102|ensemblbacteria:AAD08002 intact:EBI-9274185|ensemblbacteria:AAD08014 psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:sygb_helpy(display_long)|uniprotkb:glyS(gene name)|psi-mi:glyS(display_short)|uniprotkb:Glycyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:HP_0972(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332611|imex:IM-22256-884 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) refseq:WP_000555186.1|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|interpro:IPR015944(Glycyl-tRNA synthetase, class IIc, beta subunit)|refseq:NP_207763.1|ensemblbacteria:AAD08014(transcript)|ensemblbacteria:HP_0972(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56454(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 rogid:G+lxNFDnNWsKymYLRx0Cbcu86H485962 intact-crc:EFA527711603E4F9|rigid:SbnJJnbnQX2vbFFLNvTxX2oZ254 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZN15 uniprotkb:P56453 intact:EBI-9274204|ensemblbacteria:AAD05627 intact:EBI-9274102|ensemblbacteria:AAD08002 psi-mi:q9zn15_helpj(display_long)|uniprotkb:jhp_0045(locus name) psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332629|imex:IM-22256-885 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001180464.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002295(N6 adenine-specific DNA methyltransferase, D21 class)|interpro:IPR002941(DNA methylase N-4/N-6)|interpro:IPR029063|ensemblbacteria:AAD05627(transcript)|ensemblbacteria:jhp_0045(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|uniprotkb:Q9ZN15(identity) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:FeIoMPafAbEUTu5AI6fT6Is93mA85963 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 intact-crc:8D7F7D43266AC92E|rigid:ASRBe/BoETVDhXCec5LmbLogN5s false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56419 uniprotkb:P56454 intact:EBI-7528520|intact:MINT-165640|ensemblbacteria:AAD07841 intact:EBI-9274185|ensemblbacteria:AAD08014 psi-mi:def_helpy(display_long)|uniprotkb:def(gene name)|psi-mi:def(display_short)|uniprotkb:HP_0793(locus name)|uniprotkb:Polypeptide deformylase(gene name synonym) psi-mi:sygb_helpy(display_long)|uniprotkb:glyS(gene name)|psi-mi:glyS(display_short)|uniprotkb:Glycyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:HP_0972(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332647|imex:IM-22256-886 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56419|refseq:WP_001185845.1|refseq:NP_207586.1|ensemblbacteria:AAD07841(transcript)|ensemblbacteria:HP_0793(gene)|go:"GO:0006412"(translation)|go:"GO:0018206"(peptidyl-methionine modification)|go:"GO:0031365"(N-terminal protein amino acid modification)|go:"GO:0042586"(peptide deformylase activity)|go:"GO:0043686"(co-translational protein modification)|go:"GO:0046872"(metal ion binding)|interpro:IPR023635|interpro:IPR036821|dip:DIP-3266N|uniprotkb:P56419(identity) refseq:WP_000555186.1|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|interpro:IPR015944(Glycyl-tRNA synthetase, class IIc, beta subunit)|refseq:NP_207763.1|ensemblbacteria:AAD08014(transcript)|ensemblbacteria:HP_0972(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56454(identity) psi-mi:"MI:0469"(intact) function:Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bQFAT9bE3cAPNIJYZ4feEiRjAhY85962 rogid:G+lxNFDnNWsKymYLRx0Cbcu86H485962 intact-crc:3520C93D071B0D6D|rigid:qz1i3ZyJTjkUKx/SjmoGevpaCgk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56454 uniprotkb:P56453 intact:EBI-9274185|ensemblbacteria:AAD08014 intact:EBI-9274102|ensemblbacteria:AAD08002 psi-mi:sygb_helpy(display_long)|uniprotkb:glyS(gene name)|psi-mi:glyS(display_short)|uniprotkb:Glycyl-tRNA synthetase beta subunit(gene name synonym)|uniprotkb:HP_0972(locus name) psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332665|imex:IM-22256-887 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000555186.1|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|interpro:IPR015944(Glycyl-tRNA synthetase, class IIc, beta subunit)|refseq:NP_207763.1|ensemblbacteria:AAD08014(transcript)|ensemblbacteria:HP_0972(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56454(identity) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:G+lxNFDnNWsKymYLRx0Cbcu86H485962 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 intact-crc:F990B0979C24CDC4|rigid:SbnJJnbnQX2vbFFLNvTxX2oZ254 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56462 uniprotkb:P56120 intact:EBI-7505292|intact:MINT-164654|ensemblbacteria:AAD07973 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 psi-mi:gch1_helpy(display_long)|uniprotkb:folE(gene name)|psi-mi:folE(display_short)|uniprotkb:HP_0928(locus name)|uniprotkb:GTP cyclohydrolase I(gene name synonym) psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332683|imex:IM-22256-888 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56462|refseq:WP_000427004.1|refseq:NP_207720.1|go:"GO:0008270"(zinc ion binding)|go:"GO:0035998"(7,8-dihydroneopterin 3'-triphosphate biosynthetic process)|go:"GO:0046654"(tetrahydrofolate biosynthetic process)|interpro:IPR001474(GTP cyclohydrolase I)|interpro:IPR018234|interpro:IPR020602|interpro:IPR043133|interpro:IPR043134|ensemblbacteria:AAD07973(transcript)|ensemblbacteria:HP_0928(gene)|go:"GO:0003934"(GTP cyclohydrolase I activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006729"(tetrahydrobiopterin biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|dip:DIP-3586N|uniprotkb:P56462(identity) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JNWwOUF1bUepzK0YVn3ctvDZiY885962 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 intact-crc:CFC72345F2A9BED8|rigid:mfM4ZSFRgBEaR7wWur3NxVAPnig false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56462 uniprotkb:P56462 intact:EBI-7505292|intact:MINT-164654|ensemblbacteria:AAD07973 intact:EBI-7505292|intact:MINT-164654|ensemblbacteria:AAD07973 psi-mi:gch1_helpy(display_long)|uniprotkb:folE(gene name)|psi-mi:folE(display_short)|uniprotkb:HP_0928(locus name)|uniprotkb:GTP cyclohydrolase I(gene name synonym) psi-mi:gch1_helpy(display_long)|uniprotkb:folE(gene name)|psi-mi:folE(display_short)|uniprotkb:HP_0928(locus name)|uniprotkb:GTP cyclohydrolase I(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332701|imex:IM-22256-889 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56462|refseq:WP_000427004.1|refseq:NP_207720.1|go:"GO:0008270"(zinc ion binding)|go:"GO:0035998"(7,8-dihydroneopterin 3'-triphosphate biosynthetic process)|go:"GO:0046654"(tetrahydrofolate biosynthetic process)|interpro:IPR001474(GTP cyclohydrolase I)|interpro:IPR018234|interpro:IPR020602|interpro:IPR043133|interpro:IPR043134|ensemblbacteria:AAD07973(transcript)|ensemblbacteria:HP_0928(gene)|go:"GO:0003934"(GTP cyclohydrolase I activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006729"(tetrahydrobiopterin biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|dip:DIP-3586N|uniprotkb:P56462(identity) mint:P56462|refseq:WP_000427004.1|refseq:NP_207720.1|go:"GO:0008270"(zinc ion binding)|go:"GO:0035998"(7,8-dihydroneopterin 3'-triphosphate biosynthetic process)|go:"GO:0046654"(tetrahydrofolate biosynthetic process)|interpro:IPR001474(GTP cyclohydrolase I)|interpro:IPR018234|interpro:IPR020602|interpro:IPR043133|interpro:IPR043134|ensemblbacteria:AAD07973(transcript)|ensemblbacteria:HP_0928(gene)|go:"GO:0003934"(GTP cyclohydrolase I activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006729"(tetrahydrobiopterin biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|dip:DIP-3586N|uniprotkb:P56462(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JNWwOUF1bUepzK0YVn3ctvDZiY885962 rogid:JNWwOUF1bUepzK0YVn3ctvDZiY885962 intact-crc:C9BD59555A12EA3C|rigid:rOrhRNR8GQC8x0ENIUUPu2zQi00 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56463 uniprotkb:P56461 intact:EBI-9274282|ensemblbacteria:AAD08222 intact:EBI-9274286|ensemblbacteria:AAD08187 psi-mi:deod_helpy(display_long)|uniprotkb:deoD(gene name)|psi-mi:deoD(display_short)|uniprotkb:HP_1178(locus name) psi-mi:fmt_helpy(display_long)|uniprotkb:fmt(gene name)|psi-mi:fmt(display_short)|uniprotkb:HP_1141(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332719|imex:IM-22256-890 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:5LU0|refseq:WP_000187711.1|interpro:IPR035994|interpro:IPR000845(Nucleoside phosphorylase)|interpro:IPR004402(Purine nucleoside phosphorylase)|interpro:IPR018016|refseq:NP_207969.1|rcsb pdb:5MX6|rcsb pdb:5MX8|rcsb pdb:6F4W|rcsb pdb:6F4X|rcsb pdb:6F52|rcsb pdb:6F5A|rcsb pdb:6F5I|rcsb pdb:6G7X|ensemblbacteria:AAD08222(transcript)|ensemblbacteria:HP_1178(gene)|go:"GO:0004731"(purine-nucleoside phosphorylase activity)|go:"GO:0042278"(purine nucleoside metabolic process)|uniprotkb:P56463(identity) interpro:IPR041711|refseq:WP_001223483.1|interpro:IPR036477|interpro:IPR002376(Formyl transferase, N-terminal)|interpro:IPR005793(Formyl transferase, C-terminal)|interpro:IPR005794(Methionyl-tRNA formyltransferase)|interpro:IPR011034(Formyl transferase, C-terminal-like)|refseq:NP_207932.1|interpro:IPR044135|ensemblbacteria:AAD08187(transcript)|ensemblbacteria:HP_1141(gene)|go:"GO:0004479"(methionyl-tRNA formyltransferase activity)|go:"GO:0005829"(cytosol)|go:"GO:0071951"(conversion of methionyl-tRNA to N-formyl-methionyl-tRNA)|uniprotkb:P56461(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5MMs3XWnEJiib0BkYNhh9M0iFmM85962 rogid:YfDKOh0DAL1Vkb4OWSYvjEd5GxQ85962 intact-crc:DD6544D547A2C243|rigid:tdB9of8gJNIu1+0F0UyctXkEeGg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25629 uniprotkb:P56464 intact:EBI-7505515|intact:MINT-163208|ensemblbacteria:AAD08024 intact:EBI-9274302|ensemblbacteria:AAD07626 psi-mi:ftsa_helpy(display_long)|uniprotkb:ftsA(gene name)|psi-mi:ftsA(display_short)|uniprotkb:HP_0978(locus name) psi-mi:acp_helpy(display_long)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short)|uniprotkb:HP_0559(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332737|imex:IM-22256-891 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25629|refseq:WP_000400290.1|refseq:NP_207769.1|ensemblbacteria:AAD08024(transcript)|ensemblbacteria:HP_0978(gene)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051301"(cell division)|interpro:IPR003494(Cell division protein FtsA)|interpro:IPR020823|interpro:IPR043129|dip:DIP-3124N|uniprotkb:O25629(identity) refseq:WP_001163100.1|interpro:IPR020806|interpro:IPR036736|interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:NP_207354.1|ensemblbacteria:AAD07626(transcript)|ensemblbacteria:HP_0559(gene)|go:"GO:0000035"(acyl binding)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005829"(cytosol)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0031177"(phosphopantetheine binding)|uniprotkb:P56464(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein may be involved in anomalous filament growth. May be a component of the septum - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jRkQVJaEFRsCXTz0mUmRP13iyes85962 rogid:SNp5ySehTZ+IV2Mfah72iRNLF5885962 intact-crc:79D07F240B0CF715|rigid:0cboDK9gohl8OvJm4vOd0y3V6rc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25678 uniprotkb:P56464 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9274302|ensemblbacteria:AAD07626 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:acp_helpy(display_long)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short)|uniprotkb:HP_0559(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332755|imex:IM-22256-892 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_001163100.1|interpro:IPR020806|interpro:IPR036736|interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:NP_207354.1|ensemblbacteria:AAD07626(transcript)|ensemblbacteria:HP_0559(gene)|go:"GO:0000035"(acyl binding)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005829"(cytosol)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0031177"(phosphopantetheine binding)|uniprotkb:P56464(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:SNp5ySehTZ+IV2Mfah72iRNLF5885962 intact-crc:AA0083A669807577|rigid:ClmhbDStLzKK0DpeZqvEkrw/MCg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56464 uniprotkb:O25872 intact:EBI-9274302|ensemblbacteria:AAD07626 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:acp_helpy(display_long)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short)|uniprotkb:HP_0559(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332773|imex:IM-22256-893 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001163100.1|interpro:IPR020806|interpro:IPR036736|interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:NP_207354.1|ensemblbacteria:AAD07626(transcript)|ensemblbacteria:HP_0559(gene)|go:"GO:0000035"(acyl binding)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005829"(cytosol)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0031177"(phosphopantetheine binding)|uniprotkb:P56464(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:SNp5ySehTZ+IV2Mfah72iRNLF5885962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:CA1ECFA861CA5B7F|rigid:p7wyRGAvmhVwGU5hbS9FfGTJrAw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZKV7 uniprotkb:P56464 intact:EBI-9269328|ensemblbacteria:AAD06405 intact:EBI-9274302|ensemblbacteria:AAD07626 psi-mi:q9zkv7_helpj(display_long)|uniprotkb:jhp_0828(locus name) psi-mi:acp_helpy(display_long)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short)|uniprotkb:HP_0559(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332791|imex:IM-22256-894 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000917077.1|ensemblbacteria:AAD06405(transcript)|ensemblbacteria:jhp_0828(gene)|uniprotkb:Q9ZKV7(identity) refseq:WP_001163100.1|interpro:IPR020806|interpro:IPR036736|interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:NP_207354.1|ensemblbacteria:AAD07626(transcript)|ensemblbacteria:HP_0559(gene)|go:"GO:0000035"(acyl binding)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005829"(cytosol)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0031177"(phosphopantetheine binding)|uniprotkb:P56464(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:32ur07LEjcTYTp1Bj4VFb/unpYo85963 rogid:SNp5ySehTZ+IV2Mfah72iRNLF5885962 intact-crc:7D83B4FE475664D8|rigid:18+1bYq8vMzNwk1xsNAEwzxr9EI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34754 uniprotkb:P56466 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7544205|intact:MINT-182559|ensemblbacteria:AAD07616 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:rho_helpy(display_long)|uniprotkb:rho(gene name)|psi-mi:rho(display_short)|uniprotkb:ATP-dependent helicase Rho(gene name synonym)|uniprotkb:HP_0550(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332809|imex:IM-22256-895 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) dip:DIP-3446N|refseq:WP_001004715.1|mint:P56466|refseq:NP_207345.1|interpro:IPR011113(Rho termination factor, RNA-binding)|interpro:IPR011129(Cold shock protein)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR027417|interpro:IPR036269|interpro:IPR041703|interpro:IPR011112(Rho termination factor, N-terminal)|ensemblbacteria:AAD07616(transcript)|ensemblbacteria:HP_0550(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0004386"(helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0008186"(ATP-dependent activity, acting on RNA)|go:"GO:0016787"(hydrolase activity)|interpro:IPR000194(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR004665(Transcription termination factor Rho)|uniprotkb:P56466(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:Q+Y9YYs3lDaGEgQ9QEFYej4+fLE85962 intact-crc:1BF3DDBD1FDC43ED|rigid:TzmVWCCmgn9+MT0mlw02fwPB+YA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25092 uniprotkb:P56467 intact:EBI-7493789|intact:MINT-161216|ensemblbacteria:AAD07392 intact:EBI-9274384|ensemblbacteria:AAD07644 psi-mi:flgh_helpy(display_long)|uniprotkb:flgH(gene name)|psi-mi:flgH(display_short)|uniprotkb:HP_0325(locus name)|uniprotkb:Basal body L-ring protein(gene name synonym) psi-mi:fold_helpy(display_long)|uniprotkb:folD(gene name)|psi-mi:folD(display_short)|uniprotkb:HP_0577(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332827|imex:IM-22256-896 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25092|refseq:NP_207123.1|refseq:WP_000709989.1|ensemblbacteria:AAD07392(transcript)|ensemblbacteria:HP_0325(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0009279"(cell outer membrane)|go:"GO:0009427"(bacterial-type flagellum basal body, distal rod, L ring)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR000527(Flagellar L-ring protein)|dip:DIP-3206N|uniprotkb:O25092(identity) interpro:IPR036291|refseq:NP_207372.1|interpro:IPR000672(Tetrahydrofolate dehydrogenase/cyclohydrolase)|interpro:IPR020630|interpro:IPR020631|interpro:IPR020867|ensemblbacteria:AAD07644(transcript)|ensemblbacteria:HP_0577(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0004477"(methenyltetrahydrofolate cyclohydrolase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006164"(purine nucleotide biosynthetic process)|go:"GO:0009086"(methionine biosynthetic process)|go:"GO:0035999"(tetrahydrofolate interconversion)|go:"GO:0004488"("methylenetetrahydrofolate dehydrogenase (NADP+) activity")|uniprotkb:P56467(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MrKUGtUwSfmxEg4i9HrJydiu+HU85962 rogid:SZm6dB34/GA+94+/GLvyMGDAjhY85962 intact-crc:24BE853E5256E93E|rigid:p5HP05tdMm1ASyZ9b6AaR4ivPEE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56120 uniprotkb:P56467 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9274384|ensemblbacteria:AAD07644 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:fold_helpy(display_long)|uniprotkb:folD(gene name)|psi-mi:folD(display_short)|uniprotkb:HP_0577(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332845|imex:IM-22256-897 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) interpro:IPR036291|refseq:NP_207372.1|interpro:IPR000672(Tetrahydrofolate dehydrogenase/cyclohydrolase)|interpro:IPR020630|interpro:IPR020631|interpro:IPR020867|ensemblbacteria:AAD07644(transcript)|ensemblbacteria:HP_0577(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0004477"(methenyltetrahydrofolate cyclohydrolase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006164"(purine nucleotide biosynthetic process)|go:"GO:0009086"(methionine biosynthetic process)|go:"GO:0035999"(tetrahydrofolate interconversion)|go:"GO:0004488"("methylenetetrahydrofolate dehydrogenase (NADP+) activity")|uniprotkb:P56467(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:SZm6dB34/GA+94+/GLvyMGDAjhY85962 intact-crc:E4034712F0D9054C|rigid:RmNcyWDeLngmcgwaPlKb7xQe2fg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56737 uniprotkb:P56737 intact:EBI-9274418 intact:EBI-9274418 psi-mi:trpd_helpy(display_long)|uniprotkb:trpD(gene name)|psi-mi:trpD(display_short)|uniprotkb:HP_1280(locus name) psi-mi:trpd_helpy(display_long)|uniprotkb:trpD(gene name)|psi-mi:trpD(display_short)|uniprotkb:HP_1280(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332863|imex:IM-22256-898 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000658921.1|interpro:IPR035902|interpro:IPR036320|interpro:IPR000312(Glycosyl transferase, family 3)|interpro:IPR005940(Anthranilate phosphoribosyl transferase)|interpro:IPR017459(Glycosyl transferase, family 3, N-terminal)|refseq:NP_208072.1|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004048"(anthranilate phosphoribosyltransferase activity)|go:"GO:0005829"(cytosol)|uniprotkb:P56737(identity) refseq:WP_000658921.1|interpro:IPR035902|interpro:IPR036320|interpro:IPR000312(Glycosyl transferase, family 3)|interpro:IPR005940(Anthranilate phosphoribosyl transferase)|interpro:IPR017459(Glycosyl transferase, family 3, N-terminal)|refseq:NP_208072.1|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004048"(anthranilate phosphoribosyltransferase activity)|go:"GO:0005829"(cytosol)|uniprotkb:P56737(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bGFu+LcpZZ+qBSc0REpiCs37fJ085962 rogid:bGFu+LcpZZ+qBSc0REpiCs37fJ085962 intact-crc:4F8301F72C82DDC3|rigid:T+mscunc1JN0cS8YmWwlz9RJt6M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P60325 uniprotkb:O25417 intact:EBI-7716858|ensemblbacteria:AAD07826|intact:MINT-173310|uniprotkb:O25467|uniprotkb:Q9ZL67 intact:EBI-9262268|ensemblbacteria:AAD07765 psi-mi:rpoz_helpy(display_long)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short)|uniprotkb:HP_0776(locus name)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:RNA polymerase omega subunit(gene name synonym) psi-mi:o25417_helpy(display_long)|uniprotkb:HP_0715(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332881|imex:IM-22256-899 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P60325|interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|ensemblbacteria:AAD07826(transcript)|ensemblbacteria:HP_0776(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|refseq:WP_000712202.1|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR036161|refseq:NP_207569.1|uniprotkb:P60325(identity) refseq:WP_000353241.1|interpro:IPR030921|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:NP_207509.1|ensemblbacteria:AAD07765(transcript)|ensemblbacteria:HP_0715(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015803"(branched-chain amino acid transport)|go:"GO:0015807"(L-amino acid transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|uniprotkb:O25417(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lrHaVe7nTj02K8ZY0B4ByqijDC085962 rogid:EtbfiHVp0ygQ/Yc+5Yl7Y4UZha485962 intact-crc:0C319B39D97F3BC0|rigid:ncYBBN7Szs6LmlcUOJQnbpBVRgs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25495 uniprotkb:P60325 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-7716858|ensemblbacteria:AAD07826|intact:MINT-173310|uniprotkb:O25467|uniprotkb:Q9ZL67 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:rpoz_helpy(display_long)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short)|uniprotkb:HP_0776(locus name)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:RNA polymerase omega subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332899|imex:IM-22256-900 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) mint:P60325|interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|ensemblbacteria:AAD07826(transcript)|ensemblbacteria:HP_0776(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|refseq:WP_000712202.1|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR036161|refseq:NP_207569.1|uniprotkb:P60325(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:lrHaVe7nTj02K8ZY0B4ByqijDC085962 intact-crc:260C2EBA814AB898|rigid:IWhJ/P/ITvEue+8py1V3Yy597Po false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P60325 uniprotkb:O25546 intact:EBI-7716858|ensemblbacteria:AAD07826|intact:MINT-173310|uniprotkb:O25467|uniprotkb:Q9ZL67 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:rpoz_helpy(display_long)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short)|uniprotkb:HP_0776(locus name)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:RNA polymerase omega subunit(gene name synonym) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332917|imex:IM-22256-901 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P60325|interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|ensemblbacteria:AAD07826(transcript)|ensemblbacteria:HP_0776(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|refseq:WP_000712202.1|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR036161|refseq:NP_207569.1|uniprotkb:P60325(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lrHaVe7nTj02K8ZY0B4ByqijDC085962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:6307A99DF83D2FE1|rigid:3QDnG8BjGdScLAWrkz8nZWwY92I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P60325 uniprotkb:O25933 intact:EBI-7716858|ensemblbacteria:AAD07826|intact:MINT-173310|uniprotkb:O25467|uniprotkb:Q9ZL67 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 psi-mi:rpoz_helpy(display_long)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short)|uniprotkb:HP_0776(locus name)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:RNA polymerase omega subunit(gene name synonym) psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332935|imex:IM-22256-902 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P60325|interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|ensemblbacteria:AAD07826(transcript)|ensemblbacteria:HP_0776(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|refseq:WP_000712202.1|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR036161|refseq:NP_207569.1|uniprotkb:P60325(identity) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lrHaVe7nTj02K8ZY0B4ByqijDC085962 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 intact-crc:E17F5F094FDCFB56|rigid:GhSqK7B2sUUhgZN1tPnxyHjvxbA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P60325 uniprotkb:O26080 intact:EBI-7716858|ensemblbacteria:AAD07826|intact:MINT-173310|uniprotkb:O25467|uniprotkb:Q9ZL67 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:rpoz_helpy(display_long)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short)|uniprotkb:HP_0776(locus name)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:RNA polymerase omega subunit(gene name synonym) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332953|imex:IM-22256-903 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P60325|interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|ensemblbacteria:AAD07826(transcript)|ensemblbacteria:HP_0776(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|refseq:WP_000712202.1|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR036161|refseq:NP_207569.1|uniprotkb:P60325(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lrHaVe7nTj02K8ZY0B4ByqijDC085962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:175187C6E56E052C|rigid:kwv7Nz/vRlou0IqL1yvPt3Avqas false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94845 uniprotkb:P65108 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-7668479|ensemblbacteria:AAD08360|uniprotkb:P55974|intact:MINT-4074587 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:if1_helpy(display_long)|uniprotkb:infA(gene name)|psi-mi:infA(display_short)|uniprotkb:HP_1298(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332971|imex:IM-22256-904 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) ensemblbacteria:AAD08360(transcript)|ensemblbacteria:HP_1298(gene)|go:"GO:0003743"(translation initiation factor activity)|go:"GO:0005829"(cytosol)|go:"GO:0019843"(rRNA binding)|go:"GO:0043022"(ribosome binding)|mint:P65108|interpro:IPR004368(Translation initiation factor IF-1)|interpro:IPR006196(S1, IF1 type)|refseq:WP_000090248.1|refseq:NP_208090.1|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022967|uniprotkb:P65108(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3 figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:SwjUtc3/MXEaVtxN40k8OL3R7+w85962 intact-crc:F4FE6DBDF5E612F9|rigid:3t19L6NK6XOtlOQXFYkQQRylso4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P66052 uniprotkb:O07678 intact:EBI-7696474|ensemblbacteria:AAD08248|intact:MINT-4076533|uniprotkb:P56037 intact:EBI-7696493|ensemblbacteria:AAD08114|intact:MINT-4076544 psi-mi:rl11_helpy(display_long)|uniprotkb:rplK(gene name)|psi-mi:rplK(display_short)|uniprotkb:HP_1202(locus name) psi-mi:prma_helpy(display_long)|uniprotkb:prmA(gene name)|psi-mi:prmA(display_short)|uniprotkb:hsm(gene name synonym)|uniprotkb:HP_1068(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9332989|imex:IM-22256-905 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08248(transcript)|ensemblbacteria:HP_1202(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|mint:P66052|interpro:IPR000911(Ribosomal protein L11)|interpro:IPR006519(Ribosomal protein L11, bacterial-type)|refseq:NP_207993.1|interpro:IPR020783|interpro:IPR020784|interpro:IPR020785|refseq:WP_001085997.1|interpro:IPR036769|interpro:IPR036796|uniprotkb:P66052(identity) ensemblbacteria:AAD08114(transcript)|ensemblbacteria:HP_1068(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0008276"(protein methyltransferase activity)|interpro:IPR004498(Ribosomal protein L11 methyltransferase)|interpro:IPR029063|mint:O07678|refseq:NP_207859.1|refseq:WP_000917395.1|dip:DIP-3670N|uniprotkb:O07678(identity) psi-mi:"MI:0469"(intact) function:This protein binds directly to 23S ribosomal RNA|comment:mint comment:mint|function:Methylates ribosomal protein L11 figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0KAU+/nzIYlHM5op9KekyumBuGk85962 rogid:+4M04wmHCL1eTqXYXYQpaU056Vw85962 intact-crc:833DC9380110E6EF|rigid:KWY7/aUtExIgLbeNxppa+m2RNk8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25880 uniprotkb:P66119 intact:EBI-7497265|intact:MINT-171630|ensemblbacteria:AAD08366 intact:EBI-9269182|uniprotkb:P56048|ensemblbacteria:AAD08356 psi-mi:o25880_helpy(display_long)|uniprotkb:HP_1321(locus name) psi-mi:rl23_helpy(display_long)|uniprotkb:rplW(gene name)|psi-mi:rplW(display_short)|uniprotkb:HP_1317(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333007|imex:IM-22256-906 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25880|refseq:NP_208113.1|ensemblbacteria:AAD08366(transcript)|ensemblbacteria:HP_1321(gene)|go:"GO:0005524"(ATP binding)|interpro:IPR027417|refseq:WP_001268291.1|dip:DIP-3339N|uniprotkb:O25880(identity) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|refseq:WP_000763613.1|interpro:IPR012678(Ribosomal protein L23/L15e, core)|interpro:IPR013025(Ribosomal protein L25/L23)|refseq:NP_208109.1|ensemblbacteria:AAD08356(transcript)|ensemblbacteria:HP_1317(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|uniprotkb:P66119(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KJdUSA35nj6j41lYMx/gMx0124k85962 rogid:v1pJq0ns1aWw6imhkh/Eb/q3ijA85962 intact-crc:AE7599814BFA5F18|rigid:ZLChjrHwPAkoQaTNcfoMF7UG5Fc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q9ZKN9 uniprotkb:P66185 intact:EBI-9272494|ensemblbacteria:AAD06474 intact:EBI-9274554|uniprotkb:P56053|ensemblbacteria:AAD07617 psi-mi:q9zkn9_helpj(display_long)|uniprotkb:jhp_0896(locus name) psi-mi:rl31_helpy(display_long)|uniprotkb:rpmE(gene name)|psi-mi:rpmE(display_short)|uniprotkb:HP_0551(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333025|imex:IM-22256-907 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06474(transcript)|ensemblbacteria:jhp_0896(gene)|uniprotkb:Q9ZKN9(identity) interpro:IPR042105|refseq:WP_000715278.1|interpro:IPR034704|interpro:IPR002150(Ribosomal protein L31)|interpro:IPR027491|refseq:NP_207346.1|ensemblbacteria:AAD07617(transcript)|ensemblbacteria:HP_0551(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|uniprotkb:P66185(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wZWkUz1EqGakwJNkpztuvtP/0LU85963 rogid:BNQKWWmkmao2hDwrvnrCHkYU9rw85962 intact-crc:791A7AC4D8C9F5F1|rigid:DgxwEv0jaK9rFnTkVTzdocTNfzE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P56428 uniprotkb:P66269 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 intact:EBI-9265809|uniprotkb:P56057|ensemblbacteria:AAD07195 psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:rl35_helpy(display_long)|uniprotkb:rpmI(gene name)|psi-mi:rpmI(display_short)|uniprotkb:HP_0125(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333043|imex:IM-22256-908 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) refseq:WP_001125542.1|interpro:IPR001706(Ribosomal protein L35)|interpro:IPR018265|interpro:IPR021137|refseq:NP_206925.1|interpro:IPR037229|ensemblbacteria:AAD07195(transcript)|ensemblbacteria:HP_0125(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P66269(identity) psi-mi:"MI:0469"(intact) comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 rogid:nqv/YwVuZmlPcA4kNES9/1bGRFY85962 intact-crc:233A7C3ABC612018|rigid:h8bJYi1b/k24vecwNkwcY3DmfYE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24853 uniprotkb:P66328 intact:EBI-7635518|ensemblbacteria:AAD07074|intact:MINT-164319 intact:EBI-9274592|uniprotkb:P56017|ensemblbacteria:AAD08359 psi-mi:nusb_helpy(display_long)|uniprotkb:nusB(gene name)|psi-mi:nusB(display_short)|uniprotkb:Antitermination factor NusB(gene name synonym)|uniprotkb:HP_0001(locus name) psi-mi:rs10_helpy(display_long)|uniprotkb:rpsJ(gene name)|psi-mi:rpsJ(display_short)|uniprotkb:HP_1320(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333061|imex:IM-22256-909 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000235740.1|ensemblbacteria:AAD07074(transcript)|ensemblbacteria:HP_0001(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0031564"(transcription antitermination)|interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR011605(NusB antitermination factor)|interpro:IPR035926|mint:O24853|refseq:NP_206803.1|dip:DIP-3047N|uniprotkb:O24853(identity) refseq:WP_000411561.1|interpro:IPR036838|interpro:IPR001848(Ribosomal protein S10)|interpro:IPR018268|interpro:IPR027486|refseq:NP_208112.1|ensemblbacteria:AAD08359(transcript)|ensemblbacteria:HP_1320(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|uniprotkb:P66328(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Involved in the transcription termination process - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:PQhiYWqCl3QjodzOzIzpwmyiFvs85962 rogid:tlAEMxA2dG3IXFwgs4cAXclvnWw85962 intact-crc:F631AFFEA7C76693|rigid:HaHOPle3cO8DKPzutiDUPDQLBdk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P66459 uniprotkb:P56013 intact:EBI-7719400|ensemblbacteria:AAD08290|uniprotkb:P56025|intact:MINT-4077748 intact:EBI-7719651|ensemblbacteria:AAD08292|intact:MINT-162949 psi-mi:rs18_helpy(display_long)|uniprotkb:rpsR(gene name)|psi-mi:rpsR(display_short)|uniprotkb:HP_1244(locus name) psi-mi:rs6_helpy(display_long)|uniprotkb:rpsF(gene name)|psi-mi:rpsF(display_short)|uniprotkb:HP_1246(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333079|imex:IM-22256-910 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P66459|interpro:IPR001648(Ribosomal protein S18)|ensemblbacteria:AAD08290(transcript)|ensemblbacteria:HP_1244(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|refseq:WP_000440196.1|interpro:IPR018275|refseq:NP_208036.1|interpro:IPR036870|uniprotkb:P66459(identity) mint:P56013|ensemblbacteria:AAD08292(transcript)|ensemblbacteria:HP_1246(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|interpro:IPR000529(Ribosomal protein S6)|interpro:IPR014717(Translation elongation factor EF1B/ribosomal protein S6)|interpro:IPR020814|interpro:IPR020815|interpro:IPR035980|refseq:WP_001216713.1|refseq:NP_208038.1|dip:DIP-3684N|uniprotkb:P56013(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit comment:mint|function:Binds together with S18 to 16S ribosomal RNA figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Y2s89Xw9yRZgf5jcjNEjR78Ocko85962 rogid:QK//mTtnwf6fUg3vTDOhZGCcwQc85962 intact-crc:B714051B62A04985|rigid:MpKjCdWnzWnfyprYCVrULLzB08Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P66637 uniprotkb:P56428 intact:EBI-7698660|ensemblbacteria:AAD07153|uniprotkb:P56016|intact:MINT-4076780 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 psi-mi:rs9_helpy(display_long)|uniprotkb:rpsI(gene name)|psi-mi:rpsI(display_short)|uniprotkb:HP_0083(locus name) psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333097|imex:IM-22256-911 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000754(Ribosomal protein S9)|ensemblbacteria:AAD07153(transcript)|ensemblbacteria:HP_0083(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0022627"(cytosolic small ribosomal subunit)|mint:P66637|refseq:WP_001227269.1|interpro:IPR020568|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|refseq:NP_206883.1|interpro:IPR020574|interpro:IPR023035|uniprotkb:P66637(identity) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tqc1vYVKraG2ma7JS8CQnAv2urA85962 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 intact-crc:BAE77C4C97AEB9F1|rigid:r6PmbF7EY3ItwajzA9bJY4ltgqA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24926 uniprotkb:P66928 intact:EBI-7494854|intact:MINT-159805|ensemblbacteria:AAD07168 intact:EBI-9274639|uniprotkb:P56430|ensemblbacteria:AAD07874 psi-mi:queh_helpy(display_long)|uniprotkb:Queuosine biosynthesis protein QueH(gene name synonym)|uniprotkb:HP_0100(locus name)|uniprotkb:queH(gene name)|psi-mi:queH(display_short) psi-mi:thio_helpy(display_long)|uniprotkb:trxA(gene name)|psi-mi:trxA(display_short)|uniprotkb:HP_0824(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333115|imex:IM-22256-912 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24926|refseq:NP_206900.1|refseq:WP_000905219.1|ensemblbacteria:AAD07168(transcript)|ensemblbacteria:HP_0100(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0052693"(epoxyqueuosine reductase activity)|interpro:IPR003828(Protein of unknown function DUF208)|dip:DIP-3170N|uniprotkb:O24926(identity) refseq:WP_000020199.1|interpro:IPR013766(Thioredoxin domain)|interpro:IPR036249|interpro:IPR005746(Thioredoxin)|interpro:IPR017937|refseq:NP_207617.1|rcsb pdb:6BKV|ensemblbacteria:AAD07874(transcript)|ensemblbacteria:HP_0824(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|uniprotkb:P66928(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wq9kyscW1vuBxHL6xNZc6vRBdys85962 rogid:0fwz8OwAwthnN0DONzK2bfG957s85962 intact-crc:E92BD96F8A08CB97|rigid:UMfkM0djCX8/DxoRH4kMx+nOzhw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25949 uniprotkb:P66928 intact:EBI-7521106|intact:MINT-178538|ensemblbacteria:AAD08436 intact:EBI-9274639|uniprotkb:P56430|ensemblbacteria:AAD07874 psi-mi:o25949_helpy(display_long)|uniprotkb:HP_1399(locus name) psi-mi:thio_helpy(display_long)|uniprotkb:trxA(gene name)|psi-mi:trxA(display_short)|uniprotkb:HP_0824(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333133|imex:IM-22256-913 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25949|refseq:WP_000604403.1|refseq:NP_208190.1|ensemblbacteria:AAD08436(transcript)|ensemblbacteria:HP_1399(gene)|go:"GO:0004053"(arginase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019547"(arginine catabolic process to ornithine)|go:"GO:0030145"(manganese ion binding)|interpro:IPR006035(Ureohydrolase)|interpro:IPR014033(Arginase, subgroup)|interpro:IPR023696|rcsb pdb:4G3H|dip:DIP-3188N|uniprotkb:O25949(identity) refseq:WP_000020199.1|interpro:IPR013766(Thioredoxin domain)|interpro:IPR036249|interpro:IPR005746(Thioredoxin)|interpro:IPR017937|refseq:NP_207617.1|rcsb pdb:6BKV|ensemblbacteria:AAD07874(transcript)|ensemblbacteria:HP_0824(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|uniprotkb:P66928(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ISKY343dYDJttsr2WAQRxW+cy7w85962 rogid:0fwz8OwAwthnN0DONzK2bfG957s85962 intact-crc:6A20EF345AEB90F7|rigid:qpWr7kMBsw071CxlnuRCD8j2RIU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P66928 uniprotkb:O26034 intact:EBI-9274639|uniprotkb:P56430|ensemblbacteria:AAD07874 intact:EBI-9270212|ensemblbacteria:AAD08540 psi-mi:thio_helpy(display_long)|uniprotkb:trxA(gene name)|psi-mi:trxA(display_short)|uniprotkb:HP_0824(locus name) psi-mi:o26034_helpy(display_long)|uniprotkb:HP_1504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333151|imex:IM-22256-914 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000020199.1|interpro:IPR013766(Thioredoxin domain)|interpro:IPR036249|interpro:IPR005746(Thioredoxin)|interpro:IPR017937|refseq:NP_207617.1|rcsb pdb:6BKV|ensemblbacteria:AAD07874(transcript)|ensemblbacteria:HP_0824(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|uniprotkb:P66928(identity) refseq:WP_000375247.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR007848(Methyltransferase small)|refseq:NP_208295.1|interpro:IPR029063|ensemblbacteria:AAD08540(transcript)|ensemblbacteria:HP_1504(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|uniprotkb:O26034(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0fwz8OwAwthnN0DONzK2bfG957s85962 rogid:R1w4/PZ85EWwDASCAT59chQN8c485962 intact-crc:D4A2DA397924AC04|rigid:xc2Z/r+SJk9YkgV8YFKrMjlD1KY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25140 uniprotkb:P67708 intact:EBI-7494959|intact:MINT-165724|ensemblbacteria:AAD07445 intact:EBI-9261334|uniprotkb:O26079|ensemblbacteria:AAD08597 psi-mi:o25140_helpy(display_long)|uniprotkb:HP_0377(locus name) psi-mi:flie_helpy(display_long)|uniprotkb:fliE(gene name)|psi-mi:fliE(display_short)|uniprotkb:HP_1557(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333169|imex:IM-22256-915 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25140|refseq:NP_207175.1|refseq:WP_000492204.1|ensemblbacteria:AAD07445(transcript)|interpro:IPR012336(Thioredoxin-like fold)|interpro:IPR036249|ensemblbacteria:HP_0377(gene)|interpro:IPR041737|rcsb pdb:4FYB|rcsb pdb:4FYC|dip:DIP-3196N|uniprotkb:O25140(identity) refseq:WP_001147918.1|interpro:IPR001624(Flagellar hook-basal body complex protein FliE)|refseq:NP_208348.1|ensemblbacteria:AAD08597(transcript)|ensemblbacteria:HP_1557(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005198"(structural molecule activity)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|uniprotkb:P67708(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y/IqqqbhmFhVyCpExJVGaeLvLUw85962 rogid:97Tu4wBlhYAvtjGql+Y0ycyhyps85962 intact-crc:B7319B6E9A35EF08|rigid:7nQqobtcZ+L4+xSMGdyX4SMEpCI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P69996 uniprotkb:O25767 intact:EBI-7566591|uniprotkb:P14917|uniprotkb:Q9R3B3|intact:MINT-1567059|ensemblbacteria:AAD07143 intact:EBI-9266862|ensemblbacteria:AAD08193 psi-mi:ure1_helpy(display_long)|uniprotkb:ureB(gene name)|psi-mi:ureB(display_short)|uniprotkb:hpuB(gene name synonym)|uniprotkb:HP_0072(locus name)|uniprotkb:Urea amidohydrolase subunit beta(gene name synonym) psi-mi:rimm_helpy(display_long)|uniprotkb:rimM(gene name)|psi-mi:rimM(display_short)|uniprotkb:HP_1149(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333187|imex:IM-22256-916 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005848(Urease, alpha subunit)|interpro:IPR006680(Amidohydrolase 1)|interpro:IPR011612(Urease alpha-subunit, N-terminal)|interpro:IPR032466|mint:P69996|refseq:NP_206872.1|interpro:IPR011059(Metal-dependent hydrolase, composite)|interpro:IPR017951|interpro:IPR017950|ensemblbacteria:AAD07143(transcript)|ensemblbacteria:HP_0072(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0009039"(urease activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0043419"(urea catabolic process)|rcsb pdb:1E9Y|rcsb pdb:1E9Z|refseq:WP_000724295.1|interpro:IPR029754|uniprotkb:P69996(identity) refseq:WP_000254337.1|interpro:IPR002676(RimM protein)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR011033(PRC-barrel-like)|interpro:IPR011961(16S rRNA processing protein RimM)|interpro:IPR027275|refseq:NP_207940.1|interpro:IPR036976|ensemblbacteria:AAD08193(transcript)|ensemblbacteria:HP_1149(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005840"(ribosome)|go:"GO:0006364"(rRNA processing)|go:"GO:0042274"(ribosomal small subunit biogenesis)|go:"GO:0043022"(ribosome binding)|uniprotkb:O25767(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Ammonia produced by ureolysis increases the gastric pH thereby providing an environment permissive for colonization of the stomach - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KQKothcOGkI9jaA8M1oLuzrZa5o85962 rogid:9xiE1imgBr+he7Fh0v2pKOttrSo85962 intact-crc:6CA4202FC90B40FF|rigid:MuVhV5OhzTAkihfmGWlPwhebO+Q false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O34754 uniprotkb:P69996 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7566591|uniprotkb:P14917|uniprotkb:Q9R3B3|intact:MINT-1567059|ensemblbacteria:AAD07143 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:ure1_helpy(display_long)|uniprotkb:ureB(gene name)|psi-mi:ureB(display_short)|uniprotkb:hpuB(gene name synonym)|uniprotkb:HP_0072(locus name)|uniprotkb:Urea amidohydrolase subunit beta(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333205|imex:IM-22256-917 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) interpro:IPR005848(Urease, alpha subunit)|interpro:IPR006680(Amidohydrolase 1)|interpro:IPR011612(Urease alpha-subunit, N-terminal)|interpro:IPR032466|mint:P69996|refseq:NP_206872.1|interpro:IPR011059(Metal-dependent hydrolase, composite)|interpro:IPR017951|interpro:IPR017950|ensemblbacteria:AAD07143(transcript)|ensemblbacteria:HP_0072(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0009039"(urease activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0043419"(urea catabolic process)|rcsb pdb:1E9Y|rcsb pdb:1E9Z|refseq:WP_000724295.1|interpro:IPR029754|uniprotkb:P69996(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Ammonia produced by ureolysis increases the gastric pH thereby providing an environment permissive for colonization of the stomach figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:KQKothcOGkI9jaA8M1oLuzrZa5o85962 intact-crc:8D3CD490C8105A4E|rigid:3g9suVIn5jde/jr006+OYtNxBSA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q09067 uniprotkb:P71403 intact:EBI-7718225|ensemblbacteria:AAD07130|intact:MINT-184889 intact:EBI-6409045|ensemblbacteria:AAD08113|uniprotkb:O07677 psi-mi:ureh_helpy(display_long)|uniprotkb:HP_0067(locus name)|uniprotkb:ureH(gene name)|psi-mi:ureH(display_short) psi-mi:chey1_helpy(display_long)|uniprotkb:cheY1(gene name)|psi-mi:cheY1(display_short)|uniprotkb:HP_1067(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333223|imex:IM-22256-918 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:Q09067|ensemblbacteria:AAD07130(transcript)|ensemblbacteria:HP_0067(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|interpro:IPR002669(Urease accessory protein UreD)|rcsb pdb:3SF5|rcsb pdb:4HI0|refseq:WP_001099471.1|refseq:NP_206867.1|dip:DIP-3135N|uniprotkb:Q09067(identity) ensemblbacteria:AAD08113(transcript)|ensemblbacteria:HP_1067(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0005737"(cytoplasm)|go:"GO:0006935"(chemotaxis)|go:"GO:0046872"(metal ion binding)|go:"GO:0097588"(archaeal or bacterial-type flagellum-dependent cell motility)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR011006(CheY-like)|rcsb pdb:3GWG|rcsb pdb:3H1E|rcsb pdb:3H1F|rcsb pdb:3H1G|mint:P71403|refseq:WP_000772151.1|refseq:NP_207858.1|dip:DIP-3256N|uniprotkb:P71403(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Probably facilitates nickel incorporation - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:39uCVh4XZ05LDXWtWk77ZigxqSE85962 rogid:t3TXKPD7fMLt6xSOwudm/eFYw7M85962 intact-crc:F0319DB0708AF773|rigid:937b4GOgZ6k557qMjJkxArh5kLQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25214 uniprotkb:P77872 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-7585674|intact:MINT-165967|uniprotkb:P94823|ensemblbacteria:AAD07923 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:cata_helpy(display_long)|uniprotkb:HP_0875(locus name)|uniprotkb:katA(gene name)|psi-mi:katA(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333241|imex:IM-22256-919 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) mint:P77872|refseq:WP_000247370.1|refseq:NP_207669.1|ensemblbacteria:AAD07923(transcript)|ensemblbacteria:HP_0875(gene)|go:"GO:0004096"(catalase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0020037"(heme binding)|go:"GO:0042542"(response to hydrogen peroxide)|go:"GO:0042744"(hydrogen peroxide catabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR002226(Catalase)|interpro:IPR011614(Catalase, N-terminal)|interpro:IPR018028|interpro:IPR020835|interpro:IPR024708|interpro:IPR024711|interpro:IPR040333|rcsb pdb:1QWL|rcsb pdb:1QWM|rcsb pdb:2A9E|rcsb pdb:2IQF|interpro:IPR010582(Catalase-related)|dip:DIP-3559N|uniprotkb:P77872(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:SK41UEV6nf8PQYCc4Wiaap4InFw85962 intact-crc:B7CCF94D18D6A369|rigid:kKFaSOpBq9X6tTs8rTO8lQJlSBA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25542 uniprotkb:P77872 intact:EBI-7585664|intact:MINT-165980|ensemblbacteria:AAD07926 intact:EBI-7585674|intact:MINT-165967|uniprotkb:P94823|ensemblbacteria:AAD07923 psi-mi:o25542_helpy(display_long)|uniprotkb:HP_0874(locus name) psi-mi:cata_helpy(display_long)|uniprotkb:HP_0875(locus name)|uniprotkb:katA(gene name)|psi-mi:katA(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333259|imex:IM-22256-920 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25542|refseq:WP_000829005.1|refseq:NP_207668.1|ensemblbacteria:AAD07926(transcript)|ensemblbacteria:HP_0874(gene)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR019546|dip:DIP-3560N|uniprotkb:O25542(identity) mint:P77872|refseq:WP_000247370.1|refseq:NP_207669.1|ensemblbacteria:AAD07923(transcript)|ensemblbacteria:HP_0875(gene)|go:"GO:0004096"(catalase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0020037"(heme binding)|go:"GO:0042542"(response to hydrogen peroxide)|go:"GO:0042744"(hydrogen peroxide catabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR002226(Catalase)|interpro:IPR011614(Catalase, N-terminal)|interpro:IPR018028|interpro:IPR020835|interpro:IPR024708|interpro:IPR024711|interpro:IPR040333|rcsb pdb:1QWL|rcsb pdb:1QWM|rcsb pdb:2A9E|rcsb pdb:2IQF|interpro:IPR010582(Catalase-related)|dip:DIP-3559N|uniprotkb:P77872(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oEN6d5DcP6kTvTh7BXix4GXleNo85962 rogid:SK41UEV6nf8PQYCc4Wiaap4InFw85962 intact-crc:885FA45552F8AB23|rigid:74ZfWipdZjLryx4jlZOSGy2DWZw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94842 uniprotkb:P94842 intact:EBI-528090|uniprotkb:O25238|ensemblbacteria:AAD07561 intact:EBI-528090|uniprotkb:O25238|ensemblbacteria:AAD07561 psi-mi:ybgc_helpy(display_long)|uniprotkb:ybgC(gene name)|psi-mi:ybgC(display_short)|uniprotkb:HP_0496(locus name) psi-mi:ybgc_helpy(display_long)|uniprotkb:ybgC(gene name)|psi-mi:ybgC(display_short)|uniprotkb:HP_0496(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333295|imex:IM-22256-921 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207293.1|ensemblbacteria:AAD07561(transcript)|ensemblbacteria:HP_0496(gene)|go:"GO:0006629"(lipid metabolic process)|go:"GO:0047617"(acyl-CoA hydrolase activity)|interpro:IPR006683(Thioesterase superfamily)|interpro:IPR006684(4-hydroxybenzoyl-CoA thioesterase)|interpro:IPR008272(4-hydroxybenzoyl-CoA thioesterase, active site)|interpro:IPR029069|rcsb pdb:2PZH|refseq:WP_001203797.1|mint:P94842|dip:DIP-3437N|uniprotkb:P94842(identity) refseq:NP_207293.1|ensemblbacteria:AAD07561(transcript)|ensemblbacteria:HP_0496(gene)|go:"GO:0006629"(lipid metabolic process)|go:"GO:0047617"(acyl-CoA hydrolase activity)|interpro:IPR006683(Thioesterase superfamily)|interpro:IPR006684(4-hydroxybenzoyl-CoA thioesterase)|interpro:IPR008272(4-hydroxybenzoyl-CoA thioesterase, active site)|interpro:IPR029069|rcsb pdb:2PZH|refseq:WP_001203797.1|mint:P94842|dip:DIP-3437N|uniprotkb:P94842(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:sgJWCF0UF8nS9d0T5oQtkUNhbZs85962 rogid:sgJWCF0UF8nS9d0T5oQtkUNhbZs85962 intact-crc:0B5AA68C98A494E8|rigid:znWrfGPpyDXm7UxLkWbOlSD/BSE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25114 uniprotkb:P94844 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 intact:EBI-7497752|intact:MINT-169897|ensemblbacteria:AAD07574 psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:dapb_helpy(display_long)|uniprotkb:dapB(gene name)|psi-mi:dapB(display_short)|uniprotkb:HP_0510(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333313|imex:IM-22256-922 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) mint:P94844|refseq:NP_207307.1|ensemblbacteria:AAD07574(transcript)|ensemblbacteria:HP_0510(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008839"(4-hydroxy-tetrahydrodipicolinate reductase)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|go:"GO:0016726"(oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor)|go:"GO:0019877"(diaminopimelate biosynthetic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR000846(Dihydrodipicolinate reductase)|interpro:IPR022663|interpro:IPR022664|interpro:IPR023940|interpro:IPR036291|refseq:WP_000690507.1|dip:DIP-3440N|uniprotkb:P94844(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 rogid:1EolLbxEd+2rwOC7IkY5mTucYtk85962 intact-crc:09DDC0D2A68E1432|rigid:NtdcaevjrKlXe+E81SfYQ61Y+7I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94846 uniprotkb:O25193 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9268368|ensemblbacteria:AAD07521 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:o25193_helpy(display_long)|uniprotkb:HP_0445(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333331|imex:IM-22256-923 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) ensemblbacteria:AAD07521(transcript)|ensemblbacteria:HP_0445(gene)|uniprotkb:O25193(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:MA06LY47GdRMwnyLuB4R6iCKeyA85962 intact-crc:A4F870FC99C65DAA|rigid:jZPUc0Y+ZoTFXb1rBbsF/YldpO0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94846 uniprotkb:O25831 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9274827|ensemblbacteria:AAD08281 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:o25831_helpy(display_long)|uniprotkb:HP_1233(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333349|imex:IM-22256-924 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) refseq:WP_000301306.1|refseq:NP_208025.1|ensemblbacteria:AAD08281(transcript)|ensemblbacteria:HP_1233(gene)|uniprotkb:O25831(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:Zf3qYqoSVfMqrH/ujfgcfnqWN9885962 intact-crc:488BE6EC01657D32|rigid:UvPtllXwJJH51wVIrxll/tAZmKo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94846 uniprotkb:O25933 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333367|imex:IM-22256-925 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 intact-crc:2821AF576E2C765D|rigid:BoVSn8+9k9hGXIjCAS6mBx0pCPg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94846 uniprotkb:O25983 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333385|imex:IM-22256-926 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:2502F78D4924AC7A|rigid:UEAO1b40XxKbQnm4CI+6/Q/t/DY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94846 uniprotkb:Q9ZKJ9 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333403|imex:IM-22256-927 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:9C0B03A79F4D4EA0|rigid:wIirbnps6mns8LAd/8JvH0i7LEg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94846 uniprotkb:Q9ZKK8 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333421|imex:IM-22256-928 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:4A02890224FDD9A9|rigid:aeA9TcTKDQhrfb08NCrZtPSUyo0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P94846 uniprotkb:Q9ZKL0 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9263715|ensemblbacteria:AAD06502 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:q9zkl0_helpj(display_long)|uniprotkb:jhp_0925(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333439|imex:IM-22256-929 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) ensemblbacteria:AAD06502(transcript)|ensemblbacteria:jhp_0925(gene)|uniprotkb:Q9ZKL0(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:Cx2zMo2YQpU8lrmkD3fHlcXnE6A85963 intact-crc:C4704083007FF029|rigid:QpEFSVJgMbLq6sb6piPxq7n+es4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:P96541 uniprotkb:O26006 intact:EBI-9274920|ensemblbacteria:AAD07529 intact:EBI-9260077|ensemblbacteria:AAD08511 psi-mi:p96541_helpy(display_long)|uniprotkb:HP_0467(locus name) psi-mi:o26006_helpy(display_long)|uniprotkb:HP_1471(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333475|imex:IM-22256-931 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001220151.1|refseq:NP_207265.1|ensemblbacteria:AAD07529(transcript)|ensemblbacteria:HP_0467(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:P96541(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_208262.1|ensemblbacteria:AAD08511(transcript)|ensemblbacteria:HP_1471(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O26006(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:FevFHorps1d9yQVLfiOhySO6CSI85962 rogid:kutCG3yhuSFassWodi2b+4pXCZA85962 intact-crc:D76ACEF5D5AC1FB5|rigid:y8tASNTKQaF32HBQE2z4mLWhwc8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25990 uniprotkb:P96541 intact:EBI-528082|ensemblbacteria:AAD08496 intact:EBI-9274920|ensemblbacteria:AAD07529 psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:p96541_helpy(display_long)|uniprotkb:HP_0467(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333457|imex:IM-22256-930 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) refseq:WP_001220151.1|refseq:NP_207265.1|ensemblbacteria:AAD07529(transcript)|ensemblbacteria:HP_0467(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:P96541(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 rogid:FevFHorps1d9yQVLfiOhySO6CSI85962 intact-crc:7A65C6492D7E929D|rigid:CHjlxf5bxG0L+fZcKvt4IcRyYrA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q09066 uniprotkb:Q09064 intact:EBI-7742750|ensemblbacteria:AAD07131|intact:MINT-177524 intact:EBI-7742396|ensemblbacteria:AAD07133|intact:MINT-177496 psi-mi:ureg_helpy(display_long)|uniprotkb:ureG(gene name)|psi-mi:ureG(display_short)|uniprotkb:HP_0068(locus name) psi-mi:uree_helpy(display_long)|uniprotkb:ureE(gene name)|psi-mi:ureE(display_short)|uniprotkb:HP_0070(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333511|imex:IM-22256-933 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07131(transcript)|ensemblbacteria:HP_0068(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|go:"GO:0042802"(identical protein binding)|interpro:IPR003495("Cobalamin (vitamin B12) biosynthesis CobW-like")|interpro:IPR004400(Urease accessory protein UreG)|interpro:IPR027417|rcsb pdb:4HI0|mint:Q09066|refseq:NP_206868.1|refseq:WP_000238762.1|dip:DIP-3131N|uniprotkb:Q09066(identity) ensemblbacteria:AAD07133(transcript)|ensemblbacteria:HP_0070(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006457"(protein folding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0019627"(urea metabolic process)|go:"GO:0051082"(unfolded protein binding)|go:"GO:0065003"(protein-containing complex assembly)|interpro:IPR004029(UreE urease accessory, N-terminal)|interpro:IPR007864(UreE urease accessory, C-terminal)|interpro:IPR012406(Nickel metallochaperone UreE)|interpro:IPR036118|rcsb pdb:3L9Z|rcsb pdb:3LA0|rcsb pdb:3NY0|rcsb pdb:3TJ8|rcsb pdb:3TJ9|rcsb pdb:3TJA|rcsb pdb:3NXZ|mint:Q09064|refseq:NP_206870.1|refseq:WP_000583097.1|dip:DIP-3132N|uniprotkb:Q09064(identity) psi-mi:"MI:0469"(intact) function:Probably facilitates nickel incorporation|comment:mint comment:mint|function:Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:EFVDzIjW8sgJ3ho4L8rhzoxpZ7Y85962 rogid:TOUdvKFCJlH8BSSmD9WAqX67Ink85962 intact-crc:C399DA03032CF701|rigid:XL/G2aw2qIwS8sey2Ky3O+rbg6c false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q07911 uniprotkb:O25448 intact:EBI-7500186|intact:MINT-162512|ensemblbacteria:AAD07183 intact:EBI-7499990|intact:MINT-160305|ensemblbacteria:AAD07803 psi-mi:flab_helpy(display_long)|uniprotkb:HP_0115(locus name)|uniprotkb:flaB(gene name)|psi-mi:flaB(display_short)|uniprotkb:Flagellin N(gene name synonym) psi-mi:o25448_helpy(display_long)|uniprotkb:HP_0753(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333493|imex:IM-22256-932 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:Q07911|refseq:NP_206915.1|ensemblbacteria:AAD07183(transcript)|ensemblbacteria:HP_0115(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009288"(bacterial-type flagellum)|interpro:IPR001029(Flagellin, C-terminal)|interpro:IPR001492(Flagellin, N-terminal)|interpro:IPR010810(Flagellin hook IN)|interpro:IPR042187|rcsb pdb:6LEA|refseq:WP_000010001.1|dip:DIP-3194N|uniprotkb:Q07911(identity) mint:O25448|refseq:WP_001199081.1|refseq:NP_207546.1|ensemblbacteria:AAD07803(transcript)|ensemblbacteria:HP_0753(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR003713(Flagellar protein FliS)|interpro:IPR036584|rcsb pdb:3IQC|rcsb pdb:3K1I|dip:DIP-3458N|uniprotkb:O25448(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. Important for motility and virulence comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/S6l+aPAsLXbSK5S5THg8nVyCFg85962 rogid:cteyYkuK7MMhuLoDSwYpQRstj3U85962 intact-crc:DC830B2B0B1C7A7A|rigid:JMmD5a/KBzzb5sqwrB8KeOHvNzU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O25008 uniprotkb:Q09065 intact:EBI-7607228|intact:MINT-177413|ensemblbacteria:AAD07288 intact:EBI-7743673|ensemblbacteria:AAD07132|intact:MINT-184930 psi-mi:iscs_helpy(display_long)|uniprotkb:iscS(gene name)|psi-mi:iscS(display_short)|uniprotkb:HP_0220(locus name) psi-mi:uref_helpy(display_long)|uniprotkb:HP_0069(locus name)|uniprotkb:ureF(gene name)|psi-mi:ureF(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333529|imex:IM-22256-934 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941691.1|mint:O25008|refseq:NP_207018.1|ensemblbacteria:AAD07288(transcript)|ensemblbacteria:HP_0220(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006534"(cysteine metabolic process)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0044571"([2Fe-2S] cluster assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR010240(Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017773(Cysteine desulphurase, NifS, proteobacteria)|rcsb pdb:5WT2|rcsb pdb:5WT4|rcsb pdb:5WT5|rcsb pdb:5WT6|rcsb pdb:6KG0|rcsb pdb:6KG1|rcsb pdb:7CET|rcsb pdb:7CEU|dip:DIP-3630N|uniprotkb:O25008(identity) ensemblbacteria:AAD07132(transcript)|ensemblbacteria:HP_0069(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|interpro:IPR002639(Urease accessory protein UreF)|interpro:IPR038277|rcsb pdb:2WGL|rcsb pdb:3CXN|rcsb pdb:3O1Q|rcsb pdb:3SF5|rcsb pdb:4HI0|mint:Q09065|refseq:NP_206869.1|refseq:WP_000357404.1|dip:DIP-3134N|uniprotkb:Q09065(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the removal of elemental sulfur from cysteine to produce alanine function:Probably facilitates nickel incorporation|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YiXCohNQqJR9uWzOaw8ACg2+SmE85962 rogid:k3GQKSjP7d6bt160DmssuuXFrdo85962 intact-crc:AB3ADDC87B38B262|rigid:uUV+VRLQc2WaFtsK4BnSUtVBwtc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q09067 uniprotkb:Q09065 intact:EBI-7718225|ensemblbacteria:AAD07130|intact:MINT-184889 intact:EBI-7743673|ensemblbacteria:AAD07132|intact:MINT-184930 psi-mi:ureh_helpy(display_long)|uniprotkb:HP_0067(locus name)|uniprotkb:ureH(gene name)|psi-mi:ureH(display_short) psi-mi:uref_helpy(display_long)|uniprotkb:HP_0069(locus name)|uniprotkb:ureF(gene name)|psi-mi:ureF(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333547|imex:IM-22256-935 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:Q09067|ensemblbacteria:AAD07130(transcript)|ensemblbacteria:HP_0067(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|interpro:IPR002669(Urease accessory protein UreD)|rcsb pdb:3SF5|rcsb pdb:4HI0|refseq:WP_001099471.1|refseq:NP_206867.1|dip:DIP-3135N|uniprotkb:Q09067(identity) ensemblbacteria:AAD07132(transcript)|ensemblbacteria:HP_0069(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|interpro:IPR002639(Urease accessory protein UreF)|interpro:IPR038277|rcsb pdb:2WGL|rcsb pdb:3CXN|rcsb pdb:3O1Q|rcsb pdb:3SF5|rcsb pdb:4HI0|mint:Q09065|refseq:NP_206869.1|refseq:WP_000357404.1|dip:DIP-3134N|uniprotkb:Q09065(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Probably facilitates nickel incorporation function:Probably facilitates nickel incorporation|comment:mint figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:39uCVh4XZ05LDXWtWk77ZigxqSE85962 rogid:k3GQKSjP7d6bt160DmssuuXFrdo85962 intact-crc:BC2F1DD05DF06D39|rigid:2vZhxVFC7mwGb6Nbi/PfT2Xxa3s false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q09066 uniprotkb:Q09066 intact:EBI-7742750|ensemblbacteria:AAD07131|intact:MINT-177524 intact:EBI-7742750|ensemblbacteria:AAD07131|intact:MINT-177524 psi-mi:ureg_helpy(display_long)|uniprotkb:ureG(gene name)|psi-mi:ureG(display_short)|uniprotkb:HP_0068(locus name) psi-mi:ureg_helpy(display_long)|uniprotkb:ureG(gene name)|psi-mi:ureG(display_short)|uniprotkb:HP_0068(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333565|imex:IM-22256-936 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07131(transcript)|ensemblbacteria:HP_0068(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|go:"GO:0042802"(identical protein binding)|interpro:IPR003495("Cobalamin (vitamin B12) biosynthesis CobW-like")|interpro:IPR004400(Urease accessory protein UreG)|interpro:IPR027417|rcsb pdb:4HI0|mint:Q09066|refseq:NP_206868.1|refseq:WP_000238762.1|dip:DIP-3131N|uniprotkb:Q09066(identity) ensemblbacteria:AAD07131(transcript)|ensemblbacteria:HP_0068(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|go:"GO:0042802"(identical protein binding)|interpro:IPR003495("Cobalamin (vitamin B12) biosynthesis CobW-like")|interpro:IPR004400(Urease accessory protein UreG)|interpro:IPR027417|rcsb pdb:4HI0|mint:Q09066|refseq:NP_206868.1|refseq:WP_000238762.1|dip:DIP-3131N|uniprotkb:Q09066(identity) psi-mi:"MI:0469"(intact) function:Probably facilitates nickel incorporation|comment:mint function:Probably facilitates nickel incorporation|comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:EFVDzIjW8sgJ3ho4L8rhzoxpZ7Y85962 rogid:EFVDzIjW8sgJ3ho4L8rhzoxpZ7Y85962 intact-crc:9EB55D6777499375|rigid:jdQPZyAYDD+qrtpvHpuYsb2o4zM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q09065 uniprotkb:Q09067 intact:EBI-7743673|ensemblbacteria:AAD07132|intact:MINT-184930 intact:EBI-7718225|ensemblbacteria:AAD07130|intact:MINT-184889 psi-mi:uref_helpy(display_long)|uniprotkb:HP_0069(locus name)|uniprotkb:ureF(gene name)|psi-mi:ureF(display_short) psi-mi:ureh_helpy(display_long)|uniprotkb:HP_0067(locus name)|uniprotkb:ureH(gene name)|psi-mi:ureH(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333583|imex:IM-22256-937 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07132(transcript)|ensemblbacteria:HP_0069(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|interpro:IPR002639(Urease accessory protein UreF)|interpro:IPR038277|rcsb pdb:2WGL|rcsb pdb:3CXN|rcsb pdb:3O1Q|rcsb pdb:3SF5|rcsb pdb:4HI0|mint:Q09065|refseq:NP_206869.1|refseq:WP_000357404.1|dip:DIP-3134N|uniprotkb:Q09065(identity) mint:Q09067|ensemblbacteria:AAD07130(transcript)|ensemblbacteria:HP_0067(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016151"(nickel cation binding)|interpro:IPR002669(Urease accessory protein UreD)|rcsb pdb:3SF5|rcsb pdb:4HI0|refseq:WP_001099471.1|refseq:NP_206867.1|dip:DIP-3135N|uniprotkb:Q09067(identity) psi-mi:"MI:0469"(intact) function:Probably facilitates nickel incorporation|comment:mint comment:mint|function:Probably facilitates nickel incorporation figure legend:Table S1|comment:This interaction was detected using both a CEN low-copy and a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:k3GQKSjP7d6bt160DmssuuXFrdo85962 rogid:39uCVh4XZ05LDXWtWk77ZigxqSE85962 intact-crc:52F916E4B73A5688|rigid:2vZhxVFC7mwGb6Nbi/PfT2Xxa3s false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q48260 uniprotkb:O25688 intact:EBI-7674119|ensemblbacteria:AAD07848|intact:MINT-173134|uniprotkb:Q05188 intact:EBI-9275055|ensemblbacteria:AAD08092 psi-mi:moac_helpy(display_long)|uniprotkb:moaC(gene name)|psi-mi:moaC(display_short)|uniprotkb:Molybdenum cofactor biosynthesis protein C(gene name synonym)|uniprotkb:HP_0798(locus name) psi-mi:rbfa_helpy(display_long)|uniprotkb:rbfA(gene name)|psi-mi:rbfA(display_short)|uniprotkb:HP_1047(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333619|imex:IM-22256-939 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07848(transcript)|ensemblbacteria:HP_0798(gene)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0061799"(cyclic pyranopterin monophosphate synthase activity)|interpro:IPR002820(Molybdopterin cofactor biosynthesis MoaC region)|interpro:IPR023045|interpro:IPR036522|mint:Q48260|refseq:NP_207591.1|refseq:WP_001131513.1|dip:DIP-3520N|uniprotkb:Q48260(identity) refseq:WP_000991190.1|interpro:IPR000238(Ribosome-binding factor A)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR020053|interpro:IPR023799|refseq:NP_207838.1|ensemblbacteria:AAD08092(transcript)|ensemblbacteria:HP_1047(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0030490"(maturation of SSU-rRNA)|uniprotkb:O25688(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Together with moaA, is involved in the conversion of a guanosine derivative (5'-GTP) into molybdopterin precursor Z" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4QJXDOE5QbxfqrLCH5/JqQbBDwI85962 rogid:QBhRGW3jODLVFham9IuK/veaOec85962 intact-crc:EE6258A5F0CF082C|rigid:CZ1gUJ1g+XTsSMOdNp4TNaHOQm0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q48260 uniprotkb:O25352 intact:EBI-7674119|ensemblbacteria:AAD07848|intact:MINT-173134|uniprotkb:Q05188 intact:EBI-7523460|intact:MINT-166373|ensemblbacteria:AAD07697 psi-mi:moac_helpy(display_long)|uniprotkb:moaC(gene name)|psi-mi:moaC(display_short)|uniprotkb:Molybdenum cofactor biosynthesis protein C(gene name synonym)|uniprotkb:HP_0798(locus name) psi-mi:o25352_helpy(display_long)|uniprotkb:HP_0635(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333601|imex:IM-22256-938 author score:A - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07848(transcript)|ensemblbacteria:HP_0798(gene)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0061799"(cyclic pyranopterin monophosphate synthase activity)|interpro:IPR002820(Molybdopterin cofactor biosynthesis MoaC region)|interpro:IPR023045|interpro:IPR036522|mint:Q48260|refseq:NP_207591.1|refseq:WP_001131513.1|dip:DIP-3520N|uniprotkb:Q48260(identity) mint:O25352|refseq:WP_000232258.1|refseq:NP_207429.1|ensemblbacteria:AAD07697(transcript)|ensemblbacteria:HP_0635(gene)|dip:DIP-3233N|uniprotkb:O25352(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Together with moaA, is involved in the conversion of a guanosine derivative (5'-GTP) into molybdopterin precursor Z" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4QJXDOE5QbxfqrLCH5/JqQbBDwI85962 rogid:gbjhp7B8nToM+V4yRAesAkIJYuQ85962 intact-crc:F7E6BAA1A2DF7C7E|rigid:qs+WxPKPA7KRz9aKS9E7lBsWU5s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q48262 uniprotkb:O25872 intact:EBI-7680535|ensemblbacteria:AAD08119|intact:MINT-170893 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:nixa_helpy(display_long)|uniprotkb:nixA(gene name)|psi-mi:nixA(display_short)|uniprotkb:HP_1077(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333637|imex:IM-22256-940 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:Q48262|ensemblbacteria:AAD08119(transcript)|ensemblbacteria:HP_1077(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015099"(nickel cation transmembrane transporter activity)|interpro:IPR004688(Nickel/cobalt transporter, high-affinity, bacteria)|interpro:IPR011541(Nickel/cobalt transporter, high-affinity)|refseq:NP_207868.1|refseq:WP_000780430.1|dip:DIP-3647N|uniprotkb:Q48262(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint|function:High-affinity nickel intake protein. Imports nickel ions in an energy-dependent fashion. Necessary for the expression of catalytically active urease - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:89XcWJTRj9h4+fDBXcfjaTKMKOE85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:79E792A24E1E17CE|rigid:mOYpOMbTkGcEgXNGqyq3NwBvPxI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:O24856 uniprotkb:Q9ZN32 intact:EBI-9260140|ensemblbacteria:AAD07084 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o24856_helpy(display_long)|uniprotkb:HP_0007(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333679|imex:IM-22256-942 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07084(transcript)|ensemblbacteria:HP_0007(gene)|uniprotkb:O24856(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:CR7IidW486TFaI+ubrE3l1xDlVU85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:56FC82D25B24D8D4|rigid:brOM4chMAy4xdfIk3l2sZyeYh/A false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24991 uniprotkb:O05731 intact:EBI-7525732|intact:MINT-165883|ensemblbacteria:AAD07263 intact:EBI-7498850|intact:MINT-163231|ensemblbacteria:AAD07937 psi-mi:lpxd_helpy(display_long)|uniprotkb:HP_0196(locus name)|uniprotkb:lpxD(gene name)|psi-mi:lpxD(display_short) psi-mi:y889_helpy(display_long)|uniprotkb:HP_0889(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333661|imex:IM-22256-941 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24991|refseq:WP_000777041.1|refseq:NP_206995.1|ensemblbacteria:AAD07263(transcript)|ensemblbacteria:HP_0196(gene)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016410"(N-acyltransferase activity)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR007691(UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD)|interpro:IPR011004(Trimeric LpxA-like)|interpro:IPR020573|dip:DIP-3246N|uniprotkb:O24991(identity) mint:O05731|refseq:NP_207682.1|refseq:WP_000921458.1|ensemblbacteria:AAD07937(transcript)|ensemblbacteria:HP_0889(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0022857"(transmembrane transporter activity)|go:"GO:0033214"(siderophore-dependent iron import into cell)|interpro:IPR000522(Bacterial transport system permease protein)|interpro:IPR037294|dip:DIP-3475N|uniprotkb:O05731(identity) psi-mi:"MI:0469"(intact) comment:mint function:Part of a binding-protein-dependent transport system for an iron chelatin; probably responsible for the translocation of the substrate across the membrane|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QasheDoo1gV2p/HLISvtoewJ1Fg85962 rogid:5xKhIpKbUORyMaz1VMFoiZcB4TI85962 intact-crc:CAC08BA14C7A2656|rigid:27jEZN/K32qjav0Jj2Lw2OOxQWo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24991 uniprotkb:O24866 intact:EBI-7525732|intact:MINT-165883|ensemblbacteria:AAD07263 intact:EBI-9260226|uniprotkb:Q1PDD4|ensemblbacteria:AAD07094 psi-mi:lpxd_helpy(display_long)|uniprotkb:HP_0196(locus name)|uniprotkb:lpxD(gene name)|psi-mi:lpxD(display_short) psi-mi:lpxe_helpy(display_long)|uniprotkb:lpxE(gene name)|psi-mi:lpxE(display_short)|uniprotkb:C694_00100(locus name)|uniprotkb:HP_0021(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333697|imex:IM-22256-943 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24991|refseq:WP_000777041.1|refseq:NP_206995.1|ensemblbacteria:AAD07263(transcript)|ensemblbacteria:HP_0196(gene)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016410"(N-acyltransferase activity)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR007691(UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD)|interpro:IPR011004(Trimeric LpxA-like)|interpro:IPR020573|dip:DIP-3246N|uniprotkb:O24991(identity) interpro:IPR000326(Phosphatidic acid phosphatase type 2/haloperoxidase)|refseq:NP_206823.1|refseq:WP_000713906.1|interpro:IPR036938|ensemblbacteria:AAD07094(transcript)|ensemblbacteria:HP_0021(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009103"(lipopolysaccharide biosynthetic process)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016791"(phosphatase activity)|go:"GO:0046677"(response to antibiotic)|uniprotkb:O24866(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QasheDoo1gV2p/HLISvtoewJ1Fg85962 rogid:cxFyTOJtu/Z1pwJLZVAhG0udpcQ85962 intact-crc:DFC65B3252637DFE|rigid:8CnpuNv/Ad14idMUc6/zs1TFYYI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24877 uniprotkb:O25423 intact:EBI-7507145|intact:MINT-4059430|ensemblbacteria:AAD07109 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o24877_helpy(display_long)|uniprotkb:HP_0036(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333715|imex:IM-22256-944 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24877|refseq:WP_000468475.1|refseq:NP_206838.1|interpro:IPR001478(PDZ/DHR/GLGF)|ensemblbacteria:AAD07109(transcript)|ensemblbacteria:HP_0036(gene)|interpro:IPR036034|uniprotkb:O24877(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LbR0UzXORN8rWdUVHGjzcUZyXM885962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:3D6263E61B43535A|rigid:1zOi03tAJOif3h9N33WbJC9ubyI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25094 uniprotkb:O24881 intact:EBI-7584994|intact:MINT-171400|ensemblbacteria:AAD07394 intact:EBI-9260295|ensemblbacteria:AAD07120 psi-mi:pseh_helpy(display_long)|uniprotkb:pseH(gene name)|psi-mi:pseH(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein H(gene name synonym)|uniprotkb:HP_0327(locus name) psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333733|imex:IM-22256-945 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25094|refseq:WP_000742697.1|refseq:NP_207125.1|ensemblbacteria:AAD07394(transcript)|ensemblbacteria:HP_0327(gene)|go:"GO:0008080"(N-acetyltransferase activity)|interpro:IPR000182(GCN5-related N-acetyltransferase)|interpro:IPR016181(Acyl-CoA N-acyltransferase)|interpro:IPR020036|rcsb pdb:4RI1|dip:DIP-3555N|uniprotkb:O25094(identity) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uDBKnnI5LujCSAw9Z5WaulboR8Y85962 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 intact-crc:F84EB399B5C82DC1|rigid:HgOWfkZo0Xluve3KJ0HhNvPIQeE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24881 uniprotkb:O25516 intact:EBI-9260295|ensemblbacteria:AAD07120 intact:EBI-9260346|ensemblbacteria:AAD07891 psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:thim_helpy(display_long)|uniprotkb:thiM(gene name)|psi-mi:thiM(display_short)|uniprotkb:4-methyl-5-beta-hydroxyethylthiazole kinase(gene name synonym)|uniprotkb:HP_0845(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333769|imex:IM-22256-947 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) refseq:NP_207638.1|interpro:IPR000417(Hydroxyethylthiazole kinase)|interpro:IPR029056|refseq:WP_015056066.1|ensemblbacteria:AAD07891(transcript)|ensemblbacteria:HP_0845(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004417"(hydroxyethylthiazole kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|uniprotkb:O25516(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 rogid:n+j3gQHERWJWRYiTZXSVhxdo2HE85962 intact-crc:251FC5DE08FAE0D5|rigid:73hT2AGz0RVV8mLT0BTcIRTMZ0g false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25356 uniprotkb:O24881 intact:EBI-7587122|intact:MINT-186968|ensemblbacteria:AAD07701 intact:EBI-9260295|ensemblbacteria:AAD07120 psi-mi:quec_helpy(display_long)|uniprotkb:7-cyano-7-carbaguanine synthase(gene name synonym)|uniprotkb:"PreQ(0) synthase"(gene name synonym)|uniprotkb:Queuosine biosynthesis protein QueC(gene name synonym)|uniprotkb:queC(gene name)|psi-mi:queC(display_short)|uniprotkb:HP_0639(locus name) psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333751|imex:IM-22256-946 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000435648.1|mint:O25356|refseq:NP_207433.1|ensemblbacteria:AAD07701(transcript)|ensemblbacteria:HP_0639(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0016879"(ligase activity, forming carbon-nitrogen bonds)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR018317|dip:DIP-3566N|uniprotkb:O25356(identity) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d/pwh5KxabOdjz5gbirFgcUmD0A85962 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 intact-crc:92DA727609C88943|rigid:6r+iql70dSEXmH3ubeAeN8oYV+8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24883 uniprotkb:O25131 intact:EBI-528018|ensemblbacteria:AAD07110 intact:EBI-9260429|ensemblbacteria:AAD07436 psi-mi:o24883_helpy(display_long)|uniprotkb:HP_0042(locus name) psi-mi:o25131_helpy(display_long)|uniprotkb:HP_0367(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333805|imex:IM-22256-949 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07110(transcript)|ensemblbacteria:HP_0042(gene)|go:"GO:0016021"(integral component of membrane)|interpro:IPR005498(Bacterial conjugation TrbI-like protein)|interpro:IPR042217|rcsb pdb:2BHV|mint:O24883|dip:DIP-3109N|uniprotkb:O24883(identity) refseq:WP_000036594.1|refseq:NP_207165.1|ensemblbacteria:AAD07436(transcript)|ensemblbacteria:HP_0367(gene)|uniprotkb:O25131(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RbyyL+OJeh+4eZ+9aPt6Ui3T8BI85962 rogid:vNcwqrbdOwZJqhozwAb0bBST2t085962 intact-crc:5DB0D0F654258C09|rigid:ZHuzm/oef/oxkjcvtrzKaHr6mcU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24881 uniprotkb:O25641 intact:EBI-9260295|ensemblbacteria:AAD07120 intact:EBI-9260377|uniprotkb:Q7B7Q1|ensemblbacteria:AAD08038 psi-mi:o24881_helpy(display_long)|uniprotkb:HP_0040(locus name) psi-mi:o25641_helpy(display_long)|uniprotkb:HP_0993(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333787|imex:IM-22256-948 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR033645|interpro:IPR010258(Conjugal transfer, TrbG/VirB9/CagX)|interpro:IPR038161|ensemblbacteria:AAD07120(transcript)|ensemblbacteria:HP_0040(gene)|uniprotkb:O24881(identity) refseq:WP_000006537.1|refseq:NP_207784.1|ensemblbacteria:AAD08038(transcript)|ensemblbacteria:HP_0993(gene)|uniprotkb:O25641(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:aHIyHPjBQckqA7bkU8nNFHJFfdw85962 rogid:4xbt/h+Vi75oHyXJG+QFiJlXY7E85962 intact-crc:8CC1AB722A703122|rigid:yKEyrsnpx4gg7tgwxxfzODGQSw8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25495 uniprotkb:O24898 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9260525|ensemblbacteria:AAD07135 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o24898_helpy(display_long)|uniprotkb:HP_0057(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333823|imex:IM-22256-950 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) refseq:WP_000849034.1|refseq:NP_206858.1|ensemblbacteria:AAD07135(transcript)|ensemblbacteria:HP_0057(gene)|uniprotkb:O24898(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:HKKphp9mlUQJvK1X+NDhvFxBgp085962 intact-crc:61EEA08B255FF1C5|rigid:fYY4drQjG+/G6RFajBuv6ohcmNE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZN32 uniprotkb:O24898 intact:EBI-9260158|ensemblbacteria:AAD05612 intact:EBI-9260525|ensemblbacteria:AAD07135 psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:o24898_helpy(display_long)|uniprotkb:HP_0057(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333859|imex:IM-22256-952 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) refseq:WP_000849034.1|refseq:NP_206858.1|ensemblbacteria:AAD07135(transcript)|ensemblbacteria:HP_0057(gene)|uniprotkb:O24898(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 rogid:HKKphp9mlUQJvK1X+NDhvFxBgp085962 intact-crc:1E52BF10D2591A5D|rigid:3sOxXwZMDHmULZrbK09XhCYZlEw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24898 uniprotkb:O26080 intact:EBI-9260525|ensemblbacteria:AAD07135 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:o24898_helpy(display_long)|uniprotkb:HP_0057(locus name) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333841|imex:IM-22256-951 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849034.1|refseq:NP_206858.1|ensemblbacteria:AAD07135(transcript)|ensemblbacteria:HP_0057(gene)|uniprotkb:O24898(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:HKKphp9mlUQJvK1X+NDhvFxBgp085962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:830F55CBA51FCA48|rigid:IKTTN2ET7snx5dHT6gms5UZZYJA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24903 uniprotkb:O25265 intact:EBI-7517824|intact:MINT-171938|ensemblbacteria:AAD07140 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:o24903_helpy(display_long)|uniprotkb:HP_0063(locus name) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333877|imex:IM-22256-953 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24903|refseq:WP_000852747.1|refseq:NP_206863.1|ensemblbacteria:AAD07140(transcript)|ensemblbacteria:HP_0063(gene)|interpro:IPR032869|dip:DIP-3130N|uniprotkb:O24903(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JU4EcErKcrX631/gTvT7Fdmj51M85962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:8C355EFC950C70A7|rigid:bOp5YQbUBMej7KG+9N0J0RviaHQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24903 uniprotkb:O26083 intact:EBI-7517824|intact:MINT-171938|ensemblbacteria:AAD07140 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:o24903_helpy(display_long)|uniprotkb:HP_0063(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333895|imex:IM-22256-954 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24903|refseq:WP_000852747.1|refseq:NP_206863.1|ensemblbacteria:AAD07140(transcript)|ensemblbacteria:HP_0063(gene)|interpro:IPR032869|dip:DIP-3130N|uniprotkb:O24903(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JU4EcErKcrX631/gTvT7Fdmj51M85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:B54D89A5AA00B035|rigid:XdbxxChbCuMtPi259l2cW29ghI8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24864 uniprotkb:O24911 intact:EBI-7735710|ensemblbacteria:AAD07087|intact:MINT-164782 intact:EBI-9260661|ensemblbacteria:AAD07152 psi-mi:chev1_helpy(display_long)|uniprotkb:cheV1(gene name)|psi-mi:cheV1(display_short)|uniprotkb:HP_0019(locus name) psi-mi:o24911_helpy(display_long)|uniprotkb:HP_0082(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333913|imex:IM-22256-955 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24864|ensemblbacteria:AAD07087(transcript)|ensemblbacteria:HP_0019(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|interpro:IPR036061|refseq:WP_000785454.1|refseq:NP_206821.1|dip:DIP-3650N|uniprotkb:O24864(identity) refseq:WP_000843374.1|rcsb pdb:5WBF|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:NP_206882.1|ensemblbacteria:AAD07152(transcript)|ensemblbacteria:HP_0082(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24911(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:XXysqCSx1y7ktkhCQjt+1E1qvwU85962 rogid:xJRAsgOrtjWwJE34gRFc2OSzMVY85962 intact-crc:9BBD94CDFEDAC2FF|rigid:RqzP1rOEZW1isorF6GlAEyL/+cg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24911 uniprotkb:O25649 intact:EBI-9260661|ensemblbacteria:AAD07152 intact:EBI-9260700|ensemblbacteria:AAD08050 psi-mi:o24911_helpy(display_long)|uniprotkb:HP_0082(locus name) psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333931|imex:IM-22256-956 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000843374.1|rcsb pdb:5WBF|interpro:IPR004089(Chemotaxis methyl-accepting receptor, signalling)|refseq:NP_206882.1|ensemblbacteria:AAD07152(transcript)|ensemblbacteria:HP_0082(gene)|go:"GO:0007165"(signal transduction)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24911(identity) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:xJRAsgOrtjWwJE34gRFc2OSzMVY85962 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 intact-crc:D6922E7B7CB16904|rigid:/alZ8g5/7oX5K9ZOehPYk5qlD1k false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24914 uniprotkb:O25872 intact:EBI-7500888|intact:MINT-171024|ensemblbacteria:AAD07159 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o24914_helpy(display_long)|uniprotkb:HP_0087(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333949|imex:IM-22256-957 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24914|refseq:WP_001268661.1|refseq:NP_206887.1|ensemblbacteria:AAD07159(transcript)|ensemblbacteria:HP_0087(gene)|interpro:IPR000064(NLP/P60)|interpro:IPR025606|interpro:IPR026864|interpro:IPR027017|interpro:IPR038765|interpro:IPR039439|dip:DIP-3757N|uniprotkb:O24914(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wIK4OKpuahhqLmHoxtMJo+RjOqs85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:51AD569E3710E47A|rigid:SFgieN5xsgE5Air5JLNQtj1ttwE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25018 uniprotkb:O24915 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9260751|uniprotkb:O32636|ensemblbacteria:AAD07157 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:mqmtn_helpy(display_long)|uniprotkb:mtnN(gene name)|psi-mi:mtnN(display_short)|uniprotkb:5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase(gene name synonym)|uniprotkb:6-amino-6-deoxyfutalosine N-ribosylhydrolase(gene name synonym)|uniprotkb:mtn(gene name synonym)|uniprotkb:HP_0089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333967|imex:IM-22256-958 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_000250146.1|interpro:IPR000845(Nucleoside phosphorylase)|interpro:IPR010049(MTA/SAH nucleosidase)|rcsb pdb:4BMX|rcsb pdb:4BMY|rcsb pdb:4BMZ|rcsb pdb:4BN0|refseq:NP_206889.1|interpro:IPR035994|ensemblbacteria:AAD07157(transcript)|ensemblbacteria:HP_0089(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008782"(adenosylhomocysteine nucleosidase activity)|go:"GO:0008930"(methylthioadenosine nucleosidase activity)|go:"GO:0009164"(nucleoside catabolic process)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0019284"(L-methionine salvage from S-adenosylmethionine)|go:"GO:0019509"(L-methionine salvage from methylthioadenosine)|go:"GO:0102246"(6-amino-6-deoxyfutalosine hydrolase activity)|uniprotkb:O24915(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:MkYwlyrHKG9HLKdIulLNBcQVeQw85962 intact-crc:BFC71C4C9F3CADC2|rigid:vadOc+EXqr08MLLWWE+FN1D8A94 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:O24917 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9260786|ensemblbacteria:AAD07162 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o24917_helpy(display_long)|uniprotkb:HP_0091(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334003|imex:IM-22256-960 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000788527.1|interpro:IPR038365|interpro:IPR007637(Restriction endonuclease, type II, DpmII)|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR021191|refseq:NP_206891.1|ensemblbacteria:AAD07162(transcript)|ensemblbacteria:HP_0091(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0009036"(type II site-specific deoxyribonuclease activity)|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:O24917(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:VVWLmSvNwhsC0G5pTvqDsTcxcqU85962 intact-crc:25260C21E773A537|rigid:bPaehpmOGoHHFMoz6l5pAswn+gI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25186 uniprotkb:O24915 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9260751|uniprotkb:O32636|ensemblbacteria:AAD07157 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:mqmtn_helpy(display_long)|uniprotkb:mtnN(gene name)|psi-mi:mtnN(display_short)|uniprotkb:5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase(gene name synonym)|uniprotkb:6-amino-6-deoxyfutalosine N-ribosylhydrolase(gene name synonym)|uniprotkb:mtn(gene name synonym)|uniprotkb:HP_0089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9333985|imex:IM-22256-959 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) refseq:WP_000250146.1|interpro:IPR000845(Nucleoside phosphorylase)|interpro:IPR010049(MTA/SAH nucleosidase)|rcsb pdb:4BMX|rcsb pdb:4BMY|rcsb pdb:4BMZ|rcsb pdb:4BN0|refseq:NP_206889.1|interpro:IPR035994|ensemblbacteria:AAD07157(transcript)|ensemblbacteria:HP_0089(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008782"(adenosylhomocysteine nucleosidase activity)|go:"GO:0008930"(methylthioadenosine nucleosidase activity)|go:"GO:0009164"(nucleoside catabolic process)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0019284"(L-methionine salvage from S-adenosylmethionine)|go:"GO:0019509"(L-methionine salvage from methylthioadenosine)|go:"GO:0102246"(6-amino-6-deoxyfutalosine hydrolase activity)|uniprotkb:O24915(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:MkYwlyrHKG9HLKdIulLNBcQVeQw85962 intact-crc:F1EAF88E1B5C8801|rigid:mqLeKpvGbMMi3wVpRlroJG6/f2s false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24918 uniprotkb:O25606 intact:EBI-9260804|ensemblbacteria:AAD07163 intact:EBI-9260819|ensemblbacteria:AAD07996 psi-mi:o24918_helpy(display_long)|uniprotkb:HP_0092(locus name) psi-mi:o25606_helpy(display_long)|uniprotkb:HP_0952(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334021|imex:IM-22256-961 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000233875.1|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_206892.1|interpro:IPR029063|ensemblbacteria:AAD07163(transcript)|ensemblbacteria:HP_0092(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|uniprotkb:O24918(identity) refseq:WP_000669256.1|interpro:IPR008136(CinA, C-terminal)|refseq:NP_207744.1|interpro:IPR036653|ensemblbacteria:AAD07996(transcript)|ensemblbacteria:HP_0952(gene)|uniprotkb:O25606(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wwha5GNvSIX5Q97QjPA0nAthydM85962 rogid:s8fk+afTe93cG0B77Mk3AdeOLvk85962 intact-crc:5EE9DA17E72A8A55|rigid:dLp+61i7upLTgXkuMBgW9Mhk4WA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25018 uniprotkb:O24973 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9261041|ensemblbacteria:AAD07234 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:arsr_helpy(display_long)|uniprotkb:arsR(gene name)|psi-mi:arsR(display_short)|uniprotkb:HP_0166(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334057|imex:IM-22256-963 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_000573710.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|refseq:NP_206965.1|interpro:IPR036388|interpro:IPR039420|ensemblbacteria:AAD07234(transcript)|ensemblbacteria:HP_0166(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0001217"(DNA-binding transcription repressor activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|uniprotkb:O24973(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:tD8+rUIsctQLNplR9mZyZVmqRZI85962 intact-crc:2DB641634DC18210|rigid:6hspIOU+Czv1/tvFQ2pLt2GUjwE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24972 uniprotkb:O25756 intact:EBI-9260411|uniprotkb:O24971|ensemblbacteria:AAD07233|ensemblbacteria:AAD07239 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:arss_helpy(display_long)|uniprotkb:arsS(gene name)|psi-mi:arsS(display_short)|uniprotkb:HP_0164/HP_0165(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334039|imex:IM-22256-962 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR036097|interpro:IPR036890|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|ensemblbacteria:AAD07233(transcript)|ensemblbacteria:AAD07239(transcript)|ensemblbacteria:HP_0164(gene)|ensemblbacteria:HP_0165(gene)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O24971(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2020/01/08 rogid:iGm8PnU59Azwe5NrINkshU2pVEA85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:E09C5E8078EE9D88|rigid:tXEil1vQti3DccrwPJbEvaWW5is false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25707 uniprotkb:O24973 intact:EBI-7607688|intact:MINT-162871|ensemblbacteria:AAD08122 intact:EBI-9261041|ensemblbacteria:AAD07234 psi-mi:o25707_helpy(display_long)|uniprotkb:HP_1074(locus name) psi-mi:arsr_helpy(display_long)|uniprotkb:arsR(gene name)|psi-mi:arsR(display_short)|uniprotkb:HP_0166(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334075|imex:IM-22256-964 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862769.1|mint:O25707|refseq:NP_207865.1|ensemblbacteria:AAD08122(transcript)|ensemblbacteria:HP_1074(gene)|dip:DIP-3641N|uniprotkb:O25707(identity) refseq:WP_000573710.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|refseq:NP_206965.1|interpro:IPR036388|interpro:IPR039420|ensemblbacteria:AAD07234(transcript)|ensemblbacteria:HP_0166(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0001217"(DNA-binding transcription repressor activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|uniprotkb:O24973(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:76b3TtdjvRQbevyc2nRzlXtx25Q85962 rogid:tD8+rUIsctQLNplR9mZyZVmqRZI85962 intact-crc:61FA5697568E0264|rigid:NhX+sfW1XfndYRYEWRuAhRa6wrY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25638 uniprotkb:O24975 intact:EBI-7601848|intact:MINT-166704|ensemblbacteria:AAD08035 intact:EBI-9261086|ensemblbacteria:AAD07241 psi-mi:o25638_helpy(display_long)|uniprotkb:HP_0990(locus name) psi-mi:o24975_helpy(display_long)|uniprotkb:HP_0168(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334093|imex:IM-22256-965 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25638|ensemblbacteria:AAD08035(transcript)|ensemblbacteria:HP_0990(gene)|dip:DIP-3613N|uniprotkb:O25638(identity) refseq:WP_001127819.1|interpro:IPR011990(Tetratricopeptide-like helical)|refseq:NP_206967.1|ensemblbacteria:AAD07241(transcript)|ensemblbacteria:HP_0168(gene)|uniprotkb:O24975(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rVJ82mdECNMncWYnxmuqK6CBT7w85962 rogid:7MLF9KFiu1msXkJDJ6ahcEFJhy885962 intact-crc:5814F9D45C8713DE|rigid:3NJJ1Sj4/lyJyh18jVoDfYP1ntk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25008 uniprotkb:O26062 intact:EBI-7607228|intact:MINT-177413|ensemblbacteria:AAD07288 intact:EBI-9261205|ensemblbacteria:AAD08578 psi-mi:iscs_helpy(display_long)|uniprotkb:iscS(gene name)|psi-mi:iscS(display_short)|uniprotkb:HP_0220(locus name) psi-mi:o26062_helpy(display_long)|uniprotkb:HP_1536(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334111|imex:IM-22256-966 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941691.1|mint:O25008|refseq:NP_207018.1|ensemblbacteria:AAD07288(transcript)|ensemblbacteria:HP_0220(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006534"(cysteine metabolic process)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0044571"([2Fe-2S] cluster assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR010240(Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017773(Cysteine desulphurase, NifS, proteobacteria)|rcsb pdb:5WT2|rcsb pdb:5WT4|rcsb pdb:5WT5|rcsb pdb:5WT6|rcsb pdb:6KG0|rcsb pdb:6KG1|rcsb pdb:7CET|rcsb pdb:7CEU|dip:DIP-3630N|uniprotkb:O25008(identity) ensemblbacteria:AAD08578(transcript)|ensemblbacteria:HP_1536(gene)|uniprotkb:O26062(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the removal of elemental sulfur from cysteine to produce alanine - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YiXCohNQqJR9uWzOaw8ACg2+SmE85962 rogid:VBlCZMrKb5V4eYQSuSaEWJlvMYE85962 intact-crc:AB9CCC519B957B33|rigid:Z5/Di7jlZGQwNmpvzA+3EmGQwTQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25756 uniprotkb:O25040 intact:EBI-9261023|ensemblbacteria:AAD08177 intact:EBI-9261425|ensemblbacteria:AAD07328 psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:o25040_helpy(display_long)|uniprotkb:HP_0260(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334129|imex:IM-22256-967 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) refseq:WP_000549706.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002295(N6 adenine-specific DNA methyltransferase, D21 class)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_207058.1|interpro:IPR029063|ensemblbacteria:AAD07328(transcript)|ensemblbacteria:HP_0260(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|uniprotkb:O25040(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 rogid:bpaqKMzy9+r4XtpfsARFIQFH0U085962 intact-crc:E0542E50C6EE7D86|rigid:SfAHJh8uptW60LkEkS+nPkrM1+E false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25940 uniprotkb:O25040 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9261425|ensemblbacteria:AAD07328 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25040_helpy(display_long)|uniprotkb:HP_0260(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334147|imex:IM-22256-968 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_000549706.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002295(N6 adenine-specific DNA methyltransferase, D21 class)|interpro:IPR002941(DNA methylase N-4/N-6)|refseq:NP_207058.1|interpro:IPR029063|ensemblbacteria:AAD07328(transcript)|ensemblbacteria:HP_0260(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|uniprotkb:O25040(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:bpaqKMzy9+r4XtpfsARFIQFH0U085962 intact-crc:618BA3F333F3E698|rigid:Wj3+qI7SROnXCaOK9IO9fuPdY64 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25053 uniprotkb:O26092 intact:EBI-7540736|intact:MINT-175004|ensemblbacteria:AAD07349 intact:EBI-7497964|intact:MINT-175939|ensemblbacteria:AAD08609 psi-mi:o25053_helpy(display_long)|uniprotkb:HP_0276(locus name) psi-mi:o26092_helpy(display_long)|uniprotkb:HP_1572(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334183|imex:IM-22256-970 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25053|refseq:WP_001155742.1|refseq:NP_207074.1|ensemblbacteria:AAD07349(transcript)|ensemblbacteria:HP_0276(gene)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|go:"GO:0000162"(tryptophan biosynthetic process)|dip:DIP-3325N|uniprotkb:O25053(identity) mint:O26092|refseq:WP_000044457.1|refseq:NP_208363.1|ensemblbacteria:AAD08609(transcript)|ensemblbacteria:HP_1572(gene)|interpro:IPR008258(Lytic transglycosylase-like, catalytic)|interpro:IPR018392|interpro:IPR023346|interpro:IPR036779|dip:DIP-3299N|uniprotkb:O26092(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DsRzABLIdfqyaWU6ai6Ur5GhiG485962 rogid:wrDDc9xcztpd6MTxd/CD1masB7o85962 intact-crc:4B0EE5969E868103|rigid:2akYYJLOel3tJyTbvlOGXEQzjFw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25047 uniprotkb:O25186 intact:EBI-7598493|intact:MINT-188290|ensemblbacteria:AAD07344 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 psi-mi:o25047_helpy(display_long)|uniprotkb:HP_0268(locus name) psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334165|imex:IM-22256-969 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25047|refseq:WP_000780038.1|refseq:NP_207066.1|ensemblbacteria:AAD07344(transcript)|ensemblbacteria:HP_0268(gene)|interpro:IPR040748|rcsb pdb:2MX0|dip:DIP-3592N|uniprotkb:O25047(identity) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jrVPbj03pIB7/zHcreky8QU8Bak85962 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 intact-crc:05EC9985B8EDB312|rigid:dQIa8F33lRQ2BAydDV4Bp2LqqP8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25053 uniprotkb:P56132 intact:EBI-7540736|intact:MINT-175004|ensemblbacteria:AAD07349 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 psi-mi:o25053_helpy(display_long)|uniprotkb:HP_0276(locus name) psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334201|imex:IM-22256-971 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25053|refseq:WP_001155742.1|refseq:NP_207074.1|ensemblbacteria:AAD07349(transcript)|ensemblbacteria:HP_0276(gene)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|go:"GO:0000162"(tryptophan biosynthetic process)|dip:DIP-3325N|uniprotkb:O25053(identity) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DsRzABLIdfqyaWU6ai6Ur5GhiG485962 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 intact-crc:C0060A7A539A9E08|rigid:mPQtojT9qv0l4/tiNeN+6Obn5Dw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25057 uniprotkb:O25872 intact:EBI-7616269|intact:MINT-185164|ensemblbacteria:AAD07343 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o25057_helpy(display_long)|uniprotkb:HP_0280(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334219|imex:IM-22256-972 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25057|refseq:WP_000221211.1|refseq:NP_207078.1|ensemblbacteria:AAD07343(transcript)|ensemblbacteria:HP_0280(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016746"(acyltransferase activity)|interpro:IPR004960(Bacterial lipid A biosynthesis acyltransferase)|dip:DIP-3692N|uniprotkb:O25057(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yexNbNeceB9jT6t+XmIJP+BuaIA85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:0D435218CC745231|rigid:yEacv8Bdy8lmseaF2CHcpWKy518 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25057 uniprotkb:Q9ZKW4 intact:EBI-7616269|intact:MINT-185164|ensemblbacteria:AAD07343 intact:EBI-9261600|ensemblbacteria:AAD06393 psi-mi:o25057_helpy(display_long)|uniprotkb:HP_0280(locus name) psi-mi:q9zkw4_helpj(display_long)|uniprotkb:jhp_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334237|imex:IM-22256-973 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25057|refseq:WP_000221211.1|refseq:NP_207078.1|ensemblbacteria:AAD07343(transcript)|ensemblbacteria:HP_0280(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016746"(acyltransferase activity)|interpro:IPR004960(Bacterial lipid A biosynthesis acyltransferase)|dip:DIP-3692N|uniprotkb:O25057(identity) interpro:IPR002495(Glycosyl transferase, family 8)|interpro:IPR029044|ensemblbacteria:AAD06393(transcript)|ensemblbacteria:jhp_0820(gene)|go:"GO:0016757"(glycosyltransferase activity)|uniprotkb:Q9ZKW4(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yexNbNeceB9jT6t+XmIJP+BuaIA85962 rogid:zzpEOeYpHTao8r++Ew1T+LCI5jA85963 intact-crc:C081529541768CF5|rigid:3osGigDGtgyMnnIMd4fuYMZxBCA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25064 uniprotkb:O25756 intact:EBI-7688560|ensemblbacteria:AAD07361|intact:MINT-166288 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:o25064_helpy(display_long)|uniprotkb:HP_0291(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334255|imex:IM-22256-974 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001171376.1|ensemblbacteria:AAD07361(transcript)|ensemblbacteria:HP_0291(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR002701(Chorismate mutase)|interpro:IPR036263|interpro:IPR036979|rcsb pdb:6AL9|mint:O25064|refseq:NP_207089.1|dip:DIP-3330N|uniprotkb:O25064(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tc+Vvni8F0UgEOiG+5yP/UkCUyg85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:D5516DED02CDC042|rigid:7AZrrfnb3tcdvMXyMMtYrYRhL38 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25064 uniprotkb:O25775 intact:EBI-7688560|ensemblbacteria:AAD07361|intact:MINT-166288 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 psi-mi:o25064_helpy(display_long)|uniprotkb:HP_0291(locus name) psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334273|imex:IM-22256-975 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001171376.1|ensemblbacteria:AAD07361(transcript)|ensemblbacteria:HP_0291(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR002701(Chorismate mutase)|interpro:IPR036263|interpro:IPR036979|rcsb pdb:6AL9|mint:O25064|refseq:NP_207089.1|dip:DIP-3330N|uniprotkb:O25064(identity) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) psi-mi:"MI:0469"(intact) comment:mint function:May have metalloprotease activity|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tc+Vvni8F0UgEOiG+5yP/UkCUyg85962 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 intact-crc:5183334820499C2A|rigid:f22uA8pFaltgnPIhCo4ZDRPPfr8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56120 uniprotkb:O25064 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-7688560|ensemblbacteria:AAD07361|intact:MINT-166288 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:o25064_helpy(display_long)|uniprotkb:HP_0291(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334291|imex:IM-22256-976 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) refseq:WP_001171376.1|ensemblbacteria:AAD07361(transcript)|ensemblbacteria:HP_0291(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR002701(Chorismate mutase)|interpro:IPR036263|interpro:IPR036979|rcsb pdb:6AL9|mint:O25064|refseq:NP_207089.1|dip:DIP-3330N|uniprotkb:O25064(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:tc+Vvni8F0UgEOiG+5yP/UkCUyg85962 intact-crc:4EEDFD40A674323D|rigid:lsDQconPTBv4TjjgrOnx54kGvzI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P94845 uniprotkb:O25064 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-7688560|ensemblbacteria:AAD07361|intact:MINT-166288 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:o25064_helpy(display_long)|uniprotkb:HP_0291(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334309|imex:IM-22256-977 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) refseq:WP_001171376.1|ensemblbacteria:AAD07361(transcript)|ensemblbacteria:HP_0291(gene)|go:"GO:0004106"(chorismate mutase activity)|go:"GO:0046417"(chorismate metabolic process)|interpro:IPR002701(Chorismate mutase)|interpro:IPR036263|interpro:IPR036979|rcsb pdb:6AL9|mint:O25064|refseq:NP_207089.1|dip:DIP-3330N|uniprotkb:O25064(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:tc+Vvni8F0UgEOiG+5yP/UkCUyg85962 intact-crc:DEDA943832FC802A|rigid:fPv9PPtLyCUT8SL+C6NOJVCIbfk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25067 uniprotkb:O25790 intact:EBI-7494864|uniprotkb:O32644|intact:MINT-171290|ensemblbacteria:AAD07363 intact:EBI-9261675|ensemblbacteria:AAD08226 psi-mi:amie_helpy(display_long)|uniprotkb:amiE(gene name)|psi-mi:amiE(display_short)|uniprotkb:HP_0294(locus name)|uniprotkb:Acylamide amidohydrolase(gene name synonym) psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334327|imex:IM-22256-978 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25067|interpro:IPR036526|refseq:NP_207092.1|interpro:IPR023719|refseq:WP_001215729.1|interpro:IPR003010(Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase)|ensemblbacteria:AAD07363(transcript)|ensemblbacteria:HP_0294(gene)|go:"GO:0004040"(amidase activity)|go:"GO:0006807"(nitrogen compound metabolic process)|go:"GO:0016811"("hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides")|go:"GO:0043864"(indoleacetamide hydrolase activity)|uniprotkb:O25067(identity) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia. Hydrolyzes propionamide, acetamide and acrylamide, but has no activity with formamide or urea. The natural substrates of amiE in its gastric environment are not known. Probably functions to ensure nitrogen supply to the bacteria|function:Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates. The highest level of acyl transfer activity is observed with acetamide - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ymqUD2zW+SY6GnnQwH6NQzHbSA485962 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 intact-crc:78D91EAB8FAE00BA|rigid:h6Sf02uAB+/KZqEaNG2wRoE0hYE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25068 uniprotkb:O24970 intact:EBI-7495585|intact:MINT-164466|ensemblbacteria:AAD07364 intact:EBI-7605642|intact:MINT-183344|ensemblbacteria:AAD07231 psi-mi:o25068_helpy(display_long)|uniprotkb:HP_0295(locus name) psi-mi:y162_helpy(display_long)|uniprotkb:HP_0162(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334345|imex:IM-22256-979 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25068|refseq:NP_207093.1|refseq:WP_001266636.1|ensemblbacteria:AAD07364(transcript)|ensemblbacteria:HP_0295(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|interpro:IPR001029(Flagellin, C-terminal)|dip:DIP-3204N|uniprotkb:O25068(identity) refseq:WP_000532084.1|mint:O24970|refseq:NP_206961.1|ensemblbacteria:AAD07231(transcript)|ensemblbacteria:HP_0162(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|rcsb pdb:1MHF|rcsb pdb:1MW7|dip:DIP-3628N|uniprotkb:O24970(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YP2K7SUI3VzdcNHI+BaodN9bTkA85962 rogid:LUGGL2bkvaETPDkdhcm+8A+3STQ85962 intact-crc:601038B1B6B06F23|rigid:tONSQve3hD/0ulXRfVVRra/bt5Q false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25068 uniprotkb:O25441 intact:EBI-7495585|intact:MINT-164466|ensemblbacteria:AAD07364 intact:EBI-7534291|intact:MINT-165354|ensemblbacteria:AAD07795 psi-mi:o25068_helpy(display_long)|uniprotkb:HP_0295(locus name) psi-mi:y745_helpy(display_long)|uniprotkb:HP_0745(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334363|imex:IM-22256-980 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25068|refseq:NP_207093.1|refseq:WP_001266636.1|ensemblbacteria:AAD07364(transcript)|ensemblbacteria:HP_0295(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|interpro:IPR001029(Flagellin, C-terminal)|dip:DIP-3204N|uniprotkb:O25068(identity) mint:O25441|refseq:WP_001174316.1|refseq:NP_207538.1|ensemblbacteria:AAD07795(transcript)|ensemblbacteria:HP_0745(gene)|go:"GO:0000455"(enzyme-directed rRNA pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR002942(RNA-binding S4)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR006225(Pseudouridine synthase, RluD)|interpro:IPR020103|interpro:IPR036986|dip:DIP-3289N|uniprotkb:O25441(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:YP2K7SUI3VzdcNHI+BaodN9bTkA85962 rogid:gP9/LoKDS925ltVihbwr3UWq/PA85962 intact-crc:28CC211BE7F35EC9|rigid:VvBlFvyJaxhmr+QkIiDJ1X0dF10 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25074 uniprotkb:O25664 intact:EBI-7495922|intact:MINT-165011|ensemblbacteria:AAD07372 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:obg_helpy(display_long)|uniprotkb:obg(gene name)|psi-mi:obg(display_short)|uniprotkb:GTP-binding protein Obg(gene name synonym)|uniprotkb:HP_0303(locus name) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334381|imex:IM-22256-981 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25074|refseq:NP_207101.1|ensemblbacteria:AAD07372(transcript)|ensemblbacteria:HP_0303(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0042254"(ribosome biogenesis)|interpro:IPR006073(GTP1/OBG)|interpro:IPR006074(GTP1/OBG, conserved site)|interpro:IPR006169(GTP1/OBG subdomain)|interpro:IPR014100(GTP-binding protein Obg/CgtA)|interpro:IPR027417|interpro:IPR031167|interpro:IPR035101|interpro:IPR036726|refseq:WP_000497238.1|dip:DIP-3205N|uniprotkb:O25074(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Z4ScsfG28RbDq3tD4CBcIp43yKU85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:036A576F1E811D08|rigid:mrvpHpIa49+fWPfc3LcxeKg0mfQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25074 uniprotkb:P56120 intact:EBI-7495922|intact:MINT-165011|ensemblbacteria:AAD07372 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 psi-mi:obg_helpy(display_long)|uniprotkb:obg(gene name)|psi-mi:obg(display_short)|uniprotkb:GTP-binding protein Obg(gene name synonym)|uniprotkb:HP_0303(locus name) psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334399|imex:IM-22256-982 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25074|refseq:NP_207101.1|ensemblbacteria:AAD07372(transcript)|ensemblbacteria:HP_0303(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0042254"(ribosome biogenesis)|interpro:IPR006073(GTP1/OBG)|interpro:IPR006074(GTP1/OBG, conserved site)|interpro:IPR006169(GTP1/OBG subdomain)|interpro:IPR014100(GTP-binding protein Obg/CgtA)|interpro:IPR027417|interpro:IPR031167|interpro:IPR035101|interpro:IPR036726|refseq:WP_000497238.1|dip:DIP-3205N|uniprotkb:O25074(identity) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Z4ScsfG28RbDq3tD4CBcIp43yKU85962 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 intact-crc:8823DB0368E271F3|rigid:fu7I5OS3mf2Hm34eJBqxdCSf88k false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26006 uniprotkb:O25077 intact:EBI-9260077|ensemblbacteria:AAD08511 intact:EBI-9261801|ensemblbacteria:AAD07382 psi-mi:o26006_helpy(display_long)|uniprotkb:HP_1471(locus name) psi-mi:o25077_helpy(display_long)|uniprotkb:HP_0307(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334435|imex:IM-22256-984 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_208262.1|ensemblbacteria:AAD08511(transcript)|ensemblbacteria:HP_1471(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O26006(identity) refseq:WP_001010071.1|refseq:NP_207105.1|interpro:IPR032820|ensemblbacteria:AAD07382(transcript)|ensemblbacteria:HP_0307(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25077(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kutCG3yhuSFassWodi2b+4pXCZA85962 rogid:LApTIbHHEgsZvM2J45XTrmlTy5Q85962 intact-crc:2580428691CA3BC9|rigid:S865Pduuk50o+cF5l/iOAc/+wJE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25872 uniprotkb:O25077 intact:EBI-9260733|ensemblbacteria:AAD08330 intact:EBI-9261801|ensemblbacteria:AAD07382 psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:o25077_helpy(display_long)|uniprotkb:HP_0307(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334417|imex:IM-22256-983 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) refseq:WP_001010071.1|refseq:NP_207105.1|interpro:IPR032820|ensemblbacteria:AAD07382(transcript)|ensemblbacteria:HP_0307(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25077(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 rogid:LApTIbHHEgsZvM2J45XTrmlTy5Q85962 intact-crc:30DF1E9F5158D5AC|rigid:IXgM31+Me9NkM636OJ26qXSOlLQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25077 uniprotkb:Q9ZKW4 intact:EBI-9261801|ensemblbacteria:AAD07382 intact:EBI-9261600|ensemblbacteria:AAD06393 psi-mi:o25077_helpy(display_long)|uniprotkb:HP_0307(locus name) psi-mi:q9zkw4_helpj(display_long)|uniprotkb:jhp_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334453|imex:IM-22256-985 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001010071.1|refseq:NP_207105.1|interpro:IPR032820|ensemblbacteria:AAD07382(transcript)|ensemblbacteria:HP_0307(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25077(identity) interpro:IPR002495(Glycosyl transferase, family 8)|interpro:IPR029044|ensemblbacteria:AAD06393(transcript)|ensemblbacteria:jhp_0820(gene)|go:"GO:0016757"(glycosyltransferase activity)|uniprotkb:Q9ZKW4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:LApTIbHHEgsZvM2J45XTrmlTy5Q85962 rogid:zzpEOeYpHTao8r++Ew1T+LCI5jA85963 intact-crc:FD1D1E12DC5A0B68|rigid:QxvgvJtPZF9Nr9ldeDkuI1xdB/o false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25099 uniprotkb:O25099 intact:EBI-7562109|intact:MINT-161035|ensemblbacteria:AAD07401 intact:EBI-7562109|intact:MINT-161035|ensemblbacteria:AAD07401 psi-mi:mine_helpy(display_long)|uniprotkb:minE(gene name)|psi-mi:minE(display_short)|uniprotkb:HP_0332(locus name) psi-mi:mine_helpy(display_long)|uniprotkb:minE(gene name)|psi-mi:minE(display_short)|uniprotkb:HP_0332(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334489|imex:IM-22256-987 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25099|refseq:WP_000051415.1|refseq:NP_207130.1|ensemblbacteria:AAD07401(transcript)|ensemblbacteria:HP_0332(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0032955"(regulation of division septum assembly)|go:"GO:0051301"(cell division)|interpro:IPR005527(Septum formation topological specificity factor MinE)|interpro:IPR036707|rcsb pdb:3KU7|rcsb pdb:3MCD|dip:DIP-3672N|uniprotkb:O25099(identity) mint:O25099|refseq:WP_000051415.1|refseq:NP_207130.1|ensemblbacteria:AAD07401(transcript)|ensemblbacteria:HP_0332(gene)|go:"GO:0007049"(cell cycle)|go:"GO:0032955"(regulation of division septum assembly)|go:"GO:0051301"(cell division)|interpro:IPR005527(Septum formation topological specificity factor MinE)|interpro:IPR036707|rcsb pdb:3KU7|rcsb pdb:3MCD|dip:DIP-3672N|uniprotkb:O25099(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Prevents the cell division inhibition by proteins minC and minD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell comment:mint|function:Prevents the cell division inhibition by proteins minC and minD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MR6BnOq7iBngB05n4bLzChbXLtU85962 rogid:MR6BnOq7iBngB05n4bLzChbXLtU85962 intact-crc:FB2627775C2C4E7E|rigid:SN9UuRz/xjl064xOqjjNPHeWweo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25105 uniprotkb:O25872 intact:EBI-7503644|intact:MINT-180968|ensemblbacteria:AAD07410 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o25105_helpy(display_long)|uniprotkb:HP_0338(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334507|imex:IM-22256-988 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25105|refseq:WP_000032376.1|refseq:NP_207136.1|ensemblbacteria:AAD07410(transcript)|ensemblbacteria:HP_0338(gene)|go:"GO:0016021"(integral component of membrane)|dip:DIP-3338N|uniprotkb:O25105(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oUNT8jLP6OcR5ik9/ILB8JcUTxY85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:D01FA4EF57F215AA|rigid:CdUqc5iJlxMZRYDbidoarcC6ZnQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25092 uniprotkb:O25038 intact:EBI-7493789|intact:MINT-161216|ensemblbacteria:AAD07392 intact:EBI-9261404|ensemblbacteria:AAD07325 psi-mi:flgh_helpy(display_long)|uniprotkb:flgH(gene name)|psi-mi:flgH(display_short)|uniprotkb:HP_0325(locus name)|uniprotkb:Basal body L-ring protein(gene name synonym) psi-mi:o25038_helpy(display_long)|uniprotkb:HP_0257(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334471|imex:IM-22256-986 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25092|refseq:NP_207123.1|refseq:WP_000709989.1|ensemblbacteria:AAD07392(transcript)|ensemblbacteria:HP_0325(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0009279"(cell outer membrane)|go:"GO:0009427"(bacterial-type flagellum basal body, distal rod, L ring)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR000527(Flagellar L-ring protein)|dip:DIP-3206N|uniprotkb:O25092(identity) refseq:WP_001226637.1|interpro:IPR006668(MgtE intracellular region)|refseq:NP_207055.1|interpro:IPR038076|ensemblbacteria:AAD07325(transcript)|ensemblbacteria:HP_0257(gene)|uniprotkb:O25038(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MrKUGtUwSfmxEg4i9HrJydiu+HU85962 rogid:uVXjhpyFxXT8EXwW+LC/asYO5E885962 intact-crc:AFD5DB5D806415EC|rigid:8QDU/tcnxoM/NdCvprJc4E/O8Lc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25114 uniprotkb:O06914 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334525|imex:IM-22256-989 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:29F4B1E498757F8E|rigid:f0oYLkCsYM88gGSNTgRGy702k9o false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25114 uniprotkb:O25669 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 intact:EBI-6415953|ensemblbacteria:AAD08067 psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334561|imex:IM-22256-991 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 intact-crc:04E677E457612BA7|rigid:CizYyhX/JqHRwyrZhdhQy5IOCFk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25310 uniprotkb:O25114 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334543|imex:IM-22256-990 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 intact-crc:E8C2CE4F4251722C|rigid:qB3v6ew+PDORj20oqOT5nAP5ZxA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25940 uniprotkb:O25115 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9262139|ensemblbacteria:AAD07405 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25115_helpy(display_long)|uniprotkb:HP_0348(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334597|imex:IM-22256-993 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_000810700.1|interpro:IPR038763|interpro:IPR001667(Phosphoesterase, RecJ-like)|interpro:IPR003156(Phosphoesterase, DHHA1)|interpro:IPR004610(Bacterial RecJ exonuclease)|refseq:NP_207146.1|interpro:IPR041122|ensemblbacteria:AAD07405(transcript)|ensemblbacteria:HP_0348(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008409"(5'-3' exonuclease activity)|uniprotkb:O25115(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:UBfowhKiIHxI+JItQgqYa6/EDqM85962 intact-crc:06249E6D4BBEC8E0|rigid:rw+6HA9mLXSbrmJPJYRKYjbirLs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25113 uniprotkb:O25121 intact:EBI-7633054|ensemblbacteria:AAD07417|intact:MINT-187451 intact:EBI-7514472|intact:MINT-163092|ensemblbacteria:AAD07422 psi-mi:o25113_helpy(display_long)|uniprotkb:HP_0346(locus name) psi-mi:dxs_helpy(display_long)|uniprotkb:dxs(gene name)|psi-mi:dxs(display_short)|uniprotkb:HP_0354(locus name)|uniprotkb:1-deoxyxylulose-5-phosphate synthase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334615|imex:IM-22256-994 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07417(transcript)|ensemblbacteria:HP_0346(gene)|mint:O25113|refseq:WP_010875469.1|dip:DIP-3740N|uniprotkb:O25113(identity) refseq:WP_000602987.1|mint:O25121|refseq:NP_207152.1|ensemblbacteria:AAD07422(transcript)|ensemblbacteria:HP_0354(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005829"(cytosol)|go:"GO:0008661"(1-deoxy-D-xylulose-5-phosphate synthase activity)|go:"GO:0009228"(thiamine biosynthetic process)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0016744"(transketolase or transaldolase activity)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0030976"(thiamine pyrophosphate binding)|go:"GO:0052865"(1-deoxy-D-xylulose 5-phosphate biosynthetic process)|interpro:IPR005474(Transketolase, N-terminal)|interpro:IPR005475(Transketolase, central region)|interpro:IPR005477(Deoxyxylulose-5-phosphate synthase)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR020826|interpro:IPR029061|interpro:IPR033248|dip:DIP-3091N|uniprotkb:O25121(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3tDHTPf4i6qTBg5T+5R4VwGUUfo85962 rogid:g2XL4afy1FuILnberhjoAibXtlo85962 intact-crc:A385DEABA3CCE456|rigid:ElBd3V/MAg2CiH4aNZNGxyspmPI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25114 uniprotkb:O25852 intact:EBI-7497815|intact:MINT-169833|ensemblbacteria:AAD07404 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 psi-mi:y347_helpy(display_long)|uniprotkb:HP_0347(locus name)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:RNA pseudouridylate synthase(gene name synonym) psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334579|imex:IM-22256-992 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25114|refseq:NP_207145.1|ensemblbacteria:AAD07404(transcript)|ensemblbacteria:HP_0347(gene)|go:"GO:0001522"(pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:WP_001117124.1|dip:DIP-3403N|uniprotkb:O25114(identity) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rh8AW2tBpBuveed+Hv4WNa03Pkw85962 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 intact-crc:E56643F5D38C5216|rigid:bXmZE3y8bWvgg2uBZo6q7ggN+lc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25122 uniprotkb:O25417 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-9262268|ensemblbacteria:AAD07765 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:o25417_helpy(display_long)|uniprotkb:HP_0715(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334651|imex:IM-22256-996 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) refseq:WP_000353241.1|interpro:IPR030921|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:NP_207509.1|ensemblbacteria:AAD07765(transcript)|ensemblbacteria:HP_0715(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015803"(branched-chain amino acid transport)|go:"GO:0015807"(L-amino acid transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|uniprotkb:O25417(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:EtbfiHVp0ygQ/Yc+5Yl7Y4UZha485962 intact-crc:13CBA5E13E52E7D3|rigid:1z0Uyzc0c6mpRc6DICBp3QfctMg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25122 uniprotkb:P56042 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-9262301|ensemblbacteria:AAD08335 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:rl17_helpy(display_long)|uniprotkb:rplQ(gene name)|psi-mi:rplQ(display_short)|uniprotkb:HP_1292(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334669|imex:IM-22256-997 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) refseq:WP_001216119.1|interpro:IPR000456(Ribosomal protein L17)|refseq:NP_208084.1|interpro:IPR036373|ensemblbacteria:AAD08335(transcript)|ensemblbacteria:HP_1292(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56042(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:ooZamXxqutJrfs+ncATbxae1dRY85962 intact-crc:88F8FA6B2FB3E20E|rigid:6XJqy4CuRwcXZXRtyyjC73pXigQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25186 uniprotkb:O25122 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334633|imex:IM-22256-995 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 intact-crc:9911CEDF931A5939|rigid:fDRM2XICS6OliSiVTBsfvsPwJR8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25122 uniprotkb:Q9ZKJ1 intact:EBI-7502016|intact:MINT-164292|ensemblbacteria:AAD07423 intact:EBI-9262335|ensemblbacteria:AAD06522 psi-mi:lepa_helpy(display_long)|uniprotkb:Ribosomal back-translocase LepA(gene name synonym)|uniprotkb:HP_0355(locus name)|uniprotkb:lepA(gene name)|psi-mi:lepA(display_short) psi-mi:q9zkj1_helpj(display_long)|uniprotkb:jhp_0944(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334687|imex:IM-22256-998 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000849893.1|mint:O25122|refseq:NP_207153.1|ensemblbacteria:AAD07423(transcript)|ensemblbacteria:HP_0355(gene)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0043022"(ribosome binding)|go:"GO:0045727"(positive regulation of translation)|interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006297(GTP-binding protein LepA)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR013842(GTP-binding protein LepA, C-terminal)|interpro:IPR027417|interpro:IPR031157|interpro:IPR035647|interpro:IPR035654|interpro:IPR038363|dip:DIP-3049N|uniprotkb:O25122(identity) ensemblbacteria:AAD06522(transcript)|ensemblbacteria:jhp_0944(gene)|uniprotkb:Q9ZKJ1(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:A140M7XdoCIWOk0WkNSaj9wXgPQ85962 rogid:1R4utf6FSlcyXPNx5xhZw0DvxCU85963 intact-crc:2E579D5E6694928B|rigid:ZZDdzTkENZNfvbHemYmoNTQZBgs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZKX1 uniprotkb:O25126 intact:EBI-9262359|ensemblbacteria:AAD06383 intact:EBI-9262356|ensemblbacteria:AAD07439 psi-mi:q9zkx1_helpj(display_long)|uniprotkb:jhp_0813(locus name) psi-mi:o25126_helpy(display_long)|uniprotkb:HP_0359(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334705|imex:IM-22256-999 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR021907|ensemblbacteria:AAD06383(transcript)|ensemblbacteria:jhp_0813(gene)|uniprotkb:Q9ZKX1(identity) ensemblbacteria:AAD07439(transcript)|ensemblbacteria:HP_0359(gene)|uniprotkb:O25126(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ez+JnUQfkR/StqSTsWeMQjUAnv085963 rogid:UPbBnoNFXh2HaRteYammkH585nI85962 intact-crc:47D3044D066E3511|rigid:+lBgJihHkS9dd3ojCB9sY/u3zU4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25933 uniprotkb:O25129 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 intact:EBI-9262377|ensemblbacteria:AAD07440 psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:o25129_helpy(display_long)|uniprotkb:HP_0365(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334741|imex:IM-22256-1001 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) ensemblbacteria:AAD07440(transcript)|ensemblbacteria:HP_0365(gene)|uniprotkb:O25129(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 rogid:1d9uGJd4Hx7R3qOXuc9u7atVUVY85962 intact-crc:A5E47F2686936E8B|rigid:/aJcDycIPfEbYJuJTBkq4fkVeKY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25756 uniprotkb:O25129 intact:EBI-9261023|ensemblbacteria:AAD08177 intact:EBI-9262377|ensemblbacteria:AAD07440 psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:o25129_helpy(display_long)|uniprotkb:HP_0365(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334723|imex:IM-22256-1000 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) ensemblbacteria:AAD07440(transcript)|ensemblbacteria:HP_0365(gene)|uniprotkb:O25129(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 rogid:1d9uGJd4Hx7R3qOXuc9u7atVUVY85962 intact-crc:650268440608D946|rigid:EQTYofP7hqEVeD2rP0W1IEgZ8iA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25975 uniprotkb:O25129 intact:EBI-7502487|intact:MINT-184955|ensemblbacteria:AAD08476 intact:EBI-9262377|ensemblbacteria:AAD07440 psi-mi:o25975_helpy(display_long)|uniprotkb:purU(gene name)|psi-mi:purU(display_short)|uniprotkb:"Formyl-FH(4) hydrolase"(gene name synonym)|uniprotkb:HP_1434(locus name) psi-mi:o25129_helpy(display_long)|uniprotkb:HP_0365(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334759|imex:IM-22256-1002 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25975|refseq:WP_000889170.1|refseq:NP_208225.1|ensemblbacteria:AAD08476(transcript)|ensemblbacteria:HP_1434(gene)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|go:"GO:0008864"(formyltetrahydrofolate deformylase activity)|go:"GO:0016742"(hydroxymethyl-, formyl- and related transferase activity)|interpro:IPR002376(Formyl transferase, N-terminal)|interpro:IPR002912(Amino acid-binding ACT)|interpro:IPR004810(Formyltetrahydrofolate deformylase)|interpro:IPR036477|interpro:IPR041729|interpro:IPR044074|dip:DIP-3364N|uniprotkb:O25975(identity) ensemblbacteria:AAD07440(transcript)|ensemblbacteria:HP_0365(gene)|uniprotkb:O25129(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Lhr41VBvdwkNRr7sjPYuRgx9VBw85962 rogid:1d9uGJd4Hx7R3qOXuc9u7atVUVY85962 intact-crc:1C40C26CC39BD65A|rigid:QnXSSr9j76PKPdojKc59iFSwLHI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25743 uniprotkb:O25154 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 intact:EBI-9260679|ensemblbacteria:AAD07458 psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:chev3_helpy(display_long)|uniprotkb:cheV3(gene name)|psi-mi:cheV3(display_short)|uniprotkb:HP_0393(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334795|imex:IM-22256-1004 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) refseq:WP_000818647.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:NP_207191.1|interpro:IPR036061|ensemblbacteria:AAD07458(transcript)|ensemblbacteria:HP_0393(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|uniprotkb:O25154(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 rogid:4Ehxv3H/rtna3/+juonpRarYHAk85962 intact-crc:F7E96C13FE9CCCB4|rigid:aXIZSh+8aMUN4lBl9smt1FjyMhs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26083 uniprotkb:O25154 intact:EBI-9260625|ensemblbacteria:AAD08602 intact:EBI-9260679|ensemblbacteria:AAD07458 psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:chev3_helpy(display_long)|uniprotkb:cheV3(gene name)|psi-mi:cheV3(display_short)|uniprotkb:HP_0393(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334813|imex:IM-22256-1005 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) refseq:WP_000818647.1|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002545(CheW-like protein)|interpro:IPR011006(CheY-like)|interpro:IPR024181|refseq:NP_207191.1|interpro:IPR036061|ensemblbacteria:AAD07458(transcript)|ensemblbacteria:HP_0393(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0006935"(chemotaxis)|uniprotkb:O25154(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 rogid:4Ehxv3H/rtna3/+juonpRarYHAk85962 intact-crc:9B126A7C8533E9AA|rigid:hN/l4FzkpSTSyUy+k5veBWwJsXU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25134 uniprotkb:O25990 intact:EBI-7649244|ensemblbacteria:AAD07434|intact:MINT-183671 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:o25134_helpy(display_long)|uniprotkb:HP_0370(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334777|imex:IM-22256-1003 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25134|ensemblbacteria:AAD07434(transcript)|ensemblbacteria:HP_0370(gene)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0004075"(biotin carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR004549(Acetyl-CoA carboxylase, biotin carboxylase)|interpro:IPR005479(Carbamoyl phosphate synthetase, large subunit, ATP-binding)|interpro:IPR005481(Carbamoyl phosphate synthase, large subunit, N-terminal)|interpro:IPR005482(Biotin carboxylase, C-terminal)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR011764(Biotin carboxylation region)|interpro:IPR016185(PreATP-grasp-like fold)|refseq:NP_207168.1|refseq:WP_001045334.1|dip:DIP-3539N|uniprotkb:O25134(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:P/gGg8IPbMGyHGDgkh3jYCqw0Fw85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:36335F1F657CDAC3|rigid:B8birBh1NiYvuIcDC0Gzdq23AuE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25162 uniprotkb:O25089 intact:EBI-7501036|intact:MINT-179500|ensemblbacteria:AAD07476 intact:EBI-9262630|ensemblbacteria:AAD07390 psi-mi:o25162_helpy(display_long)|uniprotkb:HP_0406(locus name) psi-mi:chpep_helpy(display_long)|uniprotkb:chePep(gene name)|psi-mi:chePep(display_short)|uniprotkb:HP_0322(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334831|imex:IM-22256-1006 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25162|refseq:WP_000352085.1|refseq:NP_207204.1|ensemblbacteria:AAD07476(transcript)|ensemblbacteria:HP_0406(gene)|interpro:IPR025002|dip:DIP-3390N|uniprotkb:O25162(identity) refseq:WP_000782061.1|refseq:NP_207120.1|ensemblbacteria:AAD07390(transcript)|ensemblbacteria:HP_0322(gene)|go:"GO:0005737"(cytoplasm)|uniprotkb:O25089(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:hxokXA1Q5lYK2z31l1EwRPmAZrc85962 rogid:spR9Pm2SKxo2HiZSZF+lM0o1wMU85962 intact-crc:70C2442483C7C574|rigid:Qc8CtPn7sExFy6AktdaAOmynkO8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25170 uniprotkb:O26083 intact:EBI-7535609|intact:MINT-171960|ensemblbacteria:AAD07481 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:y415_helpy(display_long)|uniprotkb:HP_0415(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334849|imex:IM-22256-1007 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07481(transcript)|ensemblbacteria:HP_0415(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0055085"(transmembrane transport)|interpro:IPR006685(Mechanosensitive ion channel MscS)|interpro:IPR006686(Mechanosensitive ion channel MscS, conserved site)|interpro:IPR010920(Like-Sm ribonucleoprotein-related, core)|interpro:IPR011014(Mechanosensitive ion channel MscS, transmembrane-2)|interpro:IPR011066(Mechanosensitive ion channel MscS, C-terminal)|interpro:IPR023408|dip:DIP-3304N|mint:O25170|refseq:NP_207213.1|refseq:WP_001238108.1|uniprotkb:O25170(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+zpsxPIQFqkaWkySHftOOVY1Gss85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:AE1729C14110546E|rigid:QfZMn1M5YEGixWJXJToPCCLw47Q false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25183 uniprotkb:O25018 intact:EBI-7675579|ensemblbacteria:AAD07504|intact:MINT-173265 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 psi-mi:o25183_helpy(display_long)|uniprotkb:HP_0433(locus name) psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334867|imex:IM-22256-1008 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07504(transcript)|ensemblbacteria:HP_0433(gene)|mint:O25183|dip:DIP-3523N|uniprotkb:O25183(identity) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lY6gBrDP8FArsY7khgS0jtKDv+Y85962 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 intact-crc:066ED5BEED16509D|rigid:NhxsK5G1bxpY02UXp/Klifo8iEU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25214 uniprotkb:O24980 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-7552025|intact:MINT-165751|ensemblbacteria:AAD07248 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:psei_helpy(display_long)|uniprotkb:pseI(gene name)|psi-mi:pseI(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein I(gene name synonym)|uniprotkb:HP_0178(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334885|imex:IM-22256-1009 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_000941291.1|mint:O24980|refseq:NP_206977.1|ensemblbacteria:AAD07248(transcript)|ensemblbacteria:HP_0178(gene)|go:"GO:0016051"(carbohydrate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0047444"(N-acylneuraminate-9-phosphate synthase activity)|go:"GO:0070085"(glycosylation)|interpro:IPR006190(Antifreeze-like/N-acetylneuraminic acid synthase C-terminal)|interpro:IPR013132(N-acetylneuraminic acid synthase, N-terminal)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013974(SAF domain)|interpro:IPR020030|interpro:IPR036732|dip:DIP-3369N|uniprotkb:O24980(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:uZp/YwItniAjhnfvNYjPS7d1M+U85962 intact-crc:36E4E79177A7FCF3|rigid:8MmKKhRaJ2S+84/VIUYw3YFoD0o false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25214 uniprotkb:O25186 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334903|imex:IM-22256-1010 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 intact-crc:CB6BF8CA3A18270E|rigid:q8JzA84aYXPIgxZJnSkc5xJNk70 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25214 uniprotkb:O25756 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334939|imex:IM-22256-1012 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:9CF6026AECB327AC|rigid:6aEy7TjHry8TvHK67nijGC45tJc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25214 uniprotkb:O25664 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334921|imex:IM-22256-1011 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:8C031EAB3E69B928|rigid:2HwgHGXh3eY9g2oyWkCFwvSN9JQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25852 uniprotkb:O25214 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334957|imex:IM-22256-1013 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 intact-crc:904D119F17DFE8D2|rigid:w1coROhZ5aYvo+IGPQh2USU4Ays false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56132 uniprotkb:O25214 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334975|imex:IM-22256-1014 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 intact-crc:C800C4500D95D456|rigid:GC//YwZo3/23oYrZDqOmDI2Im1M false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25214 uniprotkb:Q9ZL79 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9262981|ensemblbacteria:AAD06276 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:q9zl79_helpj(display_long)|uniprotkb:jhp_0701(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335011|imex:IM-22256-1016 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) interpro:IPR005358(Protein of unknown function UPF0153)|ensemblbacteria:AAD06276(transcript)|ensemblbacteria:jhp_0701(gene)|uniprotkb:Q9ZL79(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:lF/xSeC5ME9IUHouS6yOLLg1grE85963 intact-crc:D128801D8DDF219D|rigid:m9ri8DUJ+HFSB5FFviPFB17LMa0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25214 uniprotkb:Q9ZKJ9 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9334993|imex:IM-22256-1015 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:A2F172252BDED8B6|rigid:y6S8xMWdM+1ZvEyHy9pUetcekeE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25214 uniprotkb:Q9ZN32 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335029|imex:IM-22256-1017 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:111F97F0F2501ACD|rigid:M6b1jWObhnQx+eeH+lFpsGW0dUU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25228 uniprotkb:O25228 intact:EBI-9263078|ensemblbacteria:AAD07553 intact:EBI-9263078|ensemblbacteria:AAD07553 psi-mi:o25228_helpy(display_long)|uniprotkb:HP_0484(locus name) psi-mi:o25228_helpy(display_long)|uniprotkb:HP_0484(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335065|imex:IM-22256-1019 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000482941.1|refseq:NP_207281.1|ensemblbacteria:AAD07553(transcript)|ensemblbacteria:HP_0484(gene)|uniprotkb:O25228(identity) refseq:WP_000482941.1|refseq:NP_207281.1|ensemblbacteria:AAD07553(transcript)|ensemblbacteria:HP_0484(gene)|uniprotkb:O25228(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DJqwHbhX2V28W4W+DPmGl7KrhnM85962 rogid:DJqwHbhX2V28W4W+DPmGl7KrhnM85962 intact-crc:386D33C0E892ABFC|rigid:4tNz+Pw3uB1bdwhvIUkuOV5dqPk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25225 uniprotkb:O25610 intact:EBI-7665004|ensemblbacteria:AAD07546|intact:MINT-4074340 intact:EBI-9263045|ensemblbacteria:AAD07999 psi-mi:bipa_helpy(display_long)|uniprotkb:bipA(gene name)|psi-mi:bipA(display_short)|uniprotkb:HP_0480(locus name)|uniprotkb:GTP-binding protein BipA(gene name synonym) psi-mi:y956_helpy(display_long)|uniprotkb:RNA pseudouridylate synthase(gene name synonym)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:HP_0956(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335047|imex:IM-22256-1018 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000640(Translation elongation factor EFG/EF2, C-terminal)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR004161(Translation elongation factor EFTu/EF1A, domain 2)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR006298(GTP-binding protein TypA)|ensemblbacteria:AAD07546(transcript)|ensemblbacteria:HP_0480(gene)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0000049"(tRNA binding)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0019843"(rRNA binding)|go:"GO:0043022"(ribosome binding)|go:"GO:1990904"(ribonucleoprotein complex)|mint:O25225|interpro:IPR035647|interpro:IPR035651|refseq:WP_000790221.1|interpro:IPR031157|interpro:IPR027417|refseq:NP_207278.1|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR042116|uniprotkb:O25225(identity) refseq:WP_000409617.1|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:NP_207748.1|ensemblbacteria:AAD07999(transcript)|ensemblbacteria:HP_0956(gene)|go:"GO:0000455"(enzyme-directed rRNA pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|uniprotkb:O25610(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Not known; probably interacts with the ribosomes in a GTP dependent manner - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nl9TqPG2++w1IHcg+drb1xCMYyY85962 rogid:I9CDLgzCdYoEonESpJtaMgKOzLs85962 intact-crc:F2085EEB27ACC05D|rigid:RWu9xXdY/zFK8LOnW2S0ektZ2Lw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25940 uniprotkb:O25237 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-7571766|intact:MINT-165537|ensemblbacteria:AAD07569 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:y495_helpy(display_long)|uniprotkb:HP_0495(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335083|imex:IM-22256-1020 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) mint:O25237|refseq:WP_001138777.1|refseq:NP_207292.1|ensemblbacteria:AAD07569(transcript)|ensemblbacteria:HP_0495(gene)|interpro:IPR007454(Protein of unknown function DUF493)|interpro:IPR027471|rcsb pdb:2H9Z|rcsb pdb:2JOQ|dip:DIP-3435N|uniprotkb:O25237(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:RbOYqFgStMZMNCRBjS0Z56r2KUk85962 intact-crc:92DF071D3E466895|rigid:b15dJU2N/VYBNjIE5nKRtadpiEQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25965 uniprotkb:O25237 intact:EBI-7631463|ensemblbacteria:AAD08463|intact:MINT-169065 intact:EBI-7571766|intact:MINT-165537|ensemblbacteria:AAD07569 psi-mi:o25965_helpy(display_long)|uniprotkb:HP_1421(locus name) psi-mi:y495_helpy(display_long)|uniprotkb:HP_0495(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335101|imex:IM-22256-1021 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08463(transcript)|ensemblbacteria:HP_1421(gene)|interpro:IPR001482(Type II secretion system protein E)|interpro:IPR027417|mint:O25965|refseq:WP_000854872.1|refseq:NP_208212.1|dip:DIP-3731N|uniprotkb:O25965(identity) mint:O25237|refseq:WP_001138777.1|refseq:NP_207292.1|ensemblbacteria:AAD07569(transcript)|ensemblbacteria:HP_0495(gene)|interpro:IPR007454(Protein of unknown function DUF493)|interpro:IPR027471|rcsb pdb:2H9Z|rcsb pdb:2JOQ|dip:DIP-3435N|uniprotkb:O25237(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gRZd8B4YMHshw7qZZacp68EYNwU85962 rogid:RbOYqFgStMZMNCRBjS0Z56r2KUk85962 intact-crc:248AE1DDE09D19E5|rigid:OQK4R7DeHRdkbyH2HKKKhmGN0Hk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25237 uniprotkb:P56132 intact:EBI-7571766|intact:MINT-165537|ensemblbacteria:AAD07569 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 psi-mi:y495_helpy(display_long)|uniprotkb:HP_0495(locus name) psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335119|imex:IM-22256-1022 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25237|refseq:WP_001138777.1|refseq:NP_207292.1|ensemblbacteria:AAD07569(transcript)|ensemblbacteria:HP_0495(gene)|interpro:IPR007454(Protein of unknown function DUF493)|interpro:IPR027471|rcsb pdb:2H9Z|rcsb pdb:2JOQ|dip:DIP-3435N|uniprotkb:O25237(identity) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RbOYqFgStMZMNCRBjS0Z56r2KUk85962 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 intact-crc:47F64C842A7D0071|rigid:a5sW1JMUQv+fen6scvx2T3wyuIs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25248 uniprotkb:O24853 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-7635518|ensemblbacteria:AAD07074|intact:MINT-164319 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:nusb_helpy(display_long)|uniprotkb:nusB(gene name)|psi-mi:nusB(display_short)|uniprotkb:Antitermination factor NusB(gene name synonym)|uniprotkb:HP_0001(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335155|imex:IM-22256-1024 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) refseq:WP_000235740.1|ensemblbacteria:AAD07074(transcript)|ensemblbacteria:HP_0001(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0031564"(transcription antitermination)|interpro:IPR006027(NusB/RsmB/TIM44)|interpro:IPR011605(NusB antitermination factor)|interpro:IPR035926|mint:O24853|refseq:NP_206803.1|dip:DIP-3047N|uniprotkb:O24853(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Involved in the transcription termination process figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:PQhiYWqCl3QjodzOzIzpwmyiFvs85962 intact-crc:D30BD419A16C4101|rigid:haBbTokzvszvrobdnLVtACzHk1Q false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25242 uniprotkb:O25172 intact:EBI-7532786|intact:MINT-176339|ensemblbacteria:AAD07565 intact:EBI-9262675|ensemblbacteria:AAD07489 psi-mi:dpo3b_helpy(display_long)|uniprotkb:Beta-clamp processivity factor(gene name synonym)|uniprotkb:DNA polymerase III beta sliding clamp subunit(gene name synonym)|uniprotkb:DNA polymerase III subunit beta(gene name synonym)|uniprotkb:HP_0500(locus name)|uniprotkb:dnaN(gene name)|psi-mi:dnaN(display_short) psi-mi:o25172_helpy(display_long)|uniprotkb:HP_0418(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335137|imex:IM-22256-1023 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25242|refseq:WP_000704186.1|refseq:NP_207297.1|ensemblbacteria:AAD07565(transcript)|ensemblbacteria:HP_0500(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006271"(DNA strand elongation involved in DNA replication)|go:"GO:0008408"(3'-5' exonuclease activity)|go:"GO:0009360"(DNA polymerase III complex)|interpro:IPR001001(DNA polymerase III, beta chain)|interpro:IPR022634|interpro:IPR022635|interpro:IPR022637|rcsb pdb:4RKI|rcsb pdb:4S3I|rcsb pdb:5FRQ|rcsb pdb:5FVE|rcsb pdb:5FXT|rcsb pdb:5G48|rcsb pdb:5G4Q|dip:DIP-3288N|uniprotkb:O25242(identity) refseq:WP_001236552.1|refseq:NP_207216.1|ensemblbacteria:AAD07489(transcript)|ensemblbacteria:HP_0418(gene)|uniprotkb:O25172(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:CQBMfETiMgCTU87/qpJz+NKtpPQ85962 rogid:T8+oNcscBN0byNIAncwJoENu/uM85962 intact-crc:42854A24D51B95E9|rigid:V4bUvpcAYSXImCmtl+egXOhd+QU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25248 uniprotkb:O24916 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-9263249|ensemblbacteria:AAD07158 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:o24916_helpy(display_long)|uniprotkb:HP_0090(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335173|imex:IM-22256-1025 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) interpro:IPR001227(Acyl transferase region)|refseq:WP_001199067.1|interpro:IPR004410(Malonyl CoA-acyl carrier protein transacylase)|interpro:IPR014043(Acyl transferase)|interpro:IPR016035(Acyl transferase/acyl hydrolase/lysophospholipase)|interpro:IPR016036(Malonyl-CoA ACP transacylase, ACP-binding)|interpro:IPR024925|refseq:NP_206890.1|ensemblbacteria:AAD07158(transcript)|ensemblbacteria:HP_0090(gene)|go:"GO:0004314"([acyl-carrier-protein] S-malonyltransferase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006633"(fatty acid biosynthetic process)|uniprotkb:O24916(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:dhBknuSA2cruxErjJyRuPLPEACM85962 intact-crc:726ACFC417B72CB7|rigid:azxxBvboQm5mlLbVTKfat4uQwa8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25042 uniprotkb:O25248 intact:EBI-7538890|intact:MINT-164361|ensemblbacteria:AAD07336 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 psi-mi:y262_helpy(display_long)|uniprotkb:HP_0262(locus name) psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335191|imex:IM-22256-1026 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25042|ensemblbacteria:AAD07336(transcript)|ensemblbacteria:HP_0262(gene)|interpro:IPR041551|dip:DIP-3315N|refseq:NP_207060.1|uniprotkb:O25042(identity) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:aBlAx6FXx0nYBFlMplRU1kY2b8I85962 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 intact-crc:52B92668C18EB0D1|rigid:NlvPqyg4uICqhS3VtwQuQafRo+g false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25248 uniprotkb:O25190 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-9263282|ensemblbacteria:AAD07509 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:o25190_helpy(display_long)|uniprotkb:HP_0442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335209|imex:IM-22256-1027 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) refseq:WP_001173702.1|refseq:NP_207240.1|ensemblbacteria:AAD07509(transcript)|ensemblbacteria:HP_0442(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25190(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:atrXJxfuJh751r2ZOeGp3C19y3M85962 intact-crc:7994E2812EBAE93E|rigid:IJMOwudi0laEzr873gY2+jpBbVM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25248 uniprotkb:O25368 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-9263303|ensemblbacteria:AAD07719 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:o25368_helpy(display_long)|uniprotkb:mqnE(gene name)|psi-mi:mqnE(display_short)|uniprotkb:Menaquinone biosynthetic enzyme MqnE(gene name synonym)|uniprotkb:HP_0654(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335227|imex:IM-22256-1028 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) refseq:WP_000346642.1|interpro:IPR034405|interpro:IPR007197(Radical SAM)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020050|interpro:IPR022432|refseq:NP_207448.1|ensemblbacteria:AAD07719(transcript)|ensemblbacteria:HP_0654(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009234"(menaquinone biosynthetic process)|go:"GO:0044689"(7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102573"(aminodeoxyfutalosine synthase activity)|uniprotkb:O25368(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:9R/kKsdk4/SLaXWEbV3rPkCNlwg85962 intact-crc:B7C42BA6BD5EE377|rigid:mC7+6+bX1lNMbzeiVN+P8omttrs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25248 uniprotkb:O25446 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-7493854|intact:MINT-164516|ensemblbacteria:AAD07802 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:o25446_helpy(display_long)|uniprotkb:HP_0750(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335263|imex:IM-22256-1030 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) mint:O25446|refseq:NP_207543.1|refseq:WP_000277334.1|ensemblbacteria:AAD07802(transcript)|ensemblbacteria:HP_0750(gene)|interpro:IPR011055(Duplicated hybrid motif)|interpro:IPR016047(Peptidase M23)|dip:DIP-3312N|uniprotkb:O25446(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:YHQbJlaPCQfqcXV6yHl68EepjeQ85962 intact-crc:B0103460C10A3EEE|rigid:Ds/+MQyujWWxA9hsxJe31gaTNTg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25248 uniprotkb:O26047 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-7639052|ensemblbacteria:AAD08559|intact:MINT-175273 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:o26047_helpy(display_long)|uniprotkb:HP_1518(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335281|imex:IM-22256-1031 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) ensemblbacteria:AAD08559(transcript)|ensemblbacteria:HP_1518(gene)|mint:O26047|refseq:WP_000617669.1|refseq:NP_208309.1|dip:DIP-3752N|uniprotkb:O26047(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:7IXQGYsBd7MHXiMCSpSjo5t9EaM85962 intact-crc:AF3C2FD2F88A29FE|rigid:u44vlVVTP5a7O6Y8pJrp47Z8bxo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25378 uniprotkb:O25248 intact:EBI-7672575|ensemblbacteria:AAD07735|intact:MINT-159859 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 psi-mi:o25378_helpy(display_long)|uniprotkb:HP_0667(locus name) psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335245|imex:IM-22256-1029 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07735(transcript)|ensemblbacteria:HP_0667(gene)|interpro:IPR039442|mint:O25378|dip:DIP-3471N|uniprotkb:O25378(identity) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Rasu23EsBsUF7qWG9M0g8Odk6UM85962 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 intact-crc:F90CEAED530B0605|rigid:dfHa7P4Xzyy/js+GnL66BVfatI8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26092 uniprotkb:O25248 intact:EBI-7497964|intact:MINT-175939|ensemblbacteria:AAD08609 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 psi-mi:o26092_helpy(display_long)|uniprotkb:HP_1572(locus name) psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335299|imex:IM-22256-1032 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26092|refseq:WP_000044457.1|refseq:NP_208363.1|ensemblbacteria:AAD08609(transcript)|ensemblbacteria:HP_1572(gene)|interpro:IPR008258(Lytic transglycosylase-like, catalytic)|interpro:IPR018392|interpro:IPR023346|interpro:IPR036779|dip:DIP-3299N|uniprotkb:O26092(identity) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wrDDc9xcztpd6MTxd/CD1masB7o85962 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 intact-crc:E75585BEDF57C942|rigid:1123hvJTLKGrEnhM47BTBVqsQkg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25248 uniprotkb:Q9ZKJ2 intact:EBI-7572013|intact:MINT-163553|ensemblbacteria:AAD07572 intact:EBI-9261157|ensemblbacteria:AAD06521 psi-mi:o25248_helpy(display_long)|uniprotkb:HP_0507(locus name) psi-mi:q9zkj2_helpj(display_long)|uniprotkb:jhp_0943(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335317|imex:IM-22256-1033 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25248|refseq:WP_000119978.1|refseq:NP_207304.1|ensemblbacteria:AAD07572(transcript)|ensemblbacteria:HP_0507(gene)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR015797(NUDIX)|dip:DIP-3438N|uniprotkb:O25248(identity) ensemblbacteria:AAD06521(transcript)|ensemblbacteria:jhp_0943(gene)|uniprotkb:Q9ZKJ2(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:x5p/uKwFifn5iNVsx2VnCPiLCYI85962 rogid:Fd4GrZEw1VnF/1tgidHZSgFgARE85963 intact-crc:C9E55F676504DFFA|rigid:E5f+88tOhWqxgX5KFBYdpUZRgw4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25098 uniprotkb:O25257 intact:EBI-7525931|intact:MINT-161558|ensemblbacteria:AAD07400 intact:EBI-2506882|ensemblbacteria:AAD07588 psi-mi:mind_helpy(display_long)|uniprotkb:Cell division inhibitor MinD(gene name synonym)|uniprotkb:HP_0331(locus name)|uniprotkb:minD(gene name)|psi-mi:minD(display_short) psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335353|imex:IM-22256-1035 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25098|refseq:WP_001019069.1|refseq:NP_207129.1|ensemblbacteria:AAD07400(transcript)|ensemblbacteria:HP_0331(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR010223(Septum site-determining protein MinD)|interpro:IPR025501|interpro:IPR027417|dip:DIP-3247N|uniprotkb:O25098(identity) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) psi-mi:"MI:0469"(intact) comment:mint|function:ATPase required for the correct placement of the division site. Cell division inhibitors minC and minD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize ftsZ filaments that have formed before they mature into polar Z rings - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:g+X6QS/gyLXZ5JsxHvQ8dHSCKMw85962 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 intact-crc:E6C45F6137AE2201|rigid:L0WtJEEu6TCskhLuaTDyDPu6aWs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25060 uniprotkb:O25257 intact:EBI-9263459|ensemblbacteria:AAD07354 intact:EBI-2506882|ensemblbacteria:AAD07588 psi-mi:o25060_helpy(display_long)|uniprotkb:HP_0286(locus name) psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335335|imex:IM-22256-1034 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001116713.1|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR027417|refseq:NP_207084.1|interpro:IPR037219|interpro:IPR041569|ensemblbacteria:AAD07354(transcript)|ensemblbacteria:HP_0286(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006508"(proteolysis)|go:"GO:0016021"(integral component of membrane)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051301"(cell division)|uniprotkb:O25060(identity) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kyiklpqc9v6vtPNnABem25DfmSk85962 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 intact-crc:81ED80C098E183AE|rigid:Mvlh4YT05fMl5BN3MjE28h5pa4U false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25678 uniprotkb:O25257 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-2506882|ensemblbacteria:AAD07588 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335371|imex:IM-22256-1036 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 intact-crc:6E96F277A81F5AEA|rigid:Qq0Q8OUd7zcyhzPbZkkdiBWEs8k false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25257 uniprotkb:O25872 intact:EBI-2506882|ensemblbacteria:AAD07588 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o25257_helpy(display_long)|uniprotkb:HP_0520(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335389|imex:IM-22256-1037 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07588(transcript)|ensemblbacteria:HP_0520(gene)|go:"GO:0016021"(integral component of membrane)|refseq:NP_207317.1|refseq:WP_000785752.1|uniprotkb:O25257(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nwlLLNHVvLbQTeirj99iZpwD1/485962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:C48ECE544BE97EB6|rigid:VwpkgvsRgxbOpVTTY5w0+781whs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25431 uniprotkb:O25258 intact:EBI-9263549|ensemblbacteria:AAD07790 intact:EBI-2506871|ensemblbacteria:AAD07589 psi-mi:o25431_helpy(display_long)|uniprotkb:HP_0731(locus name) psi-mi:o25258_helpy(display_long)|uniprotkb:HP_0522(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335407|imex:IM-22256-1038 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000787447.1|interpro:IPR006073(GTP1/OBG)|interpro:IPR027417|refseq:NP_207525.1|interpro:IPR040576|ensemblbacteria:AAD07790(transcript)|ensemblbacteria:HP_0731(gene)|go:"GO:0005525"(GTP binding)|uniprotkb:O25431(identity) ensemblbacteria:AAD07589(transcript)|ensemblbacteria:HP_0522(gene)|refseq:NP_207318.1|refseq:WP_000488766.1|dip:DIP-3529N|mint:O25258|uniprotkb:O25258(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zHDQgn7ZO9QWD5NZUkuaPaSaFNA85962 rogid:wcW402Skc8nrZHe73TcbOslWYps85962 intact-crc:84E2A75B2D8F981C|rigid:DvgJQ1SUeN1c3i6lQBYhhSRak9Y false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25743 uniprotkb:O25258 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 intact:EBI-2506871|ensemblbacteria:AAD07589 psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:o25258_helpy(display_long)|uniprotkb:HP_0522(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335425|imex:IM-22256-1039 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) ensemblbacteria:AAD07589(transcript)|ensemblbacteria:HP_0522(gene)|refseq:NP_207318.1|refseq:WP_000488766.1|dip:DIP-3529N|mint:O25258|uniprotkb:O25258(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 rogid:wcW402Skc8nrZHe73TcbOslWYps85962 intact-crc:9B692F37D1DE389B|rigid:lZd2klF8w+rtZYAMAeqAL/0Tu7M false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25835 uniprotkb:O25261 intact:EBI-7682324|ensemblbacteria:AAD08282|intact:MINT-179287 intact:EBI-9263582|ensemblbacteria:AAD07593 psi-mi:cara_helpy(display_long)|uniprotkb:HP_1237(locus name)|uniprotkb:carA(gene name)|psi-mi:carA(display_short)|uniprotkb:Carbamoyl-phosphate synthetase glutamine chain(gene name synonym) psi-mi:o25261_helpy(display_long)|uniprotkb:HP_0526(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335443|imex:IM-22256-1040 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08282(transcript)|ensemblbacteria:HP_1237(gene)|go:"GO:0004088"("carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0006207"('de novo' pyrimidine nucleobase biosynthetic process)|go:"GO:0006526"(arginine biosynthetic process)|go:"GO:0006541"(glutamine metabolic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|interpro:IPR002474(Carbamoyl phosphate synthase, small subunit, N-terminal)|interpro:IPR006274(Carbamoyl phosphate synthase, small subunit)|interpro:IPR017926|interpro:IPR029062|interpro:IPR035686|interpro:IPR036480|mint:O25835|refseq:NP_208029.1|refseq:WP_000254171.1|dip:DIP-3716N|uniprotkb:O25835(identity) refseq:WP_000418809.1|interpro:IPR015139(Cag pathogenicity island protein, CagZ)|refseq:NP_207322.1|rcsb pdb:6JHO|interpro:IPR036303|ensemblbacteria:AAD07593(transcript)|ensemblbacteria:HP_0526(gene)|uniprotkb:O25261(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gAHDEhdmYidFyW/kb1zE03sniRc85962 rogid:9tGFgyPZpUWZ7K5r04mdtqRhhMs85962 intact-crc:CA6CDA937D36D73A|rigid:FszFpaO44m8oSh1Ngyl1Hfe2uVo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25270 uniprotkb:O25423 intact:EBI-527906|ensemblbacteria:AAD07603 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335461|imex:IM-22256-1041 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:6706A33F47226AB6|rigid:BEuUPiKC1jSUCn22mWnlkrQQCBM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZKL0 uniprotkb:O25270 intact:EBI-9263715|ensemblbacteria:AAD06502 intact:EBI-527906|ensemblbacteria:AAD07603 psi-mi:q9zkl0_helpj(display_long)|uniprotkb:jhp_0925(locus name) psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335515|imex:IM-22256-1044 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06502(transcript)|ensemblbacteria:jhp_0925(gene)|uniprotkb:Q9ZKL0(identity) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Cx2zMo2YQpU8lrmkD3fHlcXnE6A85963 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 intact-crc:B4B53BB34A96D4C1|rigid:OOgruLVOGUkJVc0fA47IKad56kQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25270 uniprotkb:O25479 intact:EBI-527906|ensemblbacteria:AAD07603 intact:EBI-9260912|ensemblbacteria:AAD07838 psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:o25479_helpy(display_long)|uniprotkb:HP_0790(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335479|imex:IM-22256-1042 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) refseq:WP_000548846.1|interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_207583.1|ensemblbacteria:AAD07838(transcript)|ensemblbacteria:HP_0790(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O25479(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 rogid:3vMD4PEETybdKkrbPWu3T1Std2U85962 intact-crc:F565AFF514C16D25|rigid:0gHlNJxSMB78J+k8GQYcOrV4Ir8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34995 uniprotkb:O25270 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 intact:EBI-527906|ensemblbacteria:AAD07603 psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:o25270_helpy(display_long)|uniprotkb:HP_0537(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335497|imex:IM-22256-1043 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) refseq:NP_207333.1|ensemblbacteria:AAD07603(transcript)|ensemblbacteria:HP_0537(gene)|refseq:WP_000879904.1|dip:DIP-3311N|mint:O25270|uniprotkb:O25270(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 rogid:iwcUnBPTaahwwOYGMpWmwJHdnoA85962 intact-crc:EEBAE3F1C9834B4B|rigid:/VbG01/aYrFq4dhRO65NLHzhXs0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24991 uniprotkb:O25300 intact:EBI-7525732|intact:MINT-165883|ensemblbacteria:AAD07263 intact:EBI-9264002|ensemblbacteria:AAD07643 psi-mi:lpxd_helpy(display_long)|uniprotkb:HP_0196(locus name)|uniprotkb:lpxD(gene name)|psi-mi:lpxD(display_short) psi-mi:lep_helpy(display_long)|uniprotkb:lepB(gene name)|psi-mi:lepB(display_short)|uniprotkb:Leader peptidase I(gene name synonym)|uniprotkb:HP_0576(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335551|imex:IM-22256-1046 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24991|refseq:WP_000777041.1|refseq:NP_206995.1|ensemblbacteria:AAD07263(transcript)|ensemblbacteria:HP_0196(gene)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016410"(N-acyltransferase activity)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR007691(UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD)|interpro:IPR011004(Trimeric LpxA-like)|interpro:IPR020573|dip:DIP-3246N|uniprotkb:O24991(identity) refseq:WP_000670710.1|interpro:IPR019533|interpro:IPR000223(Peptidase S26A, signal peptidase I)|interpro:IPR019758|refseq:NP_207371.1|interpro:IPR036286|ensemblbacteria:AAD07643(transcript)|ensemblbacteria:HP_0576(gene)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0006465"(signal peptide processing)|uniprotkb:O25300(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QasheDoo1gV2p/HLISvtoewJ1Fg85962 rogid:oLuWSBw6mvk5vxTPYQzf0n1OA/E85962 intact-crc:21EFA42FDD5C08D3|rigid:XWcwfswVc9QWNaw07e4ctzJ7iMk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25276 uniprotkb:O25649 intact:EBI-2585205|ensemblbacteria:AAD07609 intact:EBI-9260700|ensemblbacteria:AAD08050 psi-mi:o25276_helpy(display_long)|uniprotkb:HP_0543(locus name) psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335533|imex:IM-22256-1045 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207339.1|ensemblbacteria:AAD07609(transcript)|ensemblbacteria:HP_0543(gene)|refseq:WP_000814259.1|uniprotkb:O25276(identity) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1rewNPLJqe/y7nFjRH1uemCxYIA85962 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 intact-crc:76B4F50CC46B4E0C|rigid:VUCpVivZ+LobR15UU4q3kb+cCZQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25313 uniprotkb:O25018 intact:EBI-7684348|ensemblbacteria:AAD07656|intact:MINT-162176 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 psi-mi:o25313_helpy(display_long)|uniprotkb:HP_0591(locus name) psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335569|imex:IM-22256-1047 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25313|ensemblbacteria:AAD07656(transcript)|ensemblbacteria:HP_0591(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:WP_000388051.1|refseq:NP_207386.1|dip:DIP-3451N|uniprotkb:O25313(identity) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+46+PF3uRbdyh6c+FTZDJyJr6so85962 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 intact-crc:6ABD8F28E63035B6|rigid:M/z2zJvJXNotQ2m0C56CX6jNR10 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25313 uniprotkb:O26083 intact:EBI-7684348|ensemblbacteria:AAD07656|intact:MINT-162176 intact:EBI-9260625|ensemblbacteria:AAD08602 psi-mi:o25313_helpy(display_long)|uniprotkb:HP_0591(locus name) psi-mi:o26083_helpy(display_long)|uniprotkb:HP_1562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335587|imex:IM-22256-1048 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25313|ensemblbacteria:AAD07656(transcript)|ensemblbacteria:HP_0591(gene)|go:"GO:0016903"(oxidoreductase activity, acting on the aldehyde or oxo group of donors)|interpro:IPR002869(Pyruvate ferredoxin/flavodoxin oxidoreductase)|interpro:IPR019752|refseq:WP_000388051.1|refseq:NP_207386.1|dip:DIP-3451N|uniprotkb:O25313(identity) refseq:WP_000961773.1|interpro:IPR002491(Periplasmic binding protein)|refseq:NP_208353.1|ensemblbacteria:AAD08602(transcript)|ensemblbacteria:HP_1562(gene)|uniprotkb:O26083(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+46+PF3uRbdyh6c+FTZDJyJr6so85962 rogid:VKfP6/yG7HE4fDTjOuMdXcrYC9c85962 intact-crc:9314A456DB3CA3F4|rigid:KQ+8awa1AE/hdV6TRm5UycYpDSY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25335 uniprotkb:Q9ZKK8 intact:EBI-7574904|intact:MINT-186599|ensemblbacteria:AAD07688 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25335_helpy(display_long)|uniprotkb:HP_0614(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335605|imex:IM-22256-1049 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000969950.1|mint:O25335|refseq:NP_207409.1|ensemblbacteria:AAD07688(transcript)|ensemblbacteria:HP_0614(gene)|dip:DIP-3463N|uniprotkb:O25335(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tgSpScAFbkrTcteMgDioyPcKPk885962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:9BA439EFD8CF90F7|rigid:BwmVA4ZJqaFTQ+Xq32hK7x1Ltk4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25338 uniprotkb:O25185 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-7556532|intact:MINT-166764|ensemblbacteria:AAD07506 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:o25185_helpy(display_long)|uniprotkb:HP_0435(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335623|imex:IM-22256-1050 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) mint:O25185|ensemblbacteria:AAD07506(transcript)|ensemblbacteria:HP_0435(gene)|go:"GO:0004386"(helicase activity)|interpro:IPR041677|interpro:IPR027417|dip:DIP-3394N|uniprotkb:O25185(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:Wo8lRDnMrBLGNLrCPjLFcu6Aemc85962 intact-crc:C3B10604EF27B185|rigid:e2wJGc5WmIOlBmRI9b8o5T/jsUU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25338 uniprotkb:O25186 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335641|imex:IM-22256-1051 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 intact-crc:71DBC25755E3E23F|rigid:cffKC1dbbypR6rXSGIXSq7BUVhQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25338 uniprotkb:O25423 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335659|imex:IM-22256-1052 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:B1EAEA628CAB877D|rigid:x8LUvNav0bTShPP9v0KxVAaZtis false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25338 uniprotkb:O25544 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9261745|ensemblbacteria:AAD07925 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:ruvc_helpy(display_long)|uniprotkb:ruvC(gene name)|psi-mi:ruvC(display_short)|uniprotkb:Holliday junction nuclease RuvC(gene name synonym)|uniprotkb:Holliday junction resolvase RuvC(gene name synonym)|uniprotkb:HP_0877(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335677|imex:IM-22256-1053 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) refseq:WP_001221153.1|interpro:IPR002176(Crossover junction endodeoxyribonuclease RuvC)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR020563|refseq:NP_207671.1|interpro:IPR036397|ensemblbacteria:AAD07925(transcript)|ensemblbacteria:HP_0877(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008821"(crossover junction endodeoxyribonuclease activity)|uniprotkb:O25544(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:OIge7ikZ0hjuU04ADq18nNHW2NM85962 intact-crc:4F3056900B03D2D6|rigid:dy+GLNu21JLeDjXVyhUyn6hHhJQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25338 uniprotkb:O25676 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335695|imex:IM-22256-1054 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:DB98DBD34E05E798|rigid:QVKMT+D68geemptvqSysJjFJFjk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25338 uniprotkb:O25813 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9264319|ensemblbacteria:AAD08259 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:o25813_helpy(display_long)|uniprotkb:HP_1214(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335713|imex:IM-22256-1055 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) refseq:WP_001225412.1|refseq:NP_208006.1|interpro:IPR029057|ensemblbacteria:AAD08259(transcript)|ensemblbacteria:HP_1214(gene)|uniprotkb:O25813(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:iqHRK4pl63bBSHNb2A56ofp3Wu885962 intact-crc:1B7ECCB1CE9E5055|rigid:vo7YtdL6vrfYSBKvq09XWyFhTIc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25852 uniprotkb:O25338 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335731|imex:IM-22256-1056 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 intact-crc:089C8270222CB7E7|rigid:Ohqtm4Ukt2dy2xKTul+PyX3OJug false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25338 uniprotkb:O25983 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335749|imex:IM-22256-1057 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:B1DECF64198ACB51|rigid:EjwV3ynXfeMVggb/eh9bAqq8U6Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25338 uniprotkb:Q9ZJN3 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-9264413|ensemblbacteria:AAD06844 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:q9zjn3_helpj(display_long)|uniprotkb:JHP1272(gene name)|psi-mi:JHP1272(display_short)|uniprotkb:jhp_1272(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335785|imex:IM-22256-1059 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) interpro:IPR003356(N-6 DNA methylase)|interpro:IPR029063|interpro:IPR041635|ensemblbacteria:AAD06844(transcript)|ensemblbacteria:jhp_1272(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZJN3(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:2Btvw0CrXOSJ1SBiIVCTxact1hc85963 intact-crc:A4A5E48AE8753087|rigid:f3kjl+Pdt1PEmWopnF980A86x8E false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25338 uniprotkb:P56118 intact:EBI-7494589|intact:MINT-162121|ensemblbacteria:AAD07685 intact:EBI-7579505|intact:MINT-159557|ensemblbacteria:AAD07725 psi-mi:muts2_helpy(display_long)|uniprotkb:mutS2(gene name)|psi-mi:mutS2(display_short)|uniprotkb:mutSB(gene name synonym)|uniprotkb:HP_0621(locus name) psi-mi:rnc_helpy(display_long)|uniprotkb:rnc(gene name)|psi-mi:rnc(display_short)|uniprotkb:HP_0662(locus name)|uniprotkb:Ribonuclease III(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335767|imex:IM-22256-1058 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25338|refseq:NP_207415.1|refseq:WP_010875507.1|ensemblbacteria:AAD07685(transcript)|ensemblbacteria:HP_0621(gene)|go:"GO:0004519"(endonuclease activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006298"(mismatch repair)|go:"GO:0008094"(ATP-dependent activity, acting on DNA)|go:"GO:0030983"(mismatched DNA binding)|go:"GO:0032300"(mismatch repair complex)|go:"GO:0045910"(negative regulation of DNA recombination)|interpro:IPR000432(DNA mismatch repair protein MutS, C-terminal)|interpro:IPR002625(Smr protein/MutS2 C-terminal)|interpro:IPR005747(DNA mismatch repair protein MutS, type 2)|interpro:IPR007696(DNA mismatch repair protein MutS, core)|interpro:IPR027417|interpro:IPR036063|interpro:IPR036187|dip:DIP-3208N|uniprotkb:O25338(identity) interpro:IPR036389|interpro:IPR000999(Ribonuclease III)|interpro:IPR011907(Ribonuclease III, bacterial)|refseq:WP_015056054.1|mint:P56118|interpro:IPR014720(Double-stranded RNA-binding-like)|ensemblbacteria:AAD07725(transcript)|ensemblbacteria:HP_0662(gene)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0004525"(ribonuclease III activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006364"(rRNA processing)|go:"GO:0006396"(RNA processing)|go:"GO:0006397"(mRNA processing)|go:"GO:0008033"(tRNA processing)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0019843"(rRNA binding)|go:"GO:0046872"(metal ion binding)|refseq:NP_207456.1|uniprotkb:P56118(identity) psi-mi:"MI:0469"(intact) comment:mint function:Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OS+U6CLpTMeRfuQinsggWdzbnwU85962 rogid:FmAIgmZRecg4dArTq2cFJHeKK4M85962 intact-crc:9AC81D86E02C36AF|rigid:cA7UKSDQ57Hke9Dj8ue0WGLvznM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25664 uniprotkb:O25346 intact:EBI-9261767|ensemblbacteria:AAD08064 intact:EBI-9264451|ensemblbacteria:AAD07700 psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:o25346_helpy(display_long)|uniprotkb:HP_0629(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335821|imex:IM-22256-1061 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) refseq:WP_000387635.1|interpro:IPR004919(Protein of unknown function DUF262)|interpro:IPR011089(Protein of unknown function DUF1524 RloF)|refseq:NP_207423.1|ensemblbacteria:AAD07700(transcript)|ensemblbacteria:HP_0629(gene)|uniprotkb:O25346(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 rogid:xxyiy3+tiUnrmd9Ca469jTtteqA85962 intact-crc:515FE85CA5EFFEB3|rigid:v1zv9arqN8uvU9DjH7h3ITogTCc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25345 uniprotkb:O25790 intact:EBI-9264436|ensemblbacteria:AAD07699 intact:EBI-9261675|ensemblbacteria:AAD08226 psi-mi:o25345_helpy(display_long)|uniprotkb:HP_0628(locus name) psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335803|imex:IM-22256-1060 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR040239|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR006597(Sel1-like)|ensemblbacteria:AAD07699(transcript)|ensemblbacteria:HP_0628(gene)|go:"GO:0005576"(extracellular region)|go:"GO:0008800"(beta-lactamase activity)|go:"GO:0046677"(response to antibiotic)|uniprotkb:O25345(identity) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ySCA8mOk2pKmy4s5iHbcCGenuR885962 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 intact-crc:EC2287DBFA56A0CF|rigid:EqKtPKHqQfm2X74DHbcGqbByuHs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25983 uniprotkb:O25348 intact:EBI-9264349|ensemblbacteria:AAD08480 intact:EBI-9264487|ensemblbacteria:AAD07691 psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:o25348_helpy(display_long)|uniprotkb:HP_0631(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335839|imex:IM-22256-1062 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) refseq:WP_000499027.1|interpro:IPR001821([Ni-Fe]-hydrogenase, small subunit)|interpro:IPR006137(NADH ubiquinone oxidoreductase, 20 kDa subunit)|interpro:IPR006311(Twin-arginine translocation pathway signal)|interpro:IPR027394|refseq:NP_207425.1|interpro:IPR037024|interpro:IPR037148|ensemblbacteria:AAD07691(transcript)|ensemblbacteria:HP_0631(gene)|go:"GO:0008901"(ferredoxin hydrogenase activity)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0009375"(ferredoxin hydrogenase complex)|go:"GO:0016020"(membrane)|go:"GO:0044569"([Ni-Fe] hydrogenase complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|uniprotkb:O25348(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 rogid:xBsQN4ok3CaF4+mLyKGmXxLvBuI85962 intact-crc:31B43CAF70690038|rigid:O/rrDN4wii37qRR/EFUOI8DN050 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25356 uniprotkb:O25356 intact:EBI-7587122|intact:MINT-186968|ensemblbacteria:AAD07701 intact:EBI-7587122|intact:MINT-186968|ensemblbacteria:AAD07701 psi-mi:quec_helpy(display_long)|uniprotkb:7-cyano-7-carbaguanine synthase(gene name synonym)|uniprotkb:"PreQ(0) synthase"(gene name synonym)|uniprotkb:Queuosine biosynthesis protein QueC(gene name synonym)|uniprotkb:queC(gene name)|psi-mi:queC(display_short)|uniprotkb:HP_0639(locus name) psi-mi:quec_helpy(display_long)|uniprotkb:7-cyano-7-carbaguanine synthase(gene name synonym)|uniprotkb:"PreQ(0) synthase"(gene name synonym)|uniprotkb:Queuosine biosynthesis protein QueC(gene name synonym)|uniprotkb:queC(gene name)|psi-mi:queC(display_short)|uniprotkb:HP_0639(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335857|imex:IM-22256-1063 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000435648.1|mint:O25356|refseq:NP_207433.1|ensemblbacteria:AAD07701(transcript)|ensemblbacteria:HP_0639(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0016879"(ligase activity, forming carbon-nitrogen bonds)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR018317|dip:DIP-3566N|uniprotkb:O25356(identity) refseq:WP_000435648.1|mint:O25356|refseq:NP_207433.1|ensemblbacteria:AAD07701(transcript)|ensemblbacteria:HP_0639(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0016879"(ligase activity, forming carbon-nitrogen bonds)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR018317|dip:DIP-3566N|uniprotkb:O25356(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)" comment:mint|function:"Catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d/pwh5KxabOdjz5gbirFgcUmD0A85962 rogid:d/pwh5KxabOdjz5gbirFgcUmD0A85962 intact-crc:3FDFF1DB961A746C|rigid:lU2F+crOm4CYo15WN3FYgyrkxRE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34754 uniprotkb:O25357 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7692813|ensemblbacteria:AAD07702|intact:MINT-184096 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:o25357_helpy(display_long)|uniprotkb:HP_0640(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335875|imex:IM-22256-1064 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) refseq:WP_000462295.1|ensemblbacteria:AAD07702(transcript)|ensemblbacteria:HP_0640(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0006396"(RNA processing)|go:"GO:0016779"(nucleotidyltransferase activity)|interpro:IPR002646(Polynucleotide adenylyltransferase region)|interpro:IPR032828|interpro:IPR043519|mint:O25357|refseq:NP_207434.1|dip:DIP-3063N|uniprotkb:O25357(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:1g095l2vXA8D8piEE3ojVFRNLUc85962 intact-crc:9D071A2A8DA0AC23|rigid:29GCGJ/M0urcPq/+E5rCYKuMt9I false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25363 uniprotkb:Q9ZKK8 intact:EBI-9264580|ensemblbacteria:AAD07707 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25363_helpy(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:HP_0646(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335911|imex:IM-22256-1066 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000591482.1|interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|rcsb pdb:3JUJ|rcsb pdb:3JUK|refseq:NP_207440.1|interpro:IPR029044|ensemblbacteria:AAD07707(transcript)|ensemblbacteria:HP_0646(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process)|uniprotkb:O25363(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:S4xD5/rEUE7JDGNdKst64mNe6Uo85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:F2870E0459887B76|rigid:vrTxpOf4dFaTYcRcYdOMu/u/zuA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P55977 uniprotkb:O25362 intact:EBI-7723667|ensemblbacteria:AAD08555|intact:MINT-4077929 intact:EBI-7570599|intact:MINT-174744|ensemblbacteria:AAD07706 psi-mi:nusa_helpy(display_long)|uniprotkb:nusA(gene name)|psi-mi:nusA(display_short)|uniprotkb:HP_1514(locus name) psi-mi:o25362_helpy(display_long)|uniprotkb:HP_0645(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335893|imex:IM-22256-1065 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55977|ensemblbacteria:AAD08555(transcript)|ensemblbacteria:HP_1514(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0031564"(transcription antitermination)|interpro:IPR003029(S1, RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR010213(Transcription termination factor NusA)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013735(Transcription factor NusA, N-terminal)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR022967|interpro:IPR025249|interpro:IPR030842|interpro:IPR036555|refseq:WP_000411646.1|refseq:NP_208305.1|dip:DIP-3664N|uniprotkb:P55977(identity) refseq:WP_001210646.1|mint:O25362|refseq:NP_207439.1|ensemblbacteria:AAD07706(transcript)|ensemblbacteria:HP_0645(gene)|interpro:IPR008258(Lytic transglycosylase-like, catalytic)|interpro:IPR023346|dip:DIP-3509N|uniprotkb:O25362(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RTwa+hy08+YPTH/PON5T0ltkljM85962 rogid:VBS+UeLJtWQ8HJTPxLAA5EQSP1I85962 intact-crc:7E9E2531F5B99D81|rigid:8O7SZ9fdxyVj4Wy2nWZ51YRnyKg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25373 uniprotkb:P56033 intact:EBI-9264623|ensemblbacteria:AAD07729 intact:EBI-9264616|ensemblbacteria:AAD08347 psi-mi:o25373_helpy(display_long)|uniprotkb:HP_0659(locus name) psi-mi:rl5_helpy(display_long)|uniprotkb:rplE(gene name)|psi-mi:rplE(display_short)|uniprotkb:HP_1307(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335947|imex:IM-22256-1068 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001225999.1|interpro:IPR015391(SurA N-terminal domain)|interpro:IPR027304|refseq:NP_207453.1|ensemblbacteria:AAD07729(transcript)|ensemblbacteria:HP_0659(gene)|uniprotkb:O25373(identity) interpro:IPR031309|interpro:IPR031310|refseq:WP_000467399.1|interpro:IPR002132(Ribosomal protein L5)|interpro:IPR020929|interpro:IPR020930|interpro:IPR022803|refseq:NP_208099.1|ensemblbacteria:AAD08347(transcript)|ensemblbacteria:HP_1307(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56033(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:t8V5ySCFNHT2UfzZtyhAYnO6E2M85962 rogid:rYKq/K5k8tnmmiBofBDebQL9Hz885962 intact-crc:525E97B814EE84CF|rigid:YxJG29n18a5u417FmNrzWqYI48Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZN05 uniprotkb:O25363 intact:EBI-9264598|ensemblbacteria:AAD05639 intact:EBI-9264580|ensemblbacteria:AAD07707 psi-mi:q9zn05_helpj(display_long)|uniprotkb:jhp_0055(locus name) psi-mi:o25363_helpy(display_long)|uniprotkb:UDP-glucose pyrophosphorylase(gene name synonym)|uniprotkb:HP_0646(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335929|imex:IM-22256-1067 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD05639(transcript)|ensemblbacteria:jhp_0055(gene)|uniprotkb:Q9ZN05(identity) refseq:WP_000591482.1|interpro:IPR005771(UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type)|interpro:IPR005835(Nucleotidyl transferase)|rcsb pdb:3JUJ|rcsb pdb:3JUK|refseq:NP_207440.1|interpro:IPR029044|ensemblbacteria:AAD07707(transcript)|ensemblbacteria:HP_0646(gene)|go:"GO:0003983"("UTP:glucose-1-phosphate uridylyltransferase activity")|go:"GO:0006011"(UDP-glucose metabolic process)|go:"GO:0009058"(biosynthetic process)|uniprotkb:O25363(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:q1gOPf6G99EirqvWeAt1bWdK0Mc85963 rogid:S4xD5/rEUE7JDGNdKst64mNe6Uo85962 intact-crc:EE7FD123A0F25EF1|rigid:DkA99VA42S9BJdd2kZ570N3LApw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25385 uniprotkb:O25858 intact:EBI-7576246|intact:MINT-178240|ensemblbacteria:AAD07740 intact:EBI-9264668|ensemblbacteria:AAD08312 psi-mi:o25385_helpy(display_long)|uniprotkb:HP_0674(locus name) psi-mi:nuoi_helpy(display_long)|uniprotkb:nuoI(gene name)|psi-mi:nuoI(display_short)|uniprotkb:NADH dehydrogenase I subunit I(gene name synonym)|uniprotkb:NDH-1 subunit I(gene name synonym)|uniprotkb:HP_1268(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335983|imex:IM-22256-1070 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25385|ensemblbacteria:AAD07740(transcript)|ensemblbacteria:HP_0674(gene)|dip:DIP-3474N|uniprotkb:O25385(identity) refseq:WP_001118555.1|interpro:IPR010226(NADH-quinone oxidoreductase, chain I)|interpro:IPR017896|interpro:IPR017900|refseq:NP_208060.1|ensemblbacteria:AAD08312(transcript)|ensemblbacteria:HP_1268(gene)|go:"GO:0005506"(iron ion binding)|go:"GO:0009060"(aerobic respiration)|go:"GO:0045272"(plasma membrane respiratory chain complex I)|go:"GO:0048038"(quinone binding)|go:"GO:0050136"("NADH dehydrogenase (quinone) activity")|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|uniprotkb:O25858(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M9wDVY6YlJ0orcJ4wd1rvlNdB+o85962 rogid:NBTVgKr9aDepBiFHUZ3iO6zG25085962 intact-crc:25BA40847C979A95|rigid:njKXqN40iiI9OkshVNeKft5pQfs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25018 uniprotkb:O25385 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-7576246|intact:MINT-178240|ensemblbacteria:AAD07740 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o25385_helpy(display_long)|uniprotkb:HP_0674(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9335965|imex:IM-22256-1069 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) mint:O25385|ensemblbacteria:AAD07740(transcript)|ensemblbacteria:HP_0674(gene)|dip:DIP-3474N|uniprotkb:O25385(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:M9wDVY6YlJ0orcJ4wd1rvlNdB+o85962 intact-crc:B0B4FC598695D64F|rigid:G1r6Hfn1joOSPY1MvPSpl2DO+ZY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25408 uniprotkb:O25408 intact:EBI-7587215|intact:MINT-169712|ensemblbacteria:AAD07754 intact:EBI-7587215|intact:MINT-169712|ensemblbacteria:AAD07754 psi-mi:flgr_helpy(display_long)|uniprotkb:flgR(gene name)|psi-mi:flgR(display_short)|uniprotkb:HP_0703(locus name) psi-mi:flgr_helpy(display_long)|uniprotkb:flgR(gene name)|psi-mi:flgR(display_short)|uniprotkb:HP_0703(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336001|imex:IM-22256-1071 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000684509.1|mint:O25408|refseq:NP_207497.1|ensemblbacteria:AAD07754(transcript)|ensemblbacteria:HP_0703(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR027417|interpro:IPR029995|dip:DIP-3569N|uniprotkb:O25408(identity) refseq:WP_000684509.1|mint:O25408|refseq:NP_207497.1|ensemblbacteria:AAD07754(transcript)|ensemblbacteria:HP_0703(gene)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR027417|interpro:IPR029995|dip:DIP-3569N|uniprotkb:O25408(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yVGlhawBwA2BkqU+bcg60p3oOP485962 rogid:yVGlhawBwA2BkqU+bcg60p3oOP485962 intact-crc:4ED0EB8299D76F52|rigid:uqo4zpZK2CbTk58xHcoyTwztStA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25430 uniprotkb:O25245 intact:EBI-7554765|intact:MINT-174955|ensemblbacteria:AAD07789 intact:EBI-9264829|ensemblbacteria:AAD07580 psi-mi:o25430_helpy(display_long)|uniprotkb:HP_0730(locus name) psi-mi:o25245_helpy(display_long)|uniprotkb:HP_0504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336019|imex:IM-22256-1072 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000491700.1|mint:O25430|refseq:NP_207524.1|ensemblbacteria:AAD07789(transcript)|ensemblbacteria:HP_0730(gene)|dip:DIP-3385N|uniprotkb:O25430(identity) ensemblbacteria:AAD07580(transcript)|ensemblbacteria:HP_0504(gene)|uniprotkb:O25245(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uqQ/fuo9kUgqKnrhSuLasajkb6885962 rogid:OmW4837MeO5ViFwnKcsHURCKcgA85962 intact-crc:9311DA4B393F206A|rigid:BmjfD3xo9r21WfqQidxnudv0ZiI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25430 uniprotkb:Q9Z3A7 intact:EBI-7554765|intact:MINT-174955|ensemblbacteria:AAD07789 intact:EBI-9264847|ensemblbacteria:AAD06538|ensemblbacteria:AAD06883 psi-mi:o25430_helpy(display_long)|uniprotkb:HP_0730(locus name) psi-mi:q9z3a7_helpj(display_long)|uniprotkb:jhp_0958(locus name)|uniprotkb:jhp_1306(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336037|imex:IM-22256-1073 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000491700.1|mint:O25430|refseq:NP_207524.1|ensemblbacteria:AAD07789(transcript)|ensemblbacteria:HP_0730(gene)|dip:DIP-3385N|uniprotkb:O25430(identity) ensemblbacteria:AAD06538(transcript)|ensemblbacteria:AAD06883(transcript)|ensemblbacteria:jhp_0958(gene)|ensemblbacteria:jhp_1306(gene)|uniprotkb:Q9Z3A7(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uqQ/fuo9kUgqKnrhSuLasajkb6885962 rogid:UZGi2Zy3UKsAkuRx4SF2j3p2eak85963 intact-crc:D418C1956E7D2218|rigid:wVDquPLFvxVYXVtDgVPL4YW19Uc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25430 uniprotkb:Q9ZKK8 intact:EBI-7554765|intact:MINT-174955|ensemblbacteria:AAD07789 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25430_helpy(display_long)|uniprotkb:HP_0730(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336055|imex:IM-22256-1074 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000491700.1|mint:O25430|refseq:NP_207524.1|ensemblbacteria:AAD07789(transcript)|ensemblbacteria:HP_0730(gene)|dip:DIP-3385N|uniprotkb:O25430(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uqQ/fuo9kUgqKnrhSuLasajkb6885962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:ABAB1FE8DCEA87F3|rigid:eFHXNaeiB42tUyMbRhbFCdsIWRU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25448 uniprotkb:O25852 intact:EBI-7499990|intact:MINT-160305|ensemblbacteria:AAD07803 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 psi-mi:o25448_helpy(display_long)|uniprotkb:HP_0753(locus name) psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336073|imex:IM-22256-1075 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25448|refseq:WP_001199081.1|refseq:NP_207546.1|ensemblbacteria:AAD07803(transcript)|ensemblbacteria:HP_0753(gene)|go:"GO:0005829"(cytosol)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR003713(Flagellar protein FliS)|interpro:IPR036584|rcsb pdb:3IQC|rcsb pdb:3K1I|dip:DIP-3458N|uniprotkb:O25448(identity) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:cteyYkuK7MMhuLoDSwYpQRstj3U85962 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 intact-crc:DE461B4880A69F45|rigid:Nfc3DPIEdyrfs26WfYNOE2cPtuM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25094 uniprotkb:O25449 intact:EBI-7584994|intact:MINT-171400|ensemblbacteria:AAD07394 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:pseh_helpy(display_long)|uniprotkb:pseH(gene name)|psi-mi:pseH(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein H(gene name synonym)|uniprotkb:HP_0327(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336091|imex:IM-22256-1076 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25094|refseq:WP_000742697.1|refseq:NP_207125.1|ensemblbacteria:AAD07394(transcript)|ensemblbacteria:HP_0327(gene)|go:"GO:0008080"(N-acetyltransferase activity)|interpro:IPR000182(GCN5-related N-acetyltransferase)|interpro:IPR016181(Acyl-CoA N-acyltransferase)|interpro:IPR020036|rcsb pdb:4RI1|dip:DIP-3555N|uniprotkb:O25094(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uDBKnnI5LujCSAw9Z5WaulboR8Y85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:69CCDAF4D9FBCB00|rigid:fFxHA9aJhH32v+tej56/7M7hqwo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25449 uniprotkb:O25449 intact:EBI-9264991|ensemblbacteria:AAD07810 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336109|imex:IM-22256-1077 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:482C7F82D97F494C|rigid:sO9Ew09XmhpANUh3UKSz8he5f1w false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25940 uniprotkb:O25449 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336145|imex:IM-22256-1079 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:3D04C6D0189405B3|rigid:jJlBX7ZZ9gNr+rsp2/3mcRMfGC0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25581 uniprotkb:O25449 intact:EBI-7675108|ensemblbacteria:AAD07977|intact:MINT-177793 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:y924_helpy(display_long)|uniprotkb:HP_0924(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336127|imex:IM-22256-1078 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07977(transcript)|ensemblbacteria:HP_0924(gene)|go:"GO:0006725"(cellular aromatic compound metabolic process)|go:"GO:0016853"(isomerase activity)|interpro:IPR004370(4-oxalocrotonate tautomerase)|interpro:IPR014347(Tautomerase)|interpro:IPR018191|rcsb pdb:2ORM|rcsb pdb:3M21|mint:O25581|refseq:NP_207716.1|refseq:WP_001115881.1|dip:DIP-3525N|uniprotkb:O25581(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uTfgVa1jx934RIxFBjUfit8hmqU85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:F16DE741F642312C|rigid:noWjB8ZUzp1xtd7oNhdBfqcLBLM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25450 uniprotkb:O25669 intact:EBI-9265096|ensemblbacteria:AAD07804 intact:EBI-6415953|ensemblbacteria:AAD08067 psi-mi:o25450_helpy(display_long)|uniprotkb:HP_0755(locus name) psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336181|imex:IM-22256-1081 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001863447.1|interpro:IPR000594(UBA/THIF-type NAD/FAD binding fold)|refseq:NP_207548.1|interpro:IPR035985|ensemblbacteria:AAD07804(transcript)|ensemblbacteria:HP_0755(gene)|go:"GO:0008641"(ubiquitin-like modifier activating enzyme activity)|go:"GO:0061503"(tRNA threonylcarbamoyladenosine dehydratase)|go:"GO:0061504"(cyclic threonylcarbamoyladenosine biosynthetic process)|uniprotkb:O25450(identity) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JlAOcVOZK9K5E9jov+pIHeysKys85962 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 intact-crc:E83A176E78C3D188|rigid:TXqAVrh4CzaeGwTnGwduPDN+PHM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25983 uniprotkb:O25449 intact:EBI-9264349|ensemblbacteria:AAD08480 intact:EBI-9264991|ensemblbacteria:AAD07810 psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:o25449_helpy(display_long)|uniprotkb:HP_0754(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336163|imex:IM-22256-1080 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) refseq:WP_001087914.1|refseq:NP_207547.1|ensemblbacteria:AAD07810(transcript)|ensemblbacteria:HP_0754(gene)|uniprotkb:O25449(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 rogid:5c66ezFJd8haVLcVuonzm7+hFgQ85962 intact-crc:092215922D432D65|rigid:VlYApWzvVMkgQnwsEn8t6fLbyGc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25460 uniprotkb:O25495 intact:EBI-7582456|intact:MINT-161653|ensemblbacteria:AAD07814 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 psi-mi:o25460_helpy(display_long)|uniprotkb:HP_0765(locus name) psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336199|imex:IM-22256-1082 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25460|refseq:WP_000392451.1|refseq:NP_207558.1|ensemblbacteria:AAD07814(transcript)|ensemblbacteria:HP_0765(gene)|dip:DIP-3506N|uniprotkb:O25460(identity) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4aH/jdIEo9z9zYgpM6/NZt12WSI85962 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 intact-crc:0C06D04FBD1D75ED|rigid:DKuUB9VWI9TnRWE+Z6s+t5uimZQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24980 uniprotkb:O25462 intact:EBI-7552025|intact:MINT-165751|ensemblbacteria:AAD07248 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:psei_helpy(display_long)|uniprotkb:pseI(gene name)|psi-mi:pseI(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein I(gene name synonym)|uniprotkb:HP_0178(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336217|imex:IM-22256-1083 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941291.1|mint:O24980|refseq:NP_206977.1|ensemblbacteria:AAD07248(transcript)|ensemblbacteria:HP_0178(gene)|go:"GO:0016051"(carbohydrate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0047444"(N-acylneuraminate-9-phosphate synthase activity)|go:"GO:0070085"(glycosylation)|interpro:IPR006190(Antifreeze-like/N-acetylneuraminic acid synthase C-terminal)|interpro:IPR013132(N-acetylneuraminic acid synthase, N-terminal)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013974(SAF domain)|interpro:IPR020030|interpro:IPR036732|dip:DIP-3369N|uniprotkb:O24980(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uZp/YwItniAjhnfvNYjPS7d1M+U85962 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:60FFAB80B83497EB|rigid:zGDjyJTEgTXopPOgCCp1vK48h2M false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25018 uniprotkb:O25462 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336235|imex:IM-22256-1084 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:D4CEF873CBF75428|rigid:zajYayOwRcVdan/Cw4Iaxc+W3zM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25462 uniprotkb:O25265 intact:EBI-9265192|ensemblbacteria:AAD07827 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336253|imex:IM-22256-1085 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:EAE4C57458DB33BB|rigid:8k1P8/5tsHPs4mA4mIcAi9dcdmc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25495 uniprotkb:O25462 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336271|imex:IM-22256-1086 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:D04A57D2919AE8C1|rigid:7pZVjOBJU6TKji89oPQ3F5W8bqE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25546 uniprotkb:O25476 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-7536200|intact:MINT-187427|ensemblbacteria:AAD07831 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:o25476_helpy(display_long)|uniprotkb:HP_0787(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336307|imex:IM-22256-1088 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) mint:O25476|refseq:WP_001133691.1|refseq:NP_207580.1|ensemblbacteria:AAD07831(transcript)|ensemblbacteria:HP_0787(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044874"(lipoprotein localization to outer membrane)|go:"GO:0098797"(plasma membrane protein complex)|interpro:IPR003838(Protein of unknown function DUF214, permase predicted)|interpro:IPR025857|dip:DIP-3305N|uniprotkb:O25476(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:s8jLM/7kzobXKagh3+mqFuvEVnQ85962 intact-crc:26DDA463966F0917|rigid:Wt6eBje5yJ8kApWdcrkwVg5ViYk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZN32 uniprotkb:O25462 intact:EBI-9260158|ensemblbacteria:AAD05612 intact:EBI-9265192|ensemblbacteria:AAD07827 psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:o25462_helpy(display_long)|uniprotkb:HP_0767(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336289|imex:IM-22256-1087 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) ensemblbacteria:AAD07827(transcript)|ensemblbacteria:HP_0767(gene)|uniprotkb:O25462(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 rogid:OOZQlMdkdh7gwuMVPaJXqglFhB085962 intact-crc:AFF64849669C0359|rigid:NlUMD6lPXbfA4j2Ky2VRYXf9FlU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56132 uniprotkb:O25476 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-7536200|intact:MINT-187427|ensemblbacteria:AAD07831 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:o25476_helpy(display_long)|uniprotkb:HP_0787(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336325|imex:IM-22256-1089 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) mint:O25476|refseq:WP_001133691.1|refseq:NP_207580.1|ensemblbacteria:AAD07831(transcript)|ensemblbacteria:HP_0787(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044874"(lipoprotein localization to outer membrane)|go:"GO:0098797"(plasma membrane protein complex)|interpro:IPR003838(Protein of unknown function DUF214, permase predicted)|interpro:IPR025857|dip:DIP-3305N|uniprotkb:O25476(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:s8jLM/7kzobXKagh3+mqFuvEVnQ85962 intact-crc:B8BE32900EC0B455|rigid:GWW3WfL+zLZhGt806HBjHossqoA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25018 uniprotkb:O25488 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336343|imex:IM-22256-1090 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:33B2BD3AD84557BE|rigid:Qxmz9nJSxaB00+wFes+Nzs05EcQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25488 uniprotkb:O25488 intact:EBI-9263014|ensemblbacteria:AAD07855 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336361|imex:IM-22256-1091 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:1EE7D3C39FCA5AB5|rigid:HaW2Qnv4hTNG1PxEbCoTOPTnYeU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25490 uniprotkb:O06914 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336379|imex:IM-22256-1092 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:C6227FC6D9189F82|rigid:BmX98QsyZayEpRM6VaDU/Edxf+I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25490 uniprotkb:O34995 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336415|imex:IM-22256-1094 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:B439A0B292E3A810|rigid:C6D8xmguttNSpJHjmjeFxB18wIk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25490 uniprotkb:O25933 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336397|imex:IM-22256-1093 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 intact-crc:48AE8CF9C932C1C4|rigid:hZh4ZQWZSTnkI/l944iiDbOtJf4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25490 uniprotkb:Q9ZMH3 intact:EBI-7512856|intact:MINT-161495|ensemblbacteria:AAD07856 intact:EBI-9265592|ensemblbacteria:AAD05823 psi-mi:o25490_helpy(display_long)|uniprotkb:HP_0810(locus name) psi-mi:q9zmh3_helpj(display_long)|uniprotkb:jhp_0247(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336433|imex:IM-22256-1095 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001132760.1|mint:O25490|refseq:NP_207603.1|ensemblbacteria:AAD07856(transcript)|ensemblbacteria:HP_0810(gene)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0031167"(rRNA methylation)|interpro:IPR004398(Conserved hypothetical protein CHP00095)|interpro:IPR029063|dip:DIP-3495N|uniprotkb:O25490(identity) refseq:WP_010882505.1|interpro:IPR041551|ensemblbacteria:AAD05823(transcript)|ensemblbacteria:jhp_0247(gene)|uniprotkb:Q9ZMH3(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MH2ThNL7a/QWPV8Q1OA5YkRjEVA85962 rogid:bBvE/oCHqYoN/0oAcM3TD1stXro85963 intact-crc:40B0136AEEEBC880|rigid:Zn2Lw/53tRyCd1W6Ri0+4MVdmdY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25852 uniprotkb:O25492 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-9265613|ensemblbacteria:AAD07871 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25492_helpy(display_long)|uniprotkb:HP_0812(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336451|imex:IM-22256-1096 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) refseq:WP_001256047.1|interpro:IPR003788(Protein of unknown function DUF185)|refseq:NP_207605.1|interpro:IPR029063|interpro:IPR038375|ensemblbacteria:AAD07871(transcript)|ensemblbacteria:HP_0812(gene)|go:"GO:0035243"(protein-arginine omega-N symmetric methyltransferase activity)|uniprotkb:O25492(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:JnV+qvLuNMK31f2kER0EVA/f11Y85962 intact-crc:58BF0FF39E42245B|rigid:5pyUmDuFum2ZSVx757eyB5U2Evs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25494 uniprotkb:O25983 intact:EBI-9265631|ensemblbacteria:AAD07863 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25494_helpy(display_long)|uniprotkb:HP_0814(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336469|imex:IM-22256-1097 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000952609.1|interpro:IPR000594(UBA/THIF-type NAD/FAD binding fold)|refseq:NP_207607.1|interpro:IPR035985|ensemblbacteria:AAD07863(transcript)|ensemblbacteria:HP_0814(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0008641"(ubiquitin-like modifier activating enzyme activity)|go:"GO:0016021"(integral component of membrane)|go:"GO:0016779"(nucleotidyltransferase activity)|uniprotkb:O25494(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:pu8EtJtbrFabUjzacN4oH7+MxrE85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:3528CA40D06CFF98|rigid:ZAolsI00FOjxqmH011qmE6W/iD0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25495 uniprotkb:Q9ZKI0 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9265661|ensemblbacteria:AAD06537 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:q9zki0_helpj(display_long)|uniprotkb:jhp_0955(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336505|imex:IM-22256-1099 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD06537(transcript)|ensemblbacteria:jhp_0955(gene)|uniprotkb:Q9ZKI0(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:qVtLDPLjKL1Da6oe/FPOLK7FogE85963 intact-crc:4D62F06089B8B3EE|rigid:qw7GnE4SMAFLzePCVtvK+6Q0pcg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25281 uniprotkb:O25495 intact:EBI-7561260|intact:MINT-4065553|ensemblbacteria:AAD07621 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 psi-mi:o25281_helpy(display_long)|uniprotkb:HP_0555(locus name) psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336487|imex:IM-22256-1098 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000792823.1|mint:O25281|refseq:NP_207350.1|ensemblbacteria:AAD07621(transcript)|ensemblbacteria:HP_0555(gene)|uniprotkb:O25281(identity) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:j1Ircb978rDdJr0b+ERbTW6corQ85962 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 intact-crc:06D292FF82AF519E|rigid:rtowsVeSIxAwfBtd1O5Sdv5nW/M false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25310 uniprotkb:O25498 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-9262160|ensemblbacteria:AAD07873 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:o25498_helpy(display_long)|uniprotkb:HP_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336523|imex:IM-22256-1100 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) refseq:WP_000437145.1|refseq:NP_207613.1|ensemblbacteria:AAD07873(transcript)|ensemblbacteria:HP_0820(gene)|uniprotkb:O25498(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:cBhLCWEqc9/QdJfjtCvo7ltwdJs85962 intact-crc:1963306F405D7CBA|rigid:stzkTahb1dRlO+imgMobyWF/9jE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25638 uniprotkb:O25498 intact:EBI-7601848|intact:MINT-166704|ensemblbacteria:AAD08035 intact:EBI-9262160|ensemblbacteria:AAD07873 psi-mi:o25638_helpy(display_long)|uniprotkb:HP_0990(locus name) psi-mi:o25498_helpy(display_long)|uniprotkb:HP_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336541|imex:IM-22256-1101 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25638|ensemblbacteria:AAD08035(transcript)|ensemblbacteria:HP_0990(gene)|dip:DIP-3613N|uniprotkb:O25638(identity) refseq:WP_000437145.1|refseq:NP_207613.1|ensemblbacteria:AAD07873(transcript)|ensemblbacteria:HP_0820(gene)|uniprotkb:O25498(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rVJ82mdECNMncWYnxmuqK6CBT7w85962 rogid:cBhLCWEqc9/QdJfjtCvo7ltwdJs85962 intact-crc:296B2D8186D1B6B4|rigid:c4s4bRF4zJ8B/m4GQLhBLeHV9Rw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25501 uniprotkb:P56009 intact:EBI-9265727|ensemblbacteria:AAD07877 intact:EBI-9265742|ensemblbacteria:AAD08594 psi-mi:o25501_helpy(display_long)|uniprotkb:HP_0827(locus name) psi-mi:rs2_helpy(display_long)|uniprotkb:rpsB(gene name)|psi-mi:rpsB(display_short)|uniprotkb:HP_1554(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336559|imex:IM-22256-1102 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|refseq:WP_001244602.1|interpro:IPR000504(RNA recognition motif, RNP-1)|rcsb pdb:2KI2|refseq:NP_207620.1|interpro:IPR035979|ensemblbacteria:AAD07877(transcript)|ensemblbacteria:HP_0827(gene)|go:"GO:0003676"(nucleic acid binding)|uniprotkb:O25501(identity) refseq:WP_000258283.1|interpro:IPR001865(Ribosomal protein S2)|interpro:IPR005706(Ribosomal protein S2, bacterial-type)|interpro:IPR018130|interpro:IPR023591|refseq:NP_208345.1|ensemblbacteria:AAD08594(transcript)|ensemblbacteria:HP_1554(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|uniprotkb:P56009(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:sfNnYO/kc0ESmi/WSX9wb7PUfIA85962 rogid:OzIfZb6/oK3Wdm6uNucFtY2Kn+Y85962 intact-crc:60FFCC49EF32FFBC|rigid:iJ9TILr/QOHqDbyPdba5VScPgeU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25521 uniprotkb:O25519 intact:EBI-7503998|intact:MINT-161863|ensemblbacteria:AAD07898 intact:EBI-9265942|ensemblbacteria:AAD07897 psi-mi:o25521_helpy(display_long)|uniprotkb:HP_0850(locus name) psi-mi:o25519_helpy(display_long)|uniprotkb:HP_0848(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336577|imex:IM-22256-1103 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25521|refseq:WP_010875553.1|refseq:NP_207643.1|ensemblbacteria:AAD07898(transcript)|ensemblbacteria:HP_0850(gene)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|go:"GO:0009307"(DNA restriction-modification system)|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR003356(N-6 DNA methylase)|interpro:IPR004546(Restriction endonuclease, type I, EcoRI, M subunit)|interpro:IPR022749|interpro:IPR029063|interpro:IPR038333|go:"GO:0003677"(DNA binding)|dip:DIP-3358N|uniprotkb:O25521(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_207641.1|ensemblbacteria:AAD07897(transcript)|ensemblbacteria:HP_0848(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O25519(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3zNXyde6jJs8umSgKs89w8QFYrg85962 rogid:RPUVm8wh6OTcYujMRcjEMj8IrdE85962 intact-crc:F5DB5CDE1DD60352|rigid:nEnj75RNalT+/jq7OmLBkD+QPRA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25523 uniprotkb:Q9ZKK8 intact:EBI-7519279|intact:MINT-170179|ensemblbacteria:AAD07913 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25523_helpy(display_long)|uniprotkb:HP_0852(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336595|imex:IM-22256-1104 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25523|refseq:WP_000804194.1|refseq:NP_207645.1|ensemblbacteria:AAD07913(transcript)|ensemblbacteria:HP_0852(gene)|interpro:IPR007759(DNA-directed RNA polymerase delta subunit)|dip:DIP-3179N|uniprotkb:O25523(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bwLYnzFG2iFVDIRuBjwIbZtFIIs85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:63E933DEEB7601C4|rigid:4FvGonY+76t4K29dTYA6YSK3KhA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25533 uniprotkb:O25756 intact:EBI-528040|ensemblbacteria:AAD07916 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:coax_helpy(display_long)|uniprotkb:Pantothenic acid kinase(gene name synonym)|uniprotkb:PanK-III(gene name synonym)|uniprotkb:coaX(gene name)|psi-mi:coaX(display_short)|uniprotkb:coaA(gene name synonym)|uniprotkb:HP_0862(locus name) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336613|imex:IM-22256-1105 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207656.1|ensemblbacteria:AAD07916(transcript)|ensemblbacteria:HP_0862(gene)|go:"GO:0004594"(pantothenate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR004619(Bordetella pertussis Bvg accessory factor)|interpro:IPR043129|refseq:WP_001111589.1|mint:O25533|dip:DIP-3271N|uniprotkb:O25533(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AX3zdOAcOb24UaK7JJDR89lzKlI85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:4D29EF77593D2A19|rigid:uODS51eRRBsCR0wYPQqME1jYads false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25775 uniprotkb:O25533 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 intact:EBI-528040|ensemblbacteria:AAD07916 psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:coax_helpy(display_long)|uniprotkb:Pantothenic acid kinase(gene name synonym)|uniprotkb:PanK-III(gene name synonym)|uniprotkb:coaX(gene name)|psi-mi:coaX(display_short)|uniprotkb:coaA(gene name synonym)|uniprotkb:HP_0862(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336631|imex:IM-22256-1106 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) refseq:NP_207656.1|ensemblbacteria:AAD07916(transcript)|ensemblbacteria:HP_0862(gene)|go:"GO:0004594"(pantothenate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0015937"(coenzyme A biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR004619(Bordetella pertussis Bvg accessory factor)|interpro:IPR043129|refseq:WP_001111589.1|mint:O25533|dip:DIP-3271N|uniprotkb:O25533(identity) psi-mi:"MI:0469"(intact) function:May have metalloprotease activity|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 rogid:AX3zdOAcOb24UaK7JJDR89lzKlI85962 intact-crc:C9FBB1D27BB97671|rigid:Eq84+zp5M4iAG8d9mVF3G0ak2Dw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25538 uniprotkb:O25553 intact:EBI-7585008|intact:MINT-160800|ensemblbacteria:AAD07919 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 psi-mi:o25538_helpy(display_long)|uniprotkb:HP_0868(locus name) psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336649|imex:IM-22256-1107 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25538|refseq:WP_001154698.1|refseq:NP_207662.1|ensemblbacteria:AAD07919(transcript)|ensemblbacteria:HP_0868(gene)|dip:DIP-3554N|uniprotkb:O25538(identity) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M4igvNFEg0gj/fsP6z1GfvXnaqk85962 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 intact-crc:41E8C085C44B1D4F|rigid:K7Q22+H1jPglapOg0w2oOkXFW2g false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25538 uniprotkb:Q9ZN16 intact:EBI-7585008|intact:MINT-160800|ensemblbacteria:AAD07919 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:o25538_helpy(display_long)|uniprotkb:HP_0868(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336667|imex:IM-22256-1108 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25538|refseq:WP_001154698.1|refseq:NP_207662.1|ensemblbacteria:AAD07919(transcript)|ensemblbacteria:HP_0868(gene)|dip:DIP-3554N|uniprotkb:O25538(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M4igvNFEg0gj/fsP6z1GfvXnaqk85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:4D0C0DE4C43A337B|rigid:D2vezg45gLjyqw25/PvR7rt2YAc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25404 uniprotkb:O25544 intact:EBI-7513643|intact:MINT-161582|ensemblbacteria:AAD07749 intact:EBI-9261745|ensemblbacteria:AAD07925 psi-mi:o25404_helpy(display_long)|uniprotkb:HP_0697(locus name) psi-mi:ruvc_helpy(display_long)|uniprotkb:ruvC(gene name)|psi-mi:ruvC(display_short)|uniprotkb:Holliday junction nuclease RuvC(gene name synonym)|uniprotkb:Holliday junction resolvase RuvC(gene name synonym)|uniprotkb:HP_0877(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336685|imex:IM-22256-1109 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000245373.1|mint:O25404|refseq:NP_207491.1|ensemblbacteria:AAD07749(transcript)|ensemblbacteria:HP_0697(gene)|interpro:IPR016750(Acetone carboxylase, gamma subunit)|dip:DIP-3080N|uniprotkb:O25404(identity) refseq:WP_001221153.1|interpro:IPR002176(Crossover junction endodeoxyribonuclease RuvC)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR020563|refseq:NP_207671.1|interpro:IPR036397|ensemblbacteria:AAD07925(transcript)|ensemblbacteria:HP_0877(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0008821"(crossover junction endodeoxyribonuclease activity)|uniprotkb:O25544(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Nz0lqIBw5jbojgJfu5k2Gwt+P0E85962 rogid:OIge7ikZ0hjuU04ADq18nNHW2NM85962 intact-crc:C50805D48A50B21B|rigid:F8r5DHgOBRqO3DRkEoAGW9XozuQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25546 uniprotkb:O25265 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336703|imex:IM-22256-1110 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:865EA09B980B6555|rigid:aphLGsopHOpoo+e9340p4qkiuUk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34461 uniprotkb:O25546 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336721|imex:IM-22256-1111 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:E157A5BAB16E3EDE|rigid:1m81j3OwEDuHaznGWpH1arMFD0w false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P94846 uniprotkb:O25546 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336739|imex:IM-22256-1112 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:B93475AF318CC35B|rigid:Fx8VPhQfvfI7r163LeteQ+bUU54 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25553 uniprotkb:O06914 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336757|imex:IM-22256-1113 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:B02A6445A721E2B1|rigid:Uw+U16YvyQ21gmjZbCWFIBsYIkY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25553 uniprotkb:O25495 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336775|imex:IM-22256-1114 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 intact-crc:7F1F6087E1D89B26|rigid:JyNt1Unjl+02fKqpZKiFlfhdXYU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25940 uniprotkb:O25553 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336811|imex:IM-22256-1116 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 intact-crc:8A52B75C0B5539A0|rigid:K/migqaF/1Uw1QQQIOQAVXS9Uc4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25553 uniprotkb:O25553 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336793|imex:IM-22256-1115 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 intact-crc:A414CF2A6BE4B2E0|rigid:ExXme2OS70J62iLusB43bHUMzRM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24991 uniprotkb:O25578 intact:EBI-7525732|intact:MINT-165883|ensemblbacteria:AAD07263 intact:EBI-7676518|ensemblbacteria:AAD07964|intact:MINT-186577 psi-mi:lpxd_helpy(display_long)|uniprotkb:HP_0196(locus name)|uniprotkb:lpxD(gene name)|psi-mi:lpxD(display_short) psi-mi:y920_helpy(display_long)|uniprotkb:HP_0920(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336847|imex:IM-22256-1118 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24991|refseq:WP_000777041.1|refseq:NP_206995.1|ensemblbacteria:AAD07263(transcript)|ensemblbacteria:HP_0196(gene)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0016410"(N-acyltransferase activity)|interpro:IPR001451(Bacterial transferase hexapeptide repeat)|interpro:IPR007691(UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD)|interpro:IPR011004(Trimeric LpxA-like)|interpro:IPR020573|dip:DIP-3246N|uniprotkb:O24991(identity) go:"GO:0016021"(integral component of membrane)|interpro:IPR006214(Protein of unknown function UPF0005)|go:"GO:0005886"(plasma membrane)|ensemblbacteria:AAD07964(transcript)|ensemblbacteria:HP_0920(gene)|mint:O25578|refseq:NP_207712.1|refseq:WP_001240277.1|dip:DIP-3284N|uniprotkb:O25578(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QasheDoo1gV2p/HLISvtoewJ1Fg85962 rogid:K/CHOyGc9wP7wbFrkFvLx1Zkijk85962 intact-crc:93790F2941BBDD0C|rigid:FouUKS48oBdpaE4HudvYL4ewujA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25561 uniprotkb:Q9ZKW4 intact:EBI-9266457|ensemblbacteria:AAD07952 intact:EBI-9261600|ensemblbacteria:AAD06393 psi-mi:o25561_helpy(display_long)|uniprotkb:HP_0901(locus name) psi-mi:q9zkw4_helpj(display_long)|uniprotkb:jhp_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336829|imex:IM-22256-1117 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000973857.1|refseq:NP_207694.1|ensemblbacteria:AAD07952(transcript)|ensemblbacteria:HP_0901(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25561(identity) interpro:IPR002495(Glycosyl transferase, family 8)|interpro:IPR029044|ensemblbacteria:AAD06393(transcript)|ensemblbacteria:jhp_0820(gene)|go:"GO:0016757"(glycosyltransferase activity)|uniprotkb:Q9ZKW4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Zahcg9JPxlvvM5nGGoF/nfGlaKM85962 rogid:zzpEOeYpHTao8r++Ew1T+LCI5jA85963 intact-crc:707B46492BB0209F|rigid:4/ByoWN1ahupB7owe4wOfTmPdb4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25152 uniprotkb:O25606 intact:EBI-7496390|intact:MINT-160594|ensemblbacteria:AAD07456 intact:EBI-9260819|ensemblbacteria:AAD07996 psi-mi:chew_helpy(display_long)|uniprotkb:cheW(gene name)|psi-mi:cheW(display_short)|uniprotkb:HP_0391(locus name) psi-mi:o25606_helpy(display_long)|uniprotkb:HP_0952(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336865|imex:IM-22256-1119 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25152|refseq:NP_207189.1|ensemblbacteria:AAD07456(transcript)|ensemblbacteria:HP_0391(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|interpro:IPR002545(CheW-like protein)|interpro:IPR036061|interpro:IPR039315|refseq:WP_000070768.1|dip:DIP-3415N|uniprotkb:O25152(identity) refseq:WP_000669256.1|interpro:IPR008136(CinA, C-terminal)|refseq:NP_207744.1|interpro:IPR036653|ensemblbacteria:AAD07996(transcript)|ensemblbacteria:HP_0952(gene)|uniprotkb:O25606(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O7EjQcJzkk6XzC/nFhA90P9kgjQ85962 rogid:s8fk+afTe93cG0B77Mk3AdeOLvk85962 intact-crc:FF840F30894C19C7|rigid:2D6nP/v3HsLX3cLUXtxI5SkgNWs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25998 uniprotkb:O25612 intact:EBI-7601350|intact:MINT-172739|ensemblbacteria:AAD08504 intact:EBI-7600058|intact:MINT-162426|ensemblbacteria:AAD08008 psi-mi:o25998_helpy(display_long)|uniprotkb:HP_1462(locus name) psi-mi:o25612_helpy(display_long)|uniprotkb:HP_0958(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336883|imex:IM-22256-1120 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25998|refseq:WP_001873459.1|refseq:NP_208253.1|ensemblbacteria:AAD08504(transcript)|ensemblbacteria:HP_1462(gene)|interpro:IPR005184(Protein of unknown function DUF306, Meta and HslJ)|interpro:IPR038670|dip:DIP-3605N|uniprotkb:O25998(identity) mint:O25612|refseq:WP_001091835.1|refseq:NP_207750.1|ensemblbacteria:AAD08008(transcript)|ensemblbacteria:HP_0958(gene)|interpro:IPR003743(Protein of unknown function DUF164)|dip:DIP-3603N|uniprotkb:O25612(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:vK+Q4OfYKb4A7hIchwzYE/DJkvI85962 rogid:tWI0I/tYQqF2LtrYMytSDaeGEH085962 intact-crc:5FC0AEBEE99A8A3F|rigid:tWFAN0bzwq/wCHohd1MQX7wySro false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25612 uniprotkb:Q9ZKK8 intact:EBI-7600058|intact:MINT-162426|ensemblbacteria:AAD08008 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25612_helpy(display_long)|uniprotkb:HP_0958(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336901|imex:IM-22256-1121 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25612|refseq:WP_001091835.1|refseq:NP_207750.1|ensemblbacteria:AAD08008(transcript)|ensemblbacteria:HP_0958(gene)|interpro:IPR003743(Protein of unknown function DUF164)|dip:DIP-3603N|uniprotkb:O25612(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tWI0I/tYQqF2LtrYMytSDaeGEH085962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:83B648BEEADCB1C5|rigid:xHKyGRhPZFDm2uZ2vubSh5j0nfo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25612 uniprotkb:Q9ZN32 intact:EBI-7600058|intact:MINT-162426|ensemblbacteria:AAD08008 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25612_helpy(display_long)|uniprotkb:HP_0958(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336919|imex:IM-22256-1122 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25612|refseq:WP_001091835.1|refseq:NP_207750.1|ensemblbacteria:AAD08008(transcript)|ensemblbacteria:HP_0958(gene)|interpro:IPR003743(Protein of unknown function DUF164)|dip:DIP-3603N|uniprotkb:O25612(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tWI0I/tYQqF2LtrYMytSDaeGEH085962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:E65127CE88E2E4B7|rigid:Sdf+IW6ob0bvyt26QvdVpiL3B1w false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25626 uniprotkb:O24921 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-9260837|ensemblbacteria:AAD07170 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:o24921_helpy(display_long)|uniprotkb:HP_0095(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336955|imex:IM-22256-1124 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) refseq:WP_001125803.1|refseq:NP_206895.1|ensemblbacteria:AAD07170(transcript)|ensemblbacteria:HP_0095(gene)|uniprotkb:O24921(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:u3bQBXJwbeu7kteqTqCQ4QqbviM85962 intact-crc:794F2DC3BEF73778|rigid:E4JLg+aKxyXOSqoPzDXSOUfW3Ec false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56120 uniprotkb:O25620 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9266673|ensemblbacteria:AAD08011 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:vad2_helpy(display_long)|uniprotkb:Virulence-associated protein D homolog(gene name synonym)|uniprotkb:HP_0967(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336937|imex:IM-22256-1123 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) refseq:WP_000271456.1|interpro:IPR016368(Virulence-associated protein D)|interpro:IPR019199|refseq:NP_207759.1|ensemblbacteria:AAD08011(transcript)|ensemblbacteria:HP_0967(gene)|go:"GO:0004518"(nuclease activity)|uniprotkb:O25620(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:YJHiTI3hulsAfeq8tD3iLZ6Kd2o85962 intact-crc:D71ACFA04D8572D6|rigid:Ios+d9TsngA6MZRT09dZk+YinJk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25626 uniprotkb:O24926 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-7494854|intact:MINT-159805|ensemblbacteria:AAD07168 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:queh_helpy(display_long)|uniprotkb:Queuosine biosynthesis protein QueH(gene name synonym)|uniprotkb:HP_0100(locus name)|uniprotkb:queH(gene name)|psi-mi:queH(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336973|imex:IM-22256-1125 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) mint:O24926|refseq:NP_206900.1|refseq:WP_000905219.1|ensemblbacteria:AAD07168(transcript)|ensemblbacteria:HP_0100(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0052693"(epoxyqueuosine reductase activity)|interpro:IPR003828(Protein of unknown function DUF208)|dip:DIP-3170N|uniprotkb:O24926(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:Wq9kyscW1vuBxHL6xNZc6vRBdys85962 intact-crc:C3BCE6AA5D3C5E9B|rigid:DaPz377uwV2EDW84HSK71jc9FEg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25626 uniprotkb:O25296 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-9264240|ensemblbacteria:AAD07640 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:apt_helpy(display_long)|uniprotkb:apt(gene name)|psi-mi:apt(display_short)|uniprotkb:HP_0572(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9336991|imex:IM-22256-1126 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) refseq:WP_001006135.1|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR005764(Adenine phosphoribosyl transferase)|refseq:NP_207367.1|interpro:IPR029057|ensemblbacteria:AAD07640(transcript)|ensemblbacteria:HP_0572(gene)|go:"GO:0002055"(adenine binding)|go:"GO:0003999"(adenine phosphoribosyltransferase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006166"(purine ribonucleoside salvage)|go:"GO:0006168"(adenine salvage)|go:"GO:0016208"(AMP binding)|go:"GO:0044209"(AMP salvage)|uniprotkb:O25296(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:/dZ4MOTpTw+nT9QG8pJr3NC1h4E85962 intact-crc:92EE7BE6865042F0|rigid:T7bq8Jm3MuuxSSXUuAmSiw7OmiA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25626 uniprotkb:O25423 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337009|imex:IM-22256-1127 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:1324CB1DE6B31990|rigid:ECLOEfvGk2Q+6p7KGgPcwOKVmX0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25626 uniprotkb:O25553 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337027|imex:IM-22256-1128 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 intact-crc:2FA8F6F0CC9E44BA|rigid:UcSKJN/W+HHKEThZgZObTVqAW1A false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25592 uniprotkb:O25626 intact:EBI-7598036|intact:MINT-162023|ensemblbacteria:AAD07991 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 psi-mi:o25592_helpy(display_long)|uniprotkb:HP_0938(locus name) psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337063|imex:IM-22256-1130 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25592|refseq:WP_001862937.1|refseq:NP_207730.1|ensemblbacteria:AAD07991(transcript)|ensemblbacteria:HP_0938(gene)|interpro:IPR004919(Protein of unknown function DUF262)|dip:DIP-3591N|uniprotkb:O25592(identity) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ge8BhFYAGSLIpx+GRPzWkRXRKgQ85962 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 intact-crc:CCC71E2F14369B62|rigid:bRESvigMn4m36THsnRxWS/Yroec false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25626 uniprotkb:O25567 intact:EBI-7506726|intact:MINT-4059238|ensemblbacteria:AAD08021 intact:EBI-7594166|intact:MINT-164078|ensemblbacteria:AAD07959 psi-mi:gatc_helpy(display_long)|uniprotkb:gatC(gene name)|psi-mi:gatC(display_short)|uniprotkb:HP_0975(locus name) psi-mi:o25567_helpy(display_long)|uniprotkb:HP_0909(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337045|imex:IM-22256-1129 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25626|refseq:WP_001165207.1|refseq:NP_207766.1|interpro:IPR003837(Glu-tRNAGln amidotransferase, C subunit)|ensemblbacteria:AAD08021(transcript)|ensemblbacteria:HP_0975(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006412"(translation)|go:"GO:0006450"(regulation of translational fidelity)|go:"GO:0050566"("asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity")|go:"GO:0050567"("glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity")|interpro:IPR036113|uniprotkb:O25626(identity) refseq:WP_000613266.1|mint:O25567|refseq:NP_207701.1|ensemblbacteria:AAD07959(transcript)|ensemblbacteria:HP_0909(gene)|dip:DIP-3581N|uniprotkb:O25567(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d6tvZ3EtX4usZuHkWIOEylgVObk85962 rogid:ENgoOYqZmKL3kxMn3EAQ0bb/kIU85962 intact-crc:DC63930EC62BBAB0|rigid:Zf1i0xtMMMwf2IdxQ3elv8Uqe8w false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25769 uniprotkb:O25633 intact:EBI-7500041|intact:MINT-169612|ensemblbacteria:AAD08203 intact:EBI-7495815|intact:MINT-174294|ensemblbacteria:AAD08029 psi-mi:fliw1_helpy(display_long)|uniprotkb:HP_1154(locus name)|uniprotkb:fliW1(gene name)|psi-mi:fliW1(display_short) psi-mi:o25633_helpy(display_long)|uniprotkb:HP_0983(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337081|imex:IM-22256-1131 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25769|refseq:WP_001105854.1|refseq:NP_207945.1|ensemblbacteria:AAD08203(transcript)|ensemblbacteria:HP_1154(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|dip:DIP-3307N|uniprotkb:O25769(identity) mint:O25633|refseq:NP_207774.1|ensemblbacteria:AAD08029(transcript)|ensemblbacteria:HP_0983(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0055085"(transmembrane transport)|interpro:IPR006685(Mechanosensitive ion channel MscS)|interpro:IPR010920(Like-Sm ribonucleoprotein-related, core)|interpro:IPR011014(Mechanosensitive ion channel MscS, transmembrane-2)|interpro:IPR011066(Mechanosensitive ion channel MscS, C-terminal)|interpro:IPR023408|refseq:WP_000343415.1|dip:DIP-3212N|uniprotkb:O25633(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:akwR8LvQZuOb1rNt4vqG2NubfHU85962 rogid:6FILqK8HFSI/r55Ob6NphKLnd0U85962 intact-crc:97175238A90173F7|rigid:4iLtz8KspX2CI6fU+YhlXPmlhHE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25633 uniprotkb:O25938 intact:EBI-7495815|intact:MINT-174294|ensemblbacteria:AAD08029 intact:EBI-9266908|ensemblbacteria:AAD08430 psi-mi:o25633_helpy(display_long)|uniprotkb:HP_0983(locus name) psi-mi:o25938_helpy(display_long)|uniprotkb:HP_1388(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337099|imex:IM-22256-1132 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25633|refseq:NP_207774.1|ensemblbacteria:AAD08029(transcript)|ensemblbacteria:HP_0983(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0055085"(transmembrane transport)|interpro:IPR006685(Mechanosensitive ion channel MscS)|interpro:IPR010920(Like-Sm ribonucleoprotein-related, core)|interpro:IPR011014(Mechanosensitive ion channel MscS, transmembrane-2)|interpro:IPR011066(Mechanosensitive ion channel MscS, C-terminal)|interpro:IPR023408|refseq:WP_000343415.1|dip:DIP-3212N|uniprotkb:O25633(identity) refseq:WP_001862625.1|refseq:NP_208179.1|ensemblbacteria:AAD08430(transcript)|ensemblbacteria:HP_1388(gene)|uniprotkb:O25938(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6FILqK8HFSI/r55Ob6NphKLnd0U85962 rogid:lD4BCbeqG3Vu7n2+k431kkKoWTU85962 intact-crc:37AD293F4CF12243|rigid:alzsY2DB0FYzNzUmNQLv/FqWJeE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25640 uniprotkb:O25488 intact:EBI-9266929|ensemblbacteria:AAD08037 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:o25640_helpy(display_long)|uniprotkb:HP_0992(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337117|imex:IM-22256-1133 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08037(transcript)|ensemblbacteria:HP_0992(gene)|uniprotkb:O25640(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UvcLcS8TflkrHlHBZ7x5T9Qxlo485962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:5FA4507E9E54D544|rigid:U+LdVftDcwXp7G/+SaxubiWf8Jw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25495 uniprotkb:O25640 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-9266929|ensemblbacteria:AAD08037 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o25640_helpy(display_long)|uniprotkb:HP_0992(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337135|imex:IM-22256-1134 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) ensemblbacteria:AAD08037(transcript)|ensemblbacteria:HP_0992(gene)|uniprotkb:O25640(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:UvcLcS8TflkrHlHBZ7x5T9Qxlo485962 intact-crc:EEE724BD2D9016F7|rigid:sx0kFvJkYwVII9+IYkYMa0HUQBk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25640 uniprotkb:O25676 intact:EBI-9266929|ensemblbacteria:AAD08037 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:o25640_helpy(display_long)|uniprotkb:HP_0992(locus name) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337153|imex:IM-22256-1135 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08037(transcript)|ensemblbacteria:HP_0992(gene)|uniprotkb:O25640(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UvcLcS8TflkrHlHBZ7x5T9Qxlo485962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:D5BDC0D3D90C970F|rigid:f+6psbAaIn1M5I9HR3gz7hudSJQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25553 uniprotkb:O25644 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-7494357|intact:MINT-175438|ensemblbacteria:AAD08046 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25644_helpy(display_long)|uniprotkb:HP_0996(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337171|imex:IM-22256-1136 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) mint:O25644|refseq:NP_207787.1|refseq:WP_010875578.1|ensemblbacteria:AAD08046(transcript)|ensemblbacteria:HP_0996(gene)|dip:DIP-3237N|uniprotkb:O25644(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:jukREQtBXBcPiaibDlEkfEtW0ds85962 intact-crc:B898E69402A8FF60|rigid:dvKAz951+Ehpr7YT+Krzs91rkME false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25679 uniprotkb:O25644 intact:EBI-7504443|intact:MINT-179903|ensemblbacteria:AAD08078 intact:EBI-7494357|intact:MINT-175438|ensemblbacteria:AAD08046 psi-mi:flhf_helpy(display_long)|uniprotkb:HP_1035(locus name)|uniprotkb:flhF(gene name)|psi-mi:flhF(display_short)|uniprotkb:Flagella-associated GTP-binding protein(gene name synonym) psi-mi:o25644_helpy(display_long)|uniprotkb:HP_0996(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337189|imex:IM-22256-1137 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25679|refseq:NP_207825.1|refseq:WP_000238399.1|ensemblbacteria:AAD08078(transcript)|ensemblbacteria:HP_1035(gene)|go:"GO:0003924"(GTPase activity)|go:"GO:0005047"(signal recognition particle binding)|go:"GO:0005525"(GTP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006605"(protein targeting)|go:"GO:0006614"(SRP-dependent cotranslational protein targeting to membrane)|go:"GO:0016020"(membrane)|go:"GO:0044781"(bacterial-type flagellum organization)|interpro:IPR000897(Signal recognition particle, SRP54 subunit, GTPase)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR020006|interpro:IPR027417|dip:DIP-3259N|uniprotkb:O25679(identity) mint:O25644|refseq:NP_207787.1|refseq:WP_010875578.1|ensemblbacteria:AAD08046(transcript)|ensemblbacteria:HP_0996(gene)|dip:DIP-3237N|uniprotkb:O25644(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:14+AfdHCUm8JtDyk14sYWINIKMU85962 rogid:jukREQtBXBcPiaibDlEkfEtW0ds85962 intact-crc:A1686310869261EA|rigid:42NsTf33ptUwyogsjSQ60jRTcZ8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25423 uniprotkb:O25649 intact:EBI-9260274|ensemblbacteria:AAD07777 intact:EBI-9260700|ensemblbacteria:AAD08050 psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337207|imex:IM-22256-1138 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 intact-crc:79DAE05C85DE8A01|rigid:UzT47HuiWuUyoo4U5HLTKHnClVY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25553 uniprotkb:O25649 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-9260700|ensemblbacteria:AAD08050 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337225|imex:IM-22256-1139 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 intact-crc:4556DDB1AFF3D72B|rigid:4XWzKeR57F7uyCw57TV758Lani8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25649 uniprotkb:O25938 intact:EBI-9260700|ensemblbacteria:AAD08050 intact:EBI-9266908|ensemblbacteria:AAD08430 psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:o25938_helpy(display_long)|uniprotkb:HP_1388(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337243|imex:IM-22256-1140 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) refseq:WP_001862625.1|refseq:NP_208179.1|ensemblbacteria:AAD08430(transcript)|ensemblbacteria:HP_1388(gene)|uniprotkb:O25938(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 rogid:lD4BCbeqG3Vu7n2+k431kkKoWTU85962 intact-crc:7AB9431DBB8B00B4|rigid:wHtFPJCm2VqJxuHm3XFU/2xtIK4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25940 uniprotkb:O25649 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-9260700|ensemblbacteria:AAD08050 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:o25649_helpy(display_long)|uniprotkb:HP_1003(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337261|imex:IM-22256-1141 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) ensemblbacteria:AAD08050(transcript)|ensemblbacteria:HP_1003(gene)|uniprotkb:O25649(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:lPXIx3G71u7jsNI/b/dDn5RLDwo85962 intact-crc:F4C95A9C9F092934|rigid:aghy1KrYQRII4FtBcOEatdbKD3g false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25666 uniprotkb:O06914 intact:EBI-9267085|ensemblbacteria:AAD08070 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25666_helpy(display_long)|uniprotkb:HP_1022(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337279|imex:IM-22256-1142 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000556224.1|interpro:IPR002421(5'-3' exonuclease)|interpro:IPR008918(Helix-hairpin-helix motif, class 2)|interpro:IPR020046|refseq:NP_207812.1|interpro:IPR029060|interpro:IPR036279|ensemblbacteria:AAD08070(transcript)|ensemblbacteria:HP_1022(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003824"(catalytic activity)|uniprotkb:O25666(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:twnySVs04F5X07K8nA4MCAGjRuo85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:8EC41A8D4B9D889C|rigid:rddSJ6js9HklarDVXS5ItAGhabs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25669 uniprotkb:O25669 intact:EBI-6415953|ensemblbacteria:AAD08067 intact:EBI-6415953|ensemblbacteria:AAD08067 psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:o25669_helpy(display_long)|uniprotkb:HP_1025(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337297|imex:IM-22256-1143 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) ensemblbacteria:AAD08067(transcript)|ensemblbacteria:HP_1025(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0042802"(identical protein binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|mint:O25669|refseq:NP_207815.1|refseq:WP_000332994.1|dip:DIP-3600N|uniprotkb:O25669(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 rogid:MGE8ilIXIfRtyyuiIIBXhf/Kb0k85962 intact-crc:A5B1BC5C88B98378|rigid:gBp3A0eHkbAX02pn0FEldLd87SI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25676 uniprotkb:O25265 intact:EBI-527933|ensemblbacteria:AAD08076 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337317|imex:IM-22256-1144 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:9374BA0476C7B4EC|rigid:IwtgSmeblA5WOcAUvMU35PLY1JQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24873 uniprotkb:O25684 intact:EBI-7493488|intact:MINT-163255|ensemblbacteria:AAD07107 intact:EBI-9267313|ensemblbacteria:AAD08088 psi-mi:o24873_helpy(display_long)|uniprotkb:HP_0030(locus name) psi-mi:o25684_helpy(display_long)|uniprotkb:HP_1043(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337335|imex:IM-22256-1145 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24873|refseq:NP_206832.1|refseq:WP_000926158.1|ensemblbacteria:AAD07107(transcript)|ensemblbacteria:HP_0030(gene)|dip:DIP-3499N|uniprotkb:O24873(identity) refseq:WP_001264982.1|interpro:IPR039420|interpro:IPR036388|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|rcsb pdb:2PLN|refseq:NP_207833.1|ensemblbacteria:AAD08088(transcript)|ensemblbacteria:HP_1043(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|uniprotkb:O25684(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/WA2RxKnmOtAZF3txrMosHKaCn085962 rogid:yC68Rj5sMfcts8ZYcM3ryOKmo6U85962 intact-crc:1E46C42020BF7563|rigid:nmF99qb2RxBMYmSywsJcAUWB0tU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56044 uniprotkb:O25684 intact:EBI-9261001|ensemblbacteria:AAD08191 intact:EBI-9267313|ensemblbacteria:AAD08088 psi-mi:rl19_helpy(display_long)|uniprotkb:rplS(gene name)|psi-mi:rplS(display_short)|uniprotkb:HP_1147(locus name) psi-mi:o25684_helpy(display_long)|uniprotkb:HP_1043(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337353|imex:IM-22256-1146 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000797699.1|interpro:IPR001857(Ribosomal protein L19)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR018257|refseq:NP_207938.1|interpro:IPR038657|ensemblbacteria:AAD08191(transcript)|ensemblbacteria:HP_1147(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56044(identity) refseq:WP_001264982.1|interpro:IPR039420|interpro:IPR036388|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|rcsb pdb:2PLN|refseq:NP_207833.1|ensemblbacteria:AAD08088(transcript)|ensemblbacteria:HP_1043(gene)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0005829"(cytosol)|go:"GO:0032993"(protein-DNA complex)|uniprotkb:O25684(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nSldGvsSYOnzUDqkFrp6p2IdgB485962 rogid:yC68Rj5sMfcts8ZYcM3ryOKmo6U85962 intact-crc:F3F7DEC384931241|rigid:JTe41risR7Q1OnG6BH+yakXV1a4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25686 uniprotkb:O25756 intact:EBI-7493806|intact:MINT-164557|ensemblbacteria:AAD08090 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:acsa_helpy(display_long)|uniprotkb:acsA(gene name)|psi-mi:acsA(display_short)|uniprotkb:acs(gene name synonym)|uniprotkb:HP_1045(locus name)|uniprotkb:Acetate--CoA ligase(gene name synonym)|uniprotkb:Acyl-activating enzyme(gene name synonym) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337371|imex:IM-22256-1147 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25686|refseq:NP_207835.1|refseq:WP_001175410.1|ensemblbacteria:AAD08090(transcript)|ensemblbacteria:HP_1045(gene)|go:"GO:0003987"(acetate-CoA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0016208"(AMP binding)|go:"GO:0019427"(acetyl-CoA biosynthetic process from acetate)|go:"GO:0046872"(metal ion binding)|interpro:IPR000873(AMP-dependent synthetase and ligase)|interpro:IPR011904(Acetate--CoA ligase)|interpro:IPR020845|interpro:IPR025110|interpro:IPR032387|interpro:IPR042099|dip:DIP-3168N|uniprotkb:O25686(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:EdYW+cpZXBFSCCV6Lx/T0aRT5qQ85962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:539EA933752ABE35|rigid:qddUoRq1fceyQ/Rsal2VZVlcIoQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25703 uniprotkb:O25488 intact:EBI-7731853|ensemblbacteria:AAD08103|intact:MINT-178328 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:rsmg_helpy(display_long)|uniprotkb:HP_1063(locus name)|uniprotkb:16S rRNA 7-methylguanosine methyltransferase(gene name synonym)|uniprotkb:rsmG(gene name)|psi-mi:rsmG(display_short) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337389|imex:IM-22256-1148 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25703|ensemblbacteria:AAD08103(transcript)|ensemblbacteria:HP_1063(gene)|go:"GO:0005829"(cytosol)|go:"GO:0070043"("rRNA (guanine-N7-)-methyltransferase activity")|interpro:IPR003682(Glucose inhibited division protein)|interpro:IPR029063|refseq:WP_001068828.1|refseq:NP_207854.1|dip:DIP-3515N|uniprotkb:O25703(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Probable S-adenosyl-L-methionine dependent methyltransferase specific for a sterol and/or lipid substrate - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UyDSkNX+Z2KVGFE5C/PRIkQpR5Q85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:8FEA41A292C283E4|rigid:ldlelcT7pFO4YpUAwaaCoUzJzps false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25709 uniprotkb:O25446 intact:EBI-7608416|intact:MINT-160299|ensemblbacteria:AAD08123 intact:EBI-7493854|intact:MINT-164516|ensemblbacteria:AAD07802 psi-mi:o25709_helpy(display_long)|uniprotkb:HP_1076(locus name) psi-mi:o25446_helpy(display_long)|uniprotkb:HP_0750(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337407|imex:IM-22256-1149 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000353458.1|mint:O25709|refseq:NP_207867.1|ensemblbacteria:AAD08123(transcript)|ensemblbacteria:HP_1076(gene)|interpro:IPR032411|interpro:IPR038315|rcsb pdb:3K1H|rcsb pdb:3K1I|rcsb pdb:6LEA|dip:DIP-3285N|uniprotkb:O25709(identity) mint:O25446|refseq:NP_207543.1|refseq:WP_000277334.1|ensemblbacteria:AAD07802(transcript)|ensemblbacteria:HP_0750(gene)|interpro:IPR011055(Duplicated hybrid motif)|interpro:IPR016047(Peptidase M23)|dip:DIP-3312N|uniprotkb:O25446(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:fMWebz6r3muf3EEFKm1/6dzsdZo85962 rogid:YHQbJlaPCQfqcXV6yHl68EepjeQ85962 intact-crc:90CCB4CE1F5E3645|rigid:hbX5y6w4ETgrur65QD310E2oI6I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25272 uniprotkb:O25718 intact:EBI-7651076|ensemblbacteria:AAD07605|intact:MINT-161915 intact:EBI-7735728|ensemblbacteria:AAD08129|intact:MINT-164771 psi-mi:o25272_helpy(display_long)|uniprotkb:HP_0539(locus name) psi-mi:o25718_helpy(display_long)|uniprotkb:HP_1086(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337425|imex:IM-22256-1150 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25272|ensemblbacteria:AAD07605(transcript)|ensemblbacteria:HP_0539(gene)|rcsb pdb:3ZCI|rcsb pdb:3ZCJ|rcsb pdb:4CII|rcsb pdb:4X5U|refseq:NP_207335.1|refseq:WP_000855299.1|dip:DIP-3544N|uniprotkb:O25272(identity) go:"GO:0006364"(rRNA processing)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR002877(Ribosomal RNA methyltransferase RrmJ/FtsJ)|interpro:IPR002942(RNA-binding S4)|interpro:IPR004538(Haemolysin A)|interpro:IPR029063|interpro:IPR036986|mint:O25718|ensemblbacteria:AAD08129(transcript)|ensemblbacteria:HP_1086(gene)|go:"GO:0003723"(RNA binding)|refseq:WP_001235220.1|refseq:NP_207877.1|dip:DIP-3649N|uniprotkb:O25718(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nQvUcaMFjvL0wOk4hyIagpwGQ5s85962 rogid:Q/HgyXZMgeTwTPGamvt3/pp74ac85962 intact-crc:5F58FF4026FC2ACE|rigid:So32fL8fzSH35xzT9/MtLwhu5gc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25718 uniprotkb:Q9ZKJ9 intact:EBI-7735728|ensemblbacteria:AAD08129|intact:MINT-164771 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:o25718_helpy(display_long)|uniprotkb:HP_1086(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337443|imex:IM-22256-1151 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0006364"(rRNA processing)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|interpro:IPR002877(Ribosomal RNA methyltransferase RrmJ/FtsJ)|interpro:IPR002942(RNA-binding S4)|interpro:IPR004538(Haemolysin A)|interpro:IPR029063|interpro:IPR036986|mint:O25718|ensemblbacteria:AAD08129(transcript)|ensemblbacteria:HP_1086(gene)|go:"GO:0003723"(RNA binding)|refseq:WP_001235220.1|refseq:NP_207877.1|dip:DIP-3649N|uniprotkb:O25718(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Q/HgyXZMgeTwTPGamvt3/pp74ac85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:242795D48C3B5911|rigid:z2Ksa3T0l9QEbioAmSDDCJuqZN0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25756 uniprotkb:O25721 intact:EBI-9261023|ensemblbacteria:AAD08177 intact:EBI-9262771|ensemblbacteria:AAD08136 psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:o25721_helpy(display_long)|uniprotkb:HP_1089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337461|imex:IM-22256-1152 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) refseq:WP_001047444.1|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR027417|refseq:NP_207880.1|interpro:IPR038726|ensemblbacteria:AAD08136(transcript)|ensemblbacteria:HP_1089(gene)|uniprotkb:O25721(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 rogid:cj4UolBD2x+jJMZNF8agkRv6zTQ85962 intact-crc:9E66D2E53CB1D87C|rigid:CuuCyaIpxZBj1DiGIuKz9wSdDdk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZL79 uniprotkb:O25721 intact:EBI-9262981|ensemblbacteria:AAD06276 intact:EBI-9262771|ensemblbacteria:AAD08136 psi-mi:q9zl79_helpj(display_long)|uniprotkb:jhp_0701(locus name) psi-mi:o25721_helpy(display_long)|uniprotkb:HP_1089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337479|imex:IM-22256-1153 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005358(Protein of unknown function UPF0153)|ensemblbacteria:AAD06276(transcript)|ensemblbacteria:jhp_0701(gene)|uniprotkb:Q9ZL79(identity) refseq:WP_001047444.1|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR027417|refseq:NP_207880.1|interpro:IPR038726|ensemblbacteria:AAD08136(transcript)|ensemblbacteria:HP_1089(gene)|uniprotkb:O25721(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lF/xSeC5ME9IUHouS6yOLLg1grE85963 rogid:cj4UolBD2x+jJMZNF8agkRv6zTQ85962 intact-crc:D3B850925DDDDE4D|rigid:rg8xQiEdtP0aaOiuy+MrYCQEvJ0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25724 uniprotkb:O25769 intact:EBI-7548352|intact:MINT-160184|ensemblbacteria:AAD08138 intact:EBI-7500041|intact:MINT-169612|ensemblbacteria:AAD08203 psi-mi:o25724_helpy(display_long)|uniprotkb:HP_1092(locus name) psi-mi:fliw1_helpy(display_long)|uniprotkb:HP_1154(locus name)|uniprotkb:fliW1(gene name)|psi-mi:fliW1(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337497|imex:IM-22256-1154 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001179202.1|mint:O25724|refseq:NP_207883.1|ensemblbacteria:AAD08138(transcript)|ensemblbacteria:HP_1092(gene)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|interpro:IPR020013|interpro:IPR037925|dip:DIP-3379N|uniprotkb:O25724(identity) mint:O25769|refseq:WP_001105854.1|refseq:NP_207945.1|ensemblbacteria:AAD08203(transcript)|ensemblbacteria:HP_1154(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006417"(regulation of translation)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR003775(Protein of unknown function DUF180)|interpro:IPR024046|dip:DIP-3307N|uniprotkb:O25769(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lhG6xCVqF0mT6zi7sJ1idmjyEA485962 rogid:akwR8LvQZuOb1rNt4vqG2NubfHU85962 intact-crc:57CC7134C792CF99|rigid:WX8CGg8bobt/gVQBA7nifGYH7Nw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25724 uniprotkb:P56188 intact:EBI-7548352|intact:MINT-160184|ensemblbacteria:AAD08138 intact:EBI-9267680|ensemblbacteria:AAD08425 psi-mi:o25724_helpy(display_long)|uniprotkb:HP_1092(locus name) psi-mi:rpe_helpy(display_long)|uniprotkb:rpe(gene name)|psi-mi:rpe(display_short)|uniprotkb:HP_1386(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337515|imex:IM-22256-1155 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001179202.1|mint:O25724|refseq:NP_207883.1|ensemblbacteria:AAD08138(transcript)|ensemblbacteria:HP_1092(gene)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|interpro:IPR020013|interpro:IPR037925|dip:DIP-3379N|uniprotkb:O25724(identity) refseq:WP_000861474.1|interpro:IPR000056(Ribulose-phosphate 3-epimerase)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR026019|refseq:NP_208177.1|ensemblbacteria:AAD08425(transcript)|ensemblbacteria:HP_1386(gene)|go:"GO:0004750"(D-ribulose-phosphate 3-epimerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0009052"(pentose-phosphate shunt, non-oxidative branch)|go:"GO:0019323"(pentose catabolic process)|go:"GO:0044262"(cellular carbohydrate metabolic process)|go:"GO:0046872"(metal ion binding)|uniprotkb:P56188(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lhG6xCVqF0mT6zi7sJ1idmjyEA485962 rogid:Utvb3Lj255Zj4s5/PRoOiUlCuVg85962 intact-crc:8EB8D906566BAC64|rigid:qCL0Hj2ERNNHcBpyfeHdRvEgpQQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P55977 uniprotkb:O25726 intact:EBI-7723667|ensemblbacteria:AAD08555|intact:MINT-4077929 intact:EBI-9263129|ensemblbacteria:AAD08147 psi-mi:nusa_helpy(display_long)|uniprotkb:nusA(gene name)|psi-mi:nusA(display_short)|uniprotkb:HP_1514(locus name) psi-mi:o25726_helpy(display_long)|uniprotkb:HP_1094(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337533|imex:IM-22256-1156 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P55977|ensemblbacteria:AAD08555(transcript)|ensemblbacteria:HP_1514(gene)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0031564"(transcription antitermination)|interpro:IPR003029(S1, RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|interpro:IPR010213(Transcription termination factor NusA)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013735(Transcription factor NusA, N-terminal)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR022967|interpro:IPR025249|interpro:IPR030842|interpro:IPR036555|refseq:WP_000411646.1|refseq:NP_208305.1|dip:DIP-3664N|uniprotkb:P55977(identity) refseq:WP_010875592.1|refseq:NP_207885.1|ensemblbacteria:AAD08147(transcript)|ensemblbacteria:HP_1094(gene)|uniprotkb:O25726(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:RTwa+hy08+YPTH/PON5T0ltkljM85962 rogid:0zJ77Ponsbl4Xf7C20HGyco/c9M85962 intact-crc:2EA48B9D99D5F1ED|rigid:RxPfN3devzWnThpjsRfwcNA8i0Y false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25744 uniprotkb:Q9ZLF1 intact:EBI-7495544|intact:MINT-174659|ensemblbacteria:AAD08163 intact:EBI-9267817|ensemblbacteria:AAD06206 psi-mi:o25744_helpy(display_long)|uniprotkb:HP_1119(locus name) psi-mi:q9zlf1_helpj(display_long)|uniprotkb:jhp_0629(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337551|imex:IM-22256-1157 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25744|refseq:NP_207910.1|ensemblbacteria:AAD08163(transcript)|ensemblbacteria:HP_1119(gene)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009424"(bacterial-type flagellum hook)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR002371(Flagellar hook-associated protein)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|refseq:WP_000508899.1|dip:DIP-3213N|uniprotkb:O25744(identity) refseq:WP_001121730.1|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002941(DNA methylase N-4/N-6)|interpro:IPR017985|interpro:IPR029063|ensemblbacteria:AAD06206(transcript)|ensemblbacteria:jhp_0629(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0015667"("site-specific DNA-methyltransferase (cytosine-N4-specific) activity")|uniprotkb:Q9ZLF1(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lVVDJpejwMKRcpAVAq9yUA7NStw85962 rogid:JE/z/ieywXNLjg6/Sx0hMlIUcn485963 intact-crc:2D6A8743002BEC4E|rigid:E699DHQmIoICPM2A3XnYuijGQsQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25754 uniprotkb:O25423 intact:EBI-7653735|ensemblbacteria:AAD08171|intact:MINT-164494 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:exdl1_helpy(display_long)|uniprotkb:HP_1129(locus name) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337569|imex:IM-22256-1158 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08171(transcript)|ensemblbacteria:HP_1129(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0022857"(transmembrane transporter activity)|interpro:IPR003400(Biopolymer transport protein ExbD/TolR)|mint:O25754|refseq:NP_207920.1|refseq:WP_001105106.1|dip:DIP-3550N|uniprotkb:O25754(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zA9fWUgDJHLw2n/n3gdqcOyvR/I85962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:88F2D2F38D3E12DD|rigid:SbWHagQIBW0LUnzNYvGLmLJPL2s false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25754 uniprotkb:Q9ZKI0 intact:EBI-7653735|ensemblbacteria:AAD08171|intact:MINT-164494 intact:EBI-9265661|ensemblbacteria:AAD06537 psi-mi:exdl1_helpy(display_long)|uniprotkb:HP_1129(locus name) psi-mi:q9zki0_helpj(display_long)|uniprotkb:jhp_0955(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337587|imex:IM-22256-1159 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08171(transcript)|ensemblbacteria:HP_1129(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015031"(protein transport)|go:"GO:0022857"(transmembrane transporter activity)|interpro:IPR003400(Biopolymer transport protein ExbD/TolR)|mint:O25754|refseq:NP_207920.1|refseq:WP_001105106.1|dip:DIP-3550N|uniprotkb:O25754(identity) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD06537(transcript)|ensemblbacteria:jhp_0955(gene)|uniprotkb:Q9ZKI0(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zA9fWUgDJHLw2n/n3gdqcOyvR/I85962 rogid:qVtLDPLjKL1Da6oe/FPOLK7FogE85963 intact-crc:DB264AD59543D6F2|rigid:Lj3Ms3e37mpdHkA0ET53kf8gAcU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25678 uniprotkb:O25757 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9267895|ensemblbacteria:AAD08179 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o25757_helpy(display_long)|uniprotkb:HP_1137(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337605|imex:IM-22256-1160 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_001027591.1|interpro:IPR002146(ATPase, F0 complex, subunit B/B', bacterial and chloroplast)|refseq:NP_207928.1|ensemblbacteria:AAD08179(transcript)|ensemblbacteria:HP_1137(gene)|go:"GO:0015078"(proton transmembrane transporter activity)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045263"("proton-transporting ATP synthase complex, coupling factor F(o)")|uniprotkb:O25757(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:3yDak1s+lH0NNAp0AgSbYlW+zJM85962 intact-crc:46D2F7E60899C32A|rigid:cxAO2LJIu2+juh9J9dUpXX04nI4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25768 uniprotkb:O25310 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337623|imex:IM-22256-1161 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 intact-crc:212C258065691359|rigid:6YzeZeRozVFaqq75Pw4Akp5WfR4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25764 uniprotkb:O25768 intact:EBI-7609534|intact:MINT-163054|ensemblbacteria:AAD08200 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 psi-mi:o25764_helpy(display_long)|uniprotkb:HP_1145(locus name) psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337641|imex:IM-22256-1162 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25764|ensemblbacteria:AAD08200(transcript)|ensemblbacteria:HP_1145(gene)|interpro:IPR021139|dip:DIP-3653N|uniprotkb:O25764(identity) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6UHcZtDYuEpykgLcL4zPBB85+XI85962 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 intact-crc:8A44E1E85ABFBB66|rigid:lyl/IeKxw9547XI2x2GF1hcQ3p8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25768 uniprotkb:O25983 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337659|imex:IM-22256-1163 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:2FB348B1E27FDEAA|rigid:f2sjo7jBCURucLUWQ4jGw/YgXMM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26071 uniprotkb:O25778 intact:EBI-9261904|ensemblbacteria:AAD08590 intact:EBI-9268026|ensemblbacteria:AAD08214 psi-mi:o26071_helpy(display_long)|uniprotkb:HP_1546(locus name) psi-mi:o25778_helpy(display_long)|uniprotkb:HP_1163(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337677|imex:IM-22256-1164 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001202125.1|interpro:IPR007485(Rare lipoprotein B)|refseq:NP_208337.1|ensemblbacteria:AAD08590(transcript)|ensemblbacteria:HP_1546(gene)|go:"GO:0019867"(outer membrane)|go:"GO:0043165"(Gram-negative-bacterium-type cell outer membrane assembly)|uniprotkb:O26071(identity) refseq:WP_001090949.1|interpro:IPR004714(Cytochrome oxidase maturation protein cbb3-type)|refseq:NP_207954.1|ensemblbacteria:AAD08214(transcript)|ensemblbacteria:HP_1163(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25778(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:G4XOzucE1Mq9a/cBvsA+kr5IyHk85962 rogid:rgTybntLaZuKr9HDUGurlrFZ2vI85962 intact-crc:2ACD48102965206F|rigid:lcr0bdRVl9euu+2Jp3D20RL6yxE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZJ23 uniprotkb:O25778 intact:EBI-9268044|ensemblbacteria:AAD07071 intact:EBI-9268026|ensemblbacteria:AAD08214 psi-mi:q9zj23_helpj(display_long)|uniprotkb:jhp_1495(locus name) psi-mi:o25778_helpy(display_long)|uniprotkb:HP_1163(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337695|imex:IM-22256-1165 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07071(transcript)|ensemblbacteria:jhp_1495(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:Q9ZJ23(identity) refseq:WP_001090949.1|interpro:IPR004714(Cytochrome oxidase maturation protein cbb3-type)|refseq:NP_207954.1|ensemblbacteria:AAD08214(transcript)|ensemblbacteria:HP_1163(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25778(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:pnrvQQo8/sdp6ESgdMffqomLvTg85963 rogid:rgTybntLaZuKr9HDUGurlrFZ2vI85962 intact-crc:BFDF0C2966C9D351|rigid:OKbB76P1vSTLVbAtlkz9C+lOATw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25743 uniprotkb:O25803 intact:EBI-7507583|intact:MINT-160568|ensemblbacteria:AAD08162 intact:EBI-9268099|ensemblbacteria:AAD08238 psi-mi:o25743_helpy(display_long)|uniprotkb:HP_1118(locus name) psi-mi:o25803_helpy(display_long)|uniprotkb:HP_1192(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337713|imex:IM-22256-1166 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25743|refseq:NP_207909.1|refseq:WP_001254471.1|ensemblbacteria:AAD08162(transcript)|ensemblbacteria:HP_1118(gene)|go:"GO:0006751"(glutathione catabolic process)|go:"GO:0032757"(positive regulation of interleukin-8 production)|go:"GO:0036374"(glutathione hydrolase activity)|go:"GO:0042130"(negative regulation of T cell proliferation)|go:"GO:0102953"(hypoglycin A gamma-glutamyl transpeptidase activity)|go:"GO:0103068"(leukotriene C4 gamma-glutamyl transferase activity)|go:"GO:1902807"(negative regulation of cell cycle G1/S phase transition)|interpro:IPR000101(Gamma-glutamyltranspeptidase)|interpro:IPR029055|interpro:IPR043137|interpro:IPR043138|rcsb pdb:2NQO|rcsb pdb:2QM6|rcsb pdb:2QMC|rcsb pdb:3FNM|rcsb pdb:5BPK|dip:DIP-3652N|uniprotkb:O25743(identity) refseq:WP_000744184.1|refseq:NP_207983.1|ensemblbacteria:AAD08238(transcript)|ensemblbacteria:HP_1192(gene)|uniprotkb:O25803(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:N21y9xxpJ1K+ssMNYxIueOV7HC485962 rogid:suvoTQcf/4hQW2uelCP5FsA+HRk85962 intact-crc:6B6E5EB2BC5909F7|rigid:ZBJ4Ppmoa8xBq4INHcfdVYcS33s false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25310 uniprotkb:O25805 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-9268129|ensemblbacteria:AAD08244 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:o25805_helpy(display_long)|uniprotkb:HP_1194(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337731|imex:IM-22256-1167 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) ensemblbacteria:AAD08244(transcript)|ensemblbacteria:HP_1194(gene)|uniprotkb:O25805(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:LYpn+S16rlrjqSTwSHd4o28xxNo85962 intact-crc:75EEA551013762AE|rigid:p9WtN81hfjVdrzMChZ/mFmzNrIM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25808 uniprotkb:O25018 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337749|imex:IM-22256-1168 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 intact-crc:EC39D26ADA218493|rigid:DyOPscWgLdsAjHzXJTSYAu+opd0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25808 uniprotkb:O25790 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-9261675|ensemblbacteria:AAD08226 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337767|imex:IM-22256-1169 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 intact-crc:5DCA94F3D7E40D9E|rigid:zhW5UV0Lg8d8JEHGfS9y9Ss56xA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25808 uniprotkb:O25983 intact:EBI-7501632|intact:MINT-161707|ensemblbacteria:AAD08256 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25808_helpy(display_long)|uniprotkb:HP_1207(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337785|imex:IM-22256-1170 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25808|refseq:WP_001162995.1|refseq:NP_207999.1|ensemblbacteria:AAD08256(transcript)|ensemblbacteria:HP_1207(gene)|go:"GO:0004713"(protein tyrosine kinase activity)|go:"GO:0005829"(cytosol)|interpro:IPR023198|interpro:IPR023214|interpro:IPR036412|interpro:IPR041492|dip:DIP-3380N|uniprotkb:O25808(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:L0lqh7pYfizQy5vfTvzdxLLDY/k85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:789186F8901707D8|rigid:o2PVEW+6mr+zPyoOdVdUG18OFts false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P94845 uniprotkb:O25811 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-9268305|ensemblbacteria:AAD08267 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:o25811_helpy(display_long)|uniprotkb:HP_1211(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337803|imex:IM-22256-1171 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) ensemblbacteria:AAD08267(transcript)|ensemblbacteria:HP_1211(gene)|uniprotkb:O25811(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:KdbEcOsG3546IArBWQ4zFWOPXaM85962 intact-crc:7F395A358A270D92|rigid:4rYi2uccuewIRQ1bZ/Kgdp/1zw8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56132 uniprotkb:O25813 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-9264319|ensemblbacteria:AAD08259 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:o25813_helpy(display_long)|uniprotkb:HP_1214(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337821|imex:IM-22256-1172 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) refseq:WP_001225412.1|refseq:NP_208006.1|interpro:IPR029057|ensemblbacteria:AAD08259(transcript)|ensemblbacteria:HP_1214(gene)|uniprotkb:O25813(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:iqHRK4pl63bBSHNb2A56ofp3Wu885962 intact-crc:FC08E24777B7232C|rigid:DIfty91m6IGLTGdPm1Db0bBb0ew false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P65185 uniprotkb:O25813 intact:EBI-7609604|uniprotkb:O25160|intact:MINT-4070280|ensemblbacteria:AAD07469 intact:EBI-9264319|ensemblbacteria:AAD08259 psi-mi:isph_helpy(display_long)|uniprotkb:ispH(gene name)|psi-mi:ispH(display_short)|uniprotkb:lytB(gene name synonym)|uniprotkb:HP_0400(locus name) psi-mi:o25813_helpy(display_long)|uniprotkb:HP_1214(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337839|imex:IM-22256-1173 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P65185|refseq:WP_000403575.1|interpro:IPR003451(LytB protein)|refseq:NP_207198.1|ensemblbacteria:AAD07469(transcript)|ensemblbacteria:HP_0400(gene)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050992"(dimethylallyl diphosphate biosynthetic process)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0051745"(4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity)|uniprotkb:P65185(identity) refseq:WP_001225412.1|refseq:NP_208006.1|interpro:IPR029057|ensemblbacteria:AAD08259(transcript)|ensemblbacteria:HP_1214(gene)|uniprotkb:O25813(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nv4H+R87/ltx+Gv6ixV28j8Cw6Q85962 rogid:iqHRK4pl63bBSHNb2A56ofp3Wu885962 intact-crc:8D187D6584C39686|rigid:9Xqnw4b/PpEXXcxAQy5ecg7JkvY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25817 uniprotkb:O25193 intact:EBI-7703015|ensemblbacteria:AAD08261|intact:MINT-179697 intact:EBI-9268368|ensemblbacteria:AAD07521 psi-mi:pur2_helpy(display_long)|uniprotkb:HP_1218(locus name)|uniprotkb:purD(gene name)|psi-mi:purD(display_short)|uniprotkb:GARS(gene name synonym)|uniprotkb:Glycinamide ribonucleotide synthetase(gene name synonym)|uniprotkb:Phosphoribosylglycinamide synthetase(gene name synonym) psi-mi:o25193_helpy(display_long)|uniprotkb:HP_0445(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337857|imex:IM-22256-1174 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25817|ensemblbacteria:AAD08261(transcript)|ensemblbacteria:HP_1218(gene)|go:"GO:0004637"(phosphoribosylamine-glycine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0009113"(purine nucleobase biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000115(Phosphoribosylglycinamide synthetase)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|interpro:IPR020560|interpro:IPR020561|interpro:IPR020562|interpro:IPR037123|refseq:WP_000654350.1|refseq:NP_208010.1|dip:DIP-3667N|uniprotkb:O25817(identity) ensemblbacteria:AAD07521(transcript)|ensemblbacteria:HP_0445(gene)|uniprotkb:O25193(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+K5vLveEXHG7fjwhjmtmEB8bdzQ85962 rogid:MA06LY47GdRMwnyLuB4R6iCKeyA85962 intact-crc:377299C70D430262|rigid:sj0Ltn9vIWwu0JDgWreVqm0KsR0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25817 uniprotkb:Q9Z3A7 intact:EBI-7703015|ensemblbacteria:AAD08261|intact:MINT-179697 intact:EBI-9264847|ensemblbacteria:AAD06538|ensemblbacteria:AAD06883 psi-mi:pur2_helpy(display_long)|uniprotkb:HP_1218(locus name)|uniprotkb:purD(gene name)|psi-mi:purD(display_short)|uniprotkb:GARS(gene name synonym)|uniprotkb:Glycinamide ribonucleotide synthetase(gene name synonym)|uniprotkb:Phosphoribosylglycinamide synthetase(gene name synonym) psi-mi:q9z3a7_helpj(display_long)|uniprotkb:jhp_0958(locus name)|uniprotkb:jhp_1306(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337875|imex:IM-22256-1175 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25817|ensemblbacteria:AAD08261(transcript)|ensemblbacteria:HP_1218(gene)|go:"GO:0004637"(phosphoribosylamine-glycine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006189"('de novo' IMP biosynthetic process)|go:"GO:0009113"(purine nucleobase biosynthetic process)|go:"GO:0046872"(metal ion binding)|interpro:IPR000115(Phosphoribosylglycinamide synthetase)|interpro:IPR011054(Rudiment single hybrid motif)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|interpro:IPR020560|interpro:IPR020561|interpro:IPR020562|interpro:IPR037123|refseq:WP_000654350.1|refseq:NP_208010.1|dip:DIP-3667N|uniprotkb:O25817(identity) ensemblbacteria:AAD06538(transcript)|ensemblbacteria:AAD06883(transcript)|ensemblbacteria:jhp_0958(gene)|ensemblbacteria:jhp_1306(gene)|uniprotkb:Q9Z3A7(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+K5vLveEXHG7fjwhjmtmEB8bdzQ85962 rogid:UZGi2Zy3UKsAkuRx4SF2j3p2eak85963 intact-crc:37DA0FD001D42777|rigid:0bKWSh7eYIG/EheXDWWouytValo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:O25818 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9268401|ensemblbacteria:AAD08268 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o25818_helpy(display_long)|uniprotkb:HP_1219(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337893|imex:IM-22256-1176 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:YP_009112937.1|refseq:WP_010875608.1|ensemblbacteria:AAD08268(transcript)|ensemblbacteria:HP_1219(gene)|uniprotkb:O25818(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:th01geA6lbGmmPlX9N2ApKDK7Bg85962 intact-crc:5C6DF1D4D32BE0B3|rigid:vP7ylcU1pTCzwiweUTFpAG673SA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25820 uniprotkb:O06914 intact:EBI-7514432|intact:MINT-186724|ensemblbacteria:AAD08264 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25820_helpy(display_long)|uniprotkb:HP_1222(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337911|imex:IM-22256-1177 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001261912.1|mint:O25820|refseq:NP_208014.1|ensemblbacteria:AAD08264(transcript)|ensemblbacteria:HP_1222(gene)|go:"GO:0004458"("D-lactate dehydrogenase (cytochrome) activity")|go:"GO:0008720"(D-lactate dehydrogenase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051536"(iron-sulfur cluster binding)|go:"GO:0071949"(FAD binding)|go:"GO:1903457"(lactate catabolic process)|interpro:IPR004113(FAD-linked oxidase, C-terminal)|interpro:IPR006094(FAD linked oxidase, N-terminal)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR016164(FAD-linked oxidase-like, C-terminal)|interpro:IPR016166(FAD-binding, type 2)|interpro:IPR016167(FAD-binding, type 2, subdomain 1)|interpro:IPR016171(Vanillyl-alcohol oxidase, C-terminal subdomain 2)|interpro:IPR017896|interpro:IPR017900|interpro:IPR036318|dip:DIP-3097N|uniprotkb:O25820(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gg3KcfMhSF9I/kvoCtC6JFnnYPs85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:CAF0534AE9826339|rigid:1OKVgwGtVLliiS5SzFqHlOqIJ2g false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25822 uniprotkb:O25983 intact:EBI-7511185|intact:MINT-160212|ensemblbacteria:AAD08269 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:o25822_helpy(display_long)|uniprotkb:HP_1224(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337929|imex:IM-22256-1178 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25822|refseq:WP_001862414.1|refseq:NP_208016.1|ensemblbacteria:AAD08269(transcript)|ensemblbacteria:HP_1224(gene)|go:"GO:0004852"(uroporphyrinogen-III synthase activity)|go:"GO:0006780"(uroporphyrinogen III biosynthetic process)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|interpro:IPR003754(Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)|interpro:IPR036108|interpro:IPR039793|rcsb pdb:3P9Z|dip:DIP-3674N|uniprotkb:O25822(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:71mQk6x9P1J618vGRsrznm3y90g85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:8873539693A269DB|rigid:hgi2oE8D5jmEhnomn0amFynl8fc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25822 uniprotkb:Q9ZN32 intact:EBI-7511185|intact:MINT-160212|ensemblbacteria:AAD08269 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o25822_helpy(display_long)|uniprotkb:HP_1224(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337947|imex:IM-22256-1179 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25822|refseq:WP_001862414.1|refseq:NP_208016.1|ensemblbacteria:AAD08269(transcript)|ensemblbacteria:HP_1224(gene)|go:"GO:0004852"(uroporphyrinogen-III synthase activity)|go:"GO:0006780"(uroporphyrinogen III biosynthetic process)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|interpro:IPR003754(Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)|interpro:IPR036108|interpro:IPR039793|rcsb pdb:3P9Z|dip:DIP-3674N|uniprotkb:O25822(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:71mQk6x9P1J618vGRsrznm3y90g85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:B06398ED4D8BE772|rigid:MikG1v5QkqdKOJGjcVCY9YPXrl8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O06914 uniprotkb:O25826 intact:EBI-9261354|ensemblbacteria:AAD07258 intact:EBI-9268464|ensemblbacteria:AAD08273 psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:rpph_helpy(display_long)|uniprotkb:rppH(gene name)|psi-mi:rppH(display_short)|uniprotkb:"(Di)nucleoside polyphosphate hydrolase"(gene name synonym)|uniprotkb:nudH(gene name synonym)|uniprotkb:HP_1228(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337965|imex:IM-22256-1180 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) refseq:WP_000902563.1|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR015797(NUDIX)|interpro:IPR020084|interpro:IPR020476|interpro:IPR022927|refseq:NP_208020.1|ensemblbacteria:AAD08273(transcript)|ensemblbacteria:HP_1228(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0034353"(RNA pyrophosphohydrolase activity)|uniprotkb:O25826(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 rogid:ew3Vtvdj6VBre4ZFuEldILkIPIk85962 intact-crc:F877EB2F15DD4E21|rigid:HEQeyz/0fbwM5QUvvHGaZrLQkXc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25678 uniprotkb:O25837 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9268501|ensemblbacteria:AAD08289 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o25837_helpy(display_long)|uniprotkb:HP_1239(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9337983|imex:IM-22256-1181 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) ensemblbacteria:AAD08289(transcript)|ensemblbacteria:HP_1239(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25837(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:alICJVowC7TyiHFz6AOexzZEuPU85962 intact-crc:EFDE4C12C19C9A96|rigid:s+Umr3Vx8ieLBaT+UGO2otdhVRQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56120 uniprotkb:O25839 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9268516|ensemblbacteria:AAD08286 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:o25839_helpy(display_long)|uniprotkb:HP_1242(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338001|imex:IM-22256-1182 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) interpro:IPR038444|refseq:WP_000468330.1|interpro:IPR007420(Protein of unknown function DUF465)|rcsb pdb:1ZHC|refseq:NP_208034.1|ensemblbacteria:AAD08286(transcript)|ensemblbacteria:HP_1242(gene)|uniprotkb:O25839(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:C3dVPbyUUCX/0Acy4tQl2G6SkC885962 intact-crc:C3A061BE319D4CAA|rigid:Aed0KQKRkJtYRxSI4P+MPCgu3xQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25852 uniprotkb:O25008 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7607228|intact:MINT-177413|ensemblbacteria:AAD07288 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:iscs_helpy(display_long)|uniprotkb:iscS(gene name)|psi-mi:iscS(display_short)|uniprotkb:HP_0220(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338019|imex:IM-22256-1183 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) refseq:WP_000941691.1|mint:O25008|refseq:NP_207018.1|ensemblbacteria:AAD07288(transcript)|ensemblbacteria:HP_0220(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006534"(cysteine metabolic process)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0031071"(cysteine desulfurase activity)|go:"GO:0044571"([2Fe-2S] cluster assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|interpro:IPR000192(Aminotransferase, class V/Cysteine desulphurase)|interpro:IPR010240(Cysteine desulphurase)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|interpro:IPR016454(Cysteine desulphurase, NifS)|interpro:IPR017773(Cysteine desulphurase, NifS, proteobacteria)|rcsb pdb:5WT2|rcsb pdb:5WT4|rcsb pdb:5WT5|rcsb pdb:5WT6|rcsb pdb:6KG0|rcsb pdb:6KG1|rcsb pdb:7CET|rcsb pdb:7CEU|dip:DIP-3630N|uniprotkb:O25008(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint|function:Catalyzes the removal of elemental sulfur from cysteine to produce alanine figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:YiXCohNQqJR9uWzOaw8ACg2+SmE85962 intact-crc:B894F8E34754C0CE|rigid:faE7CPiAlKTRcmqLKV2juVpOtM0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25852 uniprotkb:O25214 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338037|imex:IM-22256-1184 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 intact-crc:AE3C53A2E54EE16C|rigid:w1coROhZ5aYvo+IGPQh2USU4Ays false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25852 uniprotkb:O25495 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338055|imex:IM-22256-1185 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 intact-crc:DC3D86A78F184406|rigid:mi2Xap3A6OCo8UrSXJ0cW5NdmUE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25933 uniprotkb:O25852 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338073|imex:IM-22256-1186 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 intact-crc:7D06E9DEBA10A6B7|rigid:tKEjKT5KDX1ue87F8/EnmjVSFww false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25094 uniprotkb:O25880 intact:EBI-7584994|intact:MINT-171400|ensemblbacteria:AAD07394 intact:EBI-7497265|intact:MINT-171630|ensemblbacteria:AAD08366 psi-mi:pseh_helpy(display_long)|uniprotkb:pseH(gene name)|psi-mi:pseH(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein H(gene name synonym)|uniprotkb:HP_0327(locus name) psi-mi:o25880_helpy(display_long)|uniprotkb:HP_1321(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338091|imex:IM-22256-1187 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25094|refseq:WP_000742697.1|refseq:NP_207125.1|ensemblbacteria:AAD07394(transcript)|ensemblbacteria:HP_0327(gene)|go:"GO:0008080"(N-acetyltransferase activity)|interpro:IPR000182(GCN5-related N-acetyltransferase)|interpro:IPR016181(Acyl-CoA N-acyltransferase)|interpro:IPR020036|rcsb pdb:4RI1|dip:DIP-3555N|uniprotkb:O25094(identity) mint:O25880|refseq:NP_208113.1|ensemblbacteria:AAD08366(transcript)|ensemblbacteria:HP_1321(gene)|go:"GO:0005524"(ATP binding)|interpro:IPR027417|refseq:WP_001268291.1|dip:DIP-3339N|uniprotkb:O25880(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uDBKnnI5LujCSAw9Z5WaulboR8Y85962 rogid:KJdUSA35nj6j41lYMx/gMx0124k85962 intact-crc:73AFA41798066C40|rigid:8fhQHGqc5ac5C42EBeJPyT0ZXCo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25214 uniprotkb:O25895 intact:EBI-7499615|intact:MINT-184266|ensemblbacteria:AAD07530 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:o25214_helpy(display_long)|uniprotkb:HP_0468(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338109|imex:IM-22256-1188 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25214|refseq:WP_000114695.1|refseq:NP_207266.1|ensemblbacteria:AAD07530(transcript)|ensemblbacteria:HP_0468(gene)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR041543|dip:DIP-3243N|uniprotkb:O25214(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MaZDUmaJ/SCFo9mYYnlnlszw7XI85962 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:291FAF59870C0055|rigid:h3Hbt7rEn9isauPi9FBJXxaZtwU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25546 uniprotkb:O25895 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-9267961|ensemblbacteria:AAD08379 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338127|imex:IM-22256-1189 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 intact-crc:1E15FD7B942D3246|rigid:t5gaWWPyYuN9QXzHQ7gljDaqLuc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25895 uniprotkb:Q9ZKJ1 intact:EBI-9267961|ensemblbacteria:AAD08379 intact:EBI-9262335|ensemblbacteria:AAD06522 psi-mi:nadd_helpy(display_long)|uniprotkb:nadD(gene name)|psi-mi:nadD(display_short)|uniprotkb:"Deamido-NAD(+) diphosphorylase"(gene name synonym)|uniprotkb:"Deamido-NAD(+) pyrophosphorylase"(gene name synonym)|uniprotkb:Nicotinate mononucleotide adenylyltransferase(gene name synonym)|uniprotkb:HP_1337(locus name) psi-mi:q9zkj1_helpj(display_long)|uniprotkb:jhp_0944(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338145|imex:IM-22256-1190 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001095125.1|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR005248(Probable nicotinate-nucleotide adenylyltransferase)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|refseq:NP_208129.1|ensemblbacteria:AAD08379(transcript)|ensemblbacteria:HP_1337(gene)|go:"GO:0004515"(nicotinate-nucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0009435"(NAD biosynthetic process)|uniprotkb:O25895(identity) ensemblbacteria:AAD06522(transcript)|ensemblbacteria:jhp_0944(gene)|uniprotkb:Q9ZKJ1(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:SCmivnW15RNHHMBYnSdcLnocnCw85962 rogid:1R4utf6FSlcyXPNx5xhZw0DvxCU85963 intact-crc:6257B1F9FFED0512|rigid:2lzKwsIFqWehEVQsK6t1reZTFQg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25678 uniprotkb:O25900 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9268907|ensemblbacteria:AAD08384 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:o25900_helpy(display_long)|uniprotkb:HP_1343(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338163|imex:IM-22256-1191 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_000395259.1|interpro:IPR005496(Integral membrane protein TerC)|refseq:NP_208135.1|ensemblbacteria:AAD08384(transcript)|ensemblbacteria:HP_1343(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25900(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:zxgi5eblWzqkBekaBAzv31fEXa485962 intact-crc:D4EF34841136BF86|rigid:MGusYZL9vu0NQQsjdr083ZKRZMI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25902 uniprotkb:Q9ZKK8 intact:EBI-9268922|ensemblbacteria:AAD08387 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25902_helpy(display_long)|uniprotkb:HP_1346(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338181|imex:IM-22256-1192 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001122605.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020831|refseq:NP_208138.1|ensemblbacteria:AAD08387(transcript)|ensemblbacteria:HP_1346(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:O25902(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:WDogUyOni5hoqIb4mofVyCn9eRQ85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:54FE753CF157A3DE|rigid:jGFE7Jzhk6NYYnQeo69FHttqw8M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25884 uniprotkb:O25912 intact:EBI-7563847|intact:MINT-171833|ensemblbacteria:AAD08376 intact:EBI-9268958|ensemblbacteria:AAD08408 psi-mi:o25884_helpy(display_long)|uniprotkb:HP_1326(locus name) psi-mi:o25912_helpy(display_long)|uniprotkb:HP_1358(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338199|imex:IM-22256-1193 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25884|refseq:WP_000731617.1|refseq:NP_208118.1|ensemblbacteria:AAD08376(transcript)|ensemblbacteria:HP_1326(gene)|interpro:IPR032693|dip:DIP-3424N|uniprotkb:O25884(identity) refseq:WP_000953192.1|refseq:NP_208150.1|ensemblbacteria:AAD08408(transcript)|ensemblbacteria:HP_1358(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25912(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2GEiy82NYJExrkehNqEbNjZmsIQ85962 rogid:2nZmrBMZGRSynryx03OjQWwlpuc85962 intact-crc:D975676F343AE263|rigid:ZLowQs6ZG4NaEFevkRNxu5b76Eo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26052 uniprotkb:O25912 intact:EBI-9268988|ensemblbacteria:AAD08566 intact:EBI-9268958|ensemblbacteria:AAD08408 psi-mi:o26052_helpy(display_long)|uniprotkb:HP_1524(locus name) psi-mi:o25912_helpy(display_long)|uniprotkb:HP_1358(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338217|imex:IM-22256-1194 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000837022.1|refseq:NP_208314.1|ensemblbacteria:AAD08566(transcript)|ensemblbacteria:HP_1524(gene)|uniprotkb:O26052(identity) refseq:WP_000953192.1|refseq:NP_208150.1|ensemblbacteria:AAD08408(transcript)|ensemblbacteria:HP_1358(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25912(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:FhQuvCmIH5MakSYE97+ksGIN1BU85962 rogid:2nZmrBMZGRSynryx03OjQWwlpuc85962 intact-crc:88A58F33A4DEDAA8|rigid:fcmxD3EveVS6vVbac4HxSEHX+Vg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25098 uniprotkb:O25914 intact:EBI-7525931|intact:MINT-161558|ensemblbacteria:AAD07400 intact:EBI-9269006|ensemblbacteria:AAD08400 psi-mi:mind_helpy(display_long)|uniprotkb:Cell division inhibitor MinD(gene name synonym)|uniprotkb:HP_0331(locus name)|uniprotkb:minD(gene name)|psi-mi:minD(display_short) psi-mi:o25914_helpy(display_long)|uniprotkb:HP_1360(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338235|imex:IM-22256-1195 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25098|refseq:WP_001019069.1|refseq:NP_207129.1|ensemblbacteria:AAD07400(transcript)|ensemblbacteria:HP_0331(gene)|go:"GO:0000917"(division septum assembly)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR002586(Cobyrinic acid a,c-diamide synthase)|interpro:IPR010223(Septum site-determining protein MinD)|interpro:IPR025501|interpro:IPR027417|dip:DIP-3247N|uniprotkb:O25098(identity) refseq:WP_000913908.1|interpro:IPR000537(UbiA prenyltransferase)|interpro:IPR006371(4-hydroxybenzoate polyprenyltransferase related)|refseq:NP_208152.1|interpro:IPR039653|go:"GO:0016021"(integral component of membrane)|go:"GO:0016765"("transferase activity, transferring alkyl or aryl (other than methyl) groups")|go:"GO:0006744"(ubiquinone biosynthetic process)|ensemblbacteria:AAD08400(transcript)|ensemblbacteria:HP_1360(gene)|go:"GO:0005886"(plasma membrane)|uniprotkb:O25914(identity) psi-mi:"MI:0469"(intact) comment:mint|function:ATPase required for the correct placement of the division site. Cell division inhibitors minC and minD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize ftsZ filaments that have formed before they mature into polar Z rings - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:g+X6QS/gyLXZ5JsxHvQ8dHSCKMw85962 rogid:rv+3pv9juE3AahtAFlKVhGc9Q7A85962 intact-crc:73A19935F3967040|rigid:Oo3wUcnnwnc49ssi8bDdkHttCnY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25186 uniprotkb:O25939 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9266334|ensemblbacteria:AAD08437 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o25939_helpy(display_long)|uniprotkb:HP_1389(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338253|imex:IM-22256-1196 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) refseq:NP_208180.1|ensemblbacteria:AAD08437(transcript)|ensemblbacteria:HP_1389(gene)|uniprotkb:O25939(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:8KrGq0QO0ahvNyyYA1dfWFdO/+I85962 intact-crc:AC315E31C8A894A5|rigid:qAGl2rjunM89w3cpKLp9uvbFaLQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25546 uniprotkb:O25939 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 intact:EBI-9266334|ensemblbacteria:AAD08437 psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:o25939_helpy(display_long)|uniprotkb:HP_1389(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338271|imex:IM-22256-1197 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) refseq:NP_208180.1|ensemblbacteria:AAD08437(transcript)|ensemblbacteria:HP_1389(gene)|uniprotkb:O25939(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 rogid:8KrGq0QO0ahvNyyYA1dfWFdO/+I85962 intact-crc:02E3CDB98979DCE4|rigid:JV8rDXqLGXwXKYb9oi3vds7pUhI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25766 uniprotkb:O25939 intact:EBI-7612675|intact:MINT-179982|ensemblbacteria:AAD08192 intact:EBI-9266334|ensemblbacteria:AAD08437 psi-mi:trmd_helpy(display_long)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short)|uniprotkb:HP_1148(locus name)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym) psi-mi:o25939_helpy(display_long)|uniprotkb:HP_1389(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338289|imex:IM-22256-1198 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25766|refseq:WP_000672977.1|refseq:NP_207939.1|ensemblbacteria:AAD08192(transcript)|ensemblbacteria:HP_1148(gene)|go:"GO:0002939"(tRNA N1-guanine methylation)|go:"GO:0005829"(cytosol)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR023148|interpro:IPR029026|interpro:IPR029028|dip:DIP-3681N|uniprotkb:O25766(identity) refseq:NP_208180.1|ensemblbacteria:AAD08437(transcript)|ensemblbacteria:HP_1389(gene)|uniprotkb:O25939(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Specifically methylates guanosine-37 in various tRNAs - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:O9rQL0es2QZVKJFFGMJtNv3l0gE85962 rogid:8KrGq0QO0ahvNyyYA1dfWFdO/+I85962 intact-crc:F6B21D7293C877FE|rigid:d1Ksg7C3ICMJdfRkUwGNx31VOEE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25053 uniprotkb:O25947 intact:EBI-7540736|intact:MINT-175004|ensemblbacteria:AAD07349 intact:EBI-9269250|ensemblbacteria:AAD08442 psi-mi:o25053_helpy(display_long)|uniprotkb:HP_0276(locus name) psi-mi:o25947_helpy(display_long)|uniprotkb:HP_1397(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338307|imex:IM-22256-1199 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25053|refseq:WP_001155742.1|refseq:NP_207074.1|ensemblbacteria:AAD07349(transcript)|ensemblbacteria:HP_0276(gene)|go:"GO:0004425"(indole-3-glycerol-phosphate synthase activity)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013798(Indole-3-glycerol phosphate synthase)|go:"GO:0000162"(tryptophan biosynthetic process)|dip:DIP-3325N|uniprotkb:O25053(identity) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD08442(transcript)|ensemblbacteria:HP_1397(gene)|uniprotkb:O25947(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:DsRzABLIdfqyaWU6ai6Ur5GhiG485962 rogid:niMTXNqvukF9QazF+vDpCRlD4Xo85962 intact-crc:8118F0551C8AA031|rigid:mrhEv4X1Ou9maRSof4gvditJ1Zw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25947 uniprotkb:Q9ZN16 intact:EBI-9269250|ensemblbacteria:AAD08442 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:o25947_helpy(display_long)|uniprotkb:HP_1397(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338325|imex:IM-22256-1200 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR004919(Protein of unknown function DUF262)|ensemblbacteria:AAD08442(transcript)|ensemblbacteria:HP_1397(gene)|uniprotkb:O25947(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:niMTXNqvukF9QazF+vDpCRlD4Xo85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:020A6299ED420E52|rigid:444CP0bMU3/6Qqj4T+QKw5iBIHg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25186 uniprotkb:O25955 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9269346|ensemblbacteria:AAD08450 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o25955_helpy(display_long)|uniprotkb:HP_1405(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338343|imex:IM-22256-1201 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) ensemblbacteria:AAD08450(transcript)|ensemblbacteria:HP_1405(gene)|uniprotkb:O25955(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:9uRbsL9mRIVWeX36/3kvvNkY8Jo85962 intact-crc:DF8CA94255EA91B8|rigid:8kJzEejg+moEOFk45kp1C3DcvUY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25790 uniprotkb:O25955 intact:EBI-9261675|ensemblbacteria:AAD08226 intact:EBI-9269346|ensemblbacteria:AAD08450 psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:o25955_helpy(display_long)|uniprotkb:HP_1405(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338361|imex:IM-22256-1202 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) ensemblbacteria:AAD08450(transcript)|ensemblbacteria:HP_1405(gene)|uniprotkb:O25955(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 rogid:9uRbsL9mRIVWeX36/3kvvNkY8Jo85962 intact-crc:27C1A3736653008B|rigid:1gLlKA3zerFoOI92+Aqx83ghyHs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25955 uniprotkb:O25805 intact:EBI-9269346|ensemblbacteria:AAD08450 intact:EBI-9268129|ensemblbacteria:AAD08244 psi-mi:o25955_helpy(display_long)|uniprotkb:HP_1405(locus name) psi-mi:o25805_helpy(display_long)|uniprotkb:HP_1194(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338379|imex:IM-22256-1203 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08450(transcript)|ensemblbacteria:HP_1405(gene)|uniprotkb:O25955(identity) ensemblbacteria:AAD08244(transcript)|ensemblbacteria:HP_1194(gene)|uniprotkb:O25805(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9uRbsL9mRIVWeX36/3kvvNkY8Jo85962 rogid:LYpn+S16rlrjqSTwSHd4o28xxNo85962 intact-crc:6047E01BC626F82B|rigid:jSwDykA5kIDTQe8m5MsshfVg2Zg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56132 uniprotkb:O25955 intact:EBI-7540181|intact:MINT-162375|ensemblbacteria:AAD07338 intact:EBI-9269346|ensemblbacteria:AAD08450 psi-mi:y274_helpy(display_long)|uniprotkb:HP_0274(locus name) psi-mi:o25955_helpy(display_long)|uniprotkb:HP_1405(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338397|imex:IM-22256-1204 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56132|refseq:WP_001150530.1|refseq:NP_207072.1|ensemblbacteria:AAD07338(transcript)|ensemblbacteria:HP_0274(gene)|interpro:IPR005358(Protein of unknown function UPF0153)|dip:DIP-3321N|uniprotkb:P56132(identity) ensemblbacteria:AAD08450(transcript)|ensemblbacteria:HP_1405(gene)|uniprotkb:O25955(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:oP/Aysb9AVDRgBspjM6/aoQY1MI85962 rogid:9uRbsL9mRIVWeX36/3kvvNkY8Jo85962 intact-crc:EF033DC97BA81D20|rigid:6Iudff/EhY1IydkzyO+oVU4nUG4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25768 uniprotkb:O25960 intact:EBI-7507498|intact:MINT-176083|ensemblbacteria:AAD08202 intact:EBI-527816|ensemblbacteria:AAD08457 psi-mi:o25768_helpy(display_long)|uniprotkb:HP_1150(locus name) psi-mi:o25960_helpy(display_long)|uniprotkb:rsfS(gene name)|psi-mi:rsfS(display_short)|uniprotkb:HP_1414(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338415|imex:IM-22256-1205 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25768|refseq:NP_207941.1|refseq:WP_000545179.1|ensemblbacteria:AAD08202(transcript)|ensemblbacteria:HP_1150(gene)|go:"GO:0003723"(RNA binding)|interpro:IPR009019(K Homology, prokaryotic type)|dip:DIP-3658N|uniprotkb:O25768(identity) dip:DIP-3272N|refseq:NP_208205.1|ensemblbacteria:AAD08457(transcript)|ensemblbacteria:HP_1414(gene)|go:"GO:0005737"(cytoplasm)|refseq:WP_001076151.1|go:"GO:0017148"(negative regulation of translation)|go:"GO:0042256"(mature ribosome assembly)|go:"GO:0043023"(ribosomal large subunit binding)|go:"GO:0090071"(negative regulation of ribosome biogenesis)|interpro:IPR004394(Iojap-related protein)|interpro:IPR043519|mint:O25960|uniprotkb:O25960(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:X3kpCU142v5oV6PSRbVFJETTW0s85962 rogid:D81Qev7q3yhulo8xGNT2sEgMAVc85962 intact-crc:B8755B59F9923526|rigid:quCImRWGSlbNMx6q6rGb90smpSg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25107 uniprotkb:O25973 intact:EBI-7553265|intact:MINT-159417|ensemblbacteria:AAD07412 intact:EBI-9269536|ensemblbacteria:AAD08472 psi-mi:o25107_helpy(display_long)|uniprotkb:HP_0340(locus name) psi-mi:o25973_helpy(display_long)|uniprotkb:HP_1432(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338433|imex:IM-22256-1206 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862993.1|mint:O25107|refseq:NP_207138.1|ensemblbacteria:AAD07412(transcript)|ensemblbacteria:HP_0340(gene)|dip:DIP-3383N|uniprotkb:O25107(identity) ensemblbacteria:AAD08472(transcript)|ensemblbacteria:HP_1432(gene)|uniprotkb:O25973(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:l306qPaaVQ2ZZA8klkmT8i0osH485962 rogid:9uP29y2h7JQb8+dUIheaS1MSjnI85962 intact-crc:E8CDE26097EFA6A6|rigid:vQPXQKsic9dHK90YC3zeBrLYMko false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25979 uniprotkb:O06914 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338451|imex:IM-22256-1207 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:03FE4B730FA0A7C3|rigid:OkrrryzJ6xkioAvFCx7Sqmhy6DY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25979 uniprotkb:O25185 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-7556532|intact:MINT-166764|ensemblbacteria:AAD07506 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:o25185_helpy(display_long)|uniprotkb:HP_0435(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338469|imex:IM-22256-1208 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) mint:O25185|ensemblbacteria:AAD07506(transcript)|ensemblbacteria:HP_0435(gene)|go:"GO:0004386"(helicase activity)|interpro:IPR041677|interpro:IPR027417|dip:DIP-3394N|uniprotkb:O25185(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:Wo8lRDnMrBLGNLrCPjLFcu6Aemc85962 intact-crc:95789F4DCB3B52D6|rigid:wlt5oy4LwU5IGoiNjxysrcQYtFI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25979 uniprotkb:O25664 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338487|imex:IM-22256-1209 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:1D3B51E645D6E958|rigid:9SztTwthlDX/GbgTYjplVkDrrrQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25979 uniprotkb:O25766 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-7612675|intact:MINT-179982|ensemblbacteria:AAD08192 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:trmd_helpy(display_long)|uniprotkb:trmD(gene name)|psi-mi:trmD(display_short)|uniprotkb:HP_1148(locus name)|uniprotkb:M1G-methyltransferase(gene name synonym)|uniprotkb:tRNA [GM37] methyltransferase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338505|imex:IM-22256-1210 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) mint:O25766|refseq:WP_000672977.1|refseq:NP_207939.1|ensemblbacteria:AAD08192(transcript)|ensemblbacteria:HP_1148(gene)|go:"GO:0002939"(tRNA N1-guanine methylation)|go:"GO:0005829"(cytosol)|go:"GO:0052906"("tRNA (guanine(37)-N(1))-methyltransferase activity")|interpro:IPR002649("tRNA (guanine-N1-)-methyltransferase, bacteria")|interpro:IPR016009("tRNA (guanine-N1-)-methyltransferase")|interpro:IPR023148|interpro:IPR029026|interpro:IPR029028|dip:DIP-3681N|uniprotkb:O25766(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Specifically methylates guanosine-37 in various tRNAs figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:O9rQL0es2QZVKJFFGMJtNv3l0gE85962 intact-crc:7D91185D2A9FE237|rigid:8r4WinP8Z/DA8PyAiuBsbmk4qR0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25852 uniprotkb:O25979 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338523|imex:IM-22256-1211 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 intact-crc:9FDC6662F5374DE8|rigid:h0V13uwt76yvmV1U++WpcV1hTT4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25979 uniprotkb:O25933 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338541|imex:IM-22256-1212 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 intact-crc:0BB83E0287CF9D9A|rigid:+Ag4t6A0SdDsvYdr9LU+YB/yb/I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25979 uniprotkb:Q9ZKJ9 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338559|imex:IM-22256-1213 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:A1C5D6752BDED8B6|rigid:unfCvmBahjJIs1z0JN3M/Qmbms0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25996 uniprotkb:P56120 intact:EBI-7520993|intact:MINT-169998|ensemblbacteria:AAD08500 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 psi-mi:o25996_helpy(display_long)|uniprotkb:HP_1458(locus name) psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338577|imex:IM-22256-1214 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25996|refseq:WP_001293258.1|refseq:NP_208249.1|ensemblbacteria:AAD08500(transcript)|ensemblbacteria:HP_1458(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0015035"(protein-disulfide reductase activity)|go:"GO:0045454"(cell redox homeostasis)|go:"GO:0047134"("protein-disulfide reductase (NAD(P)) activity")|interpro:IPR013766(Thioredoxin domain)|interpro:IPR036249|go:"GO:0016671"(oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor)|dip:DIP-3185N|uniprotkb:O25996(identity) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7Kh9yi6ODVI5J9tirkODlnLHSZQ85962 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 intact-crc:1F6A041CCA185E51|rigid:DsJyFAXHty9QdIPYLPIl6cPaFFM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25996 uniprotkb:Q9ZKK8 intact:EBI-7520993|intact:MINT-169998|ensemblbacteria:AAD08500 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:o25996_helpy(display_long)|uniprotkb:HP_1458(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338595|imex:IM-22256-1215 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25996|refseq:WP_001293258.1|refseq:NP_208249.1|ensemblbacteria:AAD08500(transcript)|ensemblbacteria:HP_1458(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0015035"(protein-disulfide reductase activity)|go:"GO:0045454"(cell redox homeostasis)|go:"GO:0047134"("protein-disulfide reductase (NAD(P)) activity")|interpro:IPR013766(Thioredoxin domain)|interpro:IPR036249|go:"GO:0016671"(oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor)|dip:DIP-3185N|uniprotkb:O25996(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7Kh9yi6ODVI5J9tirkODlnLHSZQ85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:6CD86E5B127CC43D|rigid:L4mCXf2TlpAs8LxOoMdeRPH8/v0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25018 uniprotkb:O25999 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9269770|ensemblbacteria:AAD08508 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o25999_helpy(display_long)|uniprotkb:HP_1463(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338613|imex:IM-22256-1216 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_001202825.1|refseq:NP_208254.1|ensemblbacteria:AAD08508(transcript)|ensemblbacteria:HP_1463(gene)|uniprotkb:O25999(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:vnqTi4rhhwbuKNj4secKJfolRnI85962 intact-crc:DE589A5158D06DEC|rigid:4J3HXTTlr30iiTnFTBGHrAvxmkg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24987 uniprotkb:O26016 intact:EBI-7530990|intact:MINT-159439|ensemblbacteria:AAD07265 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 psi-mi:o24987_helpy(display_long)|uniprotkb:HP_0187(locus name) psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338631|imex:IM-22256-1217 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24987|ensemblbacteria:AAD07265(transcript)|ensemblbacteria:HP_0187(gene)|interpro:IPR004919(Protein of unknown function DUF262)|dip:DIP-3267N|uniprotkb:O24987(identity) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) psi-mi:"MI:0469"(intact) comment:mint function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:P1CE5ru6kMhgydYCXgBtjOw6mhw85962 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 intact-crc:B69E59FFEBA6E8D3|rigid:jX/D0Jgwli2KonAumsGdkY58mBQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26016 uniprotkb:O25193 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9268368|ensemblbacteria:AAD07521 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o25193_helpy(display_long)|uniprotkb:HP_0445(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338649|imex:IM-22256-1218 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) ensemblbacteria:AAD07521(transcript)|ensemblbacteria:HP_0445(gene)|uniprotkb:O25193(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:MA06LY47GdRMwnyLuB4R6iCKeyA85962 intact-crc:5193E77A4408EDCC|rigid:2g6xKKVT5q1LuIH8LpIosiQw0QU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26016 uniprotkb:O25288 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9269903|ensemblbacteria:AAD07634 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o25288_helpy(display_long)|uniprotkb:HP_0564(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338667|imex:IM-22256-1219 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) interpro:IPR031895|interpro:IPR010985(Ribbon-helix-helix)|interpro:IPR013321(Arc-type ribbon-helix-helix)|ensemblbacteria:AAD07634(transcript)|ensemblbacteria:HP_0564(gene)|go:"GO:0006355"(regulation of transcription, DNA-templated)|uniprotkb:O25288(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:FFpkeLw5rxnItz7SIWi8lwSvMKY85962 intact-crc:412E4974461733CE|rigid:XL9fbA3k70/Gn7I1oOcr3cx5Ye0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26016 uniprotkb:O25592 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-7598036|intact:MINT-162023|ensemblbacteria:AAD07991 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o25592_helpy(display_long)|uniprotkb:HP_0938(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338685|imex:IM-22256-1220 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) mint:O25592|refseq:WP_001862937.1|refseq:NP_207730.1|ensemblbacteria:AAD07991(transcript)|ensemblbacteria:HP_0938(gene)|interpro:IPR004919(Protein of unknown function DUF262)|dip:DIP-3591N|uniprotkb:O25592(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:ge8BhFYAGSLIpx+GRPzWkRXRKgQ85962 intact-crc:1C2E9C2DDD717A55|rigid:l40QgiaP87NpgSo6/AS0INvr9Fg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26016 uniprotkb:O25700 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9269936|ensemblbacteria:AAD08110 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:tatb_helpy(display_long)|uniprotkb:tatB(gene name)|psi-mi:tatB(display_short)|uniprotkb:HP_1060(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338703|imex:IM-22256-1221 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) refseq:WP_000467616.1|interpro:IPR018448|refseq:NP_207851.1|ensemblbacteria:AAD08110(transcript)|ensemblbacteria:HP_1060(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0008320"(protein transmembrane transporter activity)|go:"GO:0033281"(TAT protein transport complex)|go:"GO:0043953"(protein transport by the Tat complex)|uniprotkb:O25700(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:G9wfOTW7h3fGv2n3FF4BCwjZq1o85962 intact-crc:391093A1CC4F9644|rigid:qaoZF5X8VfxFudgyoQWs5U4UCtA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26016 uniprotkb:O25790 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9261675|ensemblbacteria:AAD08226 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:o25790_helpy(display_long)|uniprotkb:HP_1176(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338721|imex:IM-22256-1222 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) ensemblbacteria:AAD08226(transcript)|ensemblbacteria:HP_1176(gene)|uniprotkb:O25790(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:izsSQD+T9iojC71w4DenmR2DmK885962 intact-crc:09AF87FC766BCBFE|rigid:iCC2iGKbNC/yY92o7CvEqzSg1hQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34754 uniprotkb:O26016 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338739|imex:IM-22256-1223 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) psi-mi:"MI:0469"(intact) comment:mint function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 intact-crc:4F87B9D38F2D84F1|rigid:YL/ExGtpRBLl5XBKIshsVv3X0aM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26016 uniprotkb:Q9ZKV6 intact:EBI-7757713|ensemblbacteria:AAD08532|intact:MINT-171139 intact:EBI-9269982|ensemblbacteria:AAD06406 psi-mi:ex7s_helpy(display_long)|uniprotkb:xseB(gene name)|psi-mi:xseB(display_short)|uniprotkb:HP_1482(locus name)|uniprotkb:Exodeoxyribonuclease VII small subunit(gene name synonym) psi-mi:q9zkv6_helpj(display_long)|uniprotkb:jhp_0829(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338757|imex:IM-22256-1224 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08532(transcript)|ensemblbacteria:HP_1482(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006308"(DNA catabolic process)|go:"GO:0008855"(exodeoxyribonuclease VII activity)|go:"GO:0009318"(exodeoxyribonuclease VII complex)|interpro:IPR003761(Exonuclease VII, small subunit)|interpro:IPR037004|mint:O26016|refseq:NP_208273.1|refseq:WP_001150347.1|dip:DIP-3744N|uniprotkb:O26016(identity) ensemblbacteria:AAD06406(transcript)|ensemblbacteria:jhp_0829(gene)|uniprotkb:Q9ZKV6(identity) psi-mi:"MI:0469"(intact) function:Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Fwc7ScWMKmJC7L87/GByMIJ0dOE85962 rogid:PmSoJZhuDkthv65Gq30HtYlHvTA85963 intact-crc:A860F591C2371F66|rigid:UHO6lw9B/zPlOhakXcDLNgsEI+U false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25495 uniprotkb:O26022 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-7501863|intact:MINT-160847|ensemblbacteria:AAD08524 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:o26022_helpy(display_long)|uniprotkb:HP_1489(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338775|imex:IM-22256-1225 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) mint:O26022|refseq:WP_000753982.1|refseq:NP_208280.1|ensemblbacteria:AAD08524(transcript)|ensemblbacteria:HP_1489(gene)|go:"GO:0015288"(porin activity)|go:"GO:0015562"(efflux transmembrane transporter activity)|go:"GO:1990281"(efflux pump complex)|interpro:IPR003423(Outer membrane efflux protein)|dip:DIP-3153N|uniprotkb:O26022(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:DvGEoICc+QP5VAo9hv9nY0itK+E85962 intact-crc:7A67F507181F638C|rigid:GB0Xb4qapfSVRc4xdeMXJEuNGh0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25678 uniprotkb:O26024 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9270078|ensemblbacteria:AAD08533 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:y1491_helpy(display_long)|uniprotkb:HP_1491(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338793|imex:IM-22256-1226 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_000403632.1|interpro:IPR001204(Phosphate transporter)|refseq:NP_208282.1|ensemblbacteria:AAD08533(transcript)|ensemblbacteria:HP_1491(gene)|go:"GO:0005315"(inorganic phosphate transmembrane transporter activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0035435"(phosphate ion transmembrane transport)|uniprotkb:O26024(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:ETErnPoiUdxeLhY89j0p9g+R7pc85962 intact-crc:46756438CD4874BD|rigid:AqKjJcjcsk2P4NgS1Ov+1dWdOdA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26024 uniprotkb:O25990 intact:EBI-9270078|ensemblbacteria:AAD08533 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:y1491_helpy(display_long)|uniprotkb:HP_1491(locus name) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338811|imex:IM-22256-1227 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000403632.1|interpro:IPR001204(Phosphate transporter)|refseq:NP_208282.1|ensemblbacteria:AAD08533(transcript)|ensemblbacteria:HP_1491(gene)|go:"GO:0005315"(inorganic phosphate transmembrane transporter activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0035435"(phosphate ion transmembrane transport)|uniprotkb:O26024(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ETErnPoiUdxeLhY89j0p9g+R7pc85962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:F614861B798CC709|rigid:BubNGhp89NP2XzS+LNsnuCSNaVQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26023 uniprotkb:O26024 intact:EBI-7513993|intact:MINT-159596|ensemblbacteria:AAD08525 intact:EBI-9270078|ensemblbacteria:AAD08533 psi-mi:o26023_helpy(display_long)|uniprotkb:HP_1490(locus name) psi-mi:y1491_helpy(display_long)|uniprotkb:HP_1491(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338829|imex:IM-22256-1228 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26023|refseq:WP_000533332.1|refseq:NP_208281.1|ensemblbacteria:AAD08525(transcript)|ensemblbacteria:HP_1490(gene)|go:"GO:0016021"(integral component of membrane)|go:"GO:0050660"(flavin adenine dinucleotide binding)|interpro:IPR000644(Cystathionine beta-synthase, core)|interpro:IPR002550(Protein of unknown function DUF21)|interpro:IPR005170(Transporter-associated region)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR036318|interpro:IPR044751|dip:DIP-3088N|uniprotkb:O26023(identity) refseq:WP_000403632.1|interpro:IPR001204(Phosphate transporter)|refseq:NP_208282.1|ensemblbacteria:AAD08533(transcript)|ensemblbacteria:HP_1491(gene)|go:"GO:0005315"(inorganic phosphate transmembrane transporter activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0035435"(phosphate ion transmembrane transport)|uniprotkb:O26024(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:eeKp4WDSyic/8gFz1UlOWVWQ+IY85962 rogid:ETErnPoiUdxeLhY89j0p9g+R7pc85962 intact-crc:00388ED4D33E3973|rigid:2YA68XD5ScwktFz6W9D1L8Sp6zM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26033 uniprotkb:O25678 intact:EBI-7498734|intact:MINT-178933|ensemblbacteria:AAD08539 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 psi-mi:o26033_helpy(display_long)|uniprotkb:HP_1503(locus name) psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338847|imex:IM-22256-1229 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26033|refseq:WP_000650233.1|refseq:NP_208294.1|ensemblbacteria:AAD08539(transcript)|ensemblbacteria:HP_1503(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0043682"(P-type divalent copper transporter activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001757(ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter)|interpro:IPR006121(Heavy metal transport/detoxification protein)|interpro:IPR008250(E1-E2 ATPase-associated region)|interpro:IPR018303|interpro:IPR021993|interpro:IPR023214|interpro:IPR023298|interpro:IPR023299|interpro:IPR027256|interpro:IPR036163|interpro:IPR036412|dip:DIP-3099N|uniprotkb:O26033(identity) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ZZdeRxIWZLrGc1t1Aa/T9MJhCmc85962 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 intact-crc:A2FB56F88AA7CEAC|rigid:gLo7SMxl0YdPlj7MEELevfPWDtY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26033 uniprotkb:O25872 intact:EBI-7498734|intact:MINT-178933|ensemblbacteria:AAD08539 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:o26033_helpy(display_long)|uniprotkb:HP_1503(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338865|imex:IM-22256-1230 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26033|refseq:WP_000650233.1|refseq:NP_208294.1|ensemblbacteria:AAD08539(transcript)|ensemblbacteria:HP_1503(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|go:"GO:0043682"(P-type divalent copper transporter activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001757(ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter)|interpro:IPR006121(Heavy metal transport/detoxification protein)|interpro:IPR008250(E1-E2 ATPase-associated region)|interpro:IPR018303|interpro:IPR021993|interpro:IPR023214|interpro:IPR023298|interpro:IPR023299|interpro:IPR027256|interpro:IPR036163|interpro:IPR036412|dip:DIP-3099N|uniprotkb:O26033(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ZZdeRxIWZLrGc1t1Aa/T9MJhCmc85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:C2E51AF682EDE0A4|rigid:s04JtfJ4/+oYqRNa7yMHaLfBlK8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25310 uniprotkb:O26034 intact:EBI-7593516|intact:MINT-170357|ensemblbacteria:AAD07653 intact:EBI-9270212|ensemblbacteria:AAD08540 psi-mi:o25310_helpy(display_long)|uniprotkb:HP_0588(locus name) psi-mi:o26034_helpy(display_long)|uniprotkb:HP_1504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338883|imex:IM-22256-1231 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001096894.1|mint:O25310|refseq:NP_207383.1|ensemblbacteria:AAD07653(transcript)|ensemblbacteria:HP_0588(gene)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|interpro:IPR017896|interpro:IPR017900|dip:DIP-3580N|uniprotkb:O25310(identity) refseq:WP_000375247.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR007848(Methyltransferase small)|refseq:NP_208295.1|interpro:IPR029063|ensemblbacteria:AAD08540(transcript)|ensemblbacteria:HP_1504(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|uniprotkb:O26034(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:d2F6OJmDxce963GyGbtFhj1qc5Q85962 rogid:R1w4/PZ85EWwDASCAT59chQN8c485962 intact-crc:C05698307A82A296|rigid:3MLWU/PtDnMdCWVgTIJlzShGKTM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26034 uniprotkb:O26034 intact:EBI-9270212|ensemblbacteria:AAD08540 intact:EBI-9270212|ensemblbacteria:AAD08540 psi-mi:o26034_helpy(display_long)|uniprotkb:HP_1504(locus name) psi-mi:o26034_helpy(display_long)|uniprotkb:HP_1504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338901|imex:IM-22256-1232 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000375247.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR007848(Methyltransferase small)|refseq:NP_208295.1|interpro:IPR029063|ensemblbacteria:AAD08540(transcript)|ensemblbacteria:HP_1504(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|uniprotkb:O26034(identity) refseq:WP_000375247.1|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR007848(Methyltransferase small)|refseq:NP_208295.1|interpro:IPR029063|ensemblbacteria:AAD08540(transcript)|ensemblbacteria:HP_1504(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0032259"(methylation)|uniprotkb:O26034(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:R1w4/PZ85EWwDASCAT59chQN8c485962 rogid:R1w4/PZ85EWwDASCAT59chQN8c485962 intact-crc:0CBCE088E2A7FF92|rigid:lQRwQtMUUcO0cl/PietwhrRiSxQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26040 uniprotkb:Q9ZKV6 intact:EBI-7495634|intact:MINT-175534|ensemblbacteria:AAD08552 intact:EBI-9269982|ensemblbacteria:AAD06406 psi-mi:o26040_helpy(display_long)|uniprotkb:HP_1510(locus name) psi-mi:q9zkv6_helpj(display_long)|uniprotkb:jhp_0829(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338919|imex:IM-22256-1233 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26040|refseq:NP_208301.1|ensemblbacteria:AAD08552(transcript)|ensemblbacteria:HP_1510(gene)|go:"GO:0004150"(dihydroneopterin aldolase activity)|go:"GO:0006760"(folic acid-containing compound metabolic process)|interpro:IPR006157(Dihydroneopterin aldolase)|interpro:IPR043133|refseq:WP_000850887.1|dip:DIP-3219N|uniprotkb:O26040(identity) ensemblbacteria:AAD06406(transcript)|ensemblbacteria:jhp_0829(gene)|uniprotkb:Q9ZKV6(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tvLIbivK/QWzaIpOIXn75wM3QtE85962 rogid:PmSoJZhuDkthv65Gq30HtYlHvTA85963 intact-crc:C143C27A4370F4E7|rigid:fhtuXnNOxAUuBpic+rNP4626who false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25940 uniprotkb:O26051 intact:EBI-7623618|intact:MINT-159643|ensemblbacteria:AAD08438 intact:EBI-7505188|intact:MINT-184313|ensemblbacteria:AAD08562 psi-mi:o25940_helpy(display_long)|uniprotkb:HP_1390(locus name) psi-mi:recg_helpy(display_long)|uniprotkb:HP_1523(locus name)|uniprotkb:recG(gene name)|psi-mi:recG(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338937|imex:IM-22256-1234 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25940|refseq:WP_001294251.1|refseq:NP_208181.1|ensemblbacteria:AAD08438(transcript)|ensemblbacteria:HP_1390(gene)|dip:DIP-3717N|uniprotkb:O25940(identity) mint:O26051|refseq:WP_001158370.1|refseq:NP_208313.1|ensemblbacteria:AAD08562(transcript)|ensemblbacteria:HP_1523(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|dip:DIP-3433N|uniprotkb:O26051(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched duplex DNA (Y-DNA)" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5g2IDQeijLbJpMsUOFIQgyanXSI85962 rogid:ke9bF4Ta0YAFbT/HTSSH7/DbyFI85962 intact-crc:CE2D29ED70289442|rigid:Ak0vIn2gyitbwmdkNWBoZmMo73s false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26051 uniprotkb:Q9ZKJ9 intact:EBI-7505188|intact:MINT-184313|ensemblbacteria:AAD08562 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:recg_helpy(display_long)|uniprotkb:HP_1523(locus name)|uniprotkb:recG(gene name)|psi-mi:recG(display_short) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338955|imex:IM-22256-1235 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26051|refseq:WP_001158370.1|refseq:NP_208313.1|ensemblbacteria:AAD08562(transcript)|ensemblbacteria:HP_1523(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003678"(DNA helicase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006281"(DNA repair)|go:"GO:0006310"(DNA recombination)|go:"GO:0140603"(obsolete ATP hydrolysis activity)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR027417|dip:DIP-3433N|uniprotkb:O26051(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched duplex DNA (Y-DNA)" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ke9bF4Ta0YAFbT/HTSSH7/DbyFI85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:C40E10C033925C7E|rigid:BMkdvVQ4ixJdmoUxcuUe7tjAEyk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26069 uniprotkb:O25629 intact:EBI-7609332|intact:MINT-161790|ensemblbacteria:AAD08583 intact:EBI-7505515|intact:MINT-163208|ensemblbacteria:AAD08024 psi-mi:o26069_helpy(display_long)|uniprotkb:HP_1544(locus name) psi-mi:ftsa_helpy(display_long)|uniprotkb:ftsA(gene name)|psi-mi:ftsA(display_short)|uniprotkb:HP_0978(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338973|imex:IM-22256-1236 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26069|refseq:WP_001136019.1|refseq:NP_208335.1|ensemblbacteria:AAD08583(transcript)|ensemblbacteria:HP_1544(gene)|go:"GO:0000920"(septum digestion after cytokinesis)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0016021"(integral component of membrane)|interpro:IPR011055(Duplicated hybrid motif)|interpro:IPR016047(Peptidase M23)|rcsb pdb:5J1K|rcsb pdb:5J1L|rcsb pdb:5J1M|dip:DIP-3645N|uniprotkb:O26069(identity) mint:O25629|refseq:WP_000400290.1|refseq:NP_207769.1|ensemblbacteria:AAD08024(transcript)|ensemblbacteria:HP_0978(gene)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051301"(cell division)|interpro:IPR003494(Cell division protein FtsA)|interpro:IPR020823|interpro:IPR043129|dip:DIP-3124N|uniprotkb:O25629(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:This protein may be involved in anomalous filament growth. May be a component of the septum figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:iG/Bi9+hrZqpiT760Q4IIyXbrSQ85962 rogid:jRkQVJaEFRsCXTz0mUmRP13iyes85962 intact-crc:E348A6B0BBC84B5D|rigid:s5MfkEa4eq2nIzFS9MdFc0jePj0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25018 uniprotkb:O26080 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9338991|imex:IM-22256-1237 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:6255B2141B0BA10A|rigid:N/6SxJ0ZZ+dy5C7a8rrxewTl4lQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26080 uniprotkb:O25417 intact:EBI-9260543|ensemblbacteria:AAD08598 intact:EBI-9262268|ensemblbacteria:AAD07765 psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:o25417_helpy(display_long)|uniprotkb:HP_0715(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339009|imex:IM-22256-1238 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) refseq:WP_000353241.1|interpro:IPR030921|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:NP_207509.1|ensemblbacteria:AAD07765(transcript)|ensemblbacteria:HP_0715(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015803"(branched-chain amino acid transport)|go:"GO:0015807"(L-amino acid transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|uniprotkb:O25417(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 rogid:EtbfiHVp0ygQ/Yc+5Yl7Y4UZha485962 intact-crc:EA0F5F9045E4E554|rigid:8c9LnaN1i9OLiFYmmOmWkKfjAm8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26080 uniprotkb:Q9ZL79 intact:EBI-9260543|ensemblbacteria:AAD08598 intact:EBI-9262981|ensemblbacteria:AAD06276 psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:q9zl79_helpj(display_long)|uniprotkb:jhp_0701(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339027|imex:IM-22256-1239 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) interpro:IPR005358(Protein of unknown function UPF0153)|ensemblbacteria:AAD06276(transcript)|ensemblbacteria:jhp_0701(gene)|uniprotkb:Q9ZL79(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 rogid:lF/xSeC5ME9IUHouS6yOLLg1grE85963 intact-crc:92762C6483AD3943|rigid:4FOQKyG+GPSAZELrhNx9iARfX7o false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26080 uniprotkb:Q9ZN32 intact:EBI-9260543|ensemblbacteria:AAD08598 intact:EBI-9260158|ensemblbacteria:AAD05612 psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:clps_helpj(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:jhp_0028(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339045|imex:IM-22256-1240 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) refseq:WP_000781796.1|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|ensemblbacteria:AAD05612(transcript)|ensemblbacteria:jhp_0028(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|uniprotkb:Q9ZN32(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 rogid:VMspBf6bjCDv9RYhm8k2ufV4iNk85963 intact-crc:52413B89FC220213|rigid:I7+JVDy0lNJhufA5mj+oyr0X3e8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25272 uniprotkb:O26081 intact:EBI-7651076|ensemblbacteria:AAD07605|intact:MINT-161915 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 psi-mi:o25272_helpy(display_long)|uniprotkb:HP_0539(locus name) psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339063|imex:IM-22256-1241 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25272|ensemblbacteria:AAD07605(transcript)|ensemblbacteria:HP_0539(gene)|rcsb pdb:3ZCI|rcsb pdb:3ZCJ|rcsb pdb:4CII|rcsb pdb:4X5U|refseq:NP_207335.1|refseq:WP_000855299.1|dip:DIP-3544N|uniprotkb:O25272(identity) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:nQvUcaMFjvL0wOk4hyIagpwGQ5s85962 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 intact-crc:B88329D7F09F9ECF|rigid:0riohYMYDfKCFmNEZOtRnXwavbk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26081 uniprotkb:O25546 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339081|imex:IM-22256-1242 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:1DF826DA3143830E|rigid:F09c0CvpFRjimBQGq8dGSPz8XB8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26081 uniprotkb:O25676 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339099|imex:IM-22256-1243 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:93811E74A6AAFD99|rigid:5sGg+lrlebIZWZ/qePo7qqF/CEw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26081 uniprotkb:O26106 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-9270926|ensemblbacteria:AAD08626 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:y1587_helpy(display_long)|uniprotkb:HP_1587(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339117|imex:IM-22256-1244 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) interpro:IPR021150|ensemblbacteria:AAD08626(transcript)|ensemblbacteria:HP_1587(gene)|uniprotkb:O26106(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:FksYxTweFfC7hMK/69QLaW5M+j885962 intact-crc:77D5E867D8394FFE|rigid:bg3vFX9tTf57C2c3uvY6Lupq1Mk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26081 uniprotkb:P64657 intact:EBI-7500288|intact:MINT-160772|ensemblbacteria:AAD08599 intact:EBI-9270941|uniprotkb:O25027|ensemblbacteria:AAD07321 psi-mi:o26081_helpy(display_long)|uniprotkb:HP_1559(locus name) psi-mi:y245_helpy(display_long)|uniprotkb:HP_0245(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339135|imex:IM-22256-1245 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O26081|refseq:WP_000347783.1|refseq:NP_208350.1|ensemblbacteria:AAD08599(transcript)|ensemblbacteria:HP_1559(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|interpro:IPR019776|dip:DIP-3756N|uniprotkb:O26081(identity) refseq:WP_000609401.1|interpro:IPR016511(Uncharacterised conserved protein UCP007248)|refseq:NP_207043.1|ensemblbacteria:AAD07321(transcript)|ensemblbacteria:HP_0245(gene)|uniprotkb:P64657(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qWlz5MGg7WXaES7CTlPtdsz8jes85962 rogid:gVMsfhyi281rtqBnLmL/QQCpGXk85962 intact-crc:8DBDB9ACDA774F84|rigid:LeY/JlmBMYk9Sp/O5W5wqlMKEgA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26107 uniprotkb:O26107 intact:EBI-9271154|ensemblbacteria:AAD08627 intact:EBI-9271154|ensemblbacteria:AAD08627 psi-mi:y1588_helpy(display_long)|uniprotkb:HP_1588(locus name) psi-mi:y1588_helpy(display_long)|uniprotkb:HP_1588(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339153|imex:IM-22256-1246 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000323695.1|interpro:IPR021150|interpro:IPR025217|refseq:NP_208379.1|ensemblbacteria:AAD08627(transcript)|ensemblbacteria:HP_1588(gene)|uniprotkb:O26107(identity) refseq:WP_000323695.1|interpro:IPR021150|interpro:IPR025217|refseq:NP_208379.1|ensemblbacteria:AAD08627(transcript)|ensemblbacteria:HP_1588(gene)|uniprotkb:O26107(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:IS2aJqhNqNM78vlHnSxufaefhn085962 rogid:IS2aJqhNqNM78vlHnSxufaefhn085962 intact-crc:7156D716CF2812C7|rigid:g/jM9y1H2KrVfzRzL4HjOe+l5SQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24926 uniprotkb:O34461 intact:EBI-7494854|intact:MINT-159805|ensemblbacteria:AAD07168 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:queh_helpy(display_long)|uniprotkb:Queuosine biosynthesis protein QueH(gene name synonym)|uniprotkb:HP_0100(locus name)|uniprotkb:queH(gene name)|psi-mi:queH(display_short) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339171|imex:IM-22256-1247 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24926|refseq:NP_206900.1|refseq:WP_000905219.1|ensemblbacteria:AAD07168(transcript)|ensemblbacteria:HP_0100(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0052693"(epoxyqueuosine reductase activity)|interpro:IPR003828(Protein of unknown function DUF208)|dip:DIP-3170N|uniprotkb:O24926(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wq9kyscW1vuBxHL6xNZc6vRBdys85962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:93439D6AD3879A40|rigid:j1Qn8SduSebenIZWZpgprxWX8Sg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34461 uniprotkb:O25261 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-9263582|ensemblbacteria:AAD07593 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o25261_helpy(display_long)|uniprotkb:HP_0526(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339189|imex:IM-22256-1248 author score:A and B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:WP_000418809.1|interpro:IPR015139(Cag pathogenicity island protein, CagZ)|refseq:NP_207322.1|rcsb pdb:6JHO|interpro:IPR036303|ensemblbacteria:AAD07593(transcript)|ensemblbacteria:HP_0526(gene)|uniprotkb:O25261(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system. The interaction was found using two clones with identical sequence that gave results classified in both the A and B confidence groups.|author-confidence:A and B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:9tGFgyPZpUWZ7K5r04mdtqRhhMs85962 intact-crc:C2DF36FA36BFDE85|rigid:cm+kiTsVia8KGHopLlJUfhVOixU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34461 uniprotkb:O25546 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339207|imex:IM-22256-1249 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:DF26E78743FF3760|rigid:1m81j3OwEDuHaznGWpH1arMFD0w false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34461 uniprotkb:O25664 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339225|imex:IM-22256-1250 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:4BDD7EF736079715|rigid:xfg5O5nGIN+9Y0gMSgxlqpkHEdA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34461 uniprotkb:O25676 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339243|imex:IM-22256-1251 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:515FDF29D41649F7|rigid:NOpoQkR2jL7wJnLePVk6fG/qZro false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34461 uniprotkb:O25878 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 intact:EBI-7617898|intact:MINT-174132|ensemblbacteria:AAD08334 psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:o25878_helpy(display_long)|uniprotkb:HP_1291(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339261|imex:IM-22256-1252 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) refseq:WP_001149282.1|mint:O25878|refseq:NP_208083.1|ensemblbacteria:AAD08334(transcript)|ensemblbacteria:HP_1291(gene)|go:"GO:0004788"(thiamine diphosphokinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006772"(thiamine metabolic process)|go:"GO:0009229"(thiamine diphosphate biosynthetic process)|go:"GO:0016301"(kinase activity)|interpro:IPR006282(Thiamin pyrophosphokinase)|interpro:IPR007371(Thiamin pyrophosphokinase, catalytic region)|interpro:IPR036759|dip:DIP-3699N|uniprotkb:O25878(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 rogid:+gZVP3dg7r1utx+xGirwuV54O2o85962 intact-crc:39D89C1D85535DA6|rigid:Ak9fS4o11a1hMQz64Cyi2NDktPQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O26058 uniprotkb:O34461 intact:EBI-7629377|ensemblbacteria:AAD08569|intact:MINT-168810 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:o26058_helpy(display_long)|uniprotkb:HP_1530(locus name) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339279|imex:IM-22256-1253 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08569(transcript)|ensemblbacteria:HP_1530(gene)|go:"GO:0003824"(catalytic activity)|go:"GO:0009116"(nucleoside metabolic process)|interpro:IPR035994|refseq:WP_000923009.1|mint:O26058|refseq:NP_208320.1|dip:DIP-3727N|uniprotkb:O26058(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VxyJAzRUTtAkNRKMW+n2ffKWtq085962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:F1C78AFA6CCF3B9F|rigid:eMkqdOMYp8FY9J7OSIdy3DKslY4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25186 uniprotkb:O34995 intact:EBI-7565458|intact:MINT-168185|ensemblbacteria:AAD07507 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:o25186_helpy(display_long)|uniprotkb:HP_0436(locus name) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339297|imex:IM-22256-1254 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25186|ensemblbacteria:AAD07507(transcript)|ensemblbacteria:HP_0436(gene)|dip:DIP-3428N|uniprotkb:O25186(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JFzQaasO85wjj7zgY5wO/TfZaRk85962 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:072EBAD497988A59|rigid:xcnCUh6p2y53pNYaEuKrPynxtW4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZKK8 uniprotkb:O34995 intact:EBI-9264174|ensemblbacteria:AAD06505 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339315|imex:IM-22256-1255 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:7610202040DD1ADF|rigid:U9gPu1A0yfzfr1FndmRJEILt/sQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0R3 uniprotkb:Q9ZKK8 intact:EBI-7508075|intact:MINT-173683|uniprotkb:P48225|ensemblbacteria:AAD07081 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:ch10_helpy(display_long)|uniprotkb:groES(gene name)|psi-mi:groES(display_short)|uniprotkb:10 kDa chaperonin(gene name synonym)|uniprotkb:Chaperonin-10(gene name synonym)|uniprotkb:groS(gene name synonym)|uniprotkb:hsp10(gene name synonym)|uniprotkb:hspA(gene name synonym)|uniprotkb:mopB(gene name synonym)|uniprotkb:HP_0011(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339333|imex:IM-22256-1256 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0R3|interpro:IPR011032(GroES-like)|interpro:IPR020818|interpro:IPR018369|refseq:NP_206813.1|refseq:WP_000671934.1|go:"GO:0046872"(metal ion binding)|go:"GO:0051082"(unfolded protein binding)|go:"GO:0051085"(chaperone cofactor-dependent protein refolding)|go:"GO:0051087"(chaperone binding)|go:"GO:0042802"(identical protein binding)|ensemblbacteria:AAD07081(transcript)|ensemblbacteria:HP_0011(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|interpro:IPR037124|uniprotkb:P0A0R3(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) crc64:5A965CD4C2FF014A|comment:mint|function:Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ke/5O3dHWuGYcikAvghNEjDPNT885962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:292F36A3196769F4|rigid:TE5RALu8ajncxqZ32N+onHqPk6M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:O25498 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9262160|ensemblbacteria:AAD07873 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o25498_helpy(display_long)|uniprotkb:HP_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339351|imex:IM-22256-1257 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000437145.1|refseq:NP_207613.1|ensemblbacteria:AAD07873(transcript)|ensemblbacteria:HP_0820(gene)|uniprotkb:O25498(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:cBhLCWEqc9/QdJfjtCvo7ltwdJs85962 intact-crc:F0C0C85C44461C68|rigid:O8jtTCG4cPs8YYJkANhw9Zt835M false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:O25546 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339369|imex:IM-22256-1258 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:C2461DFB40630B6C|rigid:8WXi1RT4b/Q2JqhHKoHdlw8bttQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:O25792 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9271487|ensemblbacteria:AAD08224 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:nupc_helpy(display_long)|uniprotkb:nupC(gene name)|psi-mi:nupC(display_short)|uniprotkb:HP_1180(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339387|imex:IM-22256-1259 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000577889.1|interpro:IPR002668(Na+ dependent nucleoside transporter)|interpro:IPR008276(Concentrative nucleoside transporter)|interpro:IPR011657(Na+ dependent nucleoside transporter, C-terminal)|interpro:IPR018270|refseq:NP_207971.1|ensemblbacteria:AAD08224(transcript)|ensemblbacteria:HP_1180(gene)|go:"GO:0005337"(nucleoside transmembrane transporter activity)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015293"(symporter activity)|go:"GO:1901642"(nucleoside transmembrane transport)|uniprotkb:O25792(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:uW+OMLc2zhIVjY1pLFLFP5uUrkM85962 intact-crc:489503DF1E8C4F32|rigid:Jme0sKhy5EDldUKWXiHd2SWiUbc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25869 uniprotkb:P0A0U4 intact:EBI-7568244|intact:MINT-185628|ensemblbacteria:AAD08326 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 psi-mi:trpe_helpy(display_long)|uniprotkb:HP_1282(locus name)|uniprotkb:trpE(gene name)|psi-mi:trpE(display_short) psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339405|imex:IM-22256-1260 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000624398.1|mint:O25869|refseq:NP_208074.1|ensemblbacteria:AAD08326(transcript)|ensemblbacteria:HP_1282(gene)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004049"(anthranilate synthase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR005257(Anthranilate synthase component I, TrpE)|interpro:IPR005801(Anthranilate synthase component I and chorismate binding protein)|interpro:IPR006805(Anthranilate synthase component I, N-terminal)|interpro:IPR015890(Chorismate binding, C-terminal)|interpro:IPR019999|dip:DIP-3432N|uniprotkb:O25869(identity) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) psi-mi:"MI:0469"(intact) comment:mint function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:eODPzT83iSUwQ2vz92ncSQTHO2k85962 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 intact-crc:8C5003ECDE1AECF2|rigid:FOdby6vnWDiJ9fumhIsc4aMyvfQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:Q9ZKW4 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9261600|ensemblbacteria:AAD06393 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:q9zkw4_helpj(display_long)|uniprotkb:jhp_0820(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339423|imex:IM-22256-1261 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) interpro:IPR002495(Glycosyl transferase, family 8)|interpro:IPR029044|ensemblbacteria:AAD06393(transcript)|ensemblbacteria:jhp_0820(gene)|go:"GO:0016757"(glycosyltransferase activity)|uniprotkb:Q9ZKW4(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:zzpEOeYpHTao8r++Ew1T+LCI5jA85963 intact-crc:A750650445577833|rigid:XfsOidIXDjmwNtebYmKhbGZaCjU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:Q9ZLN8 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9271553|ensemblbacteria:AAD06111 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:q9zln8_helpj(display_long)|uniprotkb:jhp_0540(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339441|imex:IM-22256-1262 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_001224732.1|interpro:IPR036412|interpro:IPR006439(HAD-superfamily hydrolase, subfamily IA, variant 1)|interpro:IPR023214|ensemblbacteria:AAD06111(transcript)|ensemblbacteria:jhp_0540(gene)|go:"GO:0016787"(hydrolase activity)|uniprotkb:Q9ZLN8(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:U+MKG/h+wX/PzlVmobCrnRUZ4XY85963 intact-crc:A895B02337C6127F|rigid:BdmTat0OXtkDnAnS788pkapGe/0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0V0 uniprotkb:O25488 intact:EBI-9271571|uniprotkb:P53436|ensemblbacteria:AAD08494 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:lpp20_helpy(display_long)|uniprotkb:lpp20(gene name)|psi-mi:lpp20(display_short)|uniprotkb:HP_1456(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339459|imex:IM-22256-1263 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000795978.1|interpro:IPR002217(Lipoprotein LPP20)|interpro:IPR024952|refseq:NP_208247.1|ensemblbacteria:AAD08494(transcript)|go:"GO:0009279"(cell outer membrane)|ensemblbacteria:HP_1456(gene)|uniprotkb:P0A0V0(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+J2NrQ8kjNJtBXlIsf5mNRaaE4U85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:5652827AEFBBB9DF|rigid:DBaH6RtC3940GDfrk/BsRm3Wio4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25687 uniprotkb:P0A0X4 intact:EBI-7605525|intact:MINT-160910|ensemblbacteria:AAD08091 intact:EBI-7607319|uniprotkb:P56019|uniprotkb:Q9R787|intact:MINT-160916|ensemblbacteria:AAD08241 psi-mi:rimp_helpy(display_long)|uniprotkb:HP_1046(locus name)|uniprotkb:rimP(gene name)|psi-mi:rimP(display_short) psi-mi:rs12_helpy(display_long)|uniprotkb:rpsL(gene name)|psi-mi:rpsL(display_short)|uniprotkb:HP_1197(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339477|imex:IM-22256-1264 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000162267.1|mint:O25687|refseq:NP_207836.1|ensemblbacteria:AAD08091(transcript)|ensemblbacteria:HP_1046(gene)|go:"GO:0000028"(ribosomal small subunit assembly)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|interpro:IPR003728(Protein of unknown function DUF150)|interpro:IPR028989|interpro:IPR028998|interpro:IPR035956|dip:DIP-3627N|uniprotkb:O25687(identity) refseq:WP_001142321.1|interpro:IPR005679(Ribosomal protein S12, bacterial-type)|interpro:IPR006032(Ribosomal protein S12/S23)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|mint:P0A0X4|refseq:NP_207988.1|ensemblbacteria:AAD08241(transcript)|ensemblbacteria:HP_1197(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0046677"(response to antibiotic)|uniprotkb:P0A0X4(identity) psi-mi:"MI:0469"(intact) comment:mint function:With S4 and S5 plays an important role in translational accuracy|comment:mint|function:Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb0PolTj0VOBI57lKdAFefuz9Fk85962 rogid:nGLO1EcHlMoe/ASWRqCunOgMDOo85962 intact-crc:37AF697579353558|rigid:RhXMZklk1XrepmyFuiVYHmQSQzI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P25178 uniprotkb:O25912 intact:EBI-9271678|ensemblbacteria:AAD07145 intact:EBI-9268958|ensemblbacteria:AAD08408 psi-mi:lspa_helpy(display_long)|uniprotkb:lspA(gene name)|psi-mi:lspA(display_short)|uniprotkb:Prolipoprotein signal peptidase(gene name synonym)|uniprotkb:Signal peptidase II(gene name synonym)|uniprotkb:ureD(gene name synonym)|uniprotkb:HP_0074(locus name) psi-mi:o25912_helpy(display_long)|uniprotkb:HP_1358(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339495|imex:IM-22256-1265 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000921378.1|interpro:IPR001872(Peptidase A8, signal peptidase II)|refseq:NP_206874.1|ensemblbacteria:AAD07145(transcript)|ensemblbacteria:HP_0074(gene)|go:"GO:0004190"(aspartic-type endopeptidase activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0016021"(integral component of membrane)|uniprotkb:P25178(identity) refseq:WP_000953192.1|refseq:NP_208150.1|ensemblbacteria:AAD08408(transcript)|ensemblbacteria:HP_1358(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25912(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a CEN low-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lRvGq7OFiPinP6tQjumk98JRgYo85962 rogid:2nZmrBMZGRSynryx03OjQWwlpuc85962 intact-crc:53889C409B5AA543|rigid:6ne+paxDYP+X7wipCIgeA4J5AH8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P43313 uniprotkb:O34461 intact:EBI-7678903|ensemblbacteria:AAD07308|uniprotkb:Q9F7B8|uniprotkb:Q9F7B5|uniprotkb:Q9F7B9|uniprotkb:Q9KW50|uniprotkb:Q9F7B7|uniprotkb:Q64EY0|uniprotkb:Q9L765|uniprotkb:Q9L763|uniprotkb:Q9L766|uniprotkb:Q9K2M7|uniprotkb:Q9L764|uniprotkb:Q9L762|uniprotkb:Q9F7B4|uniprotkb:Q9F7B6|intact:MINT-173438|uniprotkb:Q932V4|uniprotkb:Q9K2U7 intact:EBI-7506839|intact:MINT-159518|ensemblbacteria:AAD07493|ensemblbacteria:AAD08453 psi-mi:dps_helpy(display_long)|uniprotkb:HP_0243(locus name)|uniprotkb:dps(gene name)|psi-mi:dps(display_short)|uniprotkb:napA(gene name synonym)|uniprotkb:Neutrophil-activating protein A(gene name synonym)|uniprotkb:HP-NAP(gene name synonym)|uniprotkb:Bacterioferritin(gene name synonym) psi-mi:o34461_helpy(display_long)|uniprotkb:HP_0424(locus name)|uniprotkb:HP_1411(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339513|imex:IM-22256-1266 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0016722"(oxidoreductase activity, acting on metal ions)|interpro:IPR002177(DNA-binding protein Dps)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR023188|rcsb pdb:1JI4|mint:P43313|ensemblbacteria:AAD07308(transcript)|ensemblbacteria:HP_0243(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|refseq:NP_207041.1|refseq:WP_000846461.1|dip:DIP-3296N|uniprotkb:P43313(identity) refseq:WP_000923350.1|refseq:NP_208202.1|refseq:NP_207222.1|ensemblbacteria:AAD07493(transcript)|ensemblbacteria:AAD08453(transcript)|ensemblbacteria:HP_0424(gene)|ensemblbacteria:HP_1411(gene)|dip:DIP-3068N|mint:O34461|uniprotkb:O34461(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). Required for the survival in the presence of oxidative stress. Dps is also a virulence factor that activates neutrophils, mast cells and monocytes. It binds to neutrophil-glycosphingolipids and to sulfated carbohydrates on mucin. It might have a role in the accumulation of neutrophils and monocytes at the site of infection. Induces superoxide anion generation, adhesion and chemotaxis of neutrophils, through a pertussis toxin-sensitive pathway involving MAP kinases" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2dXM7cdsOnwPgTpeJvQfWjSqyN085962 rogid:r4EB3vlIUX+PsHesHirDNNtFsx085962 intact-crc:E252E8912B5E1527|rigid:Ew03kT7iYOtKYW+uCy8oS28x9RY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P43313 uniprotkb:O34754 intact:EBI-7678903|ensemblbacteria:AAD07308|uniprotkb:Q9F7B8|uniprotkb:Q9F7B5|uniprotkb:Q9F7B9|uniprotkb:Q9KW50|uniprotkb:Q9F7B7|uniprotkb:Q64EY0|uniprotkb:Q9L765|uniprotkb:Q9L763|uniprotkb:Q9L766|uniprotkb:Q9K2M7|uniprotkb:Q9L764|uniprotkb:Q9L762|uniprotkb:Q9F7B4|uniprotkb:Q9F7B6|intact:MINT-173438|uniprotkb:Q932V4|uniprotkb:Q9K2U7 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 psi-mi:dps_helpy(display_long)|uniprotkb:HP_0243(locus name)|uniprotkb:dps(gene name)|psi-mi:dps(display_short)|uniprotkb:napA(gene name synonym)|uniprotkb:Neutrophil-activating protein A(gene name synonym)|uniprotkb:HP-NAP(gene name synonym)|uniprotkb:Bacterioferritin(gene name synonym) psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339531|imex:IM-22256-1267 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0016722"(oxidoreductase activity, acting on metal ions)|interpro:IPR002177(DNA-binding protein Dps)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR023188|rcsb pdb:1JI4|mint:P43313|ensemblbacteria:AAD07308(transcript)|ensemblbacteria:HP_0243(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006879"(cellular iron ion homeostasis)|go:"GO:0008199"(ferric iron binding)|refseq:NP_207041.1|refseq:WP_000846461.1|dip:DIP-3296N|uniprotkb:P43313(identity) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). Required for the survival in the presence of oxidative stress. Dps is also a virulence factor that activates neutrophils, mast cells and monocytes. It binds to neutrophil-glycosphingolipids and to sulfated carbohydrates on mucin. It might have a role in the accumulation of neutrophils and monocytes at the site of infection. Induces superoxide anion generation, adhesion and chemotaxis of neutrophils, through a pertussis toxin-sensitive pathway involving MAP kinases" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2dXM7cdsOnwPgTpeJvQfWjSqyN085962 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 intact-crc:0A949CCB73FB9F7F|rigid:rp4ig25Z6N/8Q8NSO3ylRoyRqnk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P48370 uniprotkb:O25290 intact:EBI-7509054|intact:MINT-185350|ensemblbacteria:AAD07753 intact:EBI-9263938|ensemblbacteria:AAD07622 psi-mi:gyra_helpy(display_long)|uniprotkb:gyrA(gene name)|psi-mi:gyrA(display_short)|uniprotkb:HP_0701(locus name) psi-mi:dapf_helpy(display_long)|uniprotkb:dapF(gene name)|psi-mi:dapF(display_short)|uniprotkb:PLP-independent amino acid racemase(gene name synonym)|uniprotkb:HP_0566(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339549|imex:IM-22256-1268 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P48370|refseq:NP_207495.1|refseq:WP_001153763.1|ensemblbacteria:AAD07753(transcript)|ensemblbacteria:HP_0701(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003918"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity")|go:"GO:0005524"(ATP binding)|go:"GO:0005694"(chromosome)|go:"GO:0005737"(cytoplasm)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0006265"(DNA topological change)|go:"GO:0009330"("DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex")|interpro:IPR002205(DNA topoisomerase, type IIA, subunit A or C-terminal)|interpro:IPR005743(DNA gyrase, subunit A)|interpro:IPR013757(DNA topoisomerase, type IIA, subunit A, alpha-helical)|interpro:IPR013758(DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta)|interpro:IPR013760(DNA topoisomerase, type IIA, central)|interpro:IPR035516|interpro:IPR006691(DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel)|dip:DIP-3353N|uniprotkb:P48370(identity) refseq:WP_000232462.1|interpro:IPR001653(Diaminopimelate epimerase)|interpro:IPR018510|refseq:NP_207361.1|ensemblbacteria:AAD07622(transcript)|ensemblbacteria:HP_0566(gene)|go:"GO:0005829"(cytosol)|go:"GO:0008837"(diaminopimelate epimerase activity)|go:"GO:0009089"(lysine biosynthetic process via diaminopimelate)|uniprotkb:O25290(identity) psi-mi:"MI:0469"(intact) function:DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:39Si1CoRFTywNr8/kdJOHHbZahU85962 rogid:C/mjrCaBBQRuR/+zZbeIDy3WX3U85962 intact-crc:B1AD1AE212DE7F8C|rigid:e/Op64JTtZe0EfJH+ZiMINf/1xY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P52093 uniprotkb:O26006 intact:EBI-7685873|ensemblbacteria:AAD07712|intact:MINT-167098 intact:EBI-9260077|ensemblbacteria:AAD08511 psi-mi:ftn_helpy(display_long)|uniprotkb:ftnA(gene name)|psi-mi:ftnA(display_short)|uniprotkb:pfr(gene name synonym)|uniprotkb:HP_0653(locus name) psi-mi:o26006_helpy(display_long)|uniprotkb:HP_1471(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339567|imex:IM-22256-1269 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P52093|refseq:WP_000949202.1|dip:DIP-3470N|ensemblbacteria:AAD07712(transcript)|ensemblbacteria:HP_0653(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006826"(iron ion transport)|go:"GO:0006880"(intracellular sequestering of iron ion)|go:"GO:0008198"(ferrous iron binding)|go:"GO:0008199"(ferric iron binding)|interpro:IPR001519(Ferritin, N-terminal)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR041719|rcsb pdb:5U1B|refseq:NP_207447.1|uniprotkb:P52093(identity) interpro:IPR000055(Restriction endonuclease, type I, S subunit, EcoBI)|refseq:NP_208262.1|ensemblbacteria:AAD08511(transcript)|ensemblbacteria:HP_1471(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006304"(DNA modification)|uniprotkb:O26006(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Iron-storage protein - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AmYwZV5wIllcC92/nomMGURsRKQ85962 rogid:kutCG3yhuSFassWodi2b+4pXCZA85962 intact-crc:B27B2069456C0389|rigid:GLxKz5AU7Y82PhBZ7VKa4rs6PQw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34754 uniprotkb:P52093 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7685873|ensemblbacteria:AAD07712|intact:MINT-167098 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:ftn_helpy(display_long)|uniprotkb:ftnA(gene name)|psi-mi:ftnA(display_short)|uniprotkb:pfr(gene name synonym)|uniprotkb:HP_0653(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339585|imex:IM-22256-1270 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) mint:P52093|refseq:WP_000949202.1|dip:DIP-3470N|ensemblbacteria:AAD07712(transcript)|ensemblbacteria:HP_0653(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006826"(iron ion transport)|go:"GO:0006880"(intracellular sequestering of iron ion)|go:"GO:0008198"(ferrous iron binding)|go:"GO:0008199"(ferric iron binding)|interpro:IPR001519(Ferritin, N-terminal)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR041719|rcsb pdb:5U1B|refseq:NP_207447.1|uniprotkb:P52093(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Iron-storage protein figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:AmYwZV5wIllcC92/nomMGURsRKQ85962 intact-crc:9F66D331D4ECEF78|rigid:66cKeLF68VTkcCmrcl0hQXzo9nk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P52093 uniprotkb:Q9ZJN3 intact:EBI-7685873|ensemblbacteria:AAD07712|intact:MINT-167098 intact:EBI-9264413|ensemblbacteria:AAD06844 psi-mi:ftn_helpy(display_long)|uniprotkb:ftnA(gene name)|psi-mi:ftnA(display_short)|uniprotkb:pfr(gene name synonym)|uniprotkb:HP_0653(locus name) psi-mi:q9zjn3_helpj(display_long)|uniprotkb:JHP1272(gene name)|psi-mi:JHP1272(display_short)|uniprotkb:jhp_1272(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339603|imex:IM-22256-1271 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P52093|refseq:WP_000949202.1|dip:DIP-3470N|ensemblbacteria:AAD07712(transcript)|ensemblbacteria:HP_0653(gene)|go:"GO:0004322"(ferroxidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006826"(iron ion transport)|go:"GO:0006880"(intracellular sequestering of iron ion)|go:"GO:0008198"(ferrous iron binding)|go:"GO:0008199"(ferric iron binding)|interpro:IPR001519(Ferritin, N-terminal)|interpro:IPR008331(Ferritin and Dps)|interpro:IPR009040(Ferritin-like)|interpro:IPR009078(Ferritin/ribonucleotide reductase-like)|interpro:IPR012347(Ferritin-related)|interpro:IPR041719|rcsb pdb:5U1B|refseq:NP_207447.1|uniprotkb:P52093(identity) interpro:IPR003356(N-6 DNA methylase)|interpro:IPR029063|interpro:IPR041635|ensemblbacteria:AAD06844(transcript)|ensemblbacteria:jhp_1272(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0006306"(DNA methylation)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZJN3(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Iron-storage protein - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AmYwZV5wIllcC92/nomMGURsRKQ85962 rogid:2Btvw0CrXOSJ1SBiIVCTxact1hc85963 intact-crc:1DBC5A2BBEA333C1|rigid:0FaDH+rzQSwZQDLsxIk/gYOV8nM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25775 uniprotkb:P55971 intact:EBI-7579146|intact:MINT-163906|ensemblbacteria:AAD08206 intact:EBI-9271929|ensemblbacteria:AAD07965 psi-mi:ybey_helpy(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:HP_1160(locus name) psi-mi:g3p_helpy(display_long)|uniprotkb:gapA(gene name)|psi-mi:gapA(display_short)|uniprotkb:gap(gene name synonym)|uniprotkb:HP_0921(locus name)|uniprotkb:NAD-dependent glyceraldehyde-3-phosphate dehydrogenase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339621|imex:IM-22256-1272 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000889553.1|mint:O25775|refseq:NP_207951.1|ensemblbacteria:AAD08206(transcript)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005737"(cytoplasm)|ensemblbacteria:HP_1160(gene)|go:"GO:0006364"(rRNA processing)|go:"GO:0008270"(zinc ion binding)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|dip:DIP-3492N|uniprotkb:O25775(identity) refseq:WP_000688567.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:NP_207713.1|ensemblbacteria:AAD07965(transcript)|ensemblbacteria:HP_0921(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:P55971(identity) psi-mi:"MI:0469"(intact) function:May have metalloprotease activity|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6uETng3OIUBRBpPD/m87BBi5ieM85962 rogid:o/mHytn4OtdOuzxONvF9MQmi2ck85962 intact-crc:2DCE0ADAD910CA05|rigid:kAlivPCFEC9T1psakiqolGiL1Xs false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:P55971 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9271929|ensemblbacteria:AAD07965 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:g3p_helpy(display_long)|uniprotkb:gapA(gene name)|psi-mi:gapA(display_short)|uniprotkb:gap(gene name synonym)|uniprotkb:HP_0921(locus name)|uniprotkb:NAD-dependent glyceraldehyde-3-phosphate dehydrogenase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339639|imex:IM-22256-1273 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_000688567.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:NP_207713.1|ensemblbacteria:AAD07965(transcript)|ensemblbacteria:HP_0921(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:P55971(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:o/mHytn4OtdOuzxONvF9MQmi2ck85962 intact-crc:FD7F9CA2A7F3C7B9|rigid:30PBcf6oul9cvU2f6hBnCHaDOEo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P94845 uniprotkb:P55971 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 intact:EBI-9271929|ensemblbacteria:AAD07965 psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:g3p_helpy(display_long)|uniprotkb:gapA(gene name)|psi-mi:gapA(display_short)|uniprotkb:gap(gene name synonym)|uniprotkb:HP_0921(locus name)|uniprotkb:NAD-dependent glyceraldehyde-3-phosphate dehydrogenase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339657|imex:IM-22256-1274 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) refseq:WP_000688567.1|interpro:IPR036291|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|refseq:NP_207713.1|ensemblbacteria:AAD07965(transcript)|ensemblbacteria:HP_0921(gene)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|uniprotkb:P55971(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 rogid:o/mHytn4OtdOuzxONvF9MQmi2ck85962 intact-crc:9AFAB984EE967DF6|rigid:hpWjYZt6X6mDX9mkHRx+Ng4Mqc8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24980 uniprotkb:P55976 intact:EBI-7552025|intact:MINT-165751|ensemblbacteria:AAD07248 intact:EBI-9271993|ensemblbacteria:AAD08249 psi-mi:psei_helpy(display_long)|uniprotkb:pseI(gene name)|psi-mi:pseI(display_short)|uniprotkb:Pseudaminic acid biosynthesis protein I(gene name synonym)|uniprotkb:HP_0178(locus name) psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339675|imex:IM-22256-1275 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000941291.1|mint:O24980|refseq:NP_206977.1|ensemblbacteria:AAD07248(transcript)|ensemblbacteria:HP_0178(gene)|go:"GO:0016051"(carbohydrate biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0047444"(N-acylneuraminate-9-phosphate synthase activity)|go:"GO:0070085"(glycosylation)|interpro:IPR006190(Antifreeze-like/N-acetylneuraminic acid synthase C-terminal)|interpro:IPR013132(N-acetylneuraminic acid synthase, N-terminal)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR013974(SAF domain)|interpro:IPR020030|interpro:IPR036732|dip:DIP-3369N|uniprotkb:O24980(identity) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:uZp/YwItniAjhnfvNYjPS7d1M+U85962 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 intact-crc:542047591227BDB4|rigid:+X9eULMkxt9X6pTxlFpviNJZFKI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25852 uniprotkb:P55976 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-9271993|ensemblbacteria:AAD08249 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339693|imex:IM-22256-1276 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 intact-crc:1161657EDB502ACD|rigid:XNvXVyrzoTsqicsdW+YeE+JgTnE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P55976 uniprotkb:O25983 intact:EBI-9271993|ensemblbacteria:AAD08249 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339711|imex:IM-22256-1277 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:882665C48EA02098|rigid:+1jtozX+fSajssZyaevpJ7fabkk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZKJ1 uniprotkb:P55976 intact:EBI-9262335|ensemblbacteria:AAD06522 intact:EBI-9271993|ensemblbacteria:AAD08249 psi-mi:q9zkj1_helpj(display_long)|uniprotkb:jhp_0944(locus name) psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339729|imex:IM-22256-1278 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06522(transcript)|ensemblbacteria:jhp_0944(gene)|uniprotkb:Q9ZKJ1(identity) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1R4utf6FSlcyXPNx5xhZw0DvxCU85963 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 intact-crc:C38FA405552A38B8|rigid:7EmOjNYg42Ci/Ezh/2nqOLf3GU4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P55976 uniprotkb:Q9ZKJ9 intact:EBI-9271993|ensemblbacteria:AAD08249 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339747|imex:IM-22256-1279 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:1585FB77FA01AB67|rigid:5ZGSd88hUVpjgAio+XfARcIXAvw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZMH3 uniprotkb:P55976 intact:EBI-9265592|ensemblbacteria:AAD05823 intact:EBI-9271993|ensemblbacteria:AAD08249 psi-mi:q9zmh3_helpj(display_long)|uniprotkb:jhp_0247(locus name) psi-mi:nusg_helpy(display_long)|uniprotkb:nusG(gene name)|psi-mi:nusG(display_short)|uniprotkb:HP_1203(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339765|imex:IM-22256-1280 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_010882505.1|interpro:IPR041551|ensemblbacteria:AAD05823(transcript)|ensemblbacteria:jhp_0247(gene)|uniprotkb:Q9ZMH3(identity) interpro:IPR036735|interpro:IPR001062(Transcription antitermination protein, NusG)|interpro:IPR005824(KOW)|interpro:IPR006645(Transcription antitermination protein, NusG, N-terminal)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR015869(Transcription antitermination protein, NusG, bacteria, conserved site)|refseq:NP_207994.1|interpro:IPR043425|ensemblbacteria:AAD08249(transcript)|ensemblbacteria:HP_1203(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006353"(DNA-templated transcription, termination)|go:"GO:0006354"(DNA-templated transcription, elongation)|go:"GO:0031564"(transcription antitermination)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|uniprotkb:P55976(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bBvE/oCHqYoN/0oAcM3TD1stXro85963 rogid:rXY+mR64vBudlxgO7TwMB2Y6bxM85962 intact-crc:E37A03C99A2EEAF4|rigid:c0kpJwp6RkNLl2KhG3svquY5py4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P55997 uniprotkb:P56009 intact:EBI-7695811|ensemblbacteria:AAD08489|intact:MINT-168910 intact:EBI-9265742|ensemblbacteria:AAD08594 psi-mi:rnpa_helpy(display_long)|uniprotkb:rnpA(gene name)|psi-mi:rnpA(display_short)|uniprotkb:HP_1448(locus name)|uniprotkb:Protein C5(gene name synonym) psi-mi:rs2_helpy(display_long)|uniprotkb:rpsB(gene name)|psi-mi:rpsB(display_short)|uniprotkb:HP_1554(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339783|imex:IM-22256-1281 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08489(transcript)|ensemblbacteria:HP_1448(gene)|go:"GO:0000049"(tRNA binding)|go:"GO:0001682"(tRNA 5'-leader removal)|go:"GO:0004526"(ribonuclease P activity)|go:"GO:0030677"(ribonuclease P complex)|go:"GO:0034414"(tRNA 3'-trailer cleavage, endonucleolytic)|go:"GO:0042781"(3'-tRNA processing endoribonuclease activity)|interpro:IPR000100(Bacterial ribonuclease P protein)|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|interpro:IPR020539|interpro:IPR020568|mint:P55997|refseq:NP_208239.1|refseq:WP_001112484.1|dip:DIP-3737N|uniprotkb:P55997(identity) refseq:WP_000258283.1|interpro:IPR001865(Ribosomal protein S2)|interpro:IPR005706(Ribosomal protein S2, bacterial-type)|interpro:IPR018130|interpro:IPR023591|refseq:NP_208345.1|ensemblbacteria:AAD08594(transcript)|ensemblbacteria:HP_1554(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|uniprotkb:P56009(identity) psi-mi:"MI:0469"(intact) comment:mint|function:RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KndHzqQyjfH8thowKBFaT7jmyLU85962 rogid:OzIfZb6/oK3Wdm6uNucFtY2Kn+Y85962 intact-crc:FFB9E107B1DA80E2|rigid:HSXC5ZTFF9Lj3Wz7o45IwRFD0vI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P55998 uniprotkb:O25245 intact:EBI-9272229|ensemblbacteria:AAD07148 intact:EBI-9264829|ensemblbacteria:AAD07580 psi-mi:rf1_helpy(display_long)|uniprotkb:prfA(gene name)|psi-mi:prfA(display_short)|uniprotkb:HP_0077(locus name) psi-mi:o25245_helpy(display_long)|uniprotkb:HP_0504(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339801|imex:IM-22256-1282 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000025135.1|interpro:IPR000352(Class I peptide chain release factor)|interpro:IPR004373(Peptide chain release factor 1)|interpro:IPR005139(PCRF)|refseq:NP_206877.1|ensemblbacteria:AAD07148(transcript)|ensemblbacteria:HP_0077(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0016149"(translation release factor activity, codon specific)|uniprotkb:P55998(identity) ensemblbacteria:AAD07580(transcript)|ensemblbacteria:HP_0504(gene)|uniprotkb:O25245(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:sYbo0rTeSTGdT43Cx7zZxdwuN2c85962 rogid:OmW4837MeO5ViFwnKcsHURCKcgA85962 intact-crc:B7DE0FDA2BC35400|rigid:LiT0AfnUoNk8d2NXIzvFeosCM6Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56006 uniprotkb:P56006 intact:EBI-7723842|ensemblbacteria:AAD07743|intact:MINT-176385 intact:EBI-7723842|ensemblbacteria:AAD07743|intact:MINT-176385 psi-mi:scoa_helpy(display_long)|uniprotkb:scoA(gene name)|psi-mi:scoA(display_short)|uniprotkb:"Succinyl-CoA:3-oxoacid CoA-transferase"(gene name synonym)|uniprotkb:HP_0691(locus name) psi-mi:scoa_helpy(display_long)|uniprotkb:scoA(gene name)|psi-mi:scoA(display_short)|uniprotkb:"Succinyl-CoA:3-oxoacid CoA-transferase"(gene name synonym)|uniprotkb:HP_0691(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339819|imex:IM-22256-1283 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56006|ensemblbacteria:AAD07743(transcript)|ensemblbacteria:HP_0691(gene)|go:"GO:0008260"(3-oxoacid CoA-transferase activity)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|interpro:IPR004163(Coenzyme A transferase binding site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012792(3-oxoacid CoA-transferase, subunit A)|interpro:IPR037171|rcsb pdb:3RRL|refseq:WP_001045154.1|refseq:NP_207485.1|dip:DIP-3481N|uniprotkb:P56006(identity) mint:P56006|ensemblbacteria:AAD07743(transcript)|ensemblbacteria:HP_0691(gene)|go:"GO:0008260"(3-oxoacid CoA-transferase activity)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|interpro:IPR004163(Coenzyme A transferase binding site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012792(3-oxoacid CoA-transferase, subunit A)|interpro:IPR037171|rcsb pdb:3RRL|refseq:WP_001045154.1|refseq:NP_207485.1|dip:DIP-3481N|uniprotkb:P56006(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jjo2wADecCPNpkz0CeJTLvbC6YI85962 rogid:jjo2wADecCPNpkz0CeJTLvbC6YI85962 intact-crc:94098E2BAC52A895|rigid:R8dcXQFiD+6RVxfR880Fl3jq5V8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56428 uniprotkb:P56011 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 intact:EBI-7540525|intact:MINT-164265|ensemblbacteria:AAD08337 psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:rs4_helpy(display_long)|uniprotkb:rpsD(gene name)|psi-mi:rpsD(display_short)|uniprotkb:HP_1294(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339837|imex:IM-22256-1284 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) mint:P56011|refseq:WP_000135250.1|refseq:NP_208086.1|ensemblbacteria:AAD08337(transcript)|ensemblbacteria:HP_1294(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0045903"(positive regulation of translational fidelity)|interpro:IPR001912(Ribosomal protein S4)|interpro:IPR002942(RNA-binding S4)|interpro:IPR005709(Ribosomal protein S4, bacterial-type)|interpro:IPR018079|interpro:IPR022801|interpro:IPR036986|dip:DIP-3324N|uniprotkb:P56011(identity) psi-mi:"MI:0469"(intact) comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision comment:mint|function:One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit|function:With S5 and S12 plays an important role in translational accuracy figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 rogid:nJH43XAod16uIJlWTy/Mi0jAnIo85962 intact-crc:299325842169A10E|rigid:r1NwFAEAZi3TeCbp5Mc1g83JmIQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P66637 uniprotkb:P56011 intact:EBI-7698660|ensemblbacteria:AAD07153|uniprotkb:P56016|intact:MINT-4076780 intact:EBI-7540525|intact:MINT-164265|ensemblbacteria:AAD08337 psi-mi:rs9_helpy(display_long)|uniprotkb:rpsI(gene name)|psi-mi:rpsI(display_short)|uniprotkb:HP_0083(locus name) psi-mi:rs4_helpy(display_long)|uniprotkb:rpsD(gene name)|psi-mi:rpsD(display_short)|uniprotkb:HP_1294(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339855|imex:IM-22256-1285 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000754(Ribosomal protein S9)|ensemblbacteria:AAD07153(transcript)|ensemblbacteria:HP_0083(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0022627"(cytosolic small ribosomal subunit)|mint:P66637|refseq:WP_001227269.1|interpro:IPR020568|interpro:IPR014721(Ribosomal protein S5 domain 2-type fold)|refseq:NP_206883.1|interpro:IPR020574|interpro:IPR023035|uniprotkb:P66637(identity) mint:P56011|refseq:WP_000135250.1|refseq:NP_208086.1|ensemblbacteria:AAD08337(transcript)|ensemblbacteria:HP_1294(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|go:"GO:0019843"(rRNA binding)|go:"GO:0045903"(positive regulation of translational fidelity)|interpro:IPR001912(Ribosomal protein S4)|interpro:IPR002942(RNA-binding S4)|interpro:IPR005709(Ribosomal protein S4, bacterial-type)|interpro:IPR018079|interpro:IPR022801|interpro:IPR036986|dip:DIP-3324N|uniprotkb:P56011(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit|function:With S5 and S12 plays an important role in translational accuracy figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:tqc1vYVKraG2ma7JS8CQnAv2urA85962 rogid:nJH43XAod16uIJlWTy/Mi0jAnIo85962 intact-crc:0E558FC70732FF38|rigid:aNyhW2dVOWu4v9ifENlWXJP5OMU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25956 uniprotkb:P56022 intact:EBI-7521870|intact:MINT-177734|ensemblbacteria:AAD08448 intact:EBI-9272429|uniprotkb:Q9X5H2|ensemblbacteria:AAD08082 psi-mi:biob_helpy(display_long)|uniprotkb:bioB(gene name)|psi-mi:bioB(display_short)|uniprotkb:HP_1406(locus name) psi-mi:rs15_helpy(display_long)|uniprotkb:rpsO(gene name)|psi-mi:rpsO(display_short)|uniprotkb:HP_1040(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339873|imex:IM-22256-1286 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25956|refseq:WP_001155649.1|refseq:NP_208197.1|ensemblbacteria:AAD08448(transcript)|ensemblbacteria:HP_1406(gene)|go:"GO:0004076"(biotin synthase activity)|go:"GO:0005506"(iron ion binding)|go:"GO:0009102"(biotin biosynthetic process)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR002684(Biotin synthase)|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR010722(Biotin and thiamin synthesis associated)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024177|dip:DIP-3241N|uniprotkb:O25956(identity) refseq:WP_001207122.1|interpro:IPR000589(Ribosomal protein S15)|interpro:IPR005290(Ribosomal protein S15, bacterial-type)|interpro:IPR009068(S15/NS1, RNA-binding)|refseq:NP_207830.1|ensemblbacteria:AAD08082(transcript)|ensemblbacteria:HP_1040(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022627"(cytosolic small ribosomal subunit)|uniprotkb:P56022(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:NKLF5PQ098dK9Q0CbNRo3qJKyM085962 rogid:bo/+CYVlzxxH6BP9BUWZgOH/qvA85962 intact-crc:6FFEB22D9646F7B3|rigid:CP9z7YRSDQfw+MxWBw9Fi4tNQsg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25979 uniprotkb:P56023 intact:EBI-7493621|intact:MINT-185606|ensemblbacteria:AAD08478 intact:EBI-9269487|ensemblbacteria:AAD08199 psi-mi:o25979_helpy(display_long)|uniprotkb:HP_1438(locus name) psi-mi:rs16_helpy(display_long)|uniprotkb:rpsP(gene name)|psi-mi:rpsP(display_short)|uniprotkb:HP_1151(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339891|imex:IM-22256-1287 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25979|refseq:NP_208229.1|refseq:WP_000465600.1|ensemblbacteria:AAD08478(transcript)|ensemblbacteria:HP_1438(gene)|dip:DIP-3601N|uniprotkb:O25979(identity) refseq:WP_000216125.1|interpro:IPR000307(Ribosomal protein S16)|interpro:IPR020592|interpro:IPR023803|refseq:NP_207942.1|ensemblbacteria:AAD08199(transcript)|ensemblbacteria:HP_1151(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|uniprotkb:P56023(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/nINAkWhX6nA/SJqORWdXEuGaFY85962 rogid:4ImMTFlzi1XOCiHcleq79EByZXw85962 intact-crc:616260590F5A1F04|rigid:a3yjjvtLbGeoBYSXqvPDxznqdDM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56023 uniprotkb:Q9ZKN9 intact:EBI-9269487|ensemblbacteria:AAD08199 intact:EBI-9272494|ensemblbacteria:AAD06474 psi-mi:rs16_helpy(display_long)|uniprotkb:rpsP(gene name)|psi-mi:rpsP(display_short)|uniprotkb:HP_1151(locus name) psi-mi:q9zkn9_helpj(display_long)|uniprotkb:jhp_0896(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339909|imex:IM-22256-1288 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000216125.1|interpro:IPR000307(Ribosomal protein S16)|interpro:IPR020592|interpro:IPR023803|refseq:NP_207942.1|ensemblbacteria:AAD08199(transcript)|ensemblbacteria:HP_1151(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015935"(small ribosomal subunit)|uniprotkb:P56023(identity) ensemblbacteria:AAD06474(transcript)|ensemblbacteria:jhp_0896(gene)|uniprotkb:Q9ZKN9(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4ImMTFlzi1XOCiHcleq79EByZXw85962 rogid:wZWkUz1EqGakwJNkpztuvtP/0LU85963 intact-crc:0C8A99A64FABF172|rigid:6ijRJI5/f2d+944ohZmX1oy7dAc false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56428 uniprotkb:P56028 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 intact:EBI-9272512|ensemblbacteria:AAD07628 psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:rs21_helpy(display_long)|uniprotkb:rpsU(gene name)|psi-mi:rpsU(display_short)|uniprotkb:HP_0562(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339927|imex:IM-22256-1289 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) refseq:WP_001117778.1|interpro:IPR001911(Ribosomal protein S21)|interpro:IPR018278|refseq:NP_207357.1|interpro:IPR038380|ensemblbacteria:AAD07628(transcript)|ensemblbacteria:HP_0562(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|uniprotkb:P56028(identity) psi-mi:"MI:0469"(intact) comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 rogid:2hlfof4JeCp1O58UYx1l+bRPRMo85962 intact-crc:ADD512FA568EDF79|rigid:dD/Iq7cIu7iNjOWQ6MShQIsB8z4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56032 uniprotkb:O06914 intact:EBI-7495042|intact:MINT-172477|ensemblbacteria:AAD08357 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:rl4_helpy(display_long)|uniprotkb:rplD(gene name)|psi-mi:rplD(display_short)|uniprotkb:HP_1318(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339945|imex:IM-22256-1290 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56032|refseq:NP_208110.1|refseq:WP_000030195.1|ensemblbacteria:AAD08357(transcript)|ensemblbacteria:HP_1318(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|interpro:IPR002136(Ribosomal protein L4/L1e)|interpro:IPR013005(Ribosomal protein L4/L1e, bacterial-type)|interpro:IPR023574|dip:DIP-3117N|uniprotkb:P56032(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) function:One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome|comment:mint|function:Forms part of the polypeptide exit tunnel - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/BMy63bzWPPPcvsn7hngyjiUcKU85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:096B9F6B984554F0|rigid:1ht+eENiysefQlpHNwoMbb8XBCQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56032 uniprotkb:O34995 intact:EBI-7495042|intact:MINT-172477|ensemblbacteria:AAD08357 intact:EBI-9262208|ensemblbacteria:AAD07492|ensemblbacteria:AAD08454 psi-mi:rl4_helpy(display_long)|uniprotkb:rplD(gene name)|psi-mi:rplD(display_short)|uniprotkb:HP_1318(locus name) psi-mi:o34995_helpy(display_long)|uniprotkb:HP_0423(locus name)|uniprotkb:HP_1412(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339963|imex:IM-22256-1291 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56032|refseq:NP_208110.1|refseq:WP_000030195.1|ensemblbacteria:AAD08357(transcript)|ensemblbacteria:HP_1318(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|interpro:IPR002136(Ribosomal protein L4/L1e)|interpro:IPR013005(Ribosomal protein L4/L1e, bacterial-type)|interpro:IPR023574|dip:DIP-3117N|uniprotkb:P56032(identity) refseq:WP_000506796.1|refseq:NP_207221.1|refseq:NP_208203.1|ensemblbacteria:AAD07492(transcript)|ensemblbacteria:AAD08454(transcript)|ensemblbacteria:HP_0423(gene)|ensemblbacteria:HP_1412(gene)|uniprotkb:O34995(identity) psi-mi:"MI:0469"(intact) function:One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome|comment:mint|function:Forms part of the polypeptide exit tunnel - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/BMy63bzWPPPcvsn7hngyjiUcKU85962 rogid:XBT9iVMJFHjoDmdTERIkQZ4N9Lk85962 intact-crc:B6B7960C6459DD6D|rigid:85fSSHo/ZExXlTLLzeK6O+j3Cdg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25253 uniprotkb:P56036 intact:EBI-7662907|ensemblbacteria:AAD07583|intact:MINT-161682 intact:EBI-7694828|ensemblbacteria:AAD08246|intact:MINT-164442 psi-mi:hslv_helpy(display_long)|uniprotkb:hslV(gene name)|psi-mi:hslV(display_short)|uniprotkb:HP_0515(locus name) psi-mi:rl10_helpy(display_long)|uniprotkb:rplJ(gene name)|psi-mi:rplJ(display_short)|uniprotkb:HP_1200(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339981|imex:IM-22256-1292 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07583(transcript)|ensemblbacteria:HP_0515(gene)|go:"GO:0004298"(threonine-type endopeptidase activity)|go:"GO:0005839"(proteasome core complex)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051603"(proteolysis involved in cellular protein catabolic process)|interpro:IPR001353(20S proteasome, A and B subunits)|interpro:IPR022281|interpro:IPR023333|interpro:IPR029055|mint:O25253|refseq:WP_000461024.1|refseq:NP_207312.1|dip:DIP-3441N|uniprotkb:O25253(identity) ensemblbacteria:AAD08246(transcript)|ensemblbacteria:HP_1200(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|interpro:IPR001790(Ribosomal protein L10)|interpro:IPR002363(Ribosomal protein L10, eubacterial, conserved site)|interpro:IPR022973|interpro:IPR043141|mint:P56036|refseq:NP_207991.1|refseq:WP_001171739.1|dip:DIP-3052N|uniprotkb:P56036(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Protease subunit of a proteasome-like degradation complex comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:SoK3y6MMga+pPNH7yX6IQf5nmEY85962 rogid:0JHObOKNcQcY2J9nyslwuHd37kA85962 intact-crc:C69133733AED273B|rigid:9Z15K1gtT2olXDZvfQlg4oLxu/A false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P55834 uniprotkb:P56036 intact:EBI-7696366|ensemblbacteria:AAD08245|intact:MINT-185711 intact:EBI-7694828|ensemblbacteria:AAD08246|intact:MINT-164442 psi-mi:rl7_helpy(display_long)|uniprotkb:HP_1199(locus name)|uniprotkb:rplL(gene name)|psi-mi:rplL(display_short) psi-mi:rl10_helpy(display_long)|uniprotkb:rplJ(gene name)|psi-mi:rplJ(display_short)|uniprotkb:HP_1200(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9339999|imex:IM-22256-1293 author score:A and B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08245(transcript)|ensemblbacteria:HP_1199(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|interpro:IPR000206(Ribosomal protein L7/L12)|interpro:IPR008932(Ribosomal protein L7/L12, oligomerisation)|interpro:IPR013823(Ribosomal protein L7/L12, C-terminal)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR036235|mint:P55834|refseq:NP_207990.1|refseq:WP_001018245.1|dip:DIP-3668N|uniprotkb:P55834(identity) ensemblbacteria:AAD08246(transcript)|ensemblbacteria:HP_1200(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0015934"(large ribosomal subunit)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|interpro:IPR001790(Ribosomal protein L10)|interpro:IPR002363(Ribosomal protein L10, eubacterial, conserved site)|interpro:IPR022973|interpro:IPR043141|mint:P56036|refseq:NP_207991.1|refseq:WP_001171739.1|dip:DIP-3052N|uniprotkb:P56036(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation comment:mint figure legend:Table S1|comment:"This interaction was detected using both 2-micron high-copy (confidence group B) and CEN low-copy (confidence group A) ori plasmid systems."|author-confidence:A and B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:QMsXDZxaNrKxgGuZGkLrKdz1lkk85962 rogid:0JHObOKNcQcY2J9nyslwuHd37kA85962 intact-crc:BA63F109D2D905A3|rigid:30qmqUfiDRzHykXRZ+tLPwRtV0Y false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56039 uniprotkb:Q48271 intact:EBI-7497678|intact:MINT-165123|ensemblbacteria:AAD08349 intact:EBI-7497456|intact:MINT-161359|uniprotkb:Q48257|uniprotkb:O07682|ensemblbacteria:AAD08120 psi-mi:rl14_helpy(display_long)|uniprotkb:rplN(gene name)|psi-mi:rplN(display_short)|uniprotkb:HP_1309(locus name) psi-mi:copp_helpy(display_long)|uniprotkb:copP(gene name)|psi-mi:copP(display_short)|uniprotkb:HP_1073(locus name)|uniprotkb:Copper ion-binding protein(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340017|imex:IM-22256-1294 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56039|refseq:NP_208101.1|ensemblbacteria:AAD08349(transcript)|ensemblbacteria:HP_1309(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|interpro:IPR000218(Ribosomal protein L14b/L23e)|interpro:IPR019972|interpro:IPR036853|interpro:IPR005745(Ribosomal protein L14, bacterial-type)|refseq:WP_000616110.1|dip:DIP-3640N|uniprotkb:P56039(identity) mint:Q48271|refseq:NP_207864.1|ensemblbacteria:AAD08120(transcript)|ensemblbacteria:HP_1073(gene)|go:"GO:0005507"(copper ion binding)|go:"GO:0006825"(copper ion transport)|interpro:IPR000428(Copper ion binding protein)|interpro:IPR006121(Heavy metal transport/detoxification protein)|interpro:IPR006122(Copper ion-binding)|interpro:IPR017969|interpro:IPR036163|rcsb pdb:1YG0|refseq:WP_000648265.1|dip:DIP-3638N|uniprotkb:Q48271(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome comment:mint|function:Part of a cation-transporting system which is associated with copper export out of the H.pylori cells figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:hQmg9nT7e7vTM2q1l+OYz0r/3+g85962 rogid:Nhbz6KfJ5t9scKhW8qZpQgimna085962 intact-crc:0F6342E0701CA297|rigid:nMekg5R3jzNXUQhaOUCxrkw5lcE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9ZKN9 uniprotkb:P56052 intact:EBI-9272494|ensemblbacteria:AAD06474 intact:EBI-9272681|ensemblbacteria:AAD08362 psi-mi:q9zkn9_helpj(display_long)|uniprotkb:jhp_0896(locus name) psi-mi:rl29_helpy(display_long)|uniprotkb:rpmC(gene name)|psi-mi:rpmC(display_short)|uniprotkb:HP_1311(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340035|imex:IM-22256-1295 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06474(transcript)|ensemblbacteria:jhp_0896(gene)|uniprotkb:Q9ZKN9(identity) refseq:WP_000877884.1|interpro:IPR036049|interpro:IPR001854(Ribosomal protein L29)|interpro:IPR018254|refseq:NP_208103.1|ensemblbacteria:AAD08362(transcript)|ensemblbacteria:HP_1311(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|uniprotkb:P56052(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wZWkUz1EqGakwJNkpztuvtP/0LU85963 rogid:BVAfm0n4f2svjmVp1iruqAmwjIY85962 intact-crc:E2C629A3B00BF48D|rigid:SghVLP2sCbpp47O/ZtqbLKAHhVQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56064 uniprotkb:O25664 intact:EBI-7534801|intact:MINT-181460|ensemblbacteria:AAD07082 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:dnag_helpy(display_long)|uniprotkb:HP_0012(locus name)|uniprotkb:dnaG(gene name)|psi-mi:dnaG(display_short) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340053|imex:IM-22256-1296 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56064|refseq:WP_000601638.1|refseq:NP_206814.1|ensemblbacteria:AAD07082(transcript)|ensemblbacteria:HP_0012(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003896"(DNA primase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006269"(DNA replication, synthesis of RNA primer)|go:"GO:0008270"(zinc ion binding)|go:"GO:1990077"(primosome complex)|interpro:IPR002694(Zinc finger, CHC2-type)|interpro:IPR006171(TOPRIM)|interpro:IPR006295(DNA primase, DnaG)|interpro:IPR013264(DNA primase, catalytic core, N-terminal)|interpro:IPR016136(DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal)|interpro:IPR030846|interpro:IPR031988|interpro:IPR034151|interpro:IPR036977|interpro:IPR037068|rcsb pdb:4EHS|dip:DIP-3301N|uniprotkb:P56064(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint|function:DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:rus680XMSt4GBMTNYUwA7EW97uA85962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:E0C2F9FF796E47C8|rigid:2lmCRp+88pJBHyz7dC7ltOt0ok8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O34754 uniprotkb:P56064 intact:EBI-7707586|ensemblbacteria:AAD07500|ensemblbacteria:AAD08030|ensemblbacteria:AAD08044|ensemblbacteria:AAD08140|ensemblbacteria:AAD08573|intact:MINT-182410 intact:EBI-7534801|intact:MINT-181460|ensemblbacteria:AAD07082 psi-mi:o34754_helpy(display_long)|uniprotkb:HP_0437(locus name)|uniprotkb:HP_0988(locus name)|uniprotkb:HP_0998(locus name)|uniprotkb:HP_1096(locus name)|uniprotkb:HP_1535(locus name) psi-mi:dnag_helpy(display_long)|uniprotkb:HP_0012(locus name)|uniprotkb:dnaG(gene name)|psi-mi:dnaG(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340071|imex:IM-22256-1297 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07500(transcript)|ensemblbacteria:AAD08030(transcript)|ensemblbacteria:AAD08044(transcript)|ensemblbacteria:AAD08140(transcript)|ensemblbacteria:AAD08573(transcript)|ensemblbacteria:HP_0437(gene)|ensemblbacteria:HP_0988(gene)|ensemblbacteria:HP_0998(gene)|ensemblbacteria:HP_1096(gene)|ensemblbacteria:HP_1535(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0004803"(transposase activity)|go:"GO:0006313"(transposition, DNA-mediated)|interpro:IPR002686(Transposase IS200-like)|interpro:IPR036515|refseq:WP_010875484.1|refseq:NP_207235.1|refseq:NP_208326.1|refseq:NP_207779.1|refseq:NP_207789.1|refseq:NP_207887.1|dip:DIP-3149N|mint:O34754|uniprotkb:O34754(identity) mint:P56064|refseq:WP_000601638.1|refseq:NP_206814.1|ensemblbacteria:AAD07082(transcript)|ensemblbacteria:HP_0012(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003896"(DNA primase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006269"(DNA replication, synthesis of RNA primer)|go:"GO:0008270"(zinc ion binding)|go:"GO:1990077"(primosome complex)|interpro:IPR002694(Zinc finger, CHC2-type)|interpro:IPR006171(TOPRIM)|interpro:IPR006295(DNA primase, DnaG)|interpro:IPR013264(DNA primase, catalytic core, N-terminal)|interpro:IPR016136(DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal)|interpro:IPR030846|interpro:IPR031988|interpro:IPR034151|interpro:IPR036977|interpro:IPR037068|rcsb pdb:4EHS|dip:DIP-3301N|uniprotkb:P56064(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GvtKGezD4xNPj0ueLbUl05qYJxk85962 rogid:rus680XMSt4GBMTNYUwA7EW97uA85962 intact-crc:0FD4D735817F9880|rigid:h4x6ig26ZePhmRztaIirdSlJwR4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56066 uniprotkb:O25852 intact:EBI-7515733|intact:MINT-183175|ensemblbacteria:AAD07101 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 psi-mi:clps_helpy(display_long)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:HP_0032(locus name) psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340089|imex:IM-22256-1298 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56066|refseq:WP_000784920.1|refseq:NP_206834.1|ensemblbacteria:AAD07101(transcript)|ensemblbacteria:HP_0032(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051087"(chaperone binding)|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|dip:DIP-3107N|uniprotkb:P56066(identity) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Involved in the modulation of the specificity of the clpAP-mediated ATP-dependent protein degradation comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:24XzmUMqcQd9MuwsrPr67hcPl5s85962 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 intact-crc:E3A759A76245078F|rigid:NwA9WbveCCBCZYq7IEVSiNrrff8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56120 uniprotkb:P56069 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9272843|ensemblbacteria:AAD07176 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:metb_helpy(display_long)|uniprotkb:metB(gene name)|psi-mi:metB(display_short)|uniprotkb:"O-succinylhomoserine (thiol)-lyase"(gene name synonym)|uniprotkb:HP_0106(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340107|imex:IM-22256-1299 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) refseq:WP_001242837.1|interpro:IPR000277(Cys/Met metabolism, pyridoxal phosphate-dependent enzyme)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|rcsb pdb:4L0O|refseq:NP_206906.1|ensemblbacteria:AAD07176(transcript)|ensemblbacteria:HP_0106(gene)|go:"GO:0003962"(cystathionine gamma-synthase activity)|go:"GO:0004123"(cystathionine gamma-lyase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0009086"(methionine biosynthetic process)|go:"GO:0016846"(carbon-sulfur lyase activity)|go:"GO:0019343"(cysteine biosynthetic process via cystathionine)|go:"GO:0019346"(transsulfuration)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0102028"("cystathionine gamma-synthase activity (acts on O-phosphohomoserine)")|uniprotkb:P56069(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:1Y0H5Tgl2B+gdUNhJQkRMLqEypY85962 intact-crc:94547C8D31E88F7A|rigid:DMMkpZmRzteB+a93W2kQp+JZMQA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25018 uniprotkb:P56074 intact:EBI-7532610|intact:MINT-172836|ensemblbacteria:AAD07300 intact:EBI-9272877|ensemblbacteria:AAD07232 psi-mi:y232_helpy(display_long)|uniprotkb:HP_0232(locus name) psi-mi:hem2_helpy(display_long)|uniprotkb:hemB(gene name)|psi-mi:hemB(display_short)|uniprotkb:Porphobilinogen synthase(gene name synonym)|uniprotkb:HP_0163(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340125|imex:IM-22256-1300 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25018|refseq:NP_207030.1|ensemblbacteria:AAD07300(transcript)|go:"GO:0005886"(plasma membrane)|interpro:IPR020913|ensemblbacteria:HP_0232(gene)|refseq:WP_000743516.1|dip:DIP-3157N|uniprotkb:O25018(identity) interpro:IPR030656|refseq:WP_000476591.1|interpro:IPR001731(Tetrapyrrole biosynthesis, porphobilinogen synthase)|interpro:IPR013785(Aldolase-type TIM barrel)|refseq:NP_206962.1|ensemblbacteria:AAD07232(transcript)|ensemblbacteria:HP_0163(gene)|go:"GO:0004655"(porphobilinogen synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0008270"(zinc ion binding)|uniprotkb:P56074(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:buwMDio43stJ3bXNmrlD8aHiC4Y85962 rogid:eGf1WflkA2UUIVbqUEfW2xUPnMM85962 intact-crc:DD9D7EE49D6E52B0|rigid:Jo+gB+bjVX6qz1myrgNARxzqBmI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56082 uniprotkb:P56084 intact:EBI-7496539|intact:MINT-159836|ensemblbacteria:AAD08175 intact:EBI-9272998|ensemblbacteria:AAD08173 psi-mi:atpg_helpy(display_long)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short)|uniprotkb:HP_1133(locus name)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:F-ATPase gamma subunit(gene name synonym) psi-mi:atpe_helpy(display_long)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:F-ATPase epsilon subunit(gene name synonym)|uniprotkb:HP_1131(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340143|imex:IM-22256-1301 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56082|refseq:NP_207924.1|interpro:IPR035968|ensemblbacteria:AAD08175(transcript)|ensemblbacteria:HP_1133(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR000131(ATPase, F1 complex, gamma subunit)|refseq:WP_000002194.1|dip:DIP-3116N|uniprotkb:P56082(identity) interpro:IPR036771|refseq:WP_001863093.1|refseq:NP_207922.1|interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|ensemblbacteria:AAD08173(transcript)|ensemblbacteria:HP_1131(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:P56084(identity) psi-mi:"MI:0469"(intact) function:"Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex"|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gR8pc+z5yGmMlO9qI7b+Dv6OLVc85962 rogid:rec9cmE1p+ozEViEiOECsaRZam885962 intact-crc:4D252E8C588A43DC|rigid:smulW6U5r8R1ulwsEhwLgPuZEYE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56115 uniprotkb:O25265 intact:EBI-7509149|intact:MINT-175701|ensemblbacteria:AAD07374 intact:EBI-9260592|ensemblbacteria:AAD07597 psi-mi:gsa_helpy(display_long)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short)|uniprotkb:HP_0306(locus name)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym) psi-mi:o25265_helpy(display_long)|uniprotkb:HP_0530(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340161|imex:IM-22256-1302 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56115|refseq:NP_207104.1|refseq:WP_000421462.1|ensemblbacteria:AAD07374(transcript)|ensemblbacteria:HP_0306(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006779"(porphyrin-containing compound biosynthetic process)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|dip:DIP-3347N|uniprotkb:P56115(identity) refseq:WP_000900785.1|interpro:IPR007430(VirB8)|refseq:NP_207326.1|interpro:IPR032710|rcsb pdb:6IQT|ensemblbacteria:AAD07597(transcript)|ensemblbacteria:HP_0530(gene)|go:"GO:0016021"(integral component of membrane)|uniprotkb:O25265(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r0cFTDs8W8Om/6WGEannWSPY+xA85962 rogid:JYIRx5ada132gRicpUXB6kkY/jg85962 intact-crc:2FEA477475B54D90|rigid:Dc6qdL3wp6fN456y3j2U0fal2Nk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56115 uniprotkb:Q9ZKK8 intact:EBI-7509149|intact:MINT-175701|ensemblbacteria:AAD07374 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:gsa_helpy(display_long)|uniprotkb:hemL(gene name)|psi-mi:hemL(display_short)|uniprotkb:HP_0306(locus name)|uniprotkb:Glutamate-1-semialdehyde aminotransferase(gene name synonym) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340179|imex:IM-22256-1303 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56115|refseq:NP_207104.1|refseq:WP_000421462.1|ensemblbacteria:AAD07374(transcript)|ensemblbacteria:HP_0306(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0006779"(porphyrin-containing compound biosynthetic process)|go:"GO:0006782"(protoporphyrinogen IX biosynthetic process)|go:"GO:0008483"(transaminase activity)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042286"(glutamate-1-semialdehyde 2,1-aminomutase activity)|interpro:IPR004639(Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase)|interpro:IPR005814(Aminotransferase class-III)|interpro:IPR015421(Pyridoxal phosphate-dependent transferase, major region, subdomain 1)|interpro:IPR015422(Pyridoxal phosphate-dependent transferase, major region, subdomain 2)|interpro:IPR015424(Pyridoxal phosphate-dependent transferase, major region)|dip:DIP-3347N|uniprotkb:P56115(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:r0cFTDs8W8Om/6WGEannWSPY+xA85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:C2C13A6928B006D7|rigid:0BdnNTNLOH2DUKt61LbEqCsXu/o false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56122 uniprotkb:O25311 intact:EBI-7500271|intact:MINT-176132|ensemblbacteria:AAD07726 intact:EBI-7502370|intact:MINT-171790|ensemblbacteria:AAD07654 psi-mi:aroc_helpy(display_long)|uniprotkb:aroC(gene name)|psi-mi:aroC(display_short)|uniprotkb:5-enolpyruvylshikimate-3-phosphate phospholyase(gene name synonym) psi-mi:o25311_helpy(display_long)|uniprotkb:HP_0589(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340197|imex:IM-22256-1304 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56122|refseq:WP_001094036.1|interpro:IPR020541|refseq:NP_207457.1|interpro:IPR000453(Chorismate synthase)|ensemblbacteria:AAD07726(transcript)|ensemblbacteria:HP_0663(gene)|go:"GO:0004107"(chorismate synthase activity)|go:"GO:0005829"(cytosol)|go:"GO:0008652"(cellular amino acid biosynthetic process)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0009423"(chorismate biosynthetic process)|go:"GO:0010181"(FMN binding)|rcsb pdb:1UM0|rcsb pdb:1UMF|interpro:IPR035904|uniprotkb:P56122(identity) mint:O25311|refseq:WP_001206856.1|refseq:NP_207384.1|ensemblbacteria:AAD07654(transcript)|ensemblbacteria:HP_0589(gene)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0016491"(oxidoreductase activity)|interpro:IPR002880(Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal)|interpro:IPR009014(Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)|interpro:IPR029061|interpro:IPR033412|dip:DIP-3462N|uniprotkb:O25311(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ALKO1omI2Rxmk057Rl7wyKvMlc85962 rogid:ufjsDo/hoVKQAOM5bCZAjmWDOtQ85962 intact-crc:62E0C5F49DD35A16|rigid:i2X4CjeuS4G8WNKT/7xMftpLcfU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56123 uniprotkb:O25423 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9260274|ensemblbacteria:AAD07777 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:o25423_helpy(display_long)|uniprotkb:HP_0721(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340215|imex:IM-22256-1305 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) interpro:IPR038310|interpro:IPR009488(Protein of unknown function DUF1104)|rcsb pdb:2XRH|refseq:NP_207515.1|refseq:WP_000709617.1|ensemblbacteria:AAD07777(transcript)|ensemblbacteria:HP_0721(gene)|uniprotkb:O25423(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:KBGl3pNTghpubVUKKjdL3UpSXTA85962 intact-crc:8B8F09B07C6292D9|rigid:AkIZYS9CwbWA1sWj9W5E+ylP1xI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56123 uniprotkb:O25610 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9263045|ensemblbacteria:AAD07999 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:y956_helpy(display_long)|uniprotkb:RNA pseudouridylate synthase(gene name synonym)|uniprotkb:RNA-uridine isomerase(gene name synonym)|uniprotkb:HP_0956(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340233|imex:IM-22256-1306 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) refseq:WP_000409617.1|interpro:IPR006145(Pseudouridine synthase)|interpro:IPR006224(Pseudouridine synthase, conserved site)|interpro:IPR020103|refseq:NP_207748.1|ensemblbacteria:AAD07999(transcript)|ensemblbacteria:HP_0956(gene)|go:"GO:0000455"(enzyme-directed rRNA pseudouridine synthesis)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|uniprotkb:O25610(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:I9CDLgzCdYoEonESpJtaMgKOzLs85962 intact-crc:0B7A3B6B128129B7|rigid:w+amu5xX3UHaQpHW7h7H02X4swk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56123 uniprotkb:O25646 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-7570023|intact:MINT-171333|ensemblbacteria:AAD08045 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:o25646_helpy(display_long)|uniprotkb:HP_1000(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340251|imex:IM-22256-1307 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) refseq:WP_000587397.1|mint:O25646|refseq:NP_207791.1|ensemblbacteria:AAD08045(transcript)|ensemblbacteria:HP_1000(gene)|interpro:IPR009744(VirC1)|interpro:IPR027417|dip:DIP-3618N|uniprotkb:O25646(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:64wmsMWs+zFpo5ignH0wlMJA7z885962 intact-crc:62590C8093C6C236|rigid:itP1lhaFBvRzKgWG/pNfhYsmumo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56123 uniprotkb:O25664 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9261767|ensemblbacteria:AAD08064 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:ispdf_helpy(display_long)|uniprotkb:ispDF(gene name)|psi-mi:ispDF(display_short)|uniprotkb:HP_1020(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340269|imex:IM-22256-1308 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) refseq:WP_000052931.1|interpro:IPR001228(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR018294|interpro:IPR020555|interpro:IPR026596|refseq:NP_207810.1|interpro:IPR029044|interpro:IPR034683|interpro:IPR036571|ensemblbacteria:AAD08064(transcript)|ensemblbacteria:HP_1020(gene)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0046872"(metal ion binding)|go:"GO:0050518"(2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)|uniprotkb:O25664(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:jQaR4ZgXVTHqqS7UiBORUw1gOxM85962 intact-crc:8389C79A226DD887|rigid:2ETQI0HFQe4MkarDH7xfWY7goD8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56123 uniprotkb:O25676 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-527933|ensemblbacteria:AAD08076 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:o25676_helpy(display_long)|uniprotkb:HP_1032(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340287|imex:IM-22256-1309 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) refseq:NP_207822.1|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016987"(sigma factor activity)|interpro:IPR000943(RNA polymerase sigma-70 factor)|interpro:IPR007627(RNA polymerase sigma-70 region 2)|interpro:IPR007630(RNA polymerase sigma-70 region 4)|interpro:IPR012845(RNA polymerase sigma factor, FliA/WhiG)|interpro:IPR013324(RNA polymerase sigma factor, regions 3 and 4)|interpro:IPR013325(RNA polymerase sigma factor, region 2)|interpro:IPR014284(RNA polymerase sigma-70)|ensemblbacteria:AAD08076(transcript)|ensemblbacteria:HP_1032(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003743"(translation initiation factor activity)|refseq:WP_000602430.1|dip:DIP-3621N|mint:O25676|uniprotkb:O25676(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:Jmr6bQGWHsh4eX06yLlaN6KDBrs85962 intact-crc:990B6644C07C0665|rigid:R0vlgCVtSgY6yoGNEbuFzNfqdZQ false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56123 uniprotkb:O25756 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9261023|ensemblbacteria:AAD08177 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:o25756_helpy(display_long)|uniprotkb:ATP synthase subunit delta(gene name synonym)|uniprotkb:F-type ATPase subunit delta(gene name synonym)|uniprotkb:HP_1135(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340305|imex:IM-22256-1310 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) refseq:WP_001153275.1|interpro:IPR000711(ATPase, F1 complex, OSCP/delta subunit)|interpro:IPR026015|refseq:NP_207926.1|ensemblbacteria:AAD08177(transcript)|ensemblbacteria:HP_1135(gene)|go:"GO:0016020"(membrane)|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|uniprotkb:O25756(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:yVfhqClfP3h/xPgc60jEMnHcfN885962 intact-crc:1871E4E51E9E17BB|rigid:3weLQSOo3exiTW+gk9QR8IW8SwM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56123 uniprotkb:Q9ZLB0 intact:EBI-7526192|intact:MINT-159708|ensemblbacteria:AAD08293 intact:EBI-9273417|ensemblbacteria:AAD06254 psi-mi:rnr_helpy(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:HP_1248(locus name)|uniprotkb:VacB protein homolog(gene name synonym) psi-mi:q9zlb0_helpj(display_long)|uniprotkb:jhp_0670(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340323|imex:IM-22256-1311 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56123|refseq:WP_001161318.1|refseq:NP_208040.1|ensemblbacteria:AAD08293(transcript)|ensemblbacteria:HP_1248(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008859"(exoribonuclease II activity)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|dip:DIP-3252N|uniprotkb:P56123(identity) interpro:IPR006073(GTP1/OBG)|interpro:IPR027417|ensemblbacteria:AAD06254(transcript)|ensemblbacteria:jhp_0670(gene)|go:"GO:0005525"(GTP binding)|uniprotkb:Q9ZLB0(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:GzUcSOK6ZzvBE1xWDv+o+TmEhU085962 rogid:xAcLsS1WaAp06hD0gRlIbeSfPV085963 intact-crc:AD0A362ACED89175|rigid:rAJMD5GypBQSvvzoLxggC85zvFs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25852 uniprotkb:P56133 intact:EBI-7731253|ensemblbacteria:AAD08308|intact:MINT-179019 intact:EBI-9273499|ensemblbacteria:AAD07431 psi-mi:o25852_helpy(display_long)|uniprotkb:HP_1262(locus name) psi-mi:pimt_helpy(display_long)|uniprotkb:pcm(gene name)|psi-mi:pcm(display_short)|uniprotkb:L-isoaspartyl protein carboxyl methyltransferase(gene name synonym)|uniprotkb:Protein L-isoaspartyl methyltransferase(gene name synonym)|uniprotkb:Protein-beta-aspartate methyltransferase(gene name synonym)|uniprotkb:HP_0363(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340341|imex:IM-22256-1312 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25852|ensemblbacteria:AAD08308(transcript)|ensemblbacteria:HP_1262(gene)|go:"GO:0008137"("NADH dehydrogenase (ubiquinone) activity")|go:"GO:0048038"(quinone binding)|interpro:IPR001268("NADH dehydrogenase (ubiquinone), 30 kDa subunit")|interpro:IPR010218("NADH (or F420H2) dehydrogenase, subunit C")|interpro:IPR020396|interpro:IPR037232|refseq:WP_000989706.1|refseq:NP_208054.1|dip:DIP-3413N|uniprotkb:O25852(identity) refseq:WP_001084597.1|interpro:IPR000682("Protein-L-isoaspartate(D-aspartate) O-methyltransferase")|refseq:NP_207161.1|interpro:IPR029063|ensemblbacteria:AAD07431(transcript)|ensemblbacteria:HP_0363(gene)|go:"GO:0004719"("protein-L-isoaspartate (D-aspartate) O-methyltransferase activity")|go:"GO:0005737"(cytoplasm)|go:"GO:0030091"(protein repair)|uniprotkb:P56133(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:U1ArJBLYB7vmtWTeFwbW3s4aiMk85962 rogid:/fA64bi2sf/jLeJXZYXtShhLoQ485962 intact-crc:4FA631557CD99945|rigid:uRaeY4EBy5FF04v8PFKlDqQXVME false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56144 uniprotkb:O06914 intact:EBI-9273537|ensemblbacteria:AAD07429 intact:EBI-9261354|ensemblbacteria:AAD07258 psi-mi:trua_helpy(display_long)|uniprotkb:truA(gene name)|psi-mi:truA(display_short)|uniprotkb:hisT(gene name synonym)|uniprotkb:"tRNA pseudouridine(38-40) synthase"(gene name synonym)|uniprotkb:tRNA pseudouridylate synthase I(gene name synonym)|uniprotkb:tRNA-uridine isomerase I(gene name synonym)|uniprotkb:HP_0361(locus name) psi-mi:frdb_helpy(display_long)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:HP_0191(locus name)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340359|imex:IM-22256-1313 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001203260.1|interpro:IPR020094|interpro:IPR001406(tRNA pseudouridine synthase)|interpro:IPR020095|interpro:IPR020097|interpro:IPR020103|refseq:NP_207159.1|ensemblbacteria:AAD07429(transcript)|ensemblbacteria:HP_0361(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|go:"GO:0031119"(tRNA pseudouridine synthesis)|go:"GO:0106029"(tRNA pseudouridine synthase activity)|uniprotkb:P56144(identity) refseq:WP_001282439.1|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|refseq:NP_206990.1|interpro:IPR036010|ensemblbacteria:AAD07258(transcript)|ensemblbacteria:HP_0191(gene)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0102040"("fumarate reductase (menaquinone)")|uniprotkb:O06914(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zYY51Tza1ue5sY41BLJ6EV2hiZM85962 rogid:UDu8k+3dtN0kzzlwRwY4IvyDCQE85962 intact-crc:21B8A93CA45D9652|rigid:ZfS0vytnJlKS7GwZ/Q+swSS3/+4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25553 uniprotkb:P56144 intact:EBI-7591462|intact:MINT-184156|ensemblbacteria:AAD07948 intact:EBI-9273537|ensemblbacteria:AAD07429 psi-mi:o25553_helpy(display_long)|uniprotkb:HP_0893(locus name) psi-mi:trua_helpy(display_long)|uniprotkb:truA(gene name)|psi-mi:truA(display_short)|uniprotkb:hisT(gene name synonym)|uniprotkb:"tRNA pseudouridine(38-40) synthase"(gene name synonym)|uniprotkb:tRNA pseudouridylate synthase I(gene name synonym)|uniprotkb:tRNA-uridine isomerase I(gene name synonym)|uniprotkb:HP_0361(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340377|imex:IM-22256-1314 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001134157.1|mint:O25553|refseq:NP_207686.1|ensemblbacteria:AAD07948(transcript)|ensemblbacteria:HP_0893(gene)|dip:DIP-3575N|uniprotkb:O25553(identity) refseq:WP_001203260.1|interpro:IPR020094|interpro:IPR001406(tRNA pseudouridine synthase)|interpro:IPR020095|interpro:IPR020097|interpro:IPR020103|refseq:NP_207159.1|ensemblbacteria:AAD07429(transcript)|ensemblbacteria:HP_0361(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|go:"GO:0031119"(tRNA pseudouridine synthesis)|go:"GO:0106029"(tRNA pseudouridine synthase activity)|uniprotkb:P56144(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2IZH1OttKOtRfVjc8uidMoItTgM85962 rogid:zYY51Tza1ue5sY41BLJ6EV2hiZM85962 intact-crc:0BF7406E9A09CFBD|rigid:mIa9mcCYBULMqlaWcsgJ7fqKXAE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25828 uniprotkb:P56144 intact:EBI-527984|ensemblbacteria:AAD08280 intact:EBI-9273537|ensemblbacteria:AAD07429 psi-mi:o25828_helpy(display_long)|uniprotkb:HP_1230(locus name) psi-mi:trua_helpy(display_long)|uniprotkb:truA(gene name)|psi-mi:truA(display_short)|uniprotkb:hisT(gene name synonym)|uniprotkb:"tRNA pseudouridine(38-40) synthase"(gene name synonym)|uniprotkb:tRNA pseudouridylate synthase I(gene name synonym)|uniprotkb:tRNA-uridine isomerase I(gene name synonym)|uniprotkb:HP_0361(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340395|imex:IM-22256-1315 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_208022.1|ensemblbacteria:AAD08280(transcript)|ensemblbacteria:HP_1230(gene)|go:"GO:0042802"(identical protein binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR021011|interpro:IPR038381|rcsb pdb:2UVP|rcsb pdb:2WP0|refseq:WP_000788231.1|dip:DIP-3677N|mint:O25828|uniprotkb:O25828(identity) refseq:WP_001203260.1|interpro:IPR020094|interpro:IPR001406(tRNA pseudouridine synthase)|interpro:IPR020095|interpro:IPR020097|interpro:IPR020103|refseq:NP_207159.1|ensemblbacteria:AAD07429(transcript)|ensemblbacteria:HP_0361(gene)|go:"GO:0003723"(RNA binding)|go:"GO:0009982"(pseudouridine synthase activity)|go:"GO:0031119"(tRNA pseudouridine synthesis)|go:"GO:0106029"(tRNA pseudouridine synthase activity)|uniprotkb:P56144(identity) psi-mi:"MI:0469"(intact) crc64:91FE4AE113B32E15 - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:AyCnyZ9ycYx0T6cZKpyBiuPAlsY85962 rogid:zYY51Tza1ue5sY41BLJ6EV2hiZM85962 intact-crc:F08EEE0FA9B05E8E|rigid:OwwjUJmcPSnXIYSk07SCb5XGGDE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:P56154 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-7602661|intact:MINT-174705|ensemblbacteria:AAD08386 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:pgk_helpy(display_long)|uniprotkb:HP_1345(locus name)|uniprotkb:pgk(gene name)|psi-mi:pgk(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340413|imex:IM-22256-1316 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) mint:P56154|refseq:WP_000880064.1|refseq:NP_208137.1|ensemblbacteria:AAD08386(transcript)|ensemblbacteria:HP_1345(gene)|go:"GO:0004618"(phosphoglycerate kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0043531"(ADP binding)|interpro:IPR001576(Phosphoglycerate kinase)|interpro:IPR015824(Phosphoglycerate kinase, N-terminal)|interpro:IPR015911(Phosphoglycerate kinase, conserved site)|interpro:IPR036043|dip:DIP-3617N|uniprotkb:P56154(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:Zdkfv7kuRu0/jZwuno6cMp/Ackg85962 intact-crc:B50A4F3165862B1C|rigid:5yPPTM/nu51CMWKFm9w/xfeGrEM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56156 uniprotkb:P56156 intact:EBI-7508353|intact:MINT-179817|ensemblbacteria:AAD07842 intact:EBI-7508353|intact:MINT-179817|ensemblbacteria:AAD07842 psi-mi:clpp_helpy(display_long)|uniprotkb:HP_0794(locus name)|uniprotkb:clpP(gene name)|psi-mi:clpP(display_short)|uniprotkb:Endopeptidase Clp(gene name synonym) psi-mi:clpp_helpy(display_long)|uniprotkb:HP_0794(locus name)|uniprotkb:clpP(gene name)|psi-mi:clpP(display_short)|uniprotkb:Endopeptidase Clp(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340431|imex:IM-22256-1317 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56156|refseq:NP_207587.1|refseq:WP_001853304.1|ensemblbacteria:AAD07842(transcript)|ensemblbacteria:HP_0794(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0009368"(endopeptidase Clp complex)|go:"GO:0051117"(ATPase binding)|interpro:IPR001907(Peptidase S14, ClpP)|interpro:IPR018215|interpro:IPR023562|interpro:IPR029045|rcsb pdb:2ZL0|rcsb pdb:2ZL2|rcsb pdb:2ZL3|rcsb pdb:2ZL4|interpro:IPR033135|dip:DIP-3357N|uniprotkb:P56156(identity) mint:P56156|refseq:NP_207587.1|refseq:WP_001853304.1|ensemblbacteria:AAD07842(transcript)|ensemblbacteria:HP_0794(gene)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0009368"(endopeptidase Clp complex)|go:"GO:0051117"(ATPase binding)|interpro:IPR001907(Peptidase S14, ClpP)|interpro:IPR018215|interpro:IPR023562|interpro:IPR029045|rcsb pdb:2ZL0|rcsb pdb:2ZL2|rcsb pdb:2ZL3|rcsb pdb:2ZL4|interpro:IPR033135|dip:DIP-3357N|uniprotkb:P56156(identity) psi-mi:"MI:0469"(intact) function:Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins|comment:mint function:Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins|comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MWAbD/ZJzbGj5dQ5Pugar54iaEI85962 rogid:MWAbD/ZJzbGj5dQ5Pugar54iaEI85962 intact-crc:12DCF3E407BF577C|rigid:Rv5ysw1TqlsLeCF4ZevT0jcByQU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25378 uniprotkb:P56162 intact:EBI-7672575|ensemblbacteria:AAD07735|intact:MINT-159859 intact:EBI-9273649|ensemblbacteria:AAD08303 psi-mi:o25378_helpy(display_long)|uniprotkb:HP_0667(locus name) psi-mi:pyre_helpy(display_long)|uniprotkb:pyrE(gene name)|psi-mi:pyrE(display_short)|uniprotkb:HP_1257(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340449|imex:IM-22256-1318 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07735(transcript)|ensemblbacteria:HP_0667(gene)|interpro:IPR039442|mint:O25378|dip:DIP-3471N|uniprotkb:O25378(identity) rcsb pdb:4PAW|refseq:WP_000351558.1|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR006273(Orotate phosphoribosyltransferase, Thermus type)|interpro:IPR023031|refseq:NP_208049.1|interpro:IPR029057|ensemblbacteria:AAD08303(transcript)|ensemblbacteria:HP_1257(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004588"(orotate phosphoribosyltransferase activity)|go:"GO:0006222"(UMP biosynthetic process)|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019856"(pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|uniprotkb:P56162(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Rasu23EsBsUF7qWG9M0g8Odk6UM85962 rogid:igTt5G+DWuQGm3iCcZ9riQENe/Q85962 intact-crc:D07348E9A7ACFD5C|rigid:UOTa0jhTep3SjOY2/BL0lH4bjS0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9Z3A7 uniprotkb:P56162 intact:EBI-9264847|ensemblbacteria:AAD06538|ensemblbacteria:AAD06883 intact:EBI-9273649|ensemblbacteria:AAD08303 psi-mi:q9z3a7_helpj(display_long)|uniprotkb:jhp_0958(locus name)|uniprotkb:jhp_1306(locus name) psi-mi:pyre_helpy(display_long)|uniprotkb:pyrE(gene name)|psi-mi:pyrE(display_short)|uniprotkb:HP_1257(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340467|imex:IM-22256-1319 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD06538(transcript)|ensemblbacteria:AAD06883(transcript)|ensemblbacteria:jhp_0958(gene)|ensemblbacteria:jhp_1306(gene)|uniprotkb:Q9Z3A7(identity) rcsb pdb:4PAW|refseq:WP_000351558.1|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR006273(Orotate phosphoribosyltransferase, Thermus type)|interpro:IPR023031|refseq:NP_208049.1|interpro:IPR029057|ensemblbacteria:AAD08303(transcript)|ensemblbacteria:HP_1257(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004588"(orotate phosphoribosyltransferase activity)|go:"GO:0006222"(UMP biosynthetic process)|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019856"(pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|uniprotkb:P56162(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:UZGi2Zy3UKsAkuRx4SF2j3p2eak85963 rogid:igTt5G+DWuQGm3iCcZ9riQENe/Q85962 intact-crc:87EBDCB6100F01B6|rigid:Z+KVQrCKnRzuYQl/+F1qXZDAPYo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56162 uniprotkb:Q9ZKV6 intact:EBI-9273649|ensemblbacteria:AAD08303 intact:EBI-9269982|ensemblbacteria:AAD06406 psi-mi:pyre_helpy(display_long)|uniprotkb:pyrE(gene name)|psi-mi:pyrE(display_short)|uniprotkb:HP_1257(locus name) psi-mi:q9zkv6_helpj(display_long)|uniprotkb:jhp_0829(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340485|imex:IM-22256-1320 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:4PAW|refseq:WP_000351558.1|interpro:IPR000836(Phosphoribosyltransferase)|interpro:IPR006273(Orotate phosphoribosyltransferase, Thermus type)|interpro:IPR023031|refseq:NP_208049.1|interpro:IPR029057|ensemblbacteria:AAD08303(transcript)|ensemblbacteria:HP_1257(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004588"(orotate phosphoribosyltransferase activity)|go:"GO:0006222"(UMP biosynthetic process)|go:"GO:0009116"(nucleoside metabolic process)|go:"GO:0019856"(pyrimidine nucleobase biosynthetic process)|go:"GO:0044205"('de novo' UMP biosynthetic process)|uniprotkb:P56162(identity) ensemblbacteria:AAD06406(transcript)|ensemblbacteria:jhp_0829(gene)|uniprotkb:Q9ZKV6(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:igTt5G+DWuQGm3iCcZ9riQENe/Q85962 rogid:PmSoJZhuDkthv65Gq30HtYlHvTA85963 intact-crc:83F43F59311F1695|rigid:WqMww0y/4ykJsBVmjiNvLGEIE84 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56190 uniprotkb:O25990 intact:EBI-7694966|ensemblbacteria:AAD08212|intact:MINT-159567 intact:EBI-528082|ensemblbacteria:AAD08496 psi-mi:csta_helpy(display_long)|uniprotkb:Carbon starvation protein A homolog(gene name synonym)|uniprotkb:HP_1168(locus name)|uniprotkb:cstA(gene name)|psi-mi:cstA(display_short) psi-mi:o25990_helpy(display_long)|uniprotkb:HP_1451(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340503|imex:IM-22256-1321 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08212(transcript)|ensemblbacteria:HP_1168(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0009267"(cellular response to starvation)|go:"GO:0015031"(protein transport)|go:"GO:0015833"(peptide transport)|go:"GO:0031669"(cellular response to nutrient levels)|interpro:IPR003706(Carbon starvation protein CstA)|mint:P56190|interpro:IPR025299|refseq:NP_207959.1|refseq:WP_001172668.1|uniprotkb:P56190(identity) refseq:NP_208242.1|ensemblbacteria:AAD08496(transcript)|ensemblbacteria:HP_1451(gene)|interpro:IPR015946(K homology-like, alpha/beta)|interpro:IPR032782|interpro:IPR038247|interpro:IPR039247|interpro:IPR040977|rcsb pdb:2PT7|refseq:WP_001178843.1|mint:O25990|dip:DIP-3054N|uniprotkb:O25990(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jwfA8m5yt6xTzlIV+NUYqNRouP485962 rogid:jUaD6lP78st0gdNtmo7yY8Q7A0g85962 intact-crc:80D187050D50F49F|rigid:xGehf1Cqzck82DhuxGc6zAxTobs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56191 uniprotkb:Q9ZKK8 intact:EBI-9273728|ensemblbacteria:AAD07784 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:ddl_helpy(display_long)|uniprotkb:ddl(gene name)|psi-mi:ddl(display_short)|uniprotkb:D-Ala-D-Ala ligase(gene name synonym)|uniprotkb:D-alanylalanine synthetase(gene name synonym)|uniprotkb:ddlA(gene name synonym)|uniprotkb:HP_0738(locus name) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340521|imex:IM-22256-1322 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000393659.1|interpro:IPR000291(D-alanine--D-alanine ligase/VANA/B/C, conserved site)|interpro:IPR005905(D-alanine--D-alanine ligase)|interpro:IPR011095(D-alanine--D-alanine ligase, C-terminal)|interpro:IPR011127(D-alanine--D-alanine ligase, N-terminal)|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR016185(PreATP-grasp-like fold)|rcsb pdb:2PVP|refseq:NP_207532.1|ensemblbacteria:AAD07784(transcript)|ensemblbacteria:HP_0738(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008716"(D-alanine-D-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0071555"(cell wall organization)|uniprotkb:P56191(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mQR0kLo9NLjY69+ywoFbXyDLRZM85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:3C29074D050D22FA|rigid:zc6PIaIdRy17ABOmRHyDal5tmqs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25629 uniprotkb:P56416 intact:EBI-7505515|intact:MINT-163208|ensemblbacteria:AAD08024 intact:EBI-7640830|ensemblbacteria:AAD07819|intact:MINT-176987 psi-mi:ftsa_helpy(display_long)|uniprotkb:ftsA(gene name)|psi-mi:ftsA(display_short)|uniprotkb:HP_0978(locus name) psi-mi:flhb_helpy(display_long)|uniprotkb:flhB(gene name)|psi-mi:flhB(display_short)|uniprotkb:HP_0770(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340539|imex:IM-22256-1323 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25629|refseq:WP_000400290.1|refseq:NP_207769.1|ensemblbacteria:AAD08024(transcript)|ensemblbacteria:HP_0978(gene)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051301"(cell division)|interpro:IPR003494(Cell division protein FtsA)|interpro:IPR020823|interpro:IPR043129|dip:DIP-3124N|uniprotkb:O25629(identity) refseq:WP_000796857.1|ensemblbacteria:AAD07819(transcript)|ensemblbacteria:HP_0770(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR006135(Type III secretion exporter)|interpro:IPR006136(Flagellar biosynthetic protein FlhB)|interpro:IPR029025|mint:P56416|refseq:NP_207563.1|dip:DIP-3472N|uniprotkb:P56416(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein may be involved in anomalous filament growth. May be a component of the septum comment:mint|function:Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jRkQVJaEFRsCXTz0mUmRP13iyes85962 rogid:+7p0CVTd6eiNfCWW74r2uxPm1JY85962 intact-crc:8D34C05A31BFC1B2|rigid:KrkSQpyWDMHCnaW+1n64r14wTHQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25678 uniprotkb:P56416 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-7640830|ensemblbacteria:AAD07819|intact:MINT-176987 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:flhb_helpy(display_long)|uniprotkb:flhB(gene name)|psi-mi:flhB(display_short)|uniprotkb:HP_0770(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340557|imex:IM-22256-1324 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_000796857.1|ensemblbacteria:AAD07819(transcript)|ensemblbacteria:HP_0770(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR006135(Type III secretion exporter)|interpro:IPR006136(Flagellar biosynthetic protein FlhB)|interpro:IPR029025|mint:P56416|refseq:NP_207563.1|dip:DIP-3472N|uniprotkb:P56416(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:+7p0CVTd6eiNfCWW74r2uxPm1JY85962 intact-crc:5EE43CD8533343D0|rigid:fjrKBki+eefEucdOaGQTWjdTNsk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56416 uniprotkb:O26080 intact:EBI-7640830|ensemblbacteria:AAD07819|intact:MINT-176987 intact:EBI-9260543|ensemblbacteria:AAD08598 psi-mi:flhb_helpy(display_long)|uniprotkb:flhB(gene name)|psi-mi:flhB(display_short)|uniprotkb:HP_0770(locus name) psi-mi:o26080_helpy(display_long)|uniprotkb:HP_1558(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340575|imex:IM-22256-1325 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000796857.1|ensemblbacteria:AAD07819(transcript)|ensemblbacteria:HP_0770(gene)|go:"GO:0005886"(plasma membrane)|go:"GO:0009306"(protein secretion)|go:"GO:0016021"(integral component of membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|interpro:IPR006135(Type III secretion exporter)|interpro:IPR006136(Flagellar biosynthetic protein FlhB)|interpro:IPR029025|mint:P56416|refseq:NP_207563.1|dip:DIP-3472N|uniprotkb:P56416(identity) refseq:WP_000480097.1|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR006299(Flagellar basal-body rod protein FlgC)|interpro:IPR010930(Protein of unknown function DUF1078, C-terminal)|interpro:IPR019776|refseq:NP_208349.1|ensemblbacteria:AAD08598(transcript)|ensemblbacteria:HP_1558(gene)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|uniprotkb:O26080(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with fliI and fliH, may constitute the export apparatus of flagellin - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+7p0CVTd6eiNfCWW74r2uxPm1JY85962 rogid:NK49eXTrBL2ujePS/30vk0WPpII85962 intact-crc:612E6CFE1E1FC44D|rigid:G2OElQyYgNN/6dUDE7d5LrwBqrU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56419 uniprotkb:O25218 intact:EBI-7528520|intact:MINT-165640|ensemblbacteria:AAD07841 intact:EBI-9273852|ensemblbacteria:AAD07540 psi-mi:def_helpy(display_long)|uniprotkb:def(gene name)|psi-mi:def(display_short)|uniprotkb:HP_0793(locus name)|uniprotkb:Polypeptide deformylase(gene name synonym) psi-mi:o25218_helpy(display_long)|uniprotkb:HP_0472(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340593|imex:IM-22256-1326 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56419|refseq:WP_001185845.1|refseq:NP_207586.1|ensemblbacteria:AAD07841(transcript)|ensemblbacteria:HP_0793(gene)|go:"GO:0006412"(translation)|go:"GO:0018206"(peptidyl-methionine modification)|go:"GO:0031365"(N-terminal protein amino acid modification)|go:"GO:0042586"(peptide deformylase activity)|go:"GO:0043686"(co-translational protein modification)|go:"GO:0046872"(metal ion binding)|interpro:IPR023635|interpro:IPR036821|dip:DIP-3266N|uniprotkb:P56419(identity) refseq:WP_000595790.1|interpro:IPR002718(Outer membrane protein, Helicobacter)|refseq:NP_207270.1|ensemblbacteria:AAD07540(transcript)|ensemblbacteria:HP_0472(gene)|uniprotkb:O25218(identity) psi-mi:"MI:0469"(intact) function:Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bQFAT9bE3cAPNIJYZ4feEiRjAhY85962 rogid:YaYcUGzNfqNIYsh9I3JuwXlYGJQ85962 intact-crc:47977D30FDED5EC4|rigid:ad3twnlmgmlIuTyxDsr/Q90GBh0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A0U4 uniprotkb:P56421 intact:EBI-7585452|uniprotkb:O25539|intact:MINT-165058|ensemblbacteria:AAD07910 intact:EBI-9273885|ensemblbacteria:AAD07849 psi-mi:hypa_helpy(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:HP_0869(locus name) psi-mi:mog_helpy(display_long)|uniprotkb:mog(gene name)|psi-mi:mog(display_short)|uniprotkb:mogA(gene name synonym)|uniprotkb:HP_0799(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340611|imex:IM-22256-1327 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P0A0U4|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|refseq:WP_000545280.1|interpro:IPR020538|refseq:NP_207663.1|ensemblbacteria:AAD07910(transcript)|ensemblbacteria:HP_0869(gene)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|rcsb pdb:2KDX|uniprotkb:P0A0U4(identity) refseq:WP_001193328.1|interpro:IPR036425|interpro:IPR001453(Molybdopterin binding)|interpro:IPR008284(Molybdenum cofactor biosynthesis, conserved site)|refseq:NP_207592.1|ensemblbacteria:AAD07849(transcript)|ensemblbacteria:HP_0799(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0061598"(molybdopterin adenylyltransferase activity)|uniprotkb:P56421(identity) psi-mi:"MI:0469"(intact) function:Plays a role in both the hydrogenase and the urease nickel cofactor insertion step|comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/TGLQEt3cHQ+0OdYDwS1pk90L3Y85962 rogid:IfTh/mu2FZ/fHL1ZuG6KPIfG5no85962 intact-crc:3C218651880828A7|rigid:b1RB8kUwlQGi31aSm8+dEkiLqtw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56422 uniprotkb:O25693 intact:EBI-7674385|ensemblbacteria:AAD07850|intact:MINT-169161 intact:EBI-9261373|ensemblbacteria:AAD08105 psi-mi:moae_helpy(display_long)|uniprotkb:moaE(gene name)|psi-mi:moaE(display_short)|uniprotkb:HP_0800(locus name)|uniprotkb:Molybdenum cofactor biosynthesis protein E(gene name synonym)|uniprotkb:Molybdopterin-converting factor large subunit(gene name synonym)|uniprotkb:Molybdopterin-converting factor subunit 2(gene name synonym)|uniprotkb:MPT synthase subunit 2(gene name synonym) psi-mi:minc_helpy(display_long)|uniprotkb:minC(gene name)|psi-mi:minC(display_short)|uniprotkb:HP_1053(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340629|imex:IM-22256-1328 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07850(transcript)|ensemblbacteria:HP_0800(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0030366"(molybdopterin synthase activity)|interpro:IPR003448(Molybdopterin biosynthesis MoaE)|interpro:IPR036563|rcsb pdb:3RPF|mint:P56422|refseq:NP_207593.1|refseq:WP_000912676.1|dip:DIP-3522N|uniprotkb:P56422(identity) refseq:WP_000921052.1|refseq:NP_207844.1|interpro:IPR005526(Septum formation inhibitor MinC, C-terminal)|interpro:IPR013033(Septum formation inhibitor MinC)|interpro:IPR016098(Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal)|interpro:IPR036145|ensemblbacteria:AAD08105(transcript)|ensemblbacteria:HP_1053(gene)|go:"GO:0000902"(cell morphogenesis)|go:"GO:0000917"(division septum assembly)|go:"GO:1901891"(regulation of cell septum assembly)|uniprotkb:O25693(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mODLSKLl57eA0erPm1aXRjwb4rQ85962 rogid:bj1yqCAycq4MJipngXWZ34uLzxY85962 intact-crc:2D356D0CED451472|rigid:XkJ0LVhyy83/tNqt03ZetRU09lg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56422 uniprotkb:O25721 intact:EBI-7674385|ensemblbacteria:AAD07850|intact:MINT-169161 intact:EBI-9262771|ensemblbacteria:AAD08136 psi-mi:moae_helpy(display_long)|uniprotkb:moaE(gene name)|psi-mi:moaE(display_short)|uniprotkb:HP_0800(locus name)|uniprotkb:Molybdenum cofactor biosynthesis protein E(gene name synonym)|uniprotkb:Molybdopterin-converting factor large subunit(gene name synonym)|uniprotkb:Molybdopterin-converting factor subunit 2(gene name synonym)|uniprotkb:MPT synthase subunit 2(gene name synonym) psi-mi:o25721_helpy(display_long)|uniprotkb:HP_1089(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340647|imex:IM-22256-1329 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07850(transcript)|ensemblbacteria:HP_0800(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0030366"(molybdopterin synthase activity)|interpro:IPR003448(Molybdopterin biosynthesis MoaE)|interpro:IPR036563|rcsb pdb:3RPF|mint:P56422|refseq:NP_207593.1|refseq:WP_000912676.1|dip:DIP-3522N|uniprotkb:P56422(identity) refseq:WP_001047444.1|interpro:IPR011335(Restriction endonuclease, type II-like, core)|interpro:IPR027417|refseq:NP_207880.1|interpro:IPR038726|ensemblbacteria:AAD08136(transcript)|ensemblbacteria:HP_1089(gene)|uniprotkb:O25721(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mODLSKLl57eA0erPm1aXRjwb4rQ85962 rogid:cj4UolBD2x+jJMZNF8agkRv6zTQ85962 intact-crc:40BC7C6DA504C53A|rigid:NL1HphYyAZLbr4xQOxLf5DO/Lt0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56428 uniprotkb:P56428 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 intact:EBI-7556231|intact:MINT-165542|ensemblbacteria:AAD07868 psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:uvrc_helpy(display_long)|uniprotkb:uvrC(gene name)|psi-mi:uvrC(display_short)|uniprotkb:HP_0821(locus name)|uniprotkb:Excinuclease ABC subunit C(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340665|imex:IM-22256-1330 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) refseq:WP_000774319.1|mint:P56428|refseq:NP_207614.1|ensemblbacteria:AAD07868(transcript)|ensemblbacteria:HP_0821(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|go:"GO:0042802"(identical protein binding)|interpro:IPR000305(Excinuclease ABC, C subunit, N-terminal)|interpro:IPR001162(Excinuclease ABC, C subunit, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004791(Excinuclease ABC, C subunit)|interpro:IPR010994(RuvA domain 2-like)|interpro:IPR035901|interpro:IPR036876|interpro:IPR038476|dip:DIP-3436N|uniprotkb:P56428(identity) psi-mi:"MI:0469"(intact) comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision comment:mint|function:The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 rogid:4rh1lNcCtOfndvgKY8vtnoL/E/M85962 intact-crc:8E4E2A6359B48676|rigid:9wvX+/IHZ2YpS2mzyPMCD0xGDQ8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25107 uniprotkb:P56431 intact:EBI-7553265|intact:MINT-159417|ensemblbacteria:AAD07412 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 psi-mi:o25107_helpy(display_long)|uniprotkb:HP_0340(locus name) psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340683|imex:IM-22256-1331 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001862993.1|mint:O25107|refseq:NP_207138.1|ensemblbacteria:AAD07412(transcript)|ensemblbacteria:HP_0340(gene)|dip:DIP-3383N|uniprotkb:O25107(identity) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:l306qPaaVQ2ZZA8klkmT8i0osH485962 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 intact-crc:142801E1D57DE3A4|rigid:bFDP2WErHusuXvzqXQBfZAyWnY8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56431 uniprotkb:O25488 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 intact:EBI-9263014|ensemblbacteria:AAD07855 psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:acps_helpy(display_long)|uniprotkb:acpS(gene name)|psi-mi:acpS(display_short)|uniprotkb:4'-phosphopantetheinyl transferase AcpS(gene name synonym)|uniprotkb:HP_0808(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340701|imex:IM-22256-1332 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) refseq:WP_000579175.1|rcsb pdb:5XUK|interpro:IPR002582(Holo-[acyl carrier protein] synthase)|interpro:IPR004568(Phosphopantethiene-protein transferase)|interpro:IPR008278(4'-phosphopantetheinyl transferase)|refseq:NP_207601.1|interpro:IPR037143|ensemblbacteria:AAD07855(transcript)|ensemblbacteria:HP_0808(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008897"(holo-[acyl-carrier-protein] synthase activity)|uniprotkb:O25488(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 rogid:0ZJsipvK4gXJAnK0CI38EvTvqP485962 intact-crc:D6E5105DBCEE2FCD|rigid:Tpx9fT9Aj9OcatrlWmqb/VAliow false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56431 uniprotkb:P94845 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 intact:EBI-7655269|ensemblbacteria:AAD07575|intact:MINT-172713 psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:gln1b_helpy(display_long)|uniprotkb:glnA(gene name)|psi-mi:glnA(display_short)|uniprotkb:Glutamate--ammonia ligase(gene name synonym)|uniprotkb:Glutamine synthetase I beta(gene name synonym)|uniprotkb:HP_0512(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340719|imex:IM-22256-1333 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) ensemblbacteria:AAD07575(transcript)|ensemblbacteria:HP_0512(gene)|go:"GO:0004356"(glutamate-ammonia ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006542"(glutamine biosynthetic process)|go:"GO:0016020"(membrane)|go:"GO:0019740"(nitrogen utilization)|go:"GO:0046872"(metal ion binding)|interpro:IPR004809(Glutamine synthetase type I)|interpro:IPR008146(Glutamine synthetase, catalytic region)|interpro:IPR008147(Glutamine synthetase, beta-Grasp)|interpro:IPR014746(Glutamine synthetase/guanido kinase, catalytic region)|interpro:IPR027303|interpro:IPR036651|rcsb pdb:5ZLI|rcsb pdb:5ZLP|mint:P94845|refseq:WP_000637150.1|refseq:NP_207309.1|dip:DIP-3543N|uniprotkb:P94845(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 rogid:zpmPV2MNZAQEHl/xtDP3jWcEdcg85962 intact-crc:8B3C8C54EC8B5C24|rigid:cnq+UT2nJ+9Hyjngx8l7s8uSuK4 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56431 uniprotkb:Q9ZN16 intact:EBI-7597563|intact:MINT-170981|ensemblbacteria:AAD07875 intact:EBI-9260643|ensemblbacteria:AAD05616 psi-mi:trxb_helpy(display_long)|uniprotkb:trxB(gene name)|psi-mi:trxB(display_short)|uniprotkb:HP_0825(locus name) psi-mi:q9zn16_helpj(display_long)|uniprotkb:jhp_0044(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340737|imex:IM-22256-1334 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P56431|refseq:WP_000564420.1|refseq:NP_207618.1|ensemblbacteria:AAD07875(transcript)|ensemblbacteria:HP_0825(gene)|go:"GO:0004791"(thioredoxin-disulfide reductase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0019430"(removal of superoxide radicals)|interpro:IPR005982(Thioredoxin reductase)|interpro:IPR008255(Pyridine nucleotide-disulphide oxidoreductase, class-II, active site)|interpro:IPR023753|interpro:IPR036188|rcsb pdb:2Q0K|rcsb pdb:2Q0L|rcsb pdb:3ISH|dip:DIP-3417N|uniprotkb:P56431(identity) interpro:IPR031303|refseq:WP_010882488.1|interpro:IPR029063|interpro:IPR001525(C-5 cytosine-specific DNA methylase)|ensemblbacteria:AAD05616(transcript)|ensemblbacteria:jhp_0044(gene)|go:"GO:0003886"("DNA (cytosine-5-)-methyltransferase activity")|go:"GO:0009307"(DNA restriction-modification system)|uniprotkb:Q9ZN16(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/kn+tHe2fJcpIGrENK9UwLMDV0s85962 rogid:97jSOZnPcyZguy/Wb15AS+K7Z8A85963 intact-crc:23CA4D3549672226|rigid:oPSiT9kSH3W+d0U72S/kRZPZ+XA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24873 uniprotkb:P56453 intact:EBI-7493488|intact:MINT-163255|ensemblbacteria:AAD07107 intact:EBI-9274102|ensemblbacteria:AAD08002 psi-mi:o24873_helpy(display_long)|uniprotkb:HP_0030(locus name) psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340755|imex:IM-22256-1335 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24873|refseq:NP_206832.1|refseq:WP_000926158.1|ensemblbacteria:AAD07107(transcript)|ensemblbacteria:HP_0030(gene)|dip:DIP-3499N|uniprotkb:O24873(identity) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/WA2RxKnmOtAZF3txrMosHKaCn085962 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 intact-crc:9E57B4AE505E4385|rigid:DZNvsGrq8WMbv+771rkrU8SoWsk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56453 uniprotkb:P56453 intact:EBI-9274102|ensemblbacteria:AAD08002 intact:EBI-9274102|ensemblbacteria:AAD08002 psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:syga_helpy(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym)|uniprotkb:HP_0960(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340773|imex:IM-22256-1336 author score:A and B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) refseq:WP_001150920.1|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|refseq:NP_207752.1|ensemblbacteria:AAD08002(transcript)|ensemblbacteria:HP_0960(gene)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|uniprotkb:P56453(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:"This interaction was detected using both 2-micron high-copy (confidence group B) and CEN low-copy (confidence group A) ori plasmid systems."|author-confidence:A and B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 rogid:OzMW6hybwYF63Goi6djFCAbPxPU85962 intact-crc:019167E61BDFA4B5|rigid:29ninoXiAB6Dl+fC3DyuTU1DtV8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56120 uniprotkb:P56462 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-7505292|intact:MINT-164654|ensemblbacteria:AAD07973 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:gch1_helpy(display_long)|uniprotkb:folE(gene name)|psi-mi:folE(display_short)|uniprotkb:HP_0928(locus name)|uniprotkb:GTP cyclohydrolase I(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340791|imex:IM-22256-1337 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) mint:P56462|refseq:WP_000427004.1|refseq:NP_207720.1|go:"GO:0008270"(zinc ion binding)|go:"GO:0035998"(7,8-dihydroneopterin 3'-triphosphate biosynthetic process)|go:"GO:0046654"(tetrahydrofolate biosynthetic process)|interpro:IPR001474(GTP cyclohydrolase I)|interpro:IPR018234|interpro:IPR020602|interpro:IPR043133|interpro:IPR043134|ensemblbacteria:AAD07973(transcript)|ensemblbacteria:HP_0928(gene)|go:"GO:0003934"(GTP cyclohydrolase I activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006729"(tetrahydrobiopterin biosynthetic process)|go:"GO:0006730"(one-carbon metabolic process)|dip:DIP-3586N|uniprotkb:P56462(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:JNWwOUF1bUepzK0YVn3ctvDZiY885962 intact-crc:E2DB4D14E879D6D7|rigid:mfM4ZSFRgBEaR7wWur3NxVAPnig false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56463 uniprotkb:P56461 intact:EBI-9274282|ensemblbacteria:AAD08222 intact:EBI-9274286|ensemblbacteria:AAD08187 psi-mi:deod_helpy(display_long)|uniprotkb:deoD(gene name)|psi-mi:deoD(display_short)|uniprotkb:HP_1178(locus name) psi-mi:fmt_helpy(display_long)|uniprotkb:fmt(gene name)|psi-mi:fmt(display_short)|uniprotkb:HP_1141(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340809|imex:IM-22256-1338 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:5LU0|refseq:WP_000187711.1|interpro:IPR035994|interpro:IPR000845(Nucleoside phosphorylase)|interpro:IPR004402(Purine nucleoside phosphorylase)|interpro:IPR018016|refseq:NP_207969.1|rcsb pdb:5MX6|rcsb pdb:5MX8|rcsb pdb:6F4W|rcsb pdb:6F4X|rcsb pdb:6F52|rcsb pdb:6F5A|rcsb pdb:6F5I|rcsb pdb:6G7X|ensemblbacteria:AAD08222(transcript)|ensemblbacteria:HP_1178(gene)|go:"GO:0004731"(purine-nucleoside phosphorylase activity)|go:"GO:0042278"(purine nucleoside metabolic process)|uniprotkb:P56463(identity) interpro:IPR041711|refseq:WP_001223483.1|interpro:IPR036477|interpro:IPR002376(Formyl transferase, N-terminal)|interpro:IPR005793(Formyl transferase, C-terminal)|interpro:IPR005794(Methionyl-tRNA formyltransferase)|interpro:IPR011034(Formyl transferase, C-terminal-like)|refseq:NP_207932.1|interpro:IPR044135|ensemblbacteria:AAD08187(transcript)|ensemblbacteria:HP_1141(gene)|go:"GO:0004479"(methionyl-tRNA formyltransferase activity)|go:"GO:0005829"(cytosol)|go:"GO:0071951"(conversion of methionyl-tRNA to N-formyl-methionyl-tRNA)|uniprotkb:P56461(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5MMs3XWnEJiib0BkYNhh9M0iFmM85962 rogid:YfDKOh0DAL1Vkb4OWSYvjEd5GxQ85962 intact-crc:F0792A845D72AA4C|rigid:tdB9of8gJNIu1+0F0UyctXkEeGg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25629 uniprotkb:P56464 intact:EBI-7505515|intact:MINT-163208|ensemblbacteria:AAD08024 intact:EBI-9274302|ensemblbacteria:AAD07626 psi-mi:ftsa_helpy(display_long)|uniprotkb:ftsA(gene name)|psi-mi:ftsA(display_short)|uniprotkb:HP_0978(locus name) psi-mi:acp_helpy(display_long)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short)|uniprotkb:HP_0559(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340827|imex:IM-22256-1339 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25629|refseq:WP_000400290.1|refseq:NP_207769.1|ensemblbacteria:AAD08024(transcript)|ensemblbacteria:HP_0978(gene)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0032153"(cell division site)|go:"GO:0043093"(FtsZ-dependent cytokinesis)|go:"GO:0051301"(cell division)|interpro:IPR003494(Cell division protein FtsA)|interpro:IPR020823|interpro:IPR043129|dip:DIP-3124N|uniprotkb:O25629(identity) refseq:WP_001163100.1|interpro:IPR020806|interpro:IPR036736|interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:NP_207354.1|ensemblbacteria:AAD07626(transcript)|ensemblbacteria:HP_0559(gene)|go:"GO:0000035"(acyl binding)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005829"(cytosol)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0031177"(phosphopantetheine binding)|uniprotkb:P56464(identity) psi-mi:"MI:0469"(intact) comment:mint|function:This protein may be involved in anomalous filament growth. May be a component of the septum - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:jRkQVJaEFRsCXTz0mUmRP13iyes85962 rogid:SNp5ySehTZ+IV2Mfah72iRNLF5885962 intact-crc:54CC117511DC9F1A|rigid:0cboDK9gohl8OvJm4vOd0y3V6rc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25678 uniprotkb:P56464 intact:EBI-7525464|intact:MINT-184070|ensemblbacteria:AAD08077 intact:EBI-9274302|ensemblbacteria:AAD07626 psi-mi:ylxh_helpy(display_long)|uniprotkb:ylxH(gene name)|psi-mi:ylxH(display_short)|uniprotkb:HP_1034(locus name) psi-mi:acp_helpy(display_long)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short)|uniprotkb:HP_0559(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340845|imex:IM-22256-1340 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25678|refseq:WP_001064464.1|refseq:NP_207824.1|ensemblbacteria:AAD08077(transcript)|ensemblbacteria:HP_1034(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0009898"(cytoplasmic side of plasma membrane)|go:"GO:0005829"(cytosol)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0051782"(negative regulation of cell division)|interpro:IPR025501|interpro:IPR027417|interpro:IPR033756|interpro:IPR033875|dip:DIP-3249N|uniprotkb:O25678(identity) refseq:WP_001163100.1|interpro:IPR020806|interpro:IPR036736|interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:NP_207354.1|ensemblbacteria:AAD07626(transcript)|ensemblbacteria:HP_0559(gene)|go:"GO:0000035"(acyl binding)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005829"(cytosol)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0031177"(phosphopantetheine binding)|uniprotkb:P56464(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:h671jWJIBrxg6DKiodkiKZHQpu885962 rogid:SNp5ySehTZ+IV2Mfah72iRNLF5885962 intact-crc:871CEDF773501D78|rigid:ClmhbDStLzKK0DpeZqvEkrw/MCg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56464 uniprotkb:O25872 intact:EBI-9274302|ensemblbacteria:AAD07626 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:acp_helpy(display_long)|uniprotkb:acpP(gene name)|psi-mi:acpP(display_short)|uniprotkb:HP_0559(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340863|imex:IM-22256-1341 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001163100.1|interpro:IPR020806|interpro:IPR036736|interpro:IPR003231("Acyl carrier protein (ACP)")|interpro:IPR006162(Phosphopantetheine attachment site)|interpro:IPR009081(Acyl carrier protein-like)|refseq:NP_207354.1|ensemblbacteria:AAD07626(transcript)|ensemblbacteria:HP_0559(gene)|go:"GO:0000035"(acyl binding)|go:"GO:0000036"(acyl carrier activity)|go:"GO:0005829"(cytosol)|go:"GO:0009245"(lipid A biosynthetic process)|go:"GO:0031177"(phosphopantetheine binding)|uniprotkb:P56464(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:SNp5ySehTZ+IV2Mfah72iRNLF5885962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:E702A1F97B1A3370|rigid:p7wyRGAvmhVwGU5hbS9FfGTJrAw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25092 uniprotkb:P56467 intact:EBI-7493789|intact:MINT-161216|ensemblbacteria:AAD07392 intact:EBI-9274384|ensemblbacteria:AAD07644 psi-mi:flgh_helpy(display_long)|uniprotkb:flgH(gene name)|psi-mi:flgH(display_short)|uniprotkb:HP_0325(locus name)|uniprotkb:Basal body L-ring protein(gene name synonym) psi-mi:fold_helpy(display_long)|uniprotkb:folD(gene name)|psi-mi:folD(display_short)|uniprotkb:HP_0577(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340881|imex:IM-22256-1342 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25092|refseq:NP_207123.1|refseq:WP_000709989.1|ensemblbacteria:AAD07392(transcript)|ensemblbacteria:HP_0325(gene)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0009279"(cell outer membrane)|go:"GO:0009427"(bacterial-type flagellum basal body, distal rod, L ring)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR000527(Flagellar L-ring protein)|dip:DIP-3206N|uniprotkb:O25092(identity) interpro:IPR036291|refseq:NP_207372.1|interpro:IPR000672(Tetrahydrofolate dehydrogenase/cyclohydrolase)|interpro:IPR020630|interpro:IPR020631|interpro:IPR020867|ensemblbacteria:AAD07644(transcript)|ensemblbacteria:HP_0577(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0004477"(methenyltetrahydrofolate cyclohydrolase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006164"(purine nucleotide biosynthetic process)|go:"GO:0009086"(methionine biosynthetic process)|go:"GO:0035999"(tetrahydrofolate interconversion)|go:"GO:0004488"("methylenetetrahydrofolate dehydrogenase (NADP+) activity")|uniprotkb:P56467(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:MrKUGtUwSfmxEg4i9HrJydiu+HU85962 rogid:SZm6dB34/GA+94+/GLvyMGDAjhY85962 intact-crc:09A2EB6F48868131|rigid:p5HP05tdMm1ASyZ9b6AaR4ivPEE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P56120 uniprotkb:P56467 intact:EBI-7695351|ensemblbacteria:AAD07724|intact:MINT-167639 intact:EBI-9274384|ensemblbacteria:AAD07644 psi-mi:rnh_helpy(display_long)|uniprotkb:HP_0661(locus name)|uniprotkb:rnhA(gene name)|psi-mi:rnhA(display_short) psi-mi:fold_helpy(display_long)|uniprotkb:folD(gene name)|psi-mi:folD(display_short)|uniprotkb:HP_0577(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340899|imex:IM-22256-1343 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD07724(transcript)|ensemblbacteria:HP_0661(gene)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0004523"(RNA-DNA hybrid ribonuclease activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0043137"(DNA replication, removal of RNA primer)|go:"GO:0090502"(RNA phosphodiester bond hydrolysis, endonucleolytic)|interpro:IPR002156(Ribonuclease H)|mint:P56120|interpro:IPR022892|refseq:NP_207455.1|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|refseq:WP_001155448.1|interpro:IPR036397|uniprotkb:P56120(identity) interpro:IPR036291|refseq:NP_207372.1|interpro:IPR000672(Tetrahydrofolate dehydrogenase/cyclohydrolase)|interpro:IPR020630|interpro:IPR020631|interpro:IPR020867|ensemblbacteria:AAD07644(transcript)|ensemblbacteria:HP_0577(gene)|go:"GO:0000105"(histidine biosynthetic process)|go:"GO:0004477"(methenyltetrahydrofolate cyclohydrolase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006164"(purine nucleotide biosynthetic process)|go:"GO:0009086"(methionine biosynthetic process)|go:"GO:0035999"(tetrahydrofolate interconversion)|go:"GO:0004488"("methylenetetrahydrofolate dehydrogenase (NADP+) activity")|uniprotkb:P56467(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Endonuclease that specifically degrades the RNA of RNA-DNA hybrids - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:y+aYlCzYquKRwkc2itaguOYT51s85962 rogid:SZm6dB34/GA+94+/GLvyMGDAjhY85962 intact-crc:C91F2943EA096D43|rigid:RmNcyWDeLngmcgwaPlKb7xQe2fg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P60325 uniprotkb:O25417 intact:EBI-7716858|ensemblbacteria:AAD07826|intact:MINT-173310|uniprotkb:O25467|uniprotkb:Q9ZL67 intact:EBI-9262268|ensemblbacteria:AAD07765 psi-mi:rpoz_helpy(display_long)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short)|uniprotkb:HP_0776(locus name)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:RNA polymerase omega subunit(gene name synonym) psi-mi:o25417_helpy(display_long)|uniprotkb:HP_0715(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340917|imex:IM-22256-1344 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P60325|interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|ensemblbacteria:AAD07826(transcript)|ensemblbacteria:HP_0776(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|refseq:WP_000712202.1|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR036161|refseq:NP_207569.1|uniprotkb:P60325(identity) refseq:WP_000353241.1|interpro:IPR030921|interpro:IPR003439(ABC transporter-like)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR017871|interpro:IPR027417|refseq:NP_207509.1|ensemblbacteria:AAD07765(transcript)|ensemblbacteria:HP_0715(gene)|go:"GO:0005524"(ATP binding)|go:"GO:0015803"(branched-chain amino acid transport)|go:"GO:0015807"(L-amino acid transport)|go:"GO:0042626"(ATPase-coupled transmembrane transporter activity)|go:"GO:0043190"("ATP-binding cassette (ABC) transporter complex")|uniprotkb:O25417(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lrHaVe7nTj02K8ZY0B4ByqijDC085962 rogid:EtbfiHVp0ygQ/Yc+5Yl7Y4UZha485962 intact-crc:212DF568C3AF53CF|rigid:ncYBBN7Szs6LmlcUOJQnbpBVRgs false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25495 uniprotkb:P60325 intact:EBI-7501348|intact:MINT-183832|ensemblbacteria:AAD07872 intact:EBI-7716858|ensemblbacteria:AAD07826|intact:MINT-173310|uniprotkb:O25467|uniprotkb:Q9ZL67 psi-mi:o25495_helpy(display_long)|uniprotkb:HP_0817(locus name) psi-mi:rpoz_helpy(display_long)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short)|uniprotkb:HP_0776(locus name)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:RNA polymerase omega subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340935|imex:IM-22256-1345 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O25495|refseq:WP_001081241.1|refseq:NP_207610.1|ensemblbacteria:AAD07872(transcript)|ensemblbacteria:HP_0817(gene)|dip:DIP-3760N|uniprotkb:O25495(identity) mint:P60325|interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|ensemblbacteria:AAD07826(transcript)|ensemblbacteria:HP_0776(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|refseq:WP_000712202.1|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR036161|refseq:NP_207569.1|uniprotkb:P60325(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:/LACxhDQLBeczSx0GBDUbcPtbLc85962 rogid:lrHaVe7nTj02K8ZY0B4ByqijDC085962 intact-crc:0B1040EB9B9AD097|rigid:IWhJ/P/ITvEue+8py1V3Yy597Po false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P60325 uniprotkb:O25546 intact:EBI-7716858|ensemblbacteria:AAD07826|intact:MINT-173310|uniprotkb:O25467|uniprotkb:Q9ZL67 intact:EBI-7585860|intact:MINT-159702|ensemblbacteria:AAD07927 psi-mi:rpoz_helpy(display_long)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short)|uniprotkb:HP_0776(locus name)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:RNA polymerase omega subunit(gene name synonym) psi-mi:o25546_helpy(display_long)|uniprotkb:HP_0879(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340953|imex:IM-22256-1346 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P60325|interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|ensemblbacteria:AAD07826(transcript)|ensemblbacteria:HP_0776(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|refseq:WP_000712202.1|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR036161|refseq:NP_207569.1|uniprotkb:P60325(identity) mint:O25546|refseq:NP_207673.1|ensemblbacteria:AAD07927(transcript)|ensemblbacteria:HP_0879(gene)|interpro:IPR021139|dip:DIP-3561N|uniprotkb:O25546(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lrHaVe7nTj02K8ZY0B4ByqijDC085962 rogid:4BnqcNEFueW/S5HIRLj70hg7sG485962 intact-crc:4E1BC7CCE2ED47EE|rigid:3QDnG8BjGdScLAWrkz8nZWwY92I false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P60325 uniprotkb:O25933 intact:EBI-7716858|ensemblbacteria:AAD07826|intact:MINT-173310|uniprotkb:O25467|uniprotkb:Q9ZL67 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 psi-mi:rpoz_helpy(display_long)|uniprotkb:rpoZ(gene name)|psi-mi:rpoZ(display_short)|uniprotkb:HP_0776(locus name)|uniprotkb:Transcriptase subunit omega(gene name synonym)|uniprotkb:RNA polymerase omega subunit(gene name synonym) psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340971|imex:IM-22256-1347 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P60325|interpro:IPR003716(RNA polymerase, omega subunit)|interpro:IPR006110(RNA polymerase Rpb6)|ensemblbacteria:AAD07826(transcript)|ensemblbacteria:HP_0776(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0006351"(transcription, DNA-templated)|refseq:WP_000712202.1|interpro:IPR012293(RNA polymerase subunit, RPB6/omega)|interpro:IPR036161|refseq:NP_207569.1|uniprotkb:P60325(identity) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits comment:mint figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lrHaVe7nTj02K8ZY0B4ByqijDC085962 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 intact-crc:CC633158550C9359|rigid:GhSqK7B2sUUhgZN1tPnxyHjvxbA false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P66185 uniprotkb:Q9ZKN9 intact:EBI-9274554|uniprotkb:P56053|ensemblbacteria:AAD07617 intact:EBI-9272494|ensemblbacteria:AAD06474 psi-mi:rl31_helpy(display_long)|uniprotkb:rpmE(gene name)|psi-mi:rpmE(display_short)|uniprotkb:HP_0551(locus name) psi-mi:q9zkn9_helpj(display_long)|uniprotkb:jhp_0896(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9340989|imex:IM-22256-1348 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR042105|refseq:WP_000715278.1|interpro:IPR034704|interpro:IPR002150(Ribosomal protein L31)|interpro:IPR027491|refseq:NP_207346.1|ensemblbacteria:AAD07617(transcript)|ensemblbacteria:HP_0551(gene)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|uniprotkb:P66185(identity) ensemblbacteria:AAD06474(transcript)|ensemblbacteria:jhp_0896(gene)|uniprotkb:Q9ZKN9(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:BNQKWWmkmao2hDwrvnrCHkYU9rw85962 rogid:wZWkUz1EqGakwJNkpztuvtP/0LU85963 intact-crc:54061495C2199DFE|rigid:DgxwEv0jaK9rFnTkVTzdocTNfzE false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O24926 uniprotkb:P66928 intact:EBI-7494854|intact:MINT-159805|ensemblbacteria:AAD07168 intact:EBI-9274639|uniprotkb:P56430|ensemblbacteria:AAD07874 psi-mi:queh_helpy(display_long)|uniprotkb:Queuosine biosynthesis protein QueH(gene name synonym)|uniprotkb:HP_0100(locus name)|uniprotkb:queH(gene name)|psi-mi:queH(display_short) psi-mi:thio_helpy(display_long)|uniprotkb:trxA(gene name)|psi-mi:trxA(display_short)|uniprotkb:HP_0824(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341007|imex:IM-22256-1349 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:O24926|refseq:NP_206900.1|refseq:WP_000905219.1|ensemblbacteria:AAD07168(transcript)|ensemblbacteria:HP_0100(gene)|go:"GO:0008033"(tRNA processing)|go:"GO:0008616"(queuosine biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0052693"(epoxyqueuosine reductase activity)|interpro:IPR003828(Protein of unknown function DUF208)|dip:DIP-3170N|uniprotkb:O24926(identity) refseq:WP_000020199.1|interpro:IPR013766(Thioredoxin domain)|interpro:IPR036249|interpro:IPR005746(Thioredoxin)|interpro:IPR017937|refseq:NP_207617.1|rcsb pdb:6BKV|ensemblbacteria:AAD07874(transcript)|ensemblbacteria:HP_0824(gene)|go:"GO:0006662"(glycerol ether metabolic process)|go:"GO:0015035"(protein-disulfide reductase activity)|uniprotkb:P66928(identity) psi-mi:"MI:0469"(intact) comment:mint - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Wq9kyscW1vuBxHL6xNZc6vRBdys85962 rogid:0fwz8OwAwthnN0DONzK2bfG957s85962 intact-crc:C437B73E90D8A398|rigid:UMfkM0djCX8/DxoRH4kMx+nOzhw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P69996 uniprotkb:O25767 intact:EBI-7566591|uniprotkb:P14917|uniprotkb:Q9R3B3|intact:MINT-1567059|ensemblbacteria:AAD07143 intact:EBI-9266862|ensemblbacteria:AAD08193 psi-mi:ure1_helpy(display_long)|uniprotkb:ureB(gene name)|psi-mi:ureB(display_short)|uniprotkb:hpuB(gene name synonym)|uniprotkb:HP_0072(locus name)|uniprotkb:Urea amidohydrolase subunit beta(gene name synonym) psi-mi:rimm_helpy(display_long)|uniprotkb:rimM(gene name)|psi-mi:rimM(display_short)|uniprotkb:HP_1149(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341025|imex:IM-22256-1350 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR005848(Urease, alpha subunit)|interpro:IPR006680(Amidohydrolase 1)|interpro:IPR011612(Urease alpha-subunit, N-terminal)|interpro:IPR032466|mint:P69996|refseq:NP_206872.1|interpro:IPR011059(Metal-dependent hydrolase, composite)|interpro:IPR017951|interpro:IPR017950|ensemblbacteria:AAD07143(transcript)|ensemblbacteria:HP_0072(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0009039"(urease activity)|go:"GO:0016151"(nickel cation binding)|go:"GO:0043419"(urea catabolic process)|rcsb pdb:1E9Y|rcsb pdb:1E9Z|refseq:WP_000724295.1|interpro:IPR029754|uniprotkb:P69996(identity) refseq:WP_000254337.1|interpro:IPR002676(RimM protein)|interpro:IPR009000(Translation elongation and initiation factors/Ribosomal, beta-barrel)|interpro:IPR011033(PRC-barrel-like)|interpro:IPR011961(16S rRNA processing protein RimM)|interpro:IPR027275|refseq:NP_207940.1|interpro:IPR036976|ensemblbacteria:AAD08193(transcript)|ensemblbacteria:HP_1149(gene)|go:"GO:0005737"(cytoplasm)|go:"GO:0005840"(ribosome)|go:"GO:0006364"(rRNA processing)|go:"GO:0042274"(ribosomal small subunit biogenesis)|go:"GO:0043022"(ribosome binding)|uniprotkb:O25767(identity) psi-mi:"MI:0469"(intact) comment:mint|function:Ammonia produced by ureolysis increases the gastric pH thereby providing an environment permissive for colonization of the stomach - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KQKothcOGkI9jaA8M1oLuzrZa5o85962 rogid:9xiE1imgBr+he7Fh0v2pKOttrSo85962 intact-crc:41B84E7ED3DB28F0|rigid:MuVhV5OhzTAkihfmGWlPwhebO+Q false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P94846 uniprotkb:O25831 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9274827|ensemblbacteria:AAD08281 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:o25831_helpy(display_long)|uniprotkb:HP_1233(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341043|imex:IM-22256-1351 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) refseq:WP_000301306.1|refseq:NP_208025.1|ensemblbacteria:AAD08281(transcript)|ensemblbacteria:HP_1233(gene)|uniprotkb:O25831(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:Zf3qYqoSVfMqrH/ujfgcfnqWN9885962 intact-crc:659788BD1BB5153D|rigid:UvPtllXwJJH51wVIrxll/tAZmKo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O25933 uniprotkb:P94846 intact:EBI-7680909|ensemblbacteria:AAD08429|intact:MINT-159889 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 psi-mi:o25933_helpy(display_long)|uniprotkb:HP_1382(locus name) psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341061|imex:IM-22256-1352 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAD08429(transcript)|ensemblbacteria:HP_1382(gene)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|interpro:IPR001604(DNA/RNA non-specific endonuclease)|interpro:IPR020821|mint:O25933|refseq:NP_208173.1|refseq:WP_000182078.1|dip:DIP-3712N|uniprotkb:O25933(identity) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) psi-mi:"MI:0469"(intact) comment:mint comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:bZ7ZrvWR5XcBXMI7sV8MvQx/oq485962 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 intact-crc:053DC10674FC1E52|rigid:BoVSn8+9k9hGXIjCAS6mBx0pCPg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P94846 uniprotkb:O25983 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9264349|ensemblbacteria:AAD08480 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:csra_helpy(display_long)|uniprotkb:csrA(gene name)|psi-mi:csrA(display_short)|uniprotkb:HP_1442(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341079|imex:IM-22256-1353 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) refseq:WP_000906447.1|interpro:IPR003751(Carbon storage regulator)|refseq:NP_208233.1|interpro:IPR036107|ensemblbacteria:AAD08480(transcript)|ensemblbacteria:HP_1442(gene)|go:"GO:0005829"(cytosol)|go:"GO:0006109"(regulation of carbohydrate metabolic process)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0044781"(bacterial-type flagellum organization)|go:"GO:0045947"(negative regulation of translational initiation)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:1902208"(regulation of bacterial-type flagellum assembly)|uniprotkb:O25983(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:y3p1PWLpYIboaDYOBp+v4iF4t3g85962 intact-crc:081E99DC53F4C475|rigid:UEAO1b40XxKbQnm4CI+6/Q/t/DY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P94846 uniprotkb:Q9ZKJ9 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9262963|ensemblbacteria:AAD06514 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:q9zkj9_helpj(display_long)|uniprotkb:jhp_0936(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341097|imex:IM-22256-1354 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) ensemblbacteria:AAD06514(transcript)|ensemblbacteria:jhp_0936(gene)|uniprotkb:Q9ZKJ9(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:WHcY85f5uxFKXOj5CRfTWCSblF885963 intact-crc:B1176DF6859D26AF|rigid:wIirbnps6mns8LAd/8JvH0i7LEg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P94846 uniprotkb:Q9ZKK8 intact:EBI-7524710|intact:MINT-171452|ensemblbacteria:AAD08158 intact:EBI-9264174|ensemblbacteria:AAD06505 psi-mi:uvrb_helpy(display_long)|uniprotkb:uvrB(gene name)|psi-mi:uvrB(display_short)|uniprotkb:HP_1114(locus name)|uniprotkb:Excinuclease ABC subunit B(gene name synonym) psi-mi:q9zkk8_helpj(display_long)|uniprotkb:jhp_0927(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85963(helpj)|taxid:85963(Helicobacter pylori J99) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341115|imex:IM-22256-1355 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:P94846|refseq:WP_001127890.1|refseq:NP_207905.1|ensemblbacteria:AAD08158(transcript)|ensemblbacteria:HP_1114(gene)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0009380"(excinuclease repair complex)|go:"GO:0009381"(excinuclease ABC activity)|go:"GO:0009432"(SOS response)|interpro:IPR001650(DNA/RNA helicase, C-terminal)|interpro:IPR001943(UvrB/UvrC protein)|interpro:IPR004807(Excinuclease ABC, B subunit)|interpro:IPR006935(Restriction endonuclease, type I, R subunit/Type III, Res subunit)|interpro:IPR014001(DEAD-like helicase, N-terminal)|interpro:IPR024759|interpro:IPR027417|interpro:IPR036876|interpro:IPR041471|dip:DIP-3238N|uniprotkb:P94846(identity) ensemblbacteria:AAD06505(transcript)|ensemblbacteria:jhp_0927(gene)|uniprotkb:Q9ZKK8(identity) psi-mi:"MI:0469"(intact) comment:mint|function:"The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one uvrB monomer. DNA wrap is dependent on ATP binding by uvrB and probably causes local melting of the DNA helix, facilitating insertion of uvrB beta-hairpin between the DNA strands. Then uvrB probes one DNA strand for the presence of a lesion. If a lesion is found the uvrA subunits dissociate and the uvrB-DNA preincision complex is formed. This complex is subsequently bound by uvrC and the second uvrB is released. If no lesion is found, the DNA wraps around the other uvrB subunit that will check the other stand for damage" - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:lb7U6tXwVFwFMNc8OVRfO6LRJjw85962 rogid:9wHp9q8W31sToK+B6dQgIM+MO+085963 intact-crc:671EE7533E2DB1A6|rigid:aeA9TcTKDQhrfb08NCrZtPSUyo0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q48262 uniprotkb:O25872 intact:EBI-7680535|ensemblbacteria:AAD08119|intact:MINT-170893 intact:EBI-9260733|ensemblbacteria:AAD08330 psi-mi:nixa_helpy(display_long)|uniprotkb:nixA(gene name)|psi-mi:nixA(display_short)|uniprotkb:HP_1077(locus name) psi-mi:o25872_helpy(display_long)|uniprotkb:HP_1285(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:85962(helpy)|taxid:85962(Helicobacter pylori) taxid:85962(helpy)|taxid:85962(Helicobacter pylori) psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341133|imex:IM-22256-1356 author score:B - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) mint:Q48262|ensemblbacteria:AAD08119(transcript)|ensemblbacteria:HP_1077(gene)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015099"(nickel cation transmembrane transporter activity)|interpro:IPR004688(Nickel/cobalt transporter, high-affinity, bacteria)|interpro:IPR011541(Nickel/cobalt transporter, high-affinity)|refseq:NP_207868.1|refseq:WP_000780430.1|dip:DIP-3647N|uniprotkb:Q48262(identity) interpro:IPR005519("Acid phosphatase (Class B)")|interpro:IPR006423("5-nucleotidase lipoprotein e(P4)")|interpro:IPR023214|refseq:NP_208077.1|interpro:IPR036412|ensemblbacteria:AAD08330(transcript)|ensemblbacteria:HP_1285(gene)|go:"GO:0009279"(cell outer membrane)|uniprotkb:O25872(identity) psi-mi:"MI:0469"(intact) comment:mint|function:High-affinity nickel intake protein. Imports nickel ions in an energy-dependent fashion. Necessary for the expression of catalytically active urease - figure legend:Table S1|comment:This interaction was detected using a 2-micron high-copy ori plasmid system.|author-confidence:B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:89XcWJTRj9h4+fDBXcfjaTKMKOE85962 rogid:8WLV/KIomhQr0ErSyAUgecinHv885962 intact-crc:54FBFCF354CE7FC1|rigid:mOYpOMbTkGcEgXNGqyq3NwBvPxI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P00904 uniprotkb:P00904 intact:EBI-9275092|uniprotkb:P76835|uniprotkb:P78302|uniprotkb:P76833|ensemblbacteria:AAC74345|ensemblbacteria:BAA14798 intact:EBI-9275092|uniprotkb:P76835|uniprotkb:P78302|uniprotkb:P76833|ensemblbacteria:AAC74345|ensemblbacteria:BAA14798 psi-mi:trpgd_ecoli(display_long)|uniprotkb:trpGD(gene name)|psi-mi:trpGD(display_short)|uniprotkb:trpD(gene name synonym)|uniprotkb:JW1255(locus name)|uniprotkb:b1263(locus name) psi-mi:trpgd_ecoli(display_long)|uniprotkb:trpGD(gene name)|psi-mi:trpGD(display_short)|uniprotkb:trpD(gene name synonym)|uniprotkb:JW1255(locus name)|uniprotkb:b1263(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341151|imex:IM-22256-1357 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000763511.1|interpro:IPR035902|interpro:IPR036320|interpro:IPR000312(Glycosyl transferase, family 3)|interpro:IPR005940(Anthranilate phosphoribosyl transferase)|interpro:IPR006221(Glutamine amidotransferase of anthranilate synthase)|interpro:IPR017459(Glycosyl transferase, family 3, N-terminal)|interpro:IPR017926|refseq:NP_415779.1|interpro:IPR029062|ensemblbacteria:AAC74345(transcript)|ensemblbacteria:b1263(gene)|ensemblbacteria:BAA14798(gene)|ensemblbacteria:BAA14798(transcript)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0002047"(phenazine biosynthetic process)|go:"GO:0004048"(anthranilate phosphoribosyltransferase activity)|go:"GO:0004049"(anthranilate synthase activity)|go:"GO:0006541"(glutamine metabolic process)|uniprotkb:P00904(identity) refseq:WP_000763511.1|interpro:IPR035902|interpro:IPR036320|interpro:IPR000312(Glycosyl transferase, family 3)|interpro:IPR005940(Anthranilate phosphoribosyl transferase)|interpro:IPR006221(Glutamine amidotransferase of anthranilate synthase)|interpro:IPR017459(Glycosyl transferase, family 3, N-terminal)|interpro:IPR017926|refseq:NP_415779.1|interpro:IPR029062|ensemblbacteria:AAC74345(transcript)|ensemblbacteria:b1263(gene)|ensemblbacteria:BAA14798(gene)|ensemblbacteria:BAA14798(transcript)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0002047"(phenazine biosynthetic process)|go:"GO:0004048"(anthranilate phosphoribosyltransferase activity)|go:"GO:0004049"(anthranilate synthase activity)|go:"GO:0006541"(glutamine metabolic process)|uniprotkb:P00904(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:hJ2yCeDH3blIiOeVzS5XcKjsdZE83333 rogid:hJ2yCeDH3blIiOeVzS5XcKjsdZE83333 intact-crc:8E4A1D2C471D609C|rigid:uMsZd1EsgjGF9RgJNGR02g+z7nE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P00960 uniprotkb:P00960 intact:EBI-551191|uniprotkb:Q2M7M2|ensemblbacteria:AAC76584|ensemblbacteria:BAE77734 intact:EBI-551191|uniprotkb:Q2M7M2|ensemblbacteria:AAC76584|ensemblbacteria:BAE77734 psi-mi:syga_ecoli(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:"glyS(A)"(gene name synonym)|uniprotkb:b3560(locus name)|uniprotkb:JW3531(locus name)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym) psi-mi:syga_ecoli(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:"glyS(A)"(gene name synonym)|uniprotkb:b3560(locus name)|uniprotkb:JW3531(locus name)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341168|imex:IM-22256-1358 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_418017.1|refseq:WP_001168560.1|dip:DIP-9816N|ensemblbacteria:AAC76584(transcript)|ensemblbacteria:b3560(gene)|ensemblbacteria:BAE77734(gene)|ensemblbacteria:BAE77734(transcript)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|uniprotkb:P00960(identity) refseq:NP_418017.1|refseq:WP_001168560.1|dip:DIP-9816N|ensemblbacteria:AAC76584(transcript)|ensemblbacteria:b3560(gene)|ensemblbacteria:BAE77734(gene)|ensemblbacteria:BAE77734(transcript)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|uniprotkb:P00960(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:p6yFMKEKUSGsA63wvgshRbe25/883333 rogid:p6yFMKEKUSGsA63wvgshRbe25/883333 intact-crc:E9B7D13303DE79BA|rigid:WOUjo/tqGqPAbLqj2kodXXkF2X0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P00960 uniprotkb:P00961 intact:EBI-551191|uniprotkb:Q2M7M2|ensemblbacteria:AAC76584|ensemblbacteria:BAE77734 intact:EBI-551400|uniprotkb:Q2M7M1|ensemblbacteria:AAC76583|ensemblbacteria:BAE77735 psi-mi:syga_ecoli(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:"glyS(A)"(gene name synonym)|uniprotkb:b3560(locus name)|uniprotkb:JW3531(locus name)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym) psi-mi:sygb_ecoli(display_long)|uniprotkb:glyS(gene name)|psi-mi:glyS(display_short)|uniprotkb:"glyS(B)"(gene name synonym)|uniprotkb:b3559(locus name)|uniprotkb:JW3530(locus name)|uniprotkb:Glycyl-tRNA synthetase beta subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341185|imex:IM-22256-1359 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_418017.1|refseq:WP_001168560.1|dip:DIP-9816N|ensemblbacteria:AAC76584(transcript)|ensemblbacteria:b3560(gene)|ensemblbacteria:BAE77734(gene)|ensemblbacteria:BAE77734(transcript)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|uniprotkb:P00960(identity) refseq:NP_418016.1|refseq:WP_001291772.1|dip:DIP-6880N|ensemblbacteria:AAC76583(transcript)|ensemblbacteria:b3559(gene)|ensemblbacteria:BAE77735(gene)|ensemblbacteria:BAE77735(transcript)|go:"GO:0004814"(arginine-tRNA ligase activity)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006420"(arginyl-tRNA aminoacylation)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|interpro:IPR008909(DALR anticodon binding)|interpro:IPR015944(Glycyl-tRNA synthetase, class IIc, beta subunit)|uniprotkb:P00961(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:p6yFMKEKUSGsA63wvgshRbe25/883333 rogid:VXscZnnfr89WEOc49Ns0eUrG28o83333 intact-crc:82595433F66E3CBA|rigid:MmJqJFeEuLLGCACEBeqm1qmRbeg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P06968 uniprotkb:P00960 intact:EBI-907583|uniprotkb:Q2M7V4|ensemblbacteria:AAC76664|ensemblbacteria:BAE77652 intact:EBI-551191|uniprotkb:Q2M7M2|ensemblbacteria:AAC76584|ensemblbacteria:BAE77734 psi-mi:dut_ecoli(display_long)|uniprotkb:dut(gene name)|psi-mi:dut(display_short)|uniprotkb:dnaS(gene name synonym)|uniprotkb:sof(gene name synonym)|uniprotkb:b3640(locus name)|uniprotkb:dUTP pyrophosphatase(gene name synonym)|uniprotkb:JW3615(locus name) psi-mi:syga_ecoli(display_long)|uniprotkb:glyQ(gene name)|psi-mi:glyQ(display_short)|uniprotkb:"glyS(A)"(gene name synonym)|uniprotkb:b3560(locus name)|uniprotkb:JW3531(locus name)|uniprotkb:Glycyl-tRNA synthetase alpha subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341202|imex:IM-22256-1360 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:2HR6|rcsb pdb:2HRM|refseq:NP_418097.1|interpro:IPR008181(DeoxyUTP pyrophosphatase subfamily 1)|rcsb pdb:1DUD|rcsb pdb:1DUP|rcsb pdb:1EU5|rcsb pdb:1EUW|rcsb pdb:1RN8|rcsb pdb:1RNJ|rcsb pdb:1SEH|rcsb pdb:1SYL|interpro:IPR033704|interpro:IPR029054|interpro:IPR036157|rcsb pdb:6HDE|refseq:WP_000976073.1|refseq:WP_001393518.1|ensemblbacteria:AAC76664(transcript)|ensemblbacteria:b3640(gene)|ensemblbacteria:BAE77652(gene)|ensemblbacteria:BAE77652(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004170"(dUTP diphosphatase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006226"(dUMP biosynthetic process)|go:"GO:0032991"(protein-containing complex)|go:"GO:0046081"(dUTP catabolic process)|uniprotkb:P06968(identity) refseq:NP_418017.1|refseq:WP_001168560.1|dip:DIP-9816N|ensemblbacteria:AAC76584(transcript)|ensemblbacteria:b3560(gene)|ensemblbacteria:BAE77734(gene)|ensemblbacteria:BAE77734(transcript)|go:"GO:0004820"(glycine-tRNA ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006426"(glycyl-tRNA aminoacylation)|interpro:IPR002310(Glycyl-tRNA synthetase, class IIc, alpha subunit)|interpro:IPR006194(Glycyl-tRNA synthetase, class II, heterodimeric)|uniprotkb:P00960(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2019/05/28 rogid:pY/mpFvzQaKvlWOL+JeEkKcphTw83333 rogid:p6yFMKEKUSGsA63wvgshRbe25/883333 intact-crc:39B8D84CC9425385|rigid:21onbj4it2btAuyEBFO3OBoz3UY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P02358 uniprotkb:P0A7T7 intact:EBI-543068|uniprotkb:Q2M6A5|ensemblbacteria:AAC77157|ensemblbacteria:BAE78201 intact:EBI-548844|ensemblbacteria:AAC77159|ensemblbacteria:BAE78203|uniprotkb:P02374|uniprotkb:Q2M6A3 psi-mi:rs6_ecoli(display_long)|uniprotkb:rpsF(gene name)|psi-mi:rpsF(display_short)|uniprotkb:Small ribosomal subunit protein bS6(gene name synonym)|uniprotkb:JW4158(locus name)|uniprotkb:b4200(locus name) psi-mi:rs18_ecoli(display_long)|uniprotkb:rpsR(gene name)|psi-mi:rpsR(display_short)|uniprotkb:Small ribosomal subunit protein bS18(gene name synonym)|uniprotkb:JW4160(locus name)|uniprotkb:b4202(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341219|imex:IM-22256-1361 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAC77157(transcript)|ensemblbacteria:b4200(gene)|ensemblbacteria:BAE78201(gene)|ensemblbacteria:BAE78201(transcript)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|interpro:IPR000529(Ribosomal protein S6)|interpro:IPR014717(Translation elongation factor EF1B/ribosomal protein S6)|interpro:IPR020814|interpro:IPR020815|interpro:IPR035980|rcsb pdb:1EG0|rcsb pdb:1M5G|rcsb pdb:2YKR|rcsb pdb:3IY8|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4V70|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5KPS|rcsb pdb:5UYL|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NO4|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|rcsb pdb:5UYQ|rcsb pdb:5UZ4|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6DNC|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6NQB|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6OM6|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6VYQ|rcsb pdb:6VYR|rcsb pdb:6VYS|rcsb pdb:6VYT|rcsb pdb:6VYU|rcsb pdb:6VYX|rcsb pdb:6VYY|rcsb pdb:6VYZ|rcsb pdb:6VZ2|rcsb pdb:6VZ5|rcsb pdb:6VZJ|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6W7W|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6X6T|rcsb pdb:6X7F|rcsb pdb:6X7K|rcsb pdb:6X9Q|rcsb pdb:6XDQ|rcsb pdb:6XDR|rcsb pdb:6XE0|rcsb pdb:6XGF|rcsb pdb:6XII|rcsb pdb:6XIJ|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6Y69|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|rcsb pdb:7K00|rcsb pdb:7O5H|refseq:NP_418621.5|dip:DIP-10782N|uniprotkb:P02358(identity) ensemblbacteria:AAC77159(transcript)|ensemblbacteria:b4202(gene)|ensemblbacteria:BAE78203(gene)|ensemblbacteria:BAE78203(transcript)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|interpro:IPR001648(Ribosomal protein S18)|interpro:IPR018275|interpro:IPR036870|rcsb pdb:1M5G|rcsb pdb:2YKR|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|refseq:NP_418623.1|refseq:WP_000135199.1|dip:DIP-47889N|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XE0|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6Y69|rcsb pdb:6ZTL|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:5UYQ|rcsb pdb:6OG7|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:4V6V|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5J8A|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NO4|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|uniprotkb:P0A7T7(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Ab2SA6wPqg/mJKUOBPK+GNJc20k83333 rogid:7nbSyTfLqHeIzIsihhkoEgEoqgc83333 intact-crc:FE82FB61274BCDBB|rigid:LomUjC00WkkQ7sACJx0RxYcxicI false dna binding domain tag:c-c("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A7T7 uniprotkb:P02358 intact:EBI-548844|ensemblbacteria:AAC77159|ensemblbacteria:BAE78203|uniprotkb:P02374|uniprotkb:Q2M6A3 intact:EBI-543068|uniprotkb:Q2M6A5|ensemblbacteria:AAC77157|ensemblbacteria:BAE78201 psi-mi:rs18_ecoli(display_long)|uniprotkb:rpsR(gene name)|psi-mi:rpsR(display_short)|uniprotkb:Small ribosomal subunit protein bS18(gene name synonym)|uniprotkb:JW4160(locus name)|uniprotkb:b4202(locus name) psi-mi:rs6_ecoli(display_long)|uniprotkb:rpsF(gene name)|psi-mi:rpsF(display_short)|uniprotkb:Small ribosomal subunit protein bS6(gene name synonym)|uniprotkb:JW4158(locus name)|uniprotkb:b4200(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341236|imex:IM-22256-1362 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAC77159(transcript)|ensemblbacteria:b4202(gene)|ensemblbacteria:BAE78203(gene)|ensemblbacteria:BAE78203(transcript)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|interpro:IPR001648(Ribosomal protein S18)|interpro:IPR018275|interpro:IPR036870|rcsb pdb:1M5G|rcsb pdb:2YKR|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|refseq:NP_418623.1|refseq:WP_000135199.1|dip:DIP-47889N|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XE0|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6Y69|rcsb pdb:6ZTL|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:5UYQ|rcsb pdb:6OG7|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:4V6V|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5J8A|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NO4|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|uniprotkb:P0A7T7(identity) ensemblbacteria:AAC77157(transcript)|ensemblbacteria:b4200(gene)|ensemblbacteria:BAE78201(gene)|ensemblbacteria:BAE78201(transcript)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|interpro:IPR000529(Ribosomal protein S6)|interpro:IPR014717(Translation elongation factor EF1B/ribosomal protein S6)|interpro:IPR020814|interpro:IPR020815|interpro:IPR035980|rcsb pdb:1EG0|rcsb pdb:1M5G|rcsb pdb:2YKR|rcsb pdb:3IY8|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4V70|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5KPS|rcsb pdb:5UYL|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NO4|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|rcsb pdb:5UYQ|rcsb pdb:5UZ4|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6DNC|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6NQB|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6OM6|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6VYQ|rcsb pdb:6VYR|rcsb pdb:6VYS|rcsb pdb:6VYT|rcsb pdb:6VYU|rcsb pdb:6VYX|rcsb pdb:6VYY|rcsb pdb:6VYZ|rcsb pdb:6VZ2|rcsb pdb:6VZ5|rcsb pdb:6VZJ|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6W7W|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6X6T|rcsb pdb:6X7F|rcsb pdb:6X7K|rcsb pdb:6X9Q|rcsb pdb:6XDQ|rcsb pdb:6XDR|rcsb pdb:6XE0|rcsb pdb:6XGF|rcsb pdb:6XII|rcsb pdb:6XIJ|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6Y69|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|rcsb pdb:7K00|rcsb pdb:7O5H|refseq:NP_418621.5|dip:DIP-10782N|uniprotkb:P02358(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7nbSyTfLqHeIzIsihhkoEgEoqgc83333 rogid:Ab2SA6wPqg/mJKUOBPK+GNJc20k83333 intact-crc:C2E3C3562174AB40|rigid:LomUjC00WkkQ7sACJx0RxYcxicI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P15070 uniprotkb:P06974 intact:EBI-2011987|ensemblbacteria:AAC75013|ensemblbacteria:BAA15771 intact:EBI-560439|ensemblbacteria:AAC75012|ensemblbacteria:BAA15770 psi-mi:flin_ecoli(display_long)|uniprotkb:fliN(gene name)|psi-mi:fliN(display_short)|uniprotkb:flaN(gene name synonym)|uniprotkb:motD(gene name synonym)|uniprotkb:b1946(locus name)|uniprotkb:JW1930(locus name) psi-mi:flim_ecoli(display_long)|uniprotkb:fla AII(gene name synonym)|uniprotkb:fla QII(gene name synonym)|uniprotkb:b1945(locus name)|uniprotkb:fliM(gene name)|psi-mi:fliM(display_short)|uniprotkb:cheC2(gene name synonym)|uniprotkb:JW1929(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341253|imex:IM-22256-1363 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001282101.1|refseq:NP_416456.1|dip:DIP-1101N|ensemblbacteria:AAC75013(transcript)|ensemblbacteria:b1946(gene)|ensemblbacteria:BAA15771(gene)|ensemblbacteria:BAA15771(transcript)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|interpro:IPR031576|interpro:IPR036429|uniprotkb:P15070(identity) refseq:NP_416455.1|refseq:WP_001350520.1|dip:DIP-1100N|ensemblbacteria:AAC75012(transcript)|ensemblbacteria:b1945(gene)|ensemblbacteria:BAA15770(gene)|ensemblbacteria:BAA15770(transcript)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0050918"(positive chemotaxis)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR001689(Flagellar motor switch protein FliM)|interpro:IPR028976|interpro:IPR036429|rcsb pdb:1F4V|rcsb pdb:1U8T|rcsb pdb:2B1J|uniprotkb:P06974(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9HauA9umxjY245Ou5tq5gCblo7M83333 rogid:awycBhgM8ftzDaQ3phIHB0Lk6so83333 intact-crc:6ADD2D9A6222FE79|rigid:qHKrMMtsTXfqFVE+D5f6rE7sQhg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P07862 uniprotkb:P07862 intact:EBI-1124879|ensemblbacteria:AAC73203|ensemblbacteria:BAB96660 intact:EBI-1124879|ensemblbacteria:AAC73203|ensemblbacteria:BAB96660 psi-mi:ddlb_ecoli(display_long)|uniprotkb:ddlB(gene name)|psi-mi:ddlB(display_short)|uniprotkb:ddl(gene name synonym)|uniprotkb:b0092(locus name)|uniprotkb:JW0090(locus name)|uniprotkb:D-alanylalanine synthetase B(gene name synonym)|uniprotkb:D-Ala-D-Ala ligase B(gene name synonym) psi-mi:ddlb_ecoli(display_long)|uniprotkb:ddlB(gene name)|psi-mi:ddlB(display_short)|uniprotkb:ddl(gene name synonym)|uniprotkb:b0092(locus name)|uniprotkb:JW0090(locus name)|uniprotkb:D-alanylalanine synthetase B(gene name synonym)|uniprotkb:D-Ala-D-Ala ligase B(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341270|imex:IM-22256-1364 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000130056.1|refseq:NP_414634.1|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR000291(D-alanine--D-alanine ligase/VANA/B/C, conserved site)|interpro:IPR005905(D-alanine--D-alanine ligase)|interpro:IPR011095(D-alanine--D-alanine ligase, C-terminal)|interpro:IPR011127(D-alanine--D-alanine ligase, N-terminal)|interpro:IPR016185(PreATP-grasp-like fold)|rcsb pdb:1IOV|rcsb pdb:1IOW|rcsb pdb:2DLN|ensemblbacteria:AAC73203(transcript)|ensemblbacteria:b0092(gene)|ensemblbacteria:BAB96660(gene)|ensemblbacteria:BAB96660(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008716"(D-alanine-D-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0071555"(cell wall organization)|rcsb pdb:4C5A|rcsb pdb:4C5B|rcsb pdb:4C5C|uniprotkb:P07862(identity) refseq:WP_000130056.1|refseq:NP_414634.1|interpro:IPR011761(ATP-grasp fold)|interpro:IPR013815(ATP-grasp fold, subdomain 1)|interpro:IPR000291(D-alanine--D-alanine ligase/VANA/B/C, conserved site)|interpro:IPR005905(D-alanine--D-alanine ligase)|interpro:IPR011095(D-alanine--D-alanine ligase, C-terminal)|interpro:IPR011127(D-alanine--D-alanine ligase, N-terminal)|interpro:IPR016185(PreATP-grasp-like fold)|rcsb pdb:1IOV|rcsb pdb:1IOW|rcsb pdb:2DLN|ensemblbacteria:AAC73203(transcript)|ensemblbacteria:b0092(gene)|ensemblbacteria:BAB96660(gene)|ensemblbacteria:BAB96660(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008716"(D-alanine-D-alanine ligase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0046872"(metal ion binding)|go:"GO:0071555"(cell wall organization)|rcsb pdb:4C5A|rcsb pdb:4C5B|rcsb pdb:4C5C|uniprotkb:P07862(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yeIQVnwVi8w2uunpJPZkiaSEOTo83333 rogid:yeIQVnwVi8w2uunpJPZkiaSEOTo83333 intact-crc:01131B2A11C06413|rigid:1edCBQbPAhpn2ta/9OnLTL4vEj4 false dna binding domain tag:c-c("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A6G3 uniprotkb:P0A964 intact:EBI-1126921|uniprotkb:P41053|ensemblbacteria:AAC75742|ensemblbacteria:BAA16562 intact:EBI-1125947|uniprotkb:P07365|ensemblbacteria:AAC74957|ensemblbacteria:BAA15703 psi-mi:pncc_ecoli(display_long)|uniprotkb:pncC(gene name)|psi-mi:pncC(display_short)|uniprotkb:NMN deamidase(gene name synonym)|uniprotkb:Nicotinamide-nucleotide amidase(gene name synonym)|uniprotkb:ygaD(gene name synonym)|uniprotkb:JW2670(locus name)|uniprotkb:b2700(locus name) psi-mi:chew_ecoli(display_long)|uniprotkb:cheW(gene name)|psi-mi:cheW(display_short)|uniprotkb:b1887(locus name)|uniprotkb:JW1876(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341287|imex:IM-22256-1365 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417180.1|refseq:WP_000132231.1|ensemblbacteria:AAC75742(transcript)|ensemblbacteria:b2700(gene)|ensemblbacteria:BAA16562(gene)|ensemblbacteria:BAA16562(transcript)|go:"GO:0019159"(nicotinamide-nucleotide amidase activity)|go:"GO:0019363"(pyridine nucleotide biosynthetic process)|interpro:IPR008136(CinA, C-terminal)|interpro:IPR036653|dip:DIP-48189N|uniprotkb:P0A6G3(identity) refseq:NP_416401.1|refseq:WP_000147302.1|ensemblbacteria:AAC74957(transcript)|ensemblbacteria:b1887(gene)|ensemblbacteria:BAA15703(gene)|ensemblbacteria:BAA15703(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0009454"(aerotaxis)|go:"GO:0010864"(positive regulation of protein histidine kinase activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0051286"(cell tip)|go:"GO:0051649"(establishment of localization in cell)|go:"GO:0098561"(methyl accepting chemotaxis protein complex)|go:"GO:1901875"(positive regulation of post-translational protein modification)|interpro:IPR002545(CheW-like protein)|interpro:IPR036061|interpro:IPR039315|rcsb pdb:2HO9|rcsb pdb:6S1K|dip:DIP-48236N|uniprotkb:P0A964(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KkJ5ir4mv2y1ZMDAUBVgXnDmZw483333 rogid:/OGVHY27AnQon70G++eaZIx1JAA83333 intact-crc:FEB082771B059E0F|rigid:VHURPmSFb7Y8UD8UC7+Ihsu5eHg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A6G3 uniprotkb:P28638 intact:EBI-1126921|uniprotkb:P41053|ensemblbacteria:AAC75742|ensemblbacteria:BAA16562 intact:EBI-554514|uniprotkb:Q2M8V3|ensemblbacteria:AAC76294|ensemblbacteria:BAE77303 psi-mi:pncc_ecoli(display_long)|uniprotkb:pncC(gene name)|psi-mi:pncC(display_short)|uniprotkb:NMN deamidase(gene name synonym)|uniprotkb:Nicotinamide-nucleotide amidase(gene name synonym)|uniprotkb:ygaD(gene name synonym)|uniprotkb:JW2670(locus name)|uniprotkb:b2700(locus name) psi-mi:yhdj_ecoli(display_long)|uniprotkb:yhdJ(gene name)|psi-mi:yhdJ(display_short)|uniprotkb:b3262(locus name)|uniprotkb:JW5543(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341304|imex:IM-22256-1366 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417180.1|refseq:WP_000132231.1|ensemblbacteria:AAC75742(transcript)|ensemblbacteria:b2700(gene)|ensemblbacteria:BAA16562(gene)|ensemblbacteria:BAA16562(transcript)|go:"GO:0019159"(nicotinamide-nucleotide amidase activity)|go:"GO:0019363"(pyridine nucleotide biosynthetic process)|interpro:IPR008136(CinA, C-terminal)|interpro:IPR036653|dip:DIP-48189N|uniprotkb:P0A6G3(identity) refseq:NP_417728.4|refseq:WP_001258895.1|dip:DIP-12296N|ensemblbacteria:AAC76294(transcript)|ensemblbacteria:b3262(gene)|ensemblbacteria:BAE77303(gene)|ensemblbacteria:BAE77303(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|interpro:IPR029063|uniprotkb:P28638(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:KkJ5ir4mv2y1ZMDAUBVgXnDmZw483333 rogid:7UaZTka6X88HL/D//rz+mzeinbQ83333 intact-crc:FB399F8ED40089A0|rigid:bZu1cSNAUHOrRs+rsn43WWcD9gI false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A6G7 uniprotkb:P0A6G7 intact:EBI-370625|uniprotkb:P19245|uniprotkb:Q2MBY9|ensemblbacteria:AAC73540|ensemblbacteria:BAE76217 intact:EBI-370625|uniprotkb:P19245|uniprotkb:Q2MBY9|ensemblbacteria:AAC73540|ensemblbacteria:BAE76217 psi-mi:clpp_ecoli(display_long)|uniprotkb:clpP(gene name)|psi-mi:clpP(display_short)|uniprotkb:lopP(gene name synonym)|uniprotkb:Endopeptidase Clp(gene name synonym)|uniprotkb:Caseinolytic protease(gene name synonym)|uniprotkb:Protease Ti(gene name synonym)|uniprotkb:Heat shock protein F21.5(gene name synonym)|uniprotkb:b0437(locus name)|uniprotkb:JW0427(locus name) psi-mi:clpp_ecoli(display_long)|uniprotkb:clpP(gene name)|psi-mi:clpP(display_short)|uniprotkb:lopP(gene name synonym)|uniprotkb:Endopeptidase Clp(gene name synonym)|uniprotkb:Caseinolytic protease(gene name synonym)|uniprotkb:Protease Ti(gene name synonym)|uniprotkb:Heat shock protein F21.5(gene name synonym)|uniprotkb:b0437(locus name)|uniprotkb:JW0427(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341321|imex:IM-22256-1367 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000122253.1|refseq:NP_414971.1|go:"GO:0005829"(cytosol)|go:"GO:0006508"(proteolysis)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0008236"(serine-type peptidase activity)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009314"(response to radiation)|go:"GO:0009368"(endopeptidase Clp complex)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0009408"(response to heat)|go:"GO:0010498"(proteasomal protein catabolic process)|go:"GO:0016020"(membrane)|go:"GO:0042802"(identical protein binding)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0051117"(ATPase binding)|interpro:IPR001907(Peptidase S14, ClpP)|interpro:IPR018215|interpro:IPR023562|interpro:IPR029045|interpro:IPR033135|rcsb pdb:1TYF|rcsb pdb:1YG6|rcsb pdb:1YG8|rcsb pdb:2FZS|rcsb pdb:3HLN|rcsb pdb:3MT6|rcsb pdb:6NB1|rcsb pdb:6PO1|rcsb pdb:6PO3|rcsb pdb:6POD|rcsb pdb:6POS|rcsb pdb:6PPE|rcsb pdb:6UQE|rcsb pdb:6UQO|rcsb pdb:6W1Z|rcsb pdb:6W20|rcsb pdb:6W21|rcsb pdb:6WR2|rcsb pdb:6WRF|rcsb pdb:6WSG|ensemblbacteria:AAC73540(transcript)|ensemblbacteria:b0437(gene)|ensemblbacteria:BAE76217(gene)|ensemblbacteria:BAE76217(transcript)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|dip:DIP-31838N|uniprotkb:P0A6G7(identity) refseq:WP_000122253.1|refseq:NP_414971.1|go:"GO:0005829"(cytosol)|go:"GO:0006508"(proteolysis)|go:"GO:0006515"(protein quality control for misfolded or incompletely synthesized proteins)|go:"GO:0008236"(serine-type peptidase activity)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009314"(response to radiation)|go:"GO:0009368"(endopeptidase Clp complex)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0009408"(response to heat)|go:"GO:0010498"(proteasomal protein catabolic process)|go:"GO:0016020"(membrane)|go:"GO:0042802"(identical protein binding)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0051117"(ATPase binding)|interpro:IPR001907(Peptidase S14, ClpP)|interpro:IPR018215|interpro:IPR023562|interpro:IPR029045|interpro:IPR033135|rcsb pdb:1TYF|rcsb pdb:1YG6|rcsb pdb:1YG8|rcsb pdb:2FZS|rcsb pdb:3HLN|rcsb pdb:3MT6|rcsb pdb:6NB1|rcsb pdb:6PO1|rcsb pdb:6PO3|rcsb pdb:6POD|rcsb pdb:6POS|rcsb pdb:6PPE|rcsb pdb:6UQE|rcsb pdb:6UQO|rcsb pdb:6W1Z|rcsb pdb:6W20|rcsb pdb:6W21|rcsb pdb:6WR2|rcsb pdb:6WRF|rcsb pdb:6WSG|ensemblbacteria:AAC73540(transcript)|ensemblbacteria:b0437(gene)|ensemblbacteria:BAE76217(gene)|ensemblbacteria:BAE76217(transcript)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0004252"(serine-type endopeptidase activity)|dip:DIP-31838N|uniprotkb:P0A6G7(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:M9znviYWdujU3uleyh6186V2r7I83333 rogid:M9znviYWdujU3uleyh6186V2r7I83333 intact-crc:88FB1F9950133C0B|rigid:IdNM1h00ESVzkYTOusl7awx0Ryo false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A6V8 uniprotkb:P0A6V8 intact:EBI-1128729|uniprotkb:P46880|uniprotkb:P78276|ensemblbacteria:AAC75447|ensemblbacteria:BAA16258 intact:EBI-1128729|uniprotkb:P46880|uniprotkb:P78276|ensemblbacteria:AAC75447|ensemblbacteria:BAA16258 psi-mi:glk_ecoli(display_long)|uniprotkb:glk(gene name)|psi-mi:glk(display_short)|uniprotkb:b2388(locus name)|uniprotkb:JW2385(locus name)|uniprotkb:Glucose kinase(gene name synonym) psi-mi:glk_ecoli(display_long)|uniprotkb:glk(gene name)|psi-mi:glk(display_short)|uniprotkb:b2388(locus name)|uniprotkb:JW2385(locus name)|uniprotkb:Glucose kinase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341338|imex:IM-22256-1368 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416889.1|interpro:IPR003836(Glucokinase)|refseq:WP_000170346.1|go:"GO:0005524"(ATP binding)|go:"GO:0005536"(glucose binding)|go:"GO:0005829"(cytosol)|go:"GO:0006096"(glycolytic process)|go:"GO:0004340"(glucokinase activity)|ensemblbacteria:AAC75447(transcript)|ensemblbacteria:b2388(gene)|ensemblbacteria:BAA16258(gene)|ensemblbacteria:BAA16258(transcript)|interpro:IPR043129|uniprotkb:P0A6V8(identity) refseq:NP_416889.1|interpro:IPR003836(Glucokinase)|refseq:WP_000170346.1|go:"GO:0005524"(ATP binding)|go:"GO:0005536"(glucose binding)|go:"GO:0005829"(cytosol)|go:"GO:0006096"(glycolytic process)|go:"GO:0004340"(glucokinase activity)|ensemblbacteria:AAC75447(transcript)|ensemblbacteria:b2388(gene)|ensemblbacteria:BAA16258(gene)|ensemblbacteria:BAA16258(transcript)|interpro:IPR043129|uniprotkb:P0A6V8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:1O77nAQW4MBCchkNtsDLakhJx2883333 rogid:1O77nAQW4MBCchkNtsDLakhJx2883333 intact-crc:648090BB27893616|rigid:sV8RmChTbfgWSS1J1uQ1TOmiEF8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A6X1 uniprotkb:P0A6X1 intact:EBI-1113103|uniprotkb:P13580|uniprotkb:Q59405|ensemblbacteria:AAC74294|ensemblbacteria:BAA36068 intact:EBI-1113103|uniprotkb:P13580|uniprotkb:Q59405|ensemblbacteria:AAC74294|ensemblbacteria:BAA36068 psi-mi:hem1_ecoli(display_long)|uniprotkb:hemA(gene name)|psi-mi:hemA(display_short)|uniprotkb:b1210(locus name)|uniprotkb:JW1201(locus name) psi-mi:hem1_ecoli(display_long)|uniprotkb:hemA(gene name)|psi-mi:hemA(display_short)|uniprotkb:b1210(locus name)|uniprotkb:JW1201(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341355|imex:IM-22256-1369 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001299679.1|refseq:NP_415728.1|ensemblbacteria:AAC74294(transcript)|ensemblbacteria:b1210(gene)|ensemblbacteria:BAA36068(gene)|ensemblbacteria:BAA36068(transcript)|go:"GO:0008883"(glutamyl-tRNA reductase activity)|go:"GO:0019353"(protoporphyrinogen IX biosynthetic process from glutamate)|go:"GO:0042802"(identical protein binding)|go:"GO:0050661"(NADP binding)|interpro:IPR000343(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase)|interpro:IPR006151(Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase)|interpro:IPR015895(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal)|interpro:IPR015896(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal)|interpro:IPR018214|interpro:IPR036291|interpro:IPR036343|interpro:IPR036453|dip:DIP-9877N|uniprotkb:P0A6X1(identity) refseq:WP_001299679.1|refseq:NP_415728.1|ensemblbacteria:AAC74294(transcript)|ensemblbacteria:b1210(gene)|ensemblbacteria:BAA36068(gene)|ensemblbacteria:BAA36068(transcript)|go:"GO:0008883"(glutamyl-tRNA reductase activity)|go:"GO:0019353"(protoporphyrinogen IX biosynthetic process from glutamate)|go:"GO:0042802"(identical protein binding)|go:"GO:0050661"(NADP binding)|interpro:IPR000343(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase)|interpro:IPR006151(Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase)|interpro:IPR015895(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal)|interpro:IPR015896(Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal)|interpro:IPR018214|interpro:IPR036291|interpro:IPR036343|interpro:IPR036453|dip:DIP-9877N|uniprotkb:P0A6X1(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:udrDgKqpOj/42Nux5gTB3zYAwQA83333 rogid:udrDgKqpOj/42Nux5gTB3zYAwQA83333 intact-crc:88B5AC926CBE4A76|rigid:ADNr5J83OQ9icnwPx7WIniFwAkY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P33024 uniprotkb:P0A700 intact:EBI-555799|uniprotkb:Q2MAR5|ensemblbacteria:AAC75225|ensemblbacteria:BAE76641 intact:EBI-6290024|ensemblbacteria:AAC75768|ensemblbacteria:BAE76803|uniprotkb:P24189|uniprotkb:Q2MAA3 psi-mi:psut_ecoli(display_long)|uniprotkb:psuT(gene name)|psi-mi:psuT(display_short)|uniprotkb:b2164(locus name)|uniprotkb:JW2151(locus name)|uniprotkb:yeiM(gene name synonym)|uniprotkb:pscT(gene name synonym) psi-mi:hypa_ecoli(display_long)|uniprotkb:hypA(gene name)|psi-mi:hypA(display_short)|uniprotkb:b2726(locus name)|uniprotkb:JW2696(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341372|imex:IM-22256-1370 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416669.1|refseq:WP_000353878.1|dip:DIP-11925N|interpro:IPR002668(Na+ dependent nucleoside transporter)|interpro:IPR008276(Concentrative nucleoside transporter)|interpro:IPR011657(Na+ dependent nucleoside transporter, C-terminal)|interpro:IPR018270|ensemblbacteria:AAC75225(transcript)|ensemblbacteria:b2164(gene)|ensemblbacteria:BAE76641(gene)|ensemblbacteria:BAE76641(transcript)|go:"GO:0005337"(nucleoside transmembrane transporter activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0015293"(symporter activity)|go:"GO:1901642"(nucleoside transmembrane transport)|uniprotkb:P33024(identity) ensemblbacteria:AAC75768(transcript)|ensemblbacteria:b2726(gene)|ensemblbacteria:BAE76803(gene)|ensemblbacteria:BAE76803(transcript)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0031234"(extrinsic component of cytoplasmic side of plasma membrane)|go:"GO:0042802"(identical protein binding)|go:"GO:0051604"(protein maturation)|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|interpro:IPR020538|refseq:WP_001299100.1|dip:DIP-48022N|refseq:NP_417206.1|uniprotkb:P0A700(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:WqGgMW+CrqjCrWUNmsR9sXFBsMs83333 rogid:Ean6OfcE8MFqbj2442Oswl0KWBA83333 intact-crc:0972BFFDFB47EE1E|rigid:C5iWF4skG+G0MVvImzWsUVQSlZg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A6H1 uniprotkb:P0A746 intact:EBI-547386|uniprotkb:P33138|uniprotkb:Q2MBY8|ensemblbacteria:AAC73541|ensemblbacteria:BAE76218 intact:EBI-9151577|uniprotkb:P76912|uniprotkb:P76232|uniprotkb:P39903|ensemblbacteria:AAC74848|ensemblbacteria:BAA15575 psi-mi:clpx_ecoli(display_long)|uniprotkb:clpX(gene name)|psi-mi:clpX(display_short)|uniprotkb:lopC(gene name synonym)|uniprotkb:b0438(locus name)|uniprotkb:JW0428(locus name)|uniprotkb:ATP-dependent unfoldase ClpX(gene name synonym) psi-mi:msrb_ecoli(display_long)|uniprotkb:msrB(gene name)|psi-mi:msrB(display_short)|uniprotkb:"Peptide-methionine (R)-S-oxide reductase"(gene name synonym)|uniprotkb:yeaA(gene name synonym)|uniprotkb:JW1767(locus name)|uniprotkb:b1778(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341389|imex:IM-22256-1371 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_414972.1|refseq:WP_000130305.1|ensemblbacteria:AAC73541(transcript)|ensemblbacteria:b0438(gene)|ensemblbacteria:BAE76218(gene)|ensemblbacteria:BAE76218(transcript)|go:"GO:0002020"(protease binding)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006457"(protein folding)|go:"GO:0006508"(proteolysis)|go:"GO:0008270"(zinc ion binding)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0030163"(protein catabolic process)|go:"GO:0030164"(protein denaturation)|go:"GO:0042802"(identical protein binding)|go:"GO:0043335"(protein unfolding)|go:"GO:0046983"(protein dimerization activity)|go:"GO:0051082"(unfolded protein binding)|go:"GO:0051301"(cell division)|go:"GO:0097718"(disordered domain specific binding)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004487(ClpX, ATPase regulatory subunit)|interpro:IPR010603(Zinc finger, C4-type)|interpro:IPR019489|interpro:IPR027417|interpro:IPR038366|rcsb pdb:1OVX|rcsb pdb:2DS5|rcsb pdb:2DS6|rcsb pdb:2DS7|rcsb pdb:2DS8|rcsb pdb:3HTE|rcsb pdb:3HWS|rcsb pdb:4I34|rcsb pdb:4I4L|rcsb pdb:4I5O|rcsb pdb:4I63|rcsb pdb:4I81|rcsb pdb:4I9K|rcsb pdb:6PO1|rcsb pdb:6PO3|rcsb pdb:6POD|rcsb pdb:6POS|rcsb pdb:6PP5|rcsb pdb:6PP6|rcsb pdb:6PP7|rcsb pdb:6PP8|rcsb pdb:6PPE|rcsb pdb:6WR2|rcsb pdb:6WRF|rcsb pdb:6WSG|dip:DIP-35907N|uniprotkb:P0A6H1(identity) refseq:NP_416292.1|refseq:WP_001284618.1|dip:DIP-48167N|ensemblbacteria:AAC74848(transcript)|ensemblbacteria:b1778(gene)|ensemblbacteria:BAA15575(gene)|ensemblbacteria:BAA15575(transcript)|go:"GO:0005506"(iron ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0008270"(zinc ion binding)|go:"GO:0030091"(protein repair)|go:"GO:0033743"("peptide-methionine (R)-S-oxide reductase activity")|interpro:IPR002579(Methionine sulphoxide reductase B)|interpro:IPR011057(Mss4-like)|interpro:IPR028427|rcsb pdb:6SYM|uniprotkb:P0A746(identity) psi-mi:"MI:0469"(intact) - caution:This sequence has been withdrawn from Uniprot.|crc64:7B9B783DBEBE0F71 figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:6//qYAydC2CE8MbKznReK0+ywDk83333 rogid:zeUQBh2W5q5FyvYv8y3dcP42SJQ83333 intact-crc:ECF1174C9C34B2DE|rigid:yUFOQvuva0/Py7vM4rql4pw84CA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A746 uniprotkb:P75617 intact:EBI-9151577|uniprotkb:P76912|uniprotkb:P76232|uniprotkb:P39903|ensemblbacteria:AAC74848|ensemblbacteria:BAA15575 intact:EBI-1128411|uniprotkb:Q2MCH9|uniprotkb:Q47290|ensemblbacteria:AAC73122|ensemblbacteria:BAE76027 psi-mi:msrb_ecoli(display_long)|uniprotkb:msrB(gene name)|psi-mi:msrB(display_short)|uniprotkb:"Peptide-methionine (R)-S-oxide reductase"(gene name synonym)|uniprotkb:yeaA(gene name synonym)|uniprotkb:JW1767(locus name)|uniprotkb:b1778(locus name) psi-mi:yaaw_ecoli(display_long)|uniprotkb:yaaW(gene name)|psi-mi:yaaW(display_short)|uniprotkb:b0011(locus name)|uniprotkb:JW0010(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341406|imex:IM-22256-1372 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416292.1|refseq:WP_001284618.1|dip:DIP-48167N|ensemblbacteria:AAC74848(transcript)|ensemblbacteria:b1778(gene)|ensemblbacteria:BAA15575(gene)|ensemblbacteria:BAA15575(transcript)|go:"GO:0005506"(iron ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0008270"(zinc ion binding)|go:"GO:0030091"(protein repair)|go:"GO:0033743"("peptide-methionine (R)-S-oxide reductase activity")|interpro:IPR002579(Methionine sulphoxide reductase B)|interpro:IPR011057(Mss4-like)|interpro:IPR028427|rcsb pdb:6SYM|uniprotkb:P0A746(identity) refseq:NP_414552.1|refseq:WP_001102367.1|ensemblbacteria:AAC73122(transcript)|ensemblbacteria:b0011(gene)|ensemblbacteria:BAE76027(gene)|ensemblbacteria:BAE76027(transcript)|interpro:IPR021150|interpro:IPR025217|dip:DIP-11163N|uniprotkb:P75617(identity) psi-mi:"MI:0469"(intact) caution:This sequence has been withdrawn from Uniprot.|crc64:7B9B783DBEBE0F71 - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:zeUQBh2W5q5FyvYv8y3dcP42SJQ83333 rogid:63ygdvn6hZUjrf+chLlnY6rghys83333 intact-crc:E7D9F6108BFAA0C0|rigid:PoS2jsj+os+QMD2HhRzWiQ4cl8Y false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P07014 uniprotkb:P0A776 intact:EBI-1035514|ensemblbacteria:AAC73818|ensemblbacteria:BAA35391 intact:EBI-562338|ensemblbacteria:AAC75869|ensemblbacteria:BAE76899|uniprotkb:Q2MA07|uniprotkb:Q46930 psi-mi:sdhb_ecoli(display_long)|uniprotkb:sdhB(gene name)|psi-mi:sdhB(display_short)|uniprotkb:b0724(locus name)|uniprotkb:JW0714(locus name) psi-mi:rpph_ecoli(display_long)|uniprotkb:nudH(gene name synonym)|uniprotkb:ygdP(gene name synonym)|uniprotkb:"(Di)nucleoside polyphosphate hydrolase"(gene name synonym)|uniprotkb:Ap5A pyrophosphatase(gene name synonym)|uniprotkb:rppH(gene name)|psi-mi:rppH(display_short)|uniprotkb:b2830(locus name)|uniprotkb:JW2798(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341423|imex:IM-22256-1373 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415252.1|refseq:WP_001235254.1|ensemblbacteria:AAC73818(transcript)|ensemblbacteria:b0724(gene)|ensemblbacteria:BAA35391(gene)|ensemblbacteria:BAA35391(transcript)|go:"GO:0005886"(plasma membrane)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0008177"("succinate dehydrogenase (ubiquinone) activity")|go:"GO:0009055"(electron transfer activity)|go:"GO:0009060"(aerobic respiration)|go:"GO:0022904"(respiratory electron transport chain)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|interpro:IPR036010|rcsb pdb:1NEK|rcsb pdb:1NEN|rcsb pdb:2ACZ|rcsb pdb:2AD0|rcsb pdb:2WDQ|rcsb pdb:2WDR|rcsb pdb:2WDV|rcsb pdb:2WP9|rcsb pdb:2WS3|rcsb pdb:2WU2|rcsb pdb:2WU5|rcsb pdb:7JZ2|dip:DIP-10836N|uniprotkb:P07014(identity) ensemblbacteria:AAC75869(transcript)|ensemblbacteria:b2830(gene)|ensemblbacteria:BAE76899(gene)|ensemblbacteria:BAE76899(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0008033"(tRNA processing)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0034353"(RNA pyrophosphohydrolase activity)|go:"GO:0050779"(RNA destabilization)|go:"GO:0110153"("RNA NAD-cap (NMN-forming) hydrolase activity")|go:"GO:0110154"(RNA decapping)|go:"GO:0110155"(NAD-cap decapping)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR015797(NUDIX)|interpro:IPR020084|interpro:IPR020476|interpro:IPR022927|rcsb pdb:2KDV|rcsb pdb:2KDW|rcsb pdb:4S2V|rcsb pdb:4S2W|rcsb pdb:4S2X|rcsb pdb:4S2Y|rcsb pdb:5YGU|rcsb pdb:6VCK|rcsb pdb:6VCL|rcsb pdb:6VCM|rcsb pdb:6VCN|rcsb pdb:6VCO|rcsb pdb:6VCP|rcsb pdb:6VCQ|rcsb pdb:6VCR|refseq:NP_417307.1|refseq:WP_000564489.1|dip:DIP-47855N|uniprotkb:P0A776(identity) psi-mi:"MI:0469"(intact) - crc64:AF701FE93450C6D4 figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:v+Qd4uHttyDyhjtI99rbFAkaN9c83333 rogid:sYBYdn/bLsxLtIXXrZWn4uVZYaE83333 intact-crc:94D966052FD9A3D7|rigid:bI/z0UOkQj3+d2PagfhQEyIOvsk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A776 uniprotkb:P0AC47 intact:EBI-562338|ensemblbacteria:AAC75869|ensemblbacteria:BAE76899|uniprotkb:Q2MA07|uniprotkb:Q46930 intact:EBI-906724|uniprotkb:P00364|uniprotkb:Q2M6E9|ensemblbacteria:AAC77113|ensemblbacteria:BAE78157 psi-mi:rpph_ecoli(display_long)|uniprotkb:nudH(gene name synonym)|uniprotkb:ygdP(gene name synonym)|uniprotkb:"(Di)nucleoside polyphosphate hydrolase"(gene name synonym)|uniprotkb:Ap5A pyrophosphatase(gene name synonym)|uniprotkb:rppH(gene name)|psi-mi:rppH(display_short)|uniprotkb:b2830(locus name)|uniprotkb:JW2798(locus name) psi-mi:frdb_ecoli(display_long)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:JW4114(locus name)|uniprotkb:b4153(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341440|imex:IM-22256-1374 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAC75869(transcript)|ensemblbacteria:b2830(gene)|ensemblbacteria:BAE76899(gene)|ensemblbacteria:BAE76899(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0008033"(tRNA processing)|go:"GO:0016818"(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)|go:"GO:0034353"(RNA pyrophosphohydrolase activity)|go:"GO:0050779"(RNA destabilization)|go:"GO:0110153"("RNA NAD-cap (NMN-forming) hydrolase activity")|go:"GO:0110154"(RNA decapping)|go:"GO:0110155"(NAD-cap decapping)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR015797(NUDIX)|interpro:IPR020084|interpro:IPR020476|interpro:IPR022927|rcsb pdb:2KDV|rcsb pdb:2KDW|rcsb pdb:4S2V|rcsb pdb:4S2W|rcsb pdb:4S2X|rcsb pdb:4S2Y|rcsb pdb:5YGU|rcsb pdb:6VCK|rcsb pdb:6VCL|rcsb pdb:6VCM|rcsb pdb:6VCN|rcsb pdb:6VCO|rcsb pdb:6VCP|rcsb pdb:6VCQ|rcsb pdb:6VCR|refseq:NP_417307.1|refseq:WP_000564489.1|dip:DIP-47855N|uniprotkb:P0A776(identity) refseq:NP_418577.1|refseq:WP_000829498.1|dip:DIP-9682N|ensemblbacteria:AAC77113(transcript)|ensemblbacteria:b4153(gene)|ensemblbacteria:BAE78157(gene)|ensemblbacteria:BAE78157(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0006113"(fermentation)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016020"(membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0045284"(plasma membrane fumarate reductase complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|go:"GO:0102040"("fumarate reductase (menaquinone)")|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|interpro:IPR036010|rcsb pdb:1KF6|rcsb pdb:1KFY|rcsb pdb:1L0V|rcsb pdb:2B76|rcsb pdb:3CIR|rcsb pdb:3P4P|rcsb pdb:3P4Q|rcsb pdb:3P4R|rcsb pdb:3P4S|uniprotkb:P0AC47(identity) psi-mi:"MI:0469"(intact) crc64:AF701FE93450C6D4 - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:sYBYdn/bLsxLtIXXrZWn4uVZYaE83333 rogid:6BEDH9lhrN3Ahc7QDc8KQG9AFZY83333 intact-crc:59B14D654B7A6FAB|rigid:OOj316Y07Vr1CnCj7QmhIsdWBcw false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P15070 uniprotkb:P0A7A5 intact:EBI-2011987|ensemblbacteria:AAC75013|ensemblbacteria:BAA15771 intact:EBI-9134975|uniprotkb:Q2MA86|uniprotkb:P24206|ensemblbacteria:AAC75785|ensemblbacteria:BAE76820 psi-mi:flin_ecoli(display_long)|uniprotkb:fliN(gene name)|psi-mi:fliN(display_short)|uniprotkb:flaN(gene name synonym)|uniprotkb:motD(gene name synonym)|uniprotkb:b1946(locus name)|uniprotkb:JW1930(locus name) psi-mi:pimt_ecoli(display_long)|uniprotkb:L-isoaspartyl protein carboxyl methyltransferase(gene name synonym)|uniprotkb:Protein L-isoaspartyl methyltransferase(gene name synonym)|uniprotkb:Protein-beta-aspartate methyltransferase(gene name synonym)|uniprotkb:JW2713(locus name)|uniprotkb:b2743(locus name)|uniprotkb:pcm(gene name)|psi-mi:pcm(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341457|imex:IM-22256-1375 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001282101.1|refseq:NP_416456.1|dip:DIP-1101N|ensemblbacteria:AAC75013(transcript)|ensemblbacteria:b1946(gene)|ensemblbacteria:BAA15771(gene)|ensemblbacteria:BAA15771(transcript)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|interpro:IPR031576|interpro:IPR036429|uniprotkb:P15070(identity) interpro:IPR000682("Protein-L-isoaspartate(D-aspartate) O-methyltransferase")|rcsb pdb:3LBF|refseq:NP_417223.1|refseq:WP_000254708.1|interpro:IPR029063|ensemblbacteria:AAC75785(transcript)|ensemblbacteria:b2743(gene)|ensemblbacteria:BAE76820(gene)|ensemblbacteria:BAE76820(transcript)|go:"GO:0004719"("protein-L-isoaspartate (D-aspartate) O-methyltransferase activity")|go:"GO:0005737"(cytoplasm)|go:"GO:0030091"(protein repair)|uniprotkb:P0A7A5(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9HauA9umxjY245Ou5tq5gCblo7M83333 rogid:d4S7kCtsAPyr8/SbzAywPJND1gc83333 intact-crc:8C3DF251BC8259C0|rigid:1Q5RCCitPU22czps/CPCLd7QQyE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A7B8 uniprotkb:P0A7B8 intact:EBI-552265|uniprotkb:P31059|uniprotkb:P97542|uniprotkb:Q2M8M8|ensemblbacteria:AAC76914|ensemblbacteria:BAE77378 intact:EBI-552265|uniprotkb:P31059|uniprotkb:P97542|uniprotkb:Q2M8M8|ensemblbacteria:AAC76914|ensemblbacteria:BAE77378 psi-mi:hslv_ecoli(display_long)|uniprotkb:hslV(gene name)|psi-mi:hslV(display_short)|uniprotkb:htpO(gene name synonym)|uniprotkb:b3932(locus name)|uniprotkb:yiiC(gene name synonym)|uniprotkb:Heat shock protein HslV(gene name synonym)|uniprotkb:JW3903(locus name) psi-mi:hslv_ecoli(display_long)|uniprotkb:hslV(gene name)|psi-mi:hslV(display_short)|uniprotkb:htpO(gene name synonym)|uniprotkb:b3932(locus name)|uniprotkb:yiiC(gene name synonym)|uniprotkb:Heat shock protein HslV(gene name synonym)|uniprotkb:JW3903(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341474|imex:IM-22256-1376 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_418367.1|refseq:WP_000208242.1|dip:DIP-35866N|ensemblbacteria:AAC76914(transcript)|ensemblbacteria:b3932(gene)|ensemblbacteria:BAE77378(gene)|ensemblbacteria:BAE77378(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004298"(threonine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0005839"(proteasome core complex)|go:"GO:0006508"(proteolysis)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0009408"(response to heat)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0042802"(identical protein binding)|go:"GO:0051603"(proteolysis involved in cellular protein catabolic process)|interpro:IPR001353(20S proteasome, A and B subunits)|interpro:IPR022281|interpro:IPR023333|interpro:IPR029055|rcsb pdb:1E94|rcsb pdb:1G4A|rcsb pdb:1G4B|rcsb pdb:1HQY|rcsb pdb:1HT1|rcsb pdb:1HT2|rcsb pdb:1NED|rcsb pdb:4G4E|rcsb pdb:5JI3|rcsb pdb:6PXI|uniprotkb:P0A7B8(identity) refseq:NP_418367.1|refseq:WP_000208242.1|dip:DIP-35866N|ensemblbacteria:AAC76914(transcript)|ensemblbacteria:b3932(gene)|ensemblbacteria:BAE77378(gene)|ensemblbacteria:BAE77378(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004298"(threonine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0005839"(proteasome core complex)|go:"GO:0006508"(proteolysis)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0009408"(response to heat)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0042802"(identical protein binding)|go:"GO:0051603"(proteolysis involved in cellular protein catabolic process)|interpro:IPR001353(20S proteasome, A and B subunits)|interpro:IPR022281|interpro:IPR023333|interpro:IPR029055|rcsb pdb:1E94|rcsb pdb:1G4A|rcsb pdb:1G4B|rcsb pdb:1HQY|rcsb pdb:1HT1|rcsb pdb:1HT2|rcsb pdb:1NED|rcsb pdb:4G4E|rcsb pdb:5JI3|rcsb pdb:6PXI|uniprotkb:P0A7B8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:8q8Ps3ek2qLLuIwtux7TR7EQ70g83333 rogid:8q8Ps3ek2qLLuIwtux7TR7EQ70g83333 intact-crc:DA0ACD580EDE9203|rigid:MWXS7L0Wtdobs/0ttHpF/lTUwBk false dna binding domain tag:c-c("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A7B8 uniprotkb:P0A7B8 intact:EBI-552265|uniprotkb:P31059|uniprotkb:P97542|uniprotkb:Q2M8M8|ensemblbacteria:AAC76914|ensemblbacteria:BAE77378 intact:EBI-552265|uniprotkb:P31059|uniprotkb:P97542|uniprotkb:Q2M8M8|ensemblbacteria:AAC76914|ensemblbacteria:BAE77378 psi-mi:hslv_ecoli(display_long)|uniprotkb:hslV(gene name)|psi-mi:hslV(display_short)|uniprotkb:htpO(gene name synonym)|uniprotkb:b3932(locus name)|uniprotkb:yiiC(gene name synonym)|uniprotkb:Heat shock protein HslV(gene name synonym)|uniprotkb:JW3903(locus name) psi-mi:hslv_ecoli(display_long)|uniprotkb:hslV(gene name)|psi-mi:hslV(display_short)|uniprotkb:htpO(gene name synonym)|uniprotkb:b3932(locus name)|uniprotkb:yiiC(gene name synonym)|uniprotkb:Heat shock protein HslV(gene name synonym)|uniprotkb:JW3903(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341491|imex:IM-22256-1377 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_418367.1|refseq:WP_000208242.1|dip:DIP-35866N|ensemblbacteria:AAC76914(transcript)|ensemblbacteria:b3932(gene)|ensemblbacteria:BAE77378(gene)|ensemblbacteria:BAE77378(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004298"(threonine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0005839"(proteasome core complex)|go:"GO:0006508"(proteolysis)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0009408"(response to heat)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0042802"(identical protein binding)|go:"GO:0051603"(proteolysis involved in cellular protein catabolic process)|interpro:IPR001353(20S proteasome, A and B subunits)|interpro:IPR022281|interpro:IPR023333|interpro:IPR029055|rcsb pdb:1E94|rcsb pdb:1G4A|rcsb pdb:1G4B|rcsb pdb:1HQY|rcsb pdb:1HT1|rcsb pdb:1HT2|rcsb pdb:1NED|rcsb pdb:4G4E|rcsb pdb:5JI3|rcsb pdb:6PXI|uniprotkb:P0A7B8(identity) refseq:NP_418367.1|refseq:WP_000208242.1|dip:DIP-35866N|ensemblbacteria:AAC76914(transcript)|ensemblbacteria:b3932(gene)|ensemblbacteria:BAE77378(gene)|ensemblbacteria:BAE77378(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0004298"(threonine-type endopeptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0005839"(proteasome core complex)|go:"GO:0006508"(proteolysis)|go:"GO:0009376"(HslUV protease complex)|go:"GO:0009408"(response to heat)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0042802"(identical protein binding)|go:"GO:0051603"(proteolysis involved in cellular protein catabolic process)|interpro:IPR001353(20S proteasome, A and B subunits)|interpro:IPR022281|interpro:IPR023333|interpro:IPR029055|rcsb pdb:1E94|rcsb pdb:1G4A|rcsb pdb:1G4B|rcsb pdb:1HQY|rcsb pdb:1HT1|rcsb pdb:1HT2|rcsb pdb:1NED|rcsb pdb:4G4E|rcsb pdb:5JI3|rcsb pdb:6PXI|uniprotkb:P0A7B8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:8q8Ps3ek2qLLuIwtux7TR7EQ70g83333 rogid:8q8Ps3ek2qLLuIwtux7TR7EQ70g83333 intact-crc:E66BF56F08E1F4F8|rigid:MWXS7L0Wtdobs/0ttHpF/lTUwBk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A7J0 uniprotkb:P0A7J0 intact:EBI-553653|uniprotkb:P24199|uniprotkb:Q2M9F9|ensemblbacteria:AAC76077|ensemblbacteria:BAE77097 intact:EBI-553653|uniprotkb:P24199|uniprotkb:Q2M9F9|ensemblbacteria:AAC76077|ensemblbacteria:BAE77097 psi-mi:ribb_ecoli(display_long)|uniprotkb:ribB(gene name)|psi-mi:ribB(display_short)|uniprotkb:htrP(gene name synonym)|uniprotkb:b3041(locus name)|uniprotkb:JW3009(locus name) psi-mi:ribb_ecoli(display_long)|uniprotkb:ribB(gene name)|psi-mi:ribB(display_short)|uniprotkb:htrP(gene name synonym)|uniprotkb:b3041(locus name)|uniprotkb:JW3009(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341508|imex:IM-22256-1378 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417513.1|refseq:WP_001076997.1|dip:DIP-35934N|ensemblbacteria:AAC76077(transcript)|ensemblbacteria:b3041(gene)|ensemblbacteria:BAE77097(gene)|ensemblbacteria:BAE77097(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0008686"(3,4-dihydroxy-2-butanone-4-phosphate synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0030145"(manganese ion binding)|go:"GO:0042802"(identical protein binding)|interpro:IPR000422(3,4-Dihydroxy-2-butanone 4-phosphate synthase)|interpro:IPR017945|rcsb pdb:1G57|rcsb pdb:1G58|rcsb pdb:1IEZ|uniprotkb:P0A7J0(identity) refseq:NP_417513.1|refseq:WP_001076997.1|dip:DIP-35934N|ensemblbacteria:AAC76077(transcript)|ensemblbacteria:b3041(gene)|ensemblbacteria:BAE77097(gene)|ensemblbacteria:BAE77097(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0008686"(3,4-dihydroxy-2-butanone-4-phosphate synthase activity)|go:"GO:0009231"(riboflavin biosynthetic process)|go:"GO:0030145"(manganese ion binding)|go:"GO:0042802"(identical protein binding)|interpro:IPR000422(3,4-Dihydroxy-2-butanone 4-phosphate synthase)|interpro:IPR017945|rcsb pdb:1G57|rcsb pdb:1G58|rcsb pdb:1IEZ|uniprotkb:P0A7J0(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:JnF07jJZMJS4H+L/dRlafFM2fTg83333 rogid:JnF07jJZMJS4H+L/dRlafFM2fTg83333 intact-crc:9F1253BC0565060D|rigid:Y7vmfOLMgcr/wh2doHkS/4hr6t8 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A8A8 uniprotkb:P0A7S3 intact:EBI-561065|uniprotkb:P03843|uniprotkb:Q2M940|uniprotkb:Q8X9M1|ensemblbacteria:AAC76204|ensemblbacteria:BAE77216 intact:EBI-543960|uniprotkb:P02367|uniprotkb:Q2M707|uniprotkb:Q9F5N3|ensemblbacteria:BAE77949|ensemblbacteria:AAC76367 psi-mi:rimp_ecoli(display_long)|uniprotkb:yhbC(gene name synonym)|uniprotkb:rimP(gene name)|psi-mi:rimP(display_short)|uniprotkb:b3170(locus name)|uniprotkb:JW5533(locus name) psi-mi:rs12_ecoli(display_long)|uniprotkb:rpsL(gene name)|psi-mi:rpsL(display_short)|uniprotkb:strA(gene name synonym)|uniprotkb:b3342(locus name)|uniprotkb:JW3304(locus name)|uniprotkb:Small ribosomal subunit protein uS12(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341525|imex:IM-22256-1379 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417639.6|refseq:WP_001300397.1|dip:DIP-47892N|ensemblbacteria:AAC76204(transcript)|ensemblbacteria:b3170(gene)|ensemblbacteria:BAE77216(gene)|ensemblbacteria:BAE77216(transcript)|go:"GO:0000028"(ribosomal small subunit assembly)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0042274"(ribosomal small subunit biogenesis)|interpro:IPR003728(Protein of unknown function DUF150)|interpro:IPR028989|interpro:IPR028998|interpro:IPR035956|interpro:IPR036847|uniprotkb:P0A8A8(identity) refseq:NP_417801.1|refseq:WP_000246815.1|ensemblbacteria:b3342(gene)|ensemblbacteria:BAE77949(gene)|ensemblbacteria:BAE77949(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0000372"(Group I intron splicing)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0033120"(positive regulation of RNA splicing)|go:"GO:0034336"(misfolded RNA binding)|go:"GO:0034337"(RNA folding)|go:"GO:0046677"(response to antibiotic)|go:"GO:1990145"(maintenance of translational fidelity)|interpro:IPR005679(Ribosomal protein S12, bacterial-type)|interpro:IPR006032(Ribosomal protein S12/S23)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|rcsb pdb:1M5G|rcsb pdb:1MJ1|rcsb pdb:1ZN1|rcsb pdb:2YKR|rcsb pdb:3DEG|rcsb pdb:3EP2|rcsb pdb:3EQ3|rcsb pdb:3EQ4|rcsb pdb:3J0D|rcsb pdb:3J0E|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V6Y|ensemblbacteria:AAC76367(transcript)|dip:DIP-35806N|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5KPV|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U4J|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|rcsb pdb:5UYQ|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:5NO4|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V6Z|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:4V9P|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6W7N|rcsb pdb:6W7W|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XE0|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6GXM|rcsb pdb:6Y69|rcsb pdb:6ZTL|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|uniprotkb:P0A7S3(identity) psi-mi:"MI:0469"(intact) crc64:FFEC71975B4492AB - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:EYZSHQ967GSN68yA7PcBg3Ejz8083333 rogid:NlwInYGNP7HI/UJqxHkuALtGVZo83333 intact-crc:46D24968735CA16D|rigid:S/ZSHIqGeBAJ+Y9uvzeURv4/aBk false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P02358 uniprotkb:P0A7T7 intact:EBI-543068|uniprotkb:Q2M6A5|ensemblbacteria:AAC77157|ensemblbacteria:BAE78201 intact:EBI-548844|ensemblbacteria:AAC77159|ensemblbacteria:BAE78203|uniprotkb:P02374|uniprotkb:Q2M6A3 psi-mi:rs6_ecoli(display_long)|uniprotkb:rpsF(gene name)|psi-mi:rpsF(display_short)|uniprotkb:Small ribosomal subunit protein bS6(gene name synonym)|uniprotkb:JW4158(locus name)|uniprotkb:b4200(locus name) psi-mi:rs18_ecoli(display_long)|uniprotkb:rpsR(gene name)|psi-mi:rpsR(display_short)|uniprotkb:Small ribosomal subunit protein bS18(gene name synonym)|uniprotkb:JW4160(locus name)|uniprotkb:b4202(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341542|imex:IM-22256-1380 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAC77157(transcript)|ensemblbacteria:b4200(gene)|ensemblbacteria:BAE78201(gene)|ensemblbacteria:BAE78201(transcript)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|interpro:IPR000529(Ribosomal protein S6)|interpro:IPR014717(Translation elongation factor EF1B/ribosomal protein S6)|interpro:IPR020814|interpro:IPR020815|interpro:IPR035980|rcsb pdb:1EG0|rcsb pdb:1M5G|rcsb pdb:2YKR|rcsb pdb:3IY8|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4V70|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5KPS|rcsb pdb:5UYL|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NO4|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|rcsb pdb:5UYQ|rcsb pdb:5UZ4|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6DNC|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6NQB|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6OM6|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6VYQ|rcsb pdb:6VYR|rcsb pdb:6VYS|rcsb pdb:6VYT|rcsb pdb:6VYU|rcsb pdb:6VYX|rcsb pdb:6VYY|rcsb pdb:6VYZ|rcsb pdb:6VZ2|rcsb pdb:6VZ5|rcsb pdb:6VZJ|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6W7W|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6X6T|rcsb pdb:6X7F|rcsb pdb:6X7K|rcsb pdb:6X9Q|rcsb pdb:6XDQ|rcsb pdb:6XDR|rcsb pdb:6XE0|rcsb pdb:6XGF|rcsb pdb:6XII|rcsb pdb:6XIJ|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6Y69|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|rcsb pdb:7K00|rcsb pdb:7O5H|refseq:NP_418621.5|dip:DIP-10782N|uniprotkb:P02358(identity) ensemblbacteria:AAC77159(transcript)|ensemblbacteria:b4202(gene)|ensemblbacteria:BAE78203(gene)|ensemblbacteria:BAE78203(transcript)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|interpro:IPR001648(Ribosomal protein S18)|interpro:IPR018275|interpro:IPR036870|rcsb pdb:1M5G|rcsb pdb:2YKR|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|refseq:NP_418623.1|refseq:WP_000135199.1|dip:DIP-47889N|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XE0|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6Y69|rcsb pdb:6ZTL|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:5UYQ|rcsb pdb:6OG7|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:4V6V|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5J8A|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NO4|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|uniprotkb:P0A7T7(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Ab2SA6wPqg/mJKUOBPK+GNJc20k83333 rogid:7nbSyTfLqHeIzIsihhkoEgEoqgc83333 intact-crc:7AE3F4FEBAA82992|rigid:LomUjC00WkkQ7sACJx0RxYcxicI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A858 uniprotkb:P0A858 intact:EBI-368978|uniprotkb:P04790|uniprotkb:Q2M8L5|ensemblbacteria:AAC76901|ensemblbacteria:BAE77391 intact:EBI-368978|uniprotkb:P04790|uniprotkb:Q2M8L5|ensemblbacteria:AAC76901|ensemblbacteria:BAE77391 psi-mi:tpis_ecoli(display_long)|uniprotkb:tpiA(gene name)|psi-mi:tpiA(display_short)|uniprotkb:tpi(gene name synonym)|uniprotkb:b3919(locus name)|uniprotkb:JW3890(locus name)|uniprotkb:Triose-phosphate isomerase(gene name synonym) psi-mi:tpis_ecoli(display_long)|uniprotkb:tpiA(gene name)|psi-mi:tpiA(display_short)|uniprotkb:tpi(gene name synonym)|uniprotkb:b3919(locus name)|uniprotkb:JW3890(locus name)|uniprotkb:Triose-phosphate isomerase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341559|imex:IM-22256-1381 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001216325.1|refseq:NP_418354.1|ensemblbacteria:AAC76901(transcript)|ensemblbacteria:b3919(gene)|ensemblbacteria:BAE77391(gene)|ensemblbacteria:BAE77391(transcript)|go:"GO:0004807"(triose-phosphate isomerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0016020"(membrane)|go:"GO:0019563"(glycerol catabolic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046166"(glyceraldehyde-3-phosphate biosynthetic process)|interpro:IPR000652(Triosephosphate isomerase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020861|interpro:IPR022896|interpro:IPR035990|rcsb pdb:1TMH|rcsb pdb:1TRE|dip:DIP-31849N|uniprotkb:P0A858(identity) refseq:WP_001216325.1|refseq:NP_418354.1|ensemblbacteria:AAC76901(transcript)|ensemblbacteria:b3919(gene)|ensemblbacteria:BAE77391(gene)|ensemblbacteria:BAE77391(transcript)|go:"GO:0004807"(triose-phosphate isomerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0016020"(membrane)|go:"GO:0019563"(glycerol catabolic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046166"(glyceraldehyde-3-phosphate biosynthetic process)|interpro:IPR000652(Triosephosphate isomerase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020861|interpro:IPR022896|interpro:IPR035990|rcsb pdb:1TMH|rcsb pdb:1TRE|dip:DIP-31849N|uniprotkb:P0A858(identity) psi-mi:"MI:0469"(intact) crc64:E398251020012D94 crc64:E398251020012D94 figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ROHSCnYvM5DH+Tm9MnhUXkXWKbQ83333 rogid:ROHSCnYvM5DH+Tm9MnhUXkXWKbQ83333 intact-crc:746B11C582D58D22|rigid:uqKHJHSU2SKPVhcpil/Ai5qzEI8 false dna binding domain tag:c-c("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A858 uniprotkb:P0A858 intact:EBI-368978|uniprotkb:P04790|uniprotkb:Q2M8L5|ensemblbacteria:AAC76901|ensemblbacteria:BAE77391 intact:EBI-368978|uniprotkb:P04790|uniprotkb:Q2M8L5|ensemblbacteria:AAC76901|ensemblbacteria:BAE77391 psi-mi:tpis_ecoli(display_long)|uniprotkb:tpiA(gene name)|psi-mi:tpiA(display_short)|uniprotkb:tpi(gene name synonym)|uniprotkb:b3919(locus name)|uniprotkb:JW3890(locus name)|uniprotkb:Triose-phosphate isomerase(gene name synonym) psi-mi:tpis_ecoli(display_long)|uniprotkb:tpiA(gene name)|psi-mi:tpiA(display_short)|uniprotkb:tpi(gene name synonym)|uniprotkb:b3919(locus name)|uniprotkb:JW3890(locus name)|uniprotkb:Triose-phosphate isomerase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341576|imex:IM-22256-1382 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001216325.1|refseq:NP_418354.1|ensemblbacteria:AAC76901(transcript)|ensemblbacteria:b3919(gene)|ensemblbacteria:BAE77391(gene)|ensemblbacteria:BAE77391(transcript)|go:"GO:0004807"(triose-phosphate isomerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0016020"(membrane)|go:"GO:0019563"(glycerol catabolic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046166"(glyceraldehyde-3-phosphate biosynthetic process)|interpro:IPR000652(Triosephosphate isomerase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020861|interpro:IPR022896|interpro:IPR035990|rcsb pdb:1TMH|rcsb pdb:1TRE|dip:DIP-31849N|uniprotkb:P0A858(identity) refseq:WP_001216325.1|refseq:NP_418354.1|ensemblbacteria:AAC76901(transcript)|ensemblbacteria:b3919(gene)|ensemblbacteria:BAE77391(gene)|ensemblbacteria:BAE77391(transcript)|go:"GO:0004807"(triose-phosphate isomerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006094"(gluconeogenesis)|go:"GO:0006096"(glycolytic process)|go:"GO:0016020"(membrane)|go:"GO:0019563"(glycerol catabolic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046166"(glyceraldehyde-3-phosphate biosynthetic process)|interpro:IPR000652(Triosephosphate isomerase)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR020861|interpro:IPR022896|interpro:IPR035990|rcsb pdb:1TMH|rcsb pdb:1TRE|dip:DIP-31849N|uniprotkb:P0A858(identity) psi-mi:"MI:0469"(intact) crc64:E398251020012D94 crc64:E398251020012D94 figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ROHSCnYvM5DH+Tm9MnhUXkXWKbQ83333 rogid:ROHSCnYvM5DH+Tm9MnhUXkXWKbQ83333 intact-crc:480A29F284EAEBD9|rigid:uqKHJHSU2SKPVhcpil/Ai5qzEI8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A877 uniprotkb:P0A879 intact:EBI-1120833|uniprotkb:P00928|uniprotkb:Q47669|ensemblbacteria:AAC74342|ensemblbacteria:BAA14792 intact:EBI-1123130|uniprotkb:P00932|uniprotkb:P78146|ensemblbacteria:AAC74343|ensemblbacteria:BAA14793 psi-mi:trpa_ecoli(display_long)|uniprotkb:trpA(gene name)|psi-mi:trpA(display_short)|uniprotkb:b1260(locus name)|uniprotkb:JW1252(locus name) psi-mi:trpb_ecoli(display_long)|uniprotkb:trpB(gene name)|psi-mi:trpB(display_short)|uniprotkb:b1261(locus name)|uniprotkb:JW1253(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341593|imex:IM-22256-1383 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000443067.1|ensemblbacteria:AAC74342(transcript)|ensemblbacteria:b1260(gene)|ensemblbacteria:BAA14792(gene)|ensemblbacteria:BAA14792(transcript)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004834"(tryptophan synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0016829"(lyase activity)|interpro:IPR002028(Tryptophan synthase, alpha chain)|interpro:IPR011060(Ribulose-phosphate binding barrel)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR018204|rcsb pdb:1V7Y|rcsb pdb:1WQ5|rcsb pdb:1XC4|rcsb pdb:1XCF|refseq:NP_415776.1|dip:DIP-35957N|uniprotkb:P0A877(identity) refseq:WP_000209520.1|ensemblbacteria:AAC74343(transcript)|ensemblbacteria:b1261(gene)|ensemblbacteria:BAA14793(gene)|ensemblbacteria:BAA14793(transcript)|go:"GO:0000162"(tryptophan biosynthetic process)|go:"GO:0004834"(tryptophan synthase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0009073"(aromatic amino acid family biosynthetic process)|go:"GO:0030170"(pyridoxal phosphate binding)|go:"GO:0042802"(identical protein binding)|interpro:IPR001926(Pyridoxal phosphate-dependent enzyme, beta subunit)|interpro:IPR006653(Tryptophan synthase, beta chain, conserved site)|interpro:IPR006654(Tryptophan synthase, beta chain)|interpro:IPR023026|interpro:IPR036052|rcsb pdb:2DH5|rcsb pdb:2DH6|refseq:NP_415777.1|dip:DIP-1036N|uniprotkb:P0A879(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5U5eYXLakG0nZwrJWD2sZ9YHCwo83333 rogid:vvAPJuDBGeKPaLlmHqYZO5TzSK883333 intact-crc:238BCC064B850780|rigid:pXfvMxRAKcnExhARQXk0xJSwMaE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A7R9 uniprotkb:P0A898 intact:EBI-548800|uniprotkb:P02366|uniprotkb:Q2M6W2|ensemblbacteria:AAC76322|ensemblbacteria:BAE77994 intact:EBI-560240|uniprotkb:P77385|ensemblbacteria:AAC73760|ensemblbacteria:BAA35314 psi-mi:rs11_ecoli(display_long)|uniprotkb:rpsK(gene name)|psi-mi:rpsK(display_short)|uniprotkb:Small ribosomal subunit protein uS11(gene name synonym)|uniprotkb:JW3259(locus name)|uniprotkb:b3297(locus name) psi-mi:ybey_ecoli(display_long)|uniprotkb:ybeY(gene name)|psi-mi:ybeY(display_short)|uniprotkb:b0659(locus name)|uniprotkb:JW0656(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341610|imex:IM-22256-1384 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417756.1|refseq:WP_001029684.1|dip:DIP-47838N|rcsb pdb:6Y69|rcsb pdb:6ZTL|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|rcsb pdb:6XZB|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:4V66|ensemblbacteria:AAC76322(transcript)|ensemblbacteria:b3297(gene)|ensemblbacteria:BAE77994(gene)|ensemblbacteria:BAE77994(transcript)|go:"GO:0000028"(ribosomal small subunit assembly)|go:"GO:0000462"("maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0048027"(mRNA 5'-UTR binding)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|interpro:IPR001971(Ribosomal protein S11)|interpro:IPR018102|interpro:IPR019981|interpro:IPR036967|rcsb pdb:1M5G|rcsb pdb:2YKR|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NO4|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|rcsb pdb:5UYQ|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6O7K|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OSK|rcsb pdb:6OSQ|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:5IT8|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VU3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6VZ3|rcsb pdb:6VZ5|rcsb pdb:6VZ7|rcsb pdb:6VZJ|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XE0|rcsb pdb:6XZA|uniprotkb:P0A7R9(identity) refseq:NP_415192.1|refseq:WP_000084469.1|dip:DIP-48144N|ensemblbacteria:AAC73760(transcript)|ensemblbacteria:b0659(gene)|ensemblbacteria:BAA35314(gene)|ensemblbacteria:BAA35314(transcript)|go:"GO:0000478"(endonucleolytic cleavage involved in rRNA processing)|go:"GO:0004222"(metalloendopeptidase activity)|go:"GO:0005737"(cytoplasm)|go:"GO:0006364"(rRNA processing)|go:"GO:0006412"(translation)|go:"GO:0008270"(zinc ion binding)|go:"GO:0009408"(response to heat)|go:"GO:0016151"(nickel cation binding)|go:"GO:0016892"(endoribonuclease activity, producing 3'-phosphomonoesters)|go:"GO:0030490"(maturation of SSU-rRNA)|go:"GO:0031564"(transcription antitermination)|go:"GO:0042254"(ribosome biogenesis)|go:"GO:0042274"(ribosomal small subunit biogenesis)|interpro:IPR002036(Protein of unknown function UPF0054)|interpro:IPR020549|interpro:IPR023091|rcsb pdb:1XM5|uniprotkb:P0A898(identity) psi-mi:"MI:0469"(intact) - caution:This sequence has been withdrawn from Uniprot. figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:8tlfp8p62+nKKYjgksTkOJl/G/s83333 rogid:zAHIkx9YvUjc2kFAphVoa/eDPMQ83333 intact-crc:7BC45CA2728F6B18|rigid:nMa52gJJQBAXLYtzIrHE9aIheU4 false activation domain tag:n-n("MI:0689") dna binding domain tag:c-c("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A8A0 uniprotkb:P0A7K6 intact:EBI-560730|uniprotkb:P24237|ensemblbacteria:AAC74934|ensemblbacteria:BAA15675 intact:EBI-543891|uniprotkb:P02420|ensemblbacteria:AAC75655|ensemblbacteria:BAA16491 psi-mi:yebc_ecoli(display_long)|uniprotkb:yebC(gene name)|psi-mi:yebC(display_short)|uniprotkb:b1864(locus name)|uniprotkb:JW1853(locus name) psi-mi:rl19_ecoli(display_long)|uniprotkb:rplS(gene name)|psi-mi:rplS(display_short)|uniprotkb:Large ribosomal subunit protein bL19(gene name synonym)|uniprotkb:JW2587(locus name)|uniprotkb:b2606(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341627|imex:IM-22256-1385 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416378.1|refseq:WP_000907248.1|dip:DIP-47886N|ensemblbacteria:AAC74934(transcript)|ensemblbacteria:b1864(gene)|ensemblbacteria:BAA15675(gene)|ensemblbacteria:BAA15675(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0010212"(response to ionizing radiation)|interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026564|interpro:IPR029072|rcsb pdb:1KON|uniprotkb:P0A8A0(identity) refseq:NP_417097.1|refseq:WP_000065253.1|ensemblbacteria:AAC75655(transcript)|ensemblbacteria:b2606(gene)|ensemblbacteria:BAA16491(gene)|ensemblbacteria:BAA16491(transcript)|go:"GO:0000027"(ribosomal large subunit assembly)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0070180"(large ribosomal subunit rRNA binding)|interpro:IPR001857(Ribosomal protein L19)|interpro:IPR008991(Translation protein SH3-like)|interpro:IPR018257|interpro:IPR038657|rcsb pdb:2J28|rcsb pdb:2RDO|rcsb pdb:3BBX|rcsb pdb:3J5L|rcsb pdb:3J7Z|rcsb pdb:3J8G|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4CSU|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4UY8|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5ADY|rcsb pdb:5AFI|rcsb pdb:5AKA|rcsb pdb:5GAD|rcsb pdb:5GAE|rcsb pdb:5GAF|rcsb pdb:5GAG|rcsb pdb:5GAH|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5MGP|rcsb pdb:5NCO|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:4WF1|rcsb pdb:5UYQ|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GBZ|rcsb pdb:6GC0|rcsb pdb:6GC4|rcsb pdb:6GC6|rcsb pdb:6GC7|rcsb pdb:6GC8|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I0Y|rcsb pdb:6I7V|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6QDW|rcsb pdb:6QUL|rcsb pdb:6S0K|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:5UYP|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNT|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XZ7|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6Y69|rcsb pdb:6YS3|rcsb pdb:6YSR|rcsb pdb:6YSS|rcsb pdb:6YST|rcsb pdb:6YSU|rcsb pdb:6ZTJ|rcsb pdb:6ZTL|rcsb pdb:6ZTM|rcsb pdb:6ZTN|rcsb pdb:6ZTO|rcsb pdb:6ZTP|rcsb pdb:6ZU1|rcsb pdb:7B5K|rcsb pdb:7BL2|rcsb pdb:7BL3|rcsb pdb:7BL4|rcsb pdb:7BL5|rcsb pdb:7BL6|rcsb pdb:7BV8|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|dip:DIP-35793N|uniprotkb:P0A7K6(identity) psi-mi:"MI:0469"(intact) crc64:F02F71E7DAF39C18 - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:XnJ62ck2u80DHsK5bxYLhIrLcUQ83333 rogid:eh/A+4OlNUQ3u5BNgloaHhvsA2w83333 intact-crc:95AE8B3474FBC8E3|rigid:04INnShSJzlffdwEtAvp/oYjG50 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A8A8 uniprotkb:P0A7S3 intact:EBI-561065|uniprotkb:P03843|uniprotkb:Q2M940|uniprotkb:Q8X9M1|ensemblbacteria:AAC76204|ensemblbacteria:BAE77216 intact:EBI-543960|uniprotkb:P02367|uniprotkb:Q2M707|uniprotkb:Q9F5N3|ensemblbacteria:BAE77949|ensemblbacteria:AAC76367 psi-mi:rimp_ecoli(display_long)|uniprotkb:yhbC(gene name synonym)|uniprotkb:rimP(gene name)|psi-mi:rimP(display_short)|uniprotkb:b3170(locus name)|uniprotkb:JW5533(locus name) psi-mi:rs12_ecoli(display_long)|uniprotkb:rpsL(gene name)|psi-mi:rpsL(display_short)|uniprotkb:strA(gene name synonym)|uniprotkb:b3342(locus name)|uniprotkb:JW3304(locus name)|uniprotkb:Small ribosomal subunit protein uS12(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341644|imex:IM-22256-1386 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417639.6|refseq:WP_001300397.1|dip:DIP-47892N|ensemblbacteria:AAC76204(transcript)|ensemblbacteria:b3170(gene)|ensemblbacteria:BAE77216(gene)|ensemblbacteria:BAE77216(transcript)|go:"GO:0000028"(ribosomal small subunit assembly)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0042274"(ribosomal small subunit biogenesis)|interpro:IPR003728(Protein of unknown function DUF150)|interpro:IPR028989|interpro:IPR028998|interpro:IPR035956|interpro:IPR036847|uniprotkb:P0A8A8(identity) refseq:NP_417801.1|refseq:WP_000246815.1|ensemblbacteria:b3342(gene)|ensemblbacteria:BAE77949(gene)|ensemblbacteria:BAE77949(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0000372"(Group I intron splicing)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0033120"(positive regulation of RNA splicing)|go:"GO:0034336"(misfolded RNA binding)|go:"GO:0034337"(RNA folding)|go:"GO:0046677"(response to antibiotic)|go:"GO:1990145"(maintenance of translational fidelity)|interpro:IPR005679(Ribosomal protein S12, bacterial-type)|interpro:IPR006032(Ribosomal protein S12/S23)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|rcsb pdb:1M5G|rcsb pdb:1MJ1|rcsb pdb:1ZN1|rcsb pdb:2YKR|rcsb pdb:3DEG|rcsb pdb:3EP2|rcsb pdb:3EQ3|rcsb pdb:3EQ4|rcsb pdb:3J0D|rcsb pdb:3J0E|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V6Y|ensemblbacteria:AAC76367(transcript)|dip:DIP-35806N|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5KPV|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U4J|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|rcsb pdb:5UYQ|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:5NO4|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V6Z|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:4V9P|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6W7N|rcsb pdb:6W7W|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XE0|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6GXM|rcsb pdb:6Y69|rcsb pdb:6ZTL|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|uniprotkb:P0A7S3(identity) psi-mi:"MI:0469"(intact) crc64:FFEC71975B4492AB - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:EYZSHQ967GSN68yA7PcBg3Ejz8083333 rogid:NlwInYGNP7HI/UJqxHkuALtGVZo83333 intact-crc:98DE8F6864E3712E|rigid:S/ZSHIqGeBAJ+Y9uvzeURv4/aBk false dna binding domain tag:c-c("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A8A8 uniprotkb:P0A7S3 intact:EBI-561065|uniprotkb:P03843|uniprotkb:Q2M940|uniprotkb:Q8X9M1|ensemblbacteria:AAC76204|ensemblbacteria:BAE77216 intact:EBI-543960|uniprotkb:P02367|uniprotkb:Q2M707|uniprotkb:Q9F5N3|ensemblbacteria:BAE77949|ensemblbacteria:AAC76367 psi-mi:rimp_ecoli(display_long)|uniprotkb:yhbC(gene name synonym)|uniprotkb:rimP(gene name)|psi-mi:rimP(display_short)|uniprotkb:b3170(locus name)|uniprotkb:JW5533(locus name) psi-mi:rs12_ecoli(display_long)|uniprotkb:rpsL(gene name)|psi-mi:rpsL(display_short)|uniprotkb:strA(gene name synonym)|uniprotkb:b3342(locus name)|uniprotkb:JW3304(locus name)|uniprotkb:Small ribosomal subunit protein uS12(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341661|imex:IM-22256-1387 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417639.6|refseq:WP_001300397.1|dip:DIP-47892N|ensemblbacteria:AAC76204(transcript)|ensemblbacteria:b3170(gene)|ensemblbacteria:BAE77216(gene)|ensemblbacteria:BAE77216(transcript)|go:"GO:0000028"(ribosomal small subunit assembly)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0042274"(ribosomal small subunit biogenesis)|interpro:IPR003728(Protein of unknown function DUF150)|interpro:IPR028989|interpro:IPR028998|interpro:IPR035956|interpro:IPR036847|uniprotkb:P0A8A8(identity) refseq:NP_417801.1|refseq:WP_000246815.1|ensemblbacteria:b3342(gene)|ensemblbacteria:BAE77949(gene)|ensemblbacteria:BAE77949(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0000372"(Group I intron splicing)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0005840"(ribosome)|go:"GO:0006412"(translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0033120"(positive regulation of RNA splicing)|go:"GO:0034336"(misfolded RNA binding)|go:"GO:0034337"(RNA folding)|go:"GO:0046677"(response to antibiotic)|go:"GO:1990145"(maintenance of translational fidelity)|interpro:IPR005679(Ribosomal protein S12, bacterial-type)|interpro:IPR006032(Ribosomal protein S12/S23)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|rcsb pdb:1M5G|rcsb pdb:1MJ1|rcsb pdb:1ZN1|rcsb pdb:2YKR|rcsb pdb:3DEG|rcsb pdb:3EP2|rcsb pdb:3EQ3|rcsb pdb:3EQ4|rcsb pdb:3J0D|rcsb pdb:3J0E|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|rcsb pdb:4V6K|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V6Y|ensemblbacteria:AAC76367(transcript)|dip:DIP-35806N|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5KPV|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U4J|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|rcsb pdb:5UYQ|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:5NO4|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V6Z|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4WF1|rcsb pdb:4WOI|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:4V9P|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6I7V|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6W7N|rcsb pdb:6W7W|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XE0|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6GXM|rcsb pdb:6Y69|rcsb pdb:6ZTL|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|uniprotkb:P0A7S3(identity) psi-mi:"MI:0469"(intact) crc64:FFEC71975B4492AB - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:EYZSHQ967GSN68yA7PcBg3Ejz8083333 rogid:NlwInYGNP7HI/UJqxHkuALtGVZo83333 intact-crc:FED27EC0E88023BF|rigid:S/ZSHIqGeBAJ+Y9uvzeURv4/aBk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0ABH9 uniprotkb:P0A8Q6 intact:EBI-546140|uniprotkb:P15716|uniprotkb:P77686|ensemblbacteria:AAC73969|ensemblbacteria:BAA35601 intact:EBI-561456|uniprotkb:P75832|ensemblbacteria:AAC73968|ensemblbacteria:BAA35600 psi-mi:clpa_ecoli(display_long)|uniprotkb:clpA(gene name)|psi-mi:clpA(display_short)|uniprotkb:lopD(gene name synonym)|uniprotkb:b0882(locus name)|uniprotkb:JW0866(locus name) psi-mi:clps_ecoli(display_long)|uniprotkb:yljA(gene name synonym)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:b0881(locus name)|uniprotkb:JW0865(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341678|imex:IM-22256-1388 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:1MBX|rcsb pdb:1MG9|rcsb pdb:1R6B|rcsb pdb:1R6C|rcsb pdb:1R6O|rcsb pdb:1R6Q|rcsb pdb:5OFO|rcsb pdb:5OG1|rcsb pdb:6UQE|rcsb pdb:6UQO|rcsb pdb:6W1Z|rcsb pdb:6W20|rcsb pdb:6W21|rcsb pdb:6W22|rcsb pdb:6W23|rcsb pdb:6W24|ensemblbacteria:AAC73969(transcript)|ensemblbacteria:b0882(gene)|ensemblbacteria:BAA35601(gene)|ensemblbacteria:BAA35601(transcript)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0034605"(cellular response to heat)|go:"GO:0043335"(protein unfolding)|interpro:IPR001270(Chaperonin clpA/B)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004176(Clp, N-terminal)|interpro:IPR013461(ATP-dependent Clp protease ATP-binding subunit clpA)|interpro:IPR018368|interpro:IPR019489|interpro:IPR027417|interpro:IPR028299|interpro:IPR036628|interpro:IPR041546|rcsb pdb:1K6K|rcsb pdb:1KSF|rcsb pdb:1LZW|rcsb pdb:1MBU|rcsb pdb:1MBV|refseq:NP_415403.1|refseq:WP_000934041.1|dip:DIP-35409N|uniprotkb:P0ABH9(identity) refseq:NP_415402.1|refseq:WP_000520781.1|dip:DIP-35408N|mint:P0A8Q6|ensemblbacteria:AAC73968(transcript)|ensemblbacteria:b0881(gene)|ensemblbacteria:BAA35600(gene)|ensemblbacteria:BAA35600(transcript)|go:"GO:0006508"(proteolysis)|go:"GO:0009408"(response to heat)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051087"(chaperone binding)|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|rcsb pdb:1LZW|rcsb pdb:1MBU|rcsb pdb:1MBV|rcsb pdb:1MBX|rcsb pdb:1MG9|rcsb pdb:1R6O|rcsb pdb:1R6Q|rcsb pdb:2W9R|rcsb pdb:2WA8|rcsb pdb:2WA9|rcsb pdb:3O1F|rcsb pdb:3O2B|rcsb pdb:3O2H|rcsb pdb:3O2O|uniprotkb:P0A8Q6(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qgKZjSma6WZIUf0i16Rt+DvXVsM83333 rogid:E6ZDB3O/BMcHBqwmbLydi41cTWo83333 intact-crc:829E8DA61F7E646A|rigid:T/DcDZu00FCHnnoj4Ui/DexJxNw false activation domain tag:n-n("MI:0689") dna binding domain tag:c-c("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0ABH9 uniprotkb:P0A8Q6 intact:EBI-546140|uniprotkb:P15716|uniprotkb:P77686|ensemblbacteria:AAC73969|ensemblbacteria:BAA35601 intact:EBI-561456|uniprotkb:P75832|ensemblbacteria:AAC73968|ensemblbacteria:BAA35600 psi-mi:clpa_ecoli(display_long)|uniprotkb:clpA(gene name)|psi-mi:clpA(display_short)|uniprotkb:lopD(gene name synonym)|uniprotkb:b0882(locus name)|uniprotkb:JW0866(locus name) psi-mi:clps_ecoli(display_long)|uniprotkb:yljA(gene name synonym)|uniprotkb:clpS(gene name)|psi-mi:clpS(display_short)|uniprotkb:b0881(locus name)|uniprotkb:JW0865(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341695|imex:IM-22256-1389 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) rcsb pdb:1MBX|rcsb pdb:1MG9|rcsb pdb:1R6B|rcsb pdb:1R6C|rcsb pdb:1R6O|rcsb pdb:1R6Q|rcsb pdb:5OFO|rcsb pdb:5OG1|rcsb pdb:6UQE|rcsb pdb:6UQO|rcsb pdb:6W1Z|rcsb pdb:6W20|rcsb pdb:6W21|rcsb pdb:6W22|rcsb pdb:6W23|rcsb pdb:6W24|ensemblbacteria:AAC73969(transcript)|ensemblbacteria:b0882(gene)|ensemblbacteria:BAA35601(gene)|ensemblbacteria:BAA35601(transcript)|go:"GO:0004176"(ATP-dependent peptidase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0034605"(cellular response to heat)|go:"GO:0043335"(protein unfolding)|interpro:IPR001270(Chaperonin clpA/B)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR004176(Clp, N-terminal)|interpro:IPR013461(ATP-dependent Clp protease ATP-binding subunit clpA)|interpro:IPR018368|interpro:IPR019489|interpro:IPR027417|interpro:IPR028299|interpro:IPR036628|interpro:IPR041546|rcsb pdb:1K6K|rcsb pdb:1KSF|rcsb pdb:1LZW|rcsb pdb:1MBU|rcsb pdb:1MBV|refseq:NP_415403.1|refseq:WP_000934041.1|dip:DIP-35409N|uniprotkb:P0ABH9(identity) refseq:NP_415402.1|refseq:WP_000520781.1|dip:DIP-35408N|mint:P0A8Q6|ensemblbacteria:AAC73968(transcript)|ensemblbacteria:b0881(gene)|ensemblbacteria:BAA35600(gene)|ensemblbacteria:BAA35600(transcript)|go:"GO:0006508"(proteolysis)|go:"GO:0009408"(response to heat)|go:"GO:0030163"(protein catabolic process)|go:"GO:0051087"(chaperone binding)|interpro:IPR003769(Adaptor protein ClpS, core)|interpro:IPR014719(Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)|interpro:IPR022935|rcsb pdb:1LZW|rcsb pdb:1MBU|rcsb pdb:1MBV|rcsb pdb:1MBX|rcsb pdb:1MG9|rcsb pdb:1R6O|rcsb pdb:1R6Q|rcsb pdb:2W9R|rcsb pdb:2WA8|rcsb pdb:2WA9|rcsb pdb:3O1F|rcsb pdb:3O2B|rcsb pdb:3O2H|rcsb pdb:3O2O|uniprotkb:P0A8Q6(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:qgKZjSma6WZIUf0i16Rt+DvXVsM83333 rogid:E6ZDB3O/BMcHBqwmbLydi41cTWo83333 intact-crc:BEFFB59119410291|rigid:T/DcDZu00FCHnnoj4Ui/DexJxNw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A988 uniprotkb:P0A988 intact:EBI-542385|uniprotkb:P00583|uniprotkb:Q2M813|ensemblbacteria:AAC76724|ensemblbacteria:BAE77593 intact:EBI-542385|uniprotkb:P00583|uniprotkb:Q2M813|ensemblbacteria:AAC76724|ensemblbacteria:BAE77593 psi-mi:dpo3b_ecoli(display_long)|uniprotkb:dnaN(gene name)|psi-mi:dnaN(display_short)|uniprotkb:Beta-clamp processivity factor(gene name synonym)|uniprotkb:DNA polymerase III beta sliding clamp subunit(gene name synonym)|uniprotkb:JW3678(locus name)|uniprotkb:b3701(locus name) psi-mi:dpo3b_ecoli(display_long)|uniprotkb:dnaN(gene name)|psi-mi:dnaN(display_short)|uniprotkb:Beta-clamp processivity factor(gene name synonym)|uniprotkb:DNA polymerase III beta sliding clamp subunit(gene name synonym)|uniprotkb:JW3678(locus name)|uniprotkb:b3701(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341712|imex:IM-22256-1390 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAC76724(transcript)|ensemblbacteria:b3701(gene)|ensemblbacteria:BAE77593(gene)|ensemblbacteria:BAE77593(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006271"(DNA strand elongation involved in DNA replication)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0008408"(3'-5' exonuclease activity)|go:"GO:0009360"(DNA polymerase III complex)|go:"GO:0042276"(error-prone translesion synthesis)|go:"GO:0042802"(identical protein binding)|go:"GO:0044787"(bacterial-type DNA replication)|interpro:IPR001001(DNA polymerase III, beta chain)|interpro:IPR022634|interpro:IPR022635|interpro:IPR022637|rcsb pdb:1JQJ|rcsb pdb:1JQL|rcsb pdb:1MMI|rcsb pdb:1OK7|rcsb pdb:1UNN|rcsb pdb:1WAI|rcsb pdb:2POL|rcsb pdb:2XUR|rcsb pdb:3BEP|rcsb pdb:3D1E|rcsb pdb:3D1F|rcsb pdb:3D1G|rcsb pdb:3F1V|rcsb pdb:3PWE|rcsb pdb:3Q4J|rcsb pdb:3Q4K|rcsb pdb:3Q4L|rcsb pdb:3QSB|rcsb pdb:4K3K|rcsb pdb:4K3L|rcsb pdb:4K3M|rcsb pdb:4K3O|rcsb pdb:4K3P|rcsb pdb:4K3Q|rcsb pdb:4K3R|rcsb pdb:4K3S|rcsb pdb:4MJP|rcsb pdb:4MJQ|rcsb pdb:4MJR|rcsb pdb:4N94|rcsb pdb:4N95|rcsb pdb:4N96|rcsb pdb:4N97|rcsb pdb:4N98|rcsb pdb:4N99|rcsb pdb:4N9A|rcsb pdb:5FKU|rcsb pdb:5FKV|rcsb pdb:5FKW|rcsb pdb:5M1S|rcsb pdb:6E8E|rcsb pdb:6FVL|refseq:NP_418156.1|refseq:WP_000673464.1|dip:DIP-36038N|uniprotkb:P0A988(identity) ensemblbacteria:AAC76724(transcript)|ensemblbacteria:b3701(gene)|ensemblbacteria:BAE77593(gene)|ensemblbacteria:BAE77593(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006271"(DNA strand elongation involved in DNA replication)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0008408"(3'-5' exonuclease activity)|go:"GO:0009360"(DNA polymerase III complex)|go:"GO:0042276"(error-prone translesion synthesis)|go:"GO:0042802"(identical protein binding)|go:"GO:0044787"(bacterial-type DNA replication)|interpro:IPR001001(DNA polymerase III, beta chain)|interpro:IPR022634|interpro:IPR022635|interpro:IPR022637|rcsb pdb:1JQJ|rcsb pdb:1JQL|rcsb pdb:1MMI|rcsb pdb:1OK7|rcsb pdb:1UNN|rcsb pdb:1WAI|rcsb pdb:2POL|rcsb pdb:2XUR|rcsb pdb:3BEP|rcsb pdb:3D1E|rcsb pdb:3D1F|rcsb pdb:3D1G|rcsb pdb:3F1V|rcsb pdb:3PWE|rcsb pdb:3Q4J|rcsb pdb:3Q4K|rcsb pdb:3Q4L|rcsb pdb:3QSB|rcsb pdb:4K3K|rcsb pdb:4K3L|rcsb pdb:4K3M|rcsb pdb:4K3O|rcsb pdb:4K3P|rcsb pdb:4K3Q|rcsb pdb:4K3R|rcsb pdb:4K3S|rcsb pdb:4MJP|rcsb pdb:4MJQ|rcsb pdb:4MJR|rcsb pdb:4N94|rcsb pdb:4N95|rcsb pdb:4N96|rcsb pdb:4N97|rcsb pdb:4N98|rcsb pdb:4N99|rcsb pdb:4N9A|rcsb pdb:5FKU|rcsb pdb:5FKV|rcsb pdb:5FKW|rcsb pdb:5M1S|rcsb pdb:6E8E|rcsb pdb:6FVL|refseq:NP_418156.1|refseq:WP_000673464.1|dip:DIP-36038N|uniprotkb:P0A988(identity) psi-mi:"MI:0469"(intact) caution:This sequence has been withdrawn from Uniprot. caution:This sequence has been withdrawn from Uniprot. figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9CWZmgLmO/kNXmVq75u0u04mX2g83333 rogid:9CWZmgLmO/kNXmVq75u0u04mX2g83333 intact-crc:5C4D45F0D28C1A8D|rigid:nUecnephoAegEpQK/D1oExcJBWw false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A9B2 uniprotkb:P0A9B6 intact:EBI-368904|uniprotkb:P06977|ensemblbacteria:AAC74849|ensemblbacteria:BAA15576 intact:EBI-1130931|uniprotkb:P11603|uniprotkb:Q2M9R5|ensemblbacteria:AAC75964|ensemblbacteria:BAE76991 psi-mi:g3p1_ecoli(display_long)|uniprotkb:gapA(gene name)|psi-mi:gapA(display_short)|uniprotkb:NAD-dependent glyceraldehyde-3-phosphate dehydrogenase(gene name synonym)|uniprotkb:JW1768(locus name)|uniprotkb:b1779(locus name) psi-mi:e4pd_ecoli(display_long)|uniprotkb:epd(gene name)|psi-mi:epd(display_short)|uniprotkb:gapB(gene name synonym)|uniprotkb:b2927(locus name)|uniprotkb:JW2894(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341729|imex:IM-22256-1391 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416293.1|refseq:WP_000153502.1|ensemblbacteria:AAC74849(transcript)|ensemblbacteria:b1779(gene)|ensemblbacteria:BAA15576(gene)|ensemblbacteria:BAA15576(transcript)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0006096"(glycolytic process)|go:"GO:0016020"(membrane)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|interpro:IPR006424(Glyceraldehyde-3-phosphate dehydrogenase, type I)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|interpro:IPR036291|rcsb pdb:1DC4|rcsb pdb:1DC5|rcsb pdb:1DC6|rcsb pdb:1GAD|rcsb pdb:1GAE|rcsb pdb:1S7C|rcsb pdb:2VYN|rcsb pdb:2VYV|rcsb pdb:5ZA0|rcsb pdb:6IO4|rcsb pdb:6IO6|rcsb pdb:6IOJ|rcsb pdb:6UTM|rcsb pdb:6UTN|rcsb pdb:6UTO|rcsb pdb:1DC3|mint:P0A9B2|dip:DIP-31848N|uniprotkb:P0A9B2(identity) refseq:WP_000218480.1|ensemblbacteria:AAC75964(transcript)|ensemblbacteria:b2927(gene)|ensemblbacteria:BAE76991(gene)|ensemblbacteria:BAE76991(transcript)|go:"GO:0004365"("glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006006"(glucose metabolic process)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0048001"(erythrose-4-phosphate dehydrogenase activity)|go:"GO:0051287"(NAD binding)|interpro:IPR006422(D-erythrose-4-phosphate dehydrogenase)|interpro:IPR020828|interpro:IPR020829|interpro:IPR020830|interpro:IPR020831|interpro:IPR036291|rcsb pdb:2X5J|rcsb pdb:2X5K|rcsb pdb:2XF8|go:"GO:0042823"(pyridoxal phosphate biosynthetic process)|refseq:NP_417402.1|dip:DIP-9520N|uniprotkb:P0A9B6(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:wjDK2dtZ4nPJZ0L7OVRiKfQITtg83333 rogid:ZaDIex4EUIdxPVPoDyt7NN+G61I83333 intact-crc:D2FBBC5201534B6D|rigid:CMLdFa462ddbl3+ZLp/7ZejcZbM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A9G4 uniprotkb:P0A9G4 intact:EBI-1117686|uniprotkb:P77565|uniprotkb:Q2MBU0|ensemblbacteria:AAC73589|ensemblbacteria:BAE76266 intact:EBI-1117686|uniprotkb:P77565|uniprotkb:Q2MBU0|ensemblbacteria:AAC73589|ensemblbacteria:BAE76266 psi-mi:cuer_ecoli(display_long)|uniprotkb:copR(gene name synonym)|uniprotkb:ybbI(gene name synonym)|uniprotkb:Copper efflux regulator(gene name synonym)|uniprotkb:Copper export regulator(gene name synonym)|uniprotkb:cueR(gene name)|psi-mi:cueR(display_short)|uniprotkb:b0487(locus name)|uniprotkb:JW0476(locus name) psi-mi:cuer_ecoli(display_long)|uniprotkb:copR(gene name synonym)|uniprotkb:ybbI(gene name synonym)|uniprotkb:Copper efflux regulator(gene name synonym)|uniprotkb:Copper export regulator(gene name synonym)|uniprotkb:cueR(gene name)|psi-mi:cueR(display_short)|uniprotkb:b0487(locus name)|uniprotkb:JW0476(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341746|imex:IM-22256-1392 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415020.1|ensemblbacteria:AAC73589(transcript)|ensemblbacteria:b0487(gene)|ensemblbacteria:BAE76266(gene)|ensemblbacteria:BAE76266(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0000986"|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005507"(copper ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|interpro:IPR011789("Cu(I)-responsive transcriptional regulator")|rcsb pdb:1Q05|rcsb pdb:1Q06|rcsb pdb:1Q07|rcsb pdb:4WLS|rcsb pdb:4WLW|rcsb pdb:6LDI|rcsb pdb:6XH7|rcsb pdb:6XH8|rcsb pdb:7C17|refseq:WP_001026747.1|dip:DIP-51206N|uniprotkb:P0A9G4(identity) refseq:NP_415020.1|ensemblbacteria:AAC73589(transcript)|ensemblbacteria:b0487(gene)|ensemblbacteria:BAE76266(gene)|ensemblbacteria:BAE76266(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0000986"|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005507"(copper ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|interpro:IPR011789("Cu(I)-responsive transcriptional regulator")|rcsb pdb:1Q05|rcsb pdb:1Q06|rcsb pdb:1Q07|rcsb pdb:4WLS|rcsb pdb:4WLW|rcsb pdb:6LDI|rcsb pdb:6XH7|rcsb pdb:6XH8|rcsb pdb:7C17|refseq:WP_001026747.1|dip:DIP-51206N|uniprotkb:P0A9G4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4n/BzYuYdNy5cKz0kTjgB/GSblk83333 rogid:4n/BzYuYdNy5cKz0kTjgB/GSblk83333 intact-crc:2142B5E9AAEC480B|rigid:pE+vJ0zdSQSW1ucu+mivWB4SLTU false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A6E6 uniprotkb:P0ABA6 intact:EBI-544362|uniprotkb:P00832|uniprotkb:Q2M849|ensemblbacteria:AAC76754|ensemblbacteria:BAE77557 intact:EBI-544306|uniprotkb:P00837|uniprotkb:P00838|uniprotkb:Q2M851|ensemblbacteria:AAC76756|ensemblbacteria:BAE77555 psi-mi:atpe_ecoli(display_long)|uniprotkb:atpC(gene name)|psi-mi:atpC(display_short)|uniprotkb:papG(gene name synonym)|uniprotkb:uncC(gene name synonym)|uniprotkb:b3731(locus name)|uniprotkb:ATP synthase F1 sector epsilon subunit(gene name synonym)|uniprotkb:JW3709(locus name)|uniprotkb:F-ATPase epsilon subunit(gene name synonym) psi-mi:atpg_ecoli(display_long)|uniprotkb:atpG(gene name)|psi-mi:atpG(display_short)|uniprotkb:papC(gene name synonym)|uniprotkb:uncG(gene name synonym)|uniprotkb:b3733(locus name)|uniprotkb:ATP synthase F1 sector gamma subunit(gene name synonym)|uniprotkb:JW3711(locus name)|uniprotkb:F-ATPase gamma subunit(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341763|imex:IM-22256-1393 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_418187.1|ensemblbacteria:AAC76754(transcript)|ensemblbacteria:b3731(gene)|ensemblbacteria:BAE77557(gene)|ensemblbacteria:BAE77557(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|interpro:IPR001469(ATPase, F1 complex, delta/epsilon subunit)|interpro:IPR020546|interpro:IPR036771|interpro:IPR036794|rcsb pdb:1AQT|rcsb pdb:1BSH|rcsb pdb:1BSN|rcsb pdb:1FS0|rcsb pdb:1QO1|rcsb pdb:3OAA|interpro:IPR020547|rcsb pdb:5T4O|rcsb pdb:5T4P|rcsb pdb:5T4Q|rcsb pdb:6OQR|rcsb pdb:6OQS|rcsb pdb:6OQT|rcsb pdb:6OQU|rcsb pdb:6OQV|rcsb pdb:6OQW|rcsb pdb:6PQV|rcsb pdb:6WNQ|rcsb pdb:6WNR|refseq:WP_001251965.1|dip:DIP-47828N|uniprotkb:P0A6E6(identity) refseq:NP_418189.1|ensemblbacteria:AAC76756(transcript)|ensemblbacteria:b3733(gene)|ensemblbacteria:BAE77555(gene)|ensemblbacteria:BAE77555(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0015986"(ATP synthesis coupled proton transport)|go:"GO:0016020"(membrane)|go:"GO:0042777"(plasma membrane ATP synthesis coupled proton transport)|go:"GO:0045261"("proton-transporting ATP synthase complex, catalytic core F(1)")|go:"GO:0046933"(proton-transporting ATP synthase activity, rotational mechanism)|go:"GO:0046961"(proton-transporting ATPase activity, rotational mechanism)|interpro:IPR000131(ATPase, F1 complex, gamma subunit)|interpro:IPR023632|interpro:IPR035968|rcsb pdb:1D8S|rcsb pdb:1FS0|rcsb pdb:3OAA|rcsb pdb:5T4O|rcsb pdb:5T4P|rcsb pdb:5T4Q|rcsb pdb:6OQR|rcsb pdb:6OQS|rcsb pdb:6OQT|rcsb pdb:6OQU|rcsb pdb:6OQV|rcsb pdb:6OQW|rcsb pdb:6PQV|rcsb pdb:6WNQ|rcsb pdb:6WNR|refseq:WP_000896498.1|dip:DIP-35938N|uniprotkb:P0ABA6(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:Lu3aHvHIJXCG5OTxvZeCQ4MOnBQ83333 rogid:mXmh0app7UB2MkuFeXtJQfYukFU83333 intact-crc:1447DCC10E99D035|rigid:04QM65l7MPtywpIITph3WGt9/Yc false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A9Q5 uniprotkb:P0ABD5 intact:EBI-542064|uniprotkb:P08193|uniprotkb:P76937|uniprotkb:P78251|ensemblbacteria:AAC75376|ensemblbacteria:BAA16173 intact:EBI-542031|uniprotkb:P30867|ensemblbacteria:AAC73296|ensemblbacteria:BAA77860 psi-mi:accd_ecoli(display_long)|uniprotkb:accD(gene name)|psi-mi:accD(display_short)|uniprotkb:dedB(gene name synonym)|uniprotkb:usg(gene name synonym)|uniprotkb:b2316(locus name)|uniprotkb:JW2313(locus name) psi-mi:acca_ecoli(display_long)|uniprotkb:accA(gene name)|psi-mi:accA(display_short)|uniprotkb:b0185(locus name)|uniprotkb:JW0180(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341780|imex:IM-22256-1394 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416819.1|ensemblbacteria:AAC75376(transcript)|ensemblbacteria:b2316(gene)|ensemblbacteria:BAA16173(gene)|ensemblbacteria:BAA16173(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0009329"(acetate CoA-transferase complex)|go:"GO:0016743"(carboxyl- or carbamoyltransferase activity)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0042759"(long-chain fatty acid biosynthetic process)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR029045|interpro:IPR034733|interpro:IPR041010|rcsb pdb:2F9Y|refseq:WP_000118404.1|mint:P0A9Q5|dip:DIP-35878N|uniprotkb:P0A9Q5(identity) refseq:NP_414727.1|ensemblbacteria:AAC73296(transcript)|ensemblbacteria:b0185(gene)|ensemblbacteria:BAA77860(gene)|ensemblbacteria:BAA77860(transcript)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009329"(acetate CoA-transferase complex)|go:"GO:0016743"(carboxyl- or carbamoyltransferase activity)|go:"GO:0042759"(long-chain fatty acid biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|interpro:IPR029045|rcsb pdb:2F9Y|refseq:WP_000055741.1|mint:P0ABD5|dip:DIP-35897N|uniprotkb:P0ABD5(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:2Uk45RN0rxTTpbIwwVZ435+rao883333 rogid:gZkDZYL921W9jVNlowVYbGxlvfQ83333 intact-crc:FA7F086A50A7E57C|rigid:BDfc+okm+KXgs7jW6nOduNXAXw0 false activation domain tag:n-n("MI:0689") dna binding domain tag:c-c("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0ABD5 uniprotkb:P0A9Q5 intact:EBI-542031|uniprotkb:P30867|ensemblbacteria:AAC73296|ensemblbacteria:BAA77860 intact:EBI-542064|uniprotkb:P08193|uniprotkb:P76937|uniprotkb:P78251|ensemblbacteria:AAC75376|ensemblbacteria:BAA16173 psi-mi:acca_ecoli(display_long)|uniprotkb:accA(gene name)|psi-mi:accA(display_short)|uniprotkb:b0185(locus name)|uniprotkb:JW0180(locus name) psi-mi:accd_ecoli(display_long)|uniprotkb:accD(gene name)|psi-mi:accD(display_short)|uniprotkb:dedB(gene name synonym)|uniprotkb:usg(gene name synonym)|uniprotkb:b2316(locus name)|uniprotkb:JW2313(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341797|imex:IM-22256-1395 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_414727.1|ensemblbacteria:AAC73296(transcript)|ensemblbacteria:b0185(gene)|ensemblbacteria:BAA77860(gene)|ensemblbacteria:BAA77860(transcript)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0009329"(acetate CoA-transferase complex)|go:"GO:0016743"(carboxyl- or carbamoyltransferase activity)|go:"GO:0042759"(long-chain fatty acid biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR001095(Acetyl-CoA carboxylase, alpha subunit)|interpro:IPR011763(Acetyl-coenzyme A carboxyltransferase, C-terminal)|interpro:IPR029045|rcsb pdb:2F9Y|refseq:WP_000055741.1|mint:P0ABD5|dip:DIP-35897N|uniprotkb:P0ABD5(identity) refseq:NP_416819.1|ensemblbacteria:AAC75376(transcript)|ensemblbacteria:b2316(gene)|ensemblbacteria:BAA16173(gene)|ensemblbacteria:BAA16173(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0003989"(acetyl-CoA carboxylase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0009329"(acetate CoA-transferase complex)|go:"GO:0016743"(carboxyl- or carbamoyltransferase activity)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0042759"(long-chain fatty acid biosynthetic process)|go:"GO:2001295"(malonyl-CoA biosynthetic process)|interpro:IPR000438(Acetyl-CoA carboxylase carboxyl transferase, beta subunit)|interpro:IPR011762(Acetyl-coenzyme A carboxyltransferase, N-terminal)|interpro:IPR029045|interpro:IPR034733|interpro:IPR041010|rcsb pdb:2F9Y|refseq:WP_000118404.1|mint:P0A9Q5|dip:DIP-35878N|uniprotkb:P0A9Q5(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gZkDZYL921W9jVNlowVYbGxlvfQ83333 rogid:2Uk45RN0rxTTpbIwwVZ435+rao883333 intact-crc:9C73F9C2DCC4B7ED|rigid:BDfc+okm+KXgs7jW6nOduNXAXw0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0ABW9 uniprotkb:P75617 intact:EBI-1121976|uniprotkb:P75934|ensemblbacteria:BAA35881|ensemblbacteria:AAC74157 intact:EBI-1128411|uniprotkb:Q2MCH9|uniprotkb:Q47290|ensemblbacteria:AAC73122|ensemblbacteria:BAE76027 psi-mi:flgb_ecoli(display_long)|uniprotkb:Putative proximal rod protein(gene name synonym)|uniprotkb:flgB(gene name)|psi-mi:flgB(display_short)|uniprotkb:fla FII(gene name synonym)|uniprotkb:flbA(gene name synonym)|uniprotkb:b1073(locus name)|uniprotkb:JW1060(locus name) psi-mi:yaaw_ecoli(display_long)|uniprotkb:yaaW(gene name)|psi-mi:yaaW(display_short)|uniprotkb:b0011(locus name)|uniprotkb:JW0010(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341814|imex:IM-22256-1396 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000884702.1|ensemblbacteria:BAA35881(gene)|ensemblbacteria:BAA35881(transcript)|go:"GO:0030694"(bacterial-type flagellum basal body, rod)|go:"GO:0071978"(bacterial-type flagellum-dependent swarming motility)|ensemblbacteria:AAC74157(transcript)|ensemblbacteria:b1073(gene)|interpro:IPR001444(Flagellar basal body rod protein)|interpro:IPR019776|interpro:IPR006300(Flagellar basal-body rod protein FlgB)|refseq:NP_415591.1|uniprotkb:P0ABW9(identity) refseq:NP_414552.1|refseq:WP_001102367.1|ensemblbacteria:AAC73122(transcript)|ensemblbacteria:b0011(gene)|ensemblbacteria:BAE76027(gene)|ensemblbacteria:BAE76027(transcript)|interpro:IPR021150|interpro:IPR025217|dip:DIP-11163N|uniprotkb:P75617(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:0ZpASo7ivaNFGG5nM+RouVW2sAs83333 rogid:63ygdvn6hZUjrf+chLlnY6rghys83333 intact-crc:F42BE26E881CA690|rigid:ugUWLENj5G/FPQTV9kkw7wKcFAI false dna binding domain tag:c-c("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P31825 uniprotkb:P0AC47 intact:EBI-1116841|uniprotkb:P76591|uniprotkb:Q2MAF5|ensemblbacteria:AAC75628|ensemblbacteria:BAE76751 intact:EBI-906724|uniprotkb:P00364|uniprotkb:Q2M6E9|ensemblbacteria:AAC77113|ensemblbacteria:BAE78157 psi-mi:trmn6_ecoli(display_long)|uniprotkb:yfiC(gene name)|psi-mi:yfiC(display_short)|uniprotkb:b2575(locus name)|uniprotkb:JW2559(locus name)|uniprotkb:tRNA m6A37 methyltransferase(gene name synonym) psi-mi:frdb_ecoli(display_long)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:JW4114(locus name)|uniprotkb:b4153(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341831|imex:IM-22256-1397 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007848(Methyltransferase small)|refseq:WP_001295363.1|refseq:NP_417070.2|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR022882|ensemblbacteria:AAC75628(transcript)|ensemblbacteria:b2575(gene)|ensemblbacteria:BAE76751(gene)|ensemblbacteria:BAE76751(transcript)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016430"("tRNA (adenine-N6-)-methyltransferase activity")|go:"GO:0030488"(tRNA methylation)|interpro:IPR029063|uniprotkb:P31825(identity) refseq:NP_418577.1|refseq:WP_000829498.1|dip:DIP-9682N|ensemblbacteria:AAC77113(transcript)|ensemblbacteria:b4153(gene)|ensemblbacteria:BAE78157(gene)|ensemblbacteria:BAE78157(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0006113"(fermentation)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016020"(membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0045284"(plasma membrane fumarate reductase complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|go:"GO:0102040"("fumarate reductase (menaquinone)")|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|interpro:IPR036010|rcsb pdb:1KF6|rcsb pdb:1KFY|rcsb pdb:1L0V|rcsb pdb:2B76|rcsb pdb:3CIR|rcsb pdb:3P4P|rcsb pdb:3P4Q|rcsb pdb:3P4R|rcsb pdb:3P4S|uniprotkb:P0AC47(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5wm7gFYeyEcTw7LuN3AKiasAX9c83333 rogid:6BEDH9lhrN3Ahc7QDc8KQG9AFZY83333 intact-crc:998BC16D36F5B46F|rigid:+jCWmdRzKLTNC0Q7DjmlvlgZS2M false activation domain tag:n-n("MI:0689") dna binding domain tag:c-c("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P31825 uniprotkb:P0AC47 intact:EBI-1116841|uniprotkb:P76591|uniprotkb:Q2MAF5|ensemblbacteria:AAC75628|ensemblbacteria:BAE76751 intact:EBI-906724|uniprotkb:P00364|uniprotkb:Q2M6E9|ensemblbacteria:AAC77113|ensemblbacteria:BAE78157 psi-mi:trmn6_ecoli(display_long)|uniprotkb:yfiC(gene name)|psi-mi:yfiC(display_short)|uniprotkb:b2575(locus name)|uniprotkb:JW2559(locus name)|uniprotkb:tRNA m6A37 methyltransferase(gene name synonym) psi-mi:frdb_ecoli(display_long)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:JW4114(locus name)|uniprotkb:b4153(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341848|imex:IM-22256-1398 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR007848(Methyltransferase small)|refseq:WP_001295363.1|refseq:NP_417070.2|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR022882|ensemblbacteria:AAC75628(transcript)|ensemblbacteria:b2575(gene)|ensemblbacteria:BAE76751(gene)|ensemblbacteria:BAE76751(transcript)|go:"GO:0003676"(nucleic acid binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016430"("tRNA (adenine-N6-)-methyltransferase activity")|go:"GO:0030488"(tRNA methylation)|interpro:IPR029063|uniprotkb:P31825(identity) refseq:NP_418577.1|refseq:WP_000829498.1|dip:DIP-9682N|ensemblbacteria:AAC77113(transcript)|ensemblbacteria:b4153(gene)|ensemblbacteria:BAE78157(gene)|ensemblbacteria:BAE78157(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0006113"(fermentation)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016020"(membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0045284"(plasma membrane fumarate reductase complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|go:"GO:0102040"("fumarate reductase (menaquinone)")|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|interpro:IPR036010|rcsb pdb:1KF6|rcsb pdb:1KFY|rcsb pdb:1L0V|rcsb pdb:2B76|rcsb pdb:3CIR|rcsb pdb:3P4P|rcsb pdb:3P4Q|rcsb pdb:3P4R|rcsb pdb:3P4S|uniprotkb:P0AC47(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5wm7gFYeyEcTw7LuN3AKiasAX9c83333 rogid:6BEDH9lhrN3Ahc7QDc8KQG9AFZY83333 intact-crc:A5EAF95A30CAD294|rigid:+jCWmdRzKLTNC0Q7DjmlvlgZS2M false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P06710 uniprotkb:P0ACS5 intact:EBI-549140|uniprotkb:Q2MBV7|uniprotkb:Q47721|uniprotkb:A0A385XJC4|ensemblbacteria:AAC73572|ensemblbacteria:AYC08179|ensemblbacteria:BAE76249 intact:EBI-562184|uniprotkb:P36676|ensemblbacteria:AAC76317|ensemblbacteria:BAE77999|uniprotkb:Q2M6V7 psi-mi:dpo3x_ecoli(display_long)|uniprotkb:dnaX(gene name)|psi-mi:dnaX(display_short)|uniprotkb:dnaZ(gene name synonym)|uniprotkb:dnaZX(gene name synonym)|uniprotkb:b0470(locus name)|uniprotkb:JW0459(locus name)|uniprotkb:DNA polymerase III subunit gamma(gene name synonym) psi-mi:zntr_ecoli(display_long)|uniprotkb:yhdM(gene name synonym)|uniprotkb:"Zn(II)-responsive regulator of zntA"(gene name synonym)|uniprotkb:zntR(gene name)|psi-mi:zntR(display_short)|uniprotkb:b3292(locus name)|uniprotkb:JW3254(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341865|imex:IM-22256-1399 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415003.1|refseq:WP_000122013.1|dip:DIP-9464N|ensemblbacteria:AAC73572(transcript)|ensemblbacteria:AYC08179(transcript)|ensemblbacteria:b0470(gene)|ensemblbacteria:BAE76249(gene)|ensemblbacteria:BAE76249(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003887"(DNA-directed DNA polymerase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0006260"(DNA replication)|go:"GO:0006261"(DNA-dependent DNA replication)|go:"GO:0009360"(DNA polymerase III complex)|go:"GO:0017111"(nucleoside-triphosphatase activity)|go:"GO:0030337"(DNA polymerase processivity factor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0043846"(DNA polymerase III, clamp loader complex)|interpro:IPR001270(Chaperonin clpA/B)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR008921(DNA polymerase III clamp loader subunit, C-terminal)|interpro:IPR012763(DNA polymerase III, subunits gamma and tau)|interpro:IPR021029|interpro:IPR022001|interpro:IPR022754|interpro:IPR027417|interpro:IPR038249|rcsb pdb:1JR3|rcsb pdb:1NJF|rcsb pdb:1NJG|rcsb pdb:1XXH|rcsb pdb:1XXI|rcsb pdb:2AYA|rcsb pdb:3GLF|rcsb pdb:3GLG|rcsb pdb:3GLH|rcsb pdb:3GLI|rcsb pdb:5FKU|rcsb pdb:5FKV|uniprotkb:P06710(identity) ensemblbacteria:AAC76317(transcript)|ensemblbacteria:b3292(gene)|ensemblbacteria:BAE77999(gene)|ensemblbacteria:BAE77999(transcript)|go:"GO:0000986"|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|interpro:IPR011788("Zn(II)-responsive transcriptional regulator")|rcsb pdb:1Q08|rcsb pdb:1Q09|rcsb pdb:1Q0A|refseq:NP_417751.1|refseq:WP_000285607.1|dip:DIP-48253N|uniprotkb:P0ACS5(identity) psi-mi:"MI:0469"(intact) - crc64:EB451201C8BDCE20 figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:I70gmzAJoBvK53kEZUaKOv/zshg83333 rogid:2Fb0Np20i0Ab90N0Peth8+IICWE83333 intact-crc:63C780C805985A61|rigid:F1C+oNb4cBLlh/+oW36xz8eCxP8 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A9G4 uniprotkb:P0ACS5 intact:EBI-1117686|uniprotkb:P77565|uniprotkb:Q2MBU0|ensemblbacteria:AAC73589|ensemblbacteria:BAE76266 intact:EBI-562184|uniprotkb:P36676|ensemblbacteria:AAC76317|ensemblbacteria:BAE77999|uniprotkb:Q2M6V7 psi-mi:cuer_ecoli(display_long)|uniprotkb:copR(gene name synonym)|uniprotkb:ybbI(gene name synonym)|uniprotkb:Copper efflux regulator(gene name synonym)|uniprotkb:Copper export regulator(gene name synonym)|uniprotkb:cueR(gene name)|psi-mi:cueR(display_short)|uniprotkb:b0487(locus name)|uniprotkb:JW0476(locus name) psi-mi:zntr_ecoli(display_long)|uniprotkb:yhdM(gene name synonym)|uniprotkb:"Zn(II)-responsive regulator of zntA"(gene name synonym)|uniprotkb:zntR(gene name)|psi-mi:zntR(display_short)|uniprotkb:b3292(locus name)|uniprotkb:JW3254(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341882|imex:IM-22256-1400 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415020.1|ensemblbacteria:AAC73589(transcript)|ensemblbacteria:b0487(gene)|ensemblbacteria:BAE76266(gene)|ensemblbacteria:BAE76266(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0000986"|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005507"(copper ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|interpro:IPR011789("Cu(I)-responsive transcriptional regulator")|rcsb pdb:1Q05|rcsb pdb:1Q06|rcsb pdb:1Q07|rcsb pdb:4WLS|rcsb pdb:4WLW|rcsb pdb:6LDI|rcsb pdb:6XH7|rcsb pdb:6XH8|rcsb pdb:7C17|refseq:WP_001026747.1|dip:DIP-51206N|uniprotkb:P0A9G4(identity) ensemblbacteria:AAC76317(transcript)|ensemblbacteria:b3292(gene)|ensemblbacteria:BAE77999(gene)|ensemblbacteria:BAE77999(transcript)|go:"GO:0000986"|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0008270"(zinc ion binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|interpro:IPR011788("Zn(II)-responsive transcriptional regulator")|rcsb pdb:1Q08|rcsb pdb:1Q09|rcsb pdb:1Q0A|refseq:NP_417751.1|refseq:WP_000285607.1|dip:DIP-48253N|uniprotkb:P0ACS5(identity) psi-mi:"MI:0469"(intact) - crc64:EB451201C8BDCE20 figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4n/BzYuYdNy5cKz0kTjgB/GSblk83333 rogid:2Fb0Np20i0Ab90N0Peth8+IICWE83333 intact-crc:03C298E5FA393B6A|rigid:hY6qDWvt9tcm3r+1YzVmaLnDSbY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P77485 uniprotkb:P0ACZ8 intact:EBI-9155864|uniprotkb:Q9R7T9|uniprotkb:Q9R7U0|ensemblbacteria:AAC73671|ensemblbacteria:BAA35204 intact:EBI-1118807|uniprotkb:P77380|ensemblbacteria:AAC73672|ensemblbacteria:BAA35205 psi-mi:cuss_ecoli(display_long)|uniprotkb:cusS(gene name)|psi-mi:cusS(display_short)|uniprotkb:ybcZ(gene name synonym)|uniprotkb:JW5082(locus name)|uniprotkb:b0570(locus name) psi-mi:cusr_ecoli(display_long)|uniprotkb:cusR(gene name)|psi-mi:cusR(display_short)|uniprotkb:b0571(locus name)|uniprotkb:JW0560(locus name)|uniprotkb:ylcA(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341899|imex:IM-22256-1401 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415102.1|refseq:WP_000253839.1|dip:DIP-9349N|ensemblbacteria:AAC73671(transcript)|ensemblbacteria:b0570(gene)|ensemblbacteria:BAA35204(gene)|ensemblbacteria:BAA35204(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0004673"(protein histidine kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0016020"(membrane)|go:"GO:0016310"(phosphorylation)|go:"GO:0018106"(peptidyl-histidine phosphorylation)|go:"GO:0046872"(metal ion binding)|go:"GO:0071280"(cellular response to copper ion)|go:"GO:0071292"(cellular response to silver ion)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR006290(Signal transduction histidine kinase, heavy metal sensor)|interpro:IPR036097|interpro:IPR036890|rcsb pdb:5KU5|uniprotkb:P77485(identity) ensemblbacteria:AAC73672(transcript)|ensemblbacteria:b0571(gene)|ensemblbacteria:BAA35205(gene)|ensemblbacteria:BAA35205(transcript)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0046688"(response to copper ion)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR006291(Signal transduction response regulator, heavy metal response)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|interpro:IPR036388|interpro:IPR039420|refseq:WP_000770953.1|refseq:NP_415103.1|dip:DIP-9348N|uniprotkb:P0ACZ8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3kjTlKCe43T/GlSsXvC9wX1pPrs83333 rogid:h9ApAA+LIlHIkKLPxVygwUyX2gc83333 intact-crc:265864CB97F80E60|rigid:SoeQopg4e0YJkej2CQOLO3GKduY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P12996 uniprotkb:P0ADZ4 intact:EBI-557917|uniprotkb:Q2MBJ4|ensemblbacteria:AAC73862|ensemblbacteria:BAE76362 intact:EBI-545119|uniprotkb:P02371|ensemblbacteria:AAC76199|ensemblbacteria:BAE77211|uniprotkb:Q2M945 psi-mi:biob_ecoli(display_long)|uniprotkb:bioB(gene name)|psi-mi:bioB(display_short)|uniprotkb:b0775(locus name)|uniprotkb:JW0758(locus name) psi-mi:rs15_ecoli(display_long)|uniprotkb:rpsO(gene name)|psi-mi:rpsO(display_short)|uniprotkb:secC(gene name synonym)|uniprotkb:b3165(locus name)|uniprotkb:JW3134(locus name)|uniprotkb:Small ribosomal subunit protein uS15(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341916|imex:IM-22256-1402 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415296.1|refseq:WP_000951213.1|dip:DIP-9220N|ensemblbacteria:AAC73862(transcript)|ensemblbacteria:b0775(gene)|ensemblbacteria:BAE76362(gene)|ensemblbacteria:BAE76362(transcript)|go:"GO:0004076"(biotin synthase activity)|go:"GO:0005506"(iron ion binding)|go:"GO:0009102"(biotin biosynthetic process)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|interpro:IPR002684(Biotin synthase)|interpro:IPR006638(Elongator protein 3/MiaB/NifB)|interpro:IPR007197(Radical SAM)|interpro:IPR010722(Biotin and thiamin synthesis associated)|interpro:IPR013785(Aldolase-type TIM barrel)|interpro:IPR024177|rcsb pdb:1R30|uniprotkb:P12996(identity) rcsb pdb:4V6K|interpro:IPR000589(Ribosomal protein S15)|interpro:IPR005290(Ribosomal protein S15, bacterial-type)|interpro:IPR009068(S15/NS1, RNA-binding)|rcsb pdb:1EG0|rcsb pdb:2VAZ|rcsb pdb:2YKR|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|ensemblbacteria:AAC76199(transcript)|ensemblbacteria:b3165(gene)|ensemblbacteria:BAE77211(gene)|ensemblbacteria:BAE77211(transcript)|go:"GO:0000028"(ribosomal small subunit assembly)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0006417"(regulation of translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|go:"GO:1903231"(mRNA binding involved in posttranscriptional gene silencing)|refseq:NP_417634.1|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WF1|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6NQB|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6W7N|rcsb pdb:6W7W|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NO4|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|rcsb pdb:5UYQ|rcsb pdb:5UZ4|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XE0|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6Y69|rcsb pdb:6ZTL|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|refseq:WP_000059466.1|dip:DIP-47909N|uniprotkb:P0ADZ4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:s+6J95sQZVjR4mAa43puHjwzm+I83333 rogid:OKFq19KikVZaG++ottugczP7/yk83333 intact-crc:7D132E25DB08DFB0|rigid:MxfPd1hrEx3H3sLGk7Y8z2M5xVU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P15070 uniprotkb:P0ADZ4 intact:EBI-2011987|ensemblbacteria:AAC75013|ensemblbacteria:BAA15771 intact:EBI-545119|uniprotkb:P02371|ensemblbacteria:AAC76199|ensemblbacteria:BAE77211|uniprotkb:Q2M945 psi-mi:flin_ecoli(display_long)|uniprotkb:fliN(gene name)|psi-mi:fliN(display_short)|uniprotkb:flaN(gene name synonym)|uniprotkb:motD(gene name synonym)|uniprotkb:b1946(locus name)|uniprotkb:JW1930(locus name) psi-mi:rs15_ecoli(display_long)|uniprotkb:rpsO(gene name)|psi-mi:rpsO(display_short)|uniprotkb:secC(gene name synonym)|uniprotkb:b3165(locus name)|uniprotkb:JW3134(locus name)|uniprotkb:Small ribosomal subunit protein uS15(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341933|imex:IM-22256-1403 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001282101.1|refseq:NP_416456.1|dip:DIP-1101N|ensemblbacteria:AAC75013(transcript)|ensemblbacteria:b1946(gene)|ensemblbacteria:BAA15771(gene)|ensemblbacteria:BAA15771(transcript)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|interpro:IPR031576|interpro:IPR036429|uniprotkb:P15070(identity) rcsb pdb:4V6K|interpro:IPR000589(Ribosomal protein S15)|interpro:IPR005290(Ribosomal protein S15, bacterial-type)|interpro:IPR009068(S15/NS1, RNA-binding)|rcsb pdb:1EG0|rcsb pdb:2VAZ|rcsb pdb:2YKR|rcsb pdb:3J9Y|rcsb pdb:3J9Z|rcsb pdb:3JA1|rcsb pdb:3JBU|rcsb pdb:3JBV|rcsb pdb:3JCD|rcsb pdb:3JCE|rcsb pdb:3JCJ|rcsb pdb:3JCN|rcsb pdb:4A2I|rcsb pdb:4ADV|rcsb pdb:4U1U|rcsb pdb:4U1V|rcsb pdb:4U20|rcsb pdb:4U24|rcsb pdb:4U25|rcsb pdb:4U26|rcsb pdb:4U27|rcsb pdb:4V47|rcsb pdb:4V48|rcsb pdb:4V4H|rcsb pdb:4V4Q|rcsb pdb:4V4V|rcsb pdb:4V4W|rcsb pdb:4V50|rcsb pdb:4V52|rcsb pdb:4V53|rcsb pdb:4V54|rcsb pdb:4V55|rcsb pdb:4V56|rcsb pdb:4V57|rcsb pdb:4V5B|rcsb pdb:4V5H|rcsb pdb:4V5Y|rcsb pdb:4V64|rcsb pdb:4V65|rcsb pdb:4V66|rcsb pdb:4V69|rcsb pdb:4V6C|rcsb pdb:4V6D|rcsb pdb:4V6E|ensemblbacteria:AAC76199(transcript)|ensemblbacteria:b3165(gene)|ensemblbacteria:BAE77211(gene)|ensemblbacteria:BAE77211(transcript)|go:"GO:0000028"(ribosomal small subunit assembly)|go:"GO:0003735"(structural constituent of ribosome)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0006417"(regulation of translation)|go:"GO:0019843"(rRNA binding)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0070181"(small ribosomal subunit rRNA binding)|go:"GO:1903231"(mRNA binding involved in posttranscriptional gene silencing)|refseq:NP_417634.1|rcsb pdb:4V6L|rcsb pdb:4V6M|rcsb pdb:4V6N|rcsb pdb:4V6O|rcsb pdb:4V6P|rcsb pdb:4V6Q|rcsb pdb:4V6R|rcsb pdb:4V6S|rcsb pdb:4V6T|rcsb pdb:4V6V|rcsb pdb:4V6Y|rcsb pdb:4V6Z|rcsb pdb:4V70|rcsb pdb:4V71|rcsb pdb:4V72|rcsb pdb:4V73|rcsb pdb:4V74|rcsb pdb:4V75|rcsb pdb:4V76|rcsb pdb:4V77|rcsb pdb:4V78|rcsb pdb:4V79|rcsb pdb:4V7A|rcsb pdb:4V7B|rcsb pdb:4V7C|rcsb pdb:4V7D|rcsb pdb:4V7I|rcsb pdb:4V7S|rcsb pdb:4V7T|rcsb pdb:4V7U|rcsb pdb:4V7V|rcsb pdb:4V85|rcsb pdb:4V89|rcsb pdb:4V9C|rcsb pdb:4V9D|rcsb pdb:4V9O|rcsb pdb:4V9P|rcsb pdb:4WF1|rcsb pdb:4WWW|rcsb pdb:4YBB|rcsb pdb:5AFI|rcsb pdb:5H5U|rcsb pdb:5IQR|rcsb pdb:5IT8|rcsb pdb:5J5B|rcsb pdb:5J7L|rcsb pdb:5J88|rcsb pdb:5J8A|rcsb pdb:5J91|rcsb pdb:5JC9|rcsb pdb:5JTE|rcsb pdb:5JU8|rcsb pdb:5KCR|rcsb pdb:5KCS|rcsb pdb:5KPS|rcsb pdb:5KPV|rcsb pdb:5KPW|rcsb pdb:5KPX|rcsb pdb:5L3P|rcsb pdb:5LZA|rcsb pdb:5LZB|rcsb pdb:5LZC|rcsb pdb:5LZD|rcsb pdb:6ENJ|rcsb pdb:6ENU|rcsb pdb:6GWT|rcsb pdb:6GXM|rcsb pdb:6GXN|rcsb pdb:6GXO|rcsb pdb:6GXP|rcsb pdb:6H4N|rcsb pdb:6H58|rcsb pdb:6HRM|rcsb pdb:6NQB|rcsb pdb:6O9J|rcsb pdb:6O9K|rcsb pdb:6OFX|rcsb pdb:6OG7|rcsb pdb:6ORE|rcsb pdb:6ORL|rcsb pdb:6OST|rcsb pdb:6OT3|rcsb pdb:6OUO|rcsb pdb:6Q97|rcsb pdb:6Q98|rcsb pdb:6Q9A|rcsb pdb:6SZS|rcsb pdb:6TBV|rcsb pdb:6TC3|rcsb pdb:6VWL|rcsb pdb:6VWM|rcsb pdb:6VWN|rcsb pdb:6W6K|rcsb pdb:6W77|rcsb pdb:6W7M|rcsb pdb:6W7N|rcsb pdb:6W7W|rcsb pdb:6WD6|rcsb pdb:6WDB|rcsb pdb:6WDC|rcsb pdb:5LZE|rcsb pdb:5LZF|rcsb pdb:5MDV|rcsb pdb:5MDW|rcsb pdb:5MDY|rcsb pdb:5MDZ|rcsb pdb:5ME0|rcsb pdb:5ME1|rcsb pdb:5MGP|rcsb pdb:5MY1|rcsb pdb:5NO2|rcsb pdb:5NO3|rcsb pdb:5NO4|rcsb pdb:5NP6|rcsb pdb:5NWY|rcsb pdb:5O2R|rcsb pdb:5U4I|rcsb pdb:5U9F|rcsb pdb:5U9G|rcsb pdb:5UYK|rcsb pdb:5UYL|rcsb pdb:5UYM|rcsb pdb:5UYN|rcsb pdb:5UYP|rcsb pdb:5UYQ|rcsb pdb:5UZ4|rcsb pdb:5WDT|rcsb pdb:5WE4|rcsb pdb:5WE6|rcsb pdb:5WFK|rcsb pdb:6BU8|rcsb pdb:6BY1|rcsb pdb:6C4I|rcsb pdb:6ENF|rcsb pdb:6WDD|rcsb pdb:6WDE|rcsb pdb:6WDF|rcsb pdb:6WDG|rcsb pdb:6WDH|rcsb pdb:6WDI|rcsb pdb:6WDJ|rcsb pdb:6WDK|rcsb pdb:6WDL|rcsb pdb:6WDM|rcsb pdb:6WNV|rcsb pdb:6WNW|rcsb pdb:6XE0|rcsb pdb:6XZA|rcsb pdb:6XZB|rcsb pdb:6Y69|rcsb pdb:6ZTL|rcsb pdb:7B5K|rcsb pdb:7D6Z|rcsb pdb:7D80|rcsb pdb:7JSS|rcsb pdb:7JSW|rcsb pdb:7JSZ|rcsb pdb:7JT1|rcsb pdb:7JT2|rcsb pdb:7JT3|refseq:WP_000059466.1|dip:DIP-47909N|uniprotkb:P0ADZ4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9HauA9umxjY245Ou5tq5gCblo7M83333 rogid:OKFq19KikVZaG++ottugczP7/yk83333 intact-crc:FDB04698C7A538FD|rigid:eNiOaJSy/k+jkkiG03qQUGZVpNQ false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0AEK2 uniprotkb:P0AEK2 intact:EBI-370121|uniprotkb:P25716|uniprotkb:P78221|uniprotkb:Q47202|ensemblbacteria:AAC74177|ensemblbacteria:BAA35901 intact:EBI-370121|uniprotkb:P25716|uniprotkb:P78221|uniprotkb:Q47202|ensemblbacteria:AAC74177|ensemblbacteria:BAA35901 psi-mi:fabg_ecoli(display_long)|uniprotkb:fabG(gene name)|psi-mi:fabG(display_short)|uniprotkb:b1093(locus name)|uniprotkb:3-ketoacyl-acyl carrier protein reductase(gene name synonym)|uniprotkb:JW1079(locus name)|uniprotkb:Beta-Ketoacyl-acyl carrier protein reductase(gene name synonym)|uniprotkb:Beta-ketoacyl-ACP reductase(gene name synonym) psi-mi:fabg_ecoli(display_long)|uniprotkb:fabG(gene name)|psi-mi:fabG(display_short)|uniprotkb:b1093(locus name)|uniprotkb:3-ketoacyl-acyl carrier protein reductase(gene name synonym)|uniprotkb:JW1079(locus name)|uniprotkb:Beta-Ketoacyl-acyl carrier protein reductase(gene name synonym)|uniprotkb:Beta-ketoacyl-ACP reductase(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341950|imex:IM-22256-1404 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415611.1|refseq:WP_001008535.1|ensemblbacteria:AAC74177(transcript)|ensemblbacteria:b1093(gene)|ensemblbacteria:BAA35901(gene)|ensemblbacteria:BAA35901(transcript)|go:"GO:0004316"("3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008610"(lipid biosynthetic process)|go:"GO:0009102"(biotin biosynthetic process)|go:"GO:0016616"(oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)|go:"GO:0030497"(fatty acid elongation)|go:"GO:0042802"(identical protein binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|go:"GO:0102131"(obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity)|go:"GO:0102132"(obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity)|interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR011284("3-oxoacyl-(acyl-carrier-protein) reductase")|interpro:IPR020904|interpro:IPR036291|rcsb pdb:1I01|rcsb pdb:1Q7B|rcsb pdb:1Q7C|dip:DIP-31869N|uniprotkb:P0AEK2(identity) refseq:NP_415611.1|refseq:WP_001008535.1|ensemblbacteria:AAC74177(transcript)|ensemblbacteria:b1093(gene)|ensemblbacteria:BAA35901(gene)|ensemblbacteria:BAA35901(transcript)|go:"GO:0004316"("3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity")|go:"GO:0005829"(cytosol)|go:"GO:0006633"(fatty acid biosynthetic process)|go:"GO:0008610"(lipid biosynthetic process)|go:"GO:0009102"(biotin biosynthetic process)|go:"GO:0016616"(oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)|go:"GO:0030497"(fatty acid elongation)|go:"GO:0042802"(identical protein binding)|go:"GO:0046872"(metal ion binding)|go:"GO:0050661"(NADP binding)|go:"GO:0051287"(NAD binding)|go:"GO:0102131"(obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity)|go:"GO:0102132"(obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity)|interpro:IPR002347(Glucose/ribitol dehydrogenase)|interpro:IPR011284("3-oxoacyl-(acyl-carrier-protein) reductase")|interpro:IPR020904|interpro:IPR036291|rcsb pdb:1I01|rcsb pdb:1Q7B|rcsb pdb:1Q7C|dip:DIP-31869N|uniprotkb:P0AEK2(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:q5qFZToS7CcLRivsHsTkJQHc4oo83333 rogid:q5qFZToS7CcLRivsHsTkJQHc4oo83333 intact-crc:1D1CC0CF7D97CCAB|rigid:2by6U0pyErOd0fcKK5hnwufoHk0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A8Z0 uniprotkb:P0AEP9 intact:EBI-553183|uniprotkb:P04379|ensemblbacteria:AAC74335|ensemblbacteria:BAA14785 intact:EBI-9141723|uniprotkb:P52075|uniprotkb:Q2M9L6|ensemblbacteria:AAC76015|ensemblbacteria:BAE77040 psi-mi:ycia_ecoli(display_long)|uniprotkb:Protein P14(gene name synonym)|uniprotkb:yciA(gene name)|psi-mi:yciA(display_short)|uniprotkb:b1253(locus name)|uniprotkb:JW1245(locus name) psi-mi:glcd_ecoli(display_long)|uniprotkb:gox(gene name synonym)|uniprotkb:yghM(gene name synonym)|uniprotkb:JW2946(locus name)|uniprotkb:b2979(locus name)|uniprotkb:glcD(gene name)|psi-mi:glcD(display_short)|uniprotkb:Glycolate dehydrogenase subunit GlcD(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341967|imex:IM-22256-1405 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415769.1|refseq:WP_000108160.1|dip:DIP-35956N|ensemblbacteria:AAC74335(transcript)|ensemblbacteria:b1253(gene)|ensemblbacteria:BAA14785(gene)|ensemblbacteria:BAA14785(transcript)|interpro:IPR029069|interpro:IPR033120|interpro:IPR040170|go:"GO:0005829"(cytosol)|go:"GO:0006631"(fatty acid metabolic process)|go:"GO:0006637"(acyl-CoA metabolic process)|go:"GO:0036042"(long-chain fatty acyl-CoA binding)|go:"GO:0047617"(acyl-CoA hydrolase activity)|interpro:IPR006683(Thioesterase superfamily)|rcsb pdb:2G6S|uniprotkb:P0A8Z0(identity) interpro:IPR004113(FAD-linked oxidase, C-terminal)|interpro:IPR004490(Glycolate oxidase subunit GlcD)|interpro:IPR006094(FAD linked oxidase, N-terminal)|interpro:IPR016164(FAD-linked oxidase-like, C-terminal)|interpro:IPR016166(FAD-binding, type 2)|interpro:IPR016171(Vanillyl-alcohol oxidase, C-terminal subdomain 2)|refseq:NP_417453.1|interpro:IPR036318|refseq:WP_000026117.1|interpro:IPR016167(FAD-binding, type 2, subdomain 1)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0008891"|go:"GO:0009339"(glycolate oxidase complex)|go:"GO:0019154"(glycolate dehydrogenase activity)|go:"GO:0046296"(glycolate catabolic process)|go:"GO:0047809"(D-2-hydroxy-acid dehydrogenase activity)|go:"GO:0071949"(FAD binding)|go:"GO:0005886"(plasma membrane)|ensemblbacteria:AAC76015(transcript)|ensemblbacteria:b2979(gene)|ensemblbacteria:BAE77040(gene)|ensemblbacteria:BAE77040(transcript)|uniprotkb:P0AEP9(identity) psi-mi:"MI:0469"(intact) crc64:EF29C49DBB6B50DA - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:SVAaMVCj1rU6ybpgLN1mGA5+oWo83333 rogid:VAUVxiKiFpftAfybfFvM5bCDIjs83333 intact-crc:D40F223D82DFB6EF|rigid:LuipaFxm56B1KOASCL6Y/7mq++0 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0AEY5 uniprotkb:P0A964 intact:EBI-1131326|uniprotkb:P40717|uniprotkb:Q2M9H2|ensemblbacteria:BAE77084|ensemblbacteria:AAC76064 intact:EBI-1125947|uniprotkb:P07365|ensemblbacteria:AAC74957|ensemblbacteria:BAA15703 psi-mi:mdab_ecoli(display_long)|uniprotkb:Modulator of drug activity B(gene name synonym)|uniprotkb:mdaB(gene name)|psi-mi:mdaB(display_short)|uniprotkb:mda66(gene name synonym)|uniprotkb:b3028(locus name)|uniprotkb:JW2996(locus name) psi-mi:chew_ecoli(display_long)|uniprotkb:cheW(gene name)|psi-mi:cheW(display_short)|uniprotkb:b1887(locus name)|uniprotkb:JW1876(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9341984|imex:IM-22256-1406 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000065430.1|ensemblbacteria:b3028(gene)|ensemblbacteria:BAE77084(gene)|ensemblbacteria:BAE77084(transcript)|go:"GO:0005829"(cytosol)|ensemblbacteria:AAC76064(transcript)|go:"GO:0008753"("NADPH dehydrogenase (quinone) activity")|go:"GO:0050660"(flavin adenine dinucleotide binding)|refseq:NP_417500.1|interpro:IPR003680(Flavodoxin-like fold)|interpro:IPR029039|uniprotkb:P0AEY5(identity) refseq:NP_416401.1|refseq:WP_000147302.1|ensemblbacteria:AAC74957(transcript)|ensemblbacteria:b1887(gene)|ensemblbacteria:BAA15703(gene)|ensemblbacteria:BAA15703(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0007165"(signal transduction)|go:"GO:0009454"(aerotaxis)|go:"GO:0010864"(positive regulation of protein histidine kinase activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0051286"(cell tip)|go:"GO:0051649"(establishment of localization in cell)|go:"GO:0098561"(methyl accepting chemotaxis protein complex)|go:"GO:1901875"(positive regulation of post-translational protein modification)|interpro:IPR002545(CheW-like protein)|interpro:IPR036061|interpro:IPR039315|rcsb pdb:2HO9|rcsb pdb:6S1K|dip:DIP-48236N|uniprotkb:P0A964(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ZlSLQDFipBvGoQe8vm84OPeSBTY83333 rogid:/OGVHY27AnQon70G++eaZIx1JAA83333 intact-crc:B4CE74E0E198F869|rigid:3rs8ELxOWVbLCYSnI6b83kEXS0E false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0A703 uniprotkb:P0AF03 intact:EBI-9275861|uniprotkb:Q46846|uniprotkb:P37184|uniprotkb:Q2M9K4|ensemblbacteria:AAC76027|ensemblbacteria:BAE77052 intact:EBI-554445|uniprotkb:P28694|uniprotkb:Q8KMY3|ensemblbacteria:AAC73120|ensemblbacteria:BAB96587 psi-mi:hybf_ecoli(display_long)|uniprotkb:hybF(gene name)|psi-mi:hybF(display_short)|uniprotkb:Hydrogenase-2 operon protein HybF(gene name synonym)|uniprotkb:JW5493(locus name)|uniprotkb:b2991(locus name)|uniprotkb:Hydrogenase nickel incorporation protein HybF(gene name synonym) psi-mi:mog_ecoli(display_long)|uniprotkb:yaaG(gene name synonym)|uniprotkb:mog(gene name)|psi-mi:mog(display_short)|uniprotkb:chlG(gene name synonym)|uniprotkb:mogA(gene name synonym)|uniprotkb:b0009(locus name)|uniprotkb:JW0008(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342001|imex:IM-22256-1407 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000544953.1|interpro:IPR039002|interpro:IPR000688(Hydrogenase expression/synthesis, HypA)|interpro:IPR020538|refseq:NP_417465.1|ensemblbacteria:AAC76027(transcript)|ensemblbacteria:b2991(gene)|ensemblbacteria:BAE77052(gene)|ensemblbacteria:BAE77052(transcript)|go:"GO:0006464"(cellular protein modification process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0016151"(nickel cation binding)|go:"GO:0051604"(protein maturation)|uniprotkb:P0A703(identity) refseq:NP_414550.1|refseq:WP_001295414.1|dip:DIP-35784N|ensemblbacteria:AAC73120(transcript)|ensemblbacteria:b0009(gene)|ensemblbacteria:BAB96587(gene)|ensemblbacteria:BAB96587(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006777"(Mo-molybdopterin cofactor biosynthetic process)|go:"GO:0032324"(molybdopterin cofactor biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0061598"(molybdopterin adenylyltransferase activity)|interpro:IPR001453(Molybdopterin binding)|interpro:IPR008284(Molybdenum cofactor biosynthesis, conserved site)|interpro:IPR036425|rcsb pdb:1DI6|rcsb pdb:1DI7|uniprotkb:P0AF03(identity) psi-mi:"MI:0469"(intact) - crc64:3610EBDB4BE97872 figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:yYU7d1HR73IeEtHviLX/MIHru6Y83333 rogid:inVYaG73elZeLaKNxjCkeqVKpHE83333 intact-crc:7A80F0D39078DCBF|rigid:IE65SeXzEcgtL3dQxEQGkVSi9vA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0AFU4 uniprotkb:P0AFU4 intact:EBI-1129449|uniprotkb:P21712|uniprotkb:P77512|ensemblbacteria:AAC75607|ensemblbacteria:BAA16462 intact:EBI-1129449|uniprotkb:P21712|uniprotkb:P77512|ensemblbacteria:AAC75607|ensemblbacteria:BAA16462 psi-mi:glrr_ecoli(display_long)|uniprotkb:b2554(locus name)|uniprotkb:JW2538(locus name)|uniprotkb:glrR(gene name)|psi-mi:glrR(display_short)|uniprotkb:yfhA(gene name synonym) psi-mi:glrr_ecoli(display_long)|uniprotkb:b2554(locus name)|uniprotkb:JW2538(locus name)|uniprotkb:glrR(gene name)|psi-mi:glrR(display_short)|uniprotkb:yfhA(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342018|imex:IM-22256-1408 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417049.1|refseq:WP_001295369.1|ensemblbacteria:AAC75607(transcript)|ensemblbacteria:b2554(gene)|ensemblbacteria:BAA16462(gene)|ensemblbacteria:BAA16462(transcript)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0000986"|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-12044N|uniprotkb:P0AFU4(identity) refseq:NP_417049.1|refseq:WP_001295369.1|ensemblbacteria:AAC75607(transcript)|ensemblbacteria:b2554(gene)|ensemblbacteria:BAA16462(gene)|ensemblbacteria:BAA16462(transcript)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0000986"|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-12044N|uniprotkb:P0AFU4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kJ2/YADn4jwNbgcFQ6wTIRhS4Ac83333 rogid:kJ2/YADn4jwNbgcFQ6wTIRhS4Ac83333 intact-crc:223125D8EBA66DD3|rigid:8/QhK3tZaqrYyqO7vvVKWHhotvY false activation domain tag:n-n("MI:0689") dna binding domain tag:c-c("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0AFU4 uniprotkb:P0AFU4 intact:EBI-1129449|uniprotkb:P21712|uniprotkb:P77512|ensemblbacteria:AAC75607|ensemblbacteria:BAA16462 intact:EBI-1129449|uniprotkb:P21712|uniprotkb:P77512|ensemblbacteria:AAC75607|ensemblbacteria:BAA16462 psi-mi:glrr_ecoli(display_long)|uniprotkb:b2554(locus name)|uniprotkb:JW2538(locus name)|uniprotkb:glrR(gene name)|psi-mi:glrR(display_short)|uniprotkb:yfhA(gene name synonym) psi-mi:glrr_ecoli(display_long)|uniprotkb:b2554(locus name)|uniprotkb:JW2538(locus name)|uniprotkb:glrR(gene name)|psi-mi:glrR(display_short)|uniprotkb:yfhA(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342035|imex:IM-22256-1409 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417049.1|refseq:WP_001295369.1|ensemblbacteria:AAC75607(transcript)|ensemblbacteria:b2554(gene)|ensemblbacteria:BAA16462(gene)|ensemblbacteria:BAA16462(transcript)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0000986"|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-12044N|uniprotkb:P0AFU4(identity) refseq:NP_417049.1|refseq:WP_001295369.1|ensemblbacteria:AAC75607(transcript)|ensemblbacteria:b2554(gene)|ensemblbacteria:BAA16462(gene)|ensemblbacteria:BAA16462(transcript)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0000986"|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-12044N|uniprotkb:P0AFU4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kJ2/YADn4jwNbgcFQ6wTIRhS4Ac83333 rogid:kJ2/YADn4jwNbgcFQ6wTIRhS4Ac83333 intact-crc:1E501DEFED990B28|rigid:8/QhK3tZaqrYyqO7vvVKWHhotvY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q06065 uniprotkb:P0AFU4 intact:EBI-1128048|ensemblbacteria:AAC75280|ensemblbacteria:BAA16016 intact:EBI-1129449|uniprotkb:P21712|uniprotkb:P77512|ensemblbacteria:AAC75607|ensemblbacteria:BAA16462 psi-mi:atoc_ecoli(display_long)|uniprotkb:Acetoacetate metabolism regulatory protein(gene name synonym)|uniprotkb:DNA-binding transcriptional regulator AtoC(gene name synonym)|uniprotkb:atoC(gene name)|psi-mi:atoC(display_short)|uniprotkb:az(gene name synonym)|uniprotkb:b2220(locus name)|uniprotkb:JW2214(locus name)|uniprotkb:Ornithine decarboxylase antizyme(gene name synonym) psi-mi:glrr_ecoli(display_long)|uniprotkb:b2554(locus name)|uniprotkb:JW2538(locus name)|uniprotkb:glrR(gene name)|psi-mi:glrR(display_short)|uniprotkb:yfhA(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342052|imex:IM-22256-1410 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416724.1|refseq:WP_000125282.1|ensemblbacteria:AAC75280(transcript)|ensemblbacteria:b2220(gene)|ensemblbacteria:BAA16016(gene)|ensemblbacteria:BAA16016(transcript)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008073"(ornithine decarboxylase inhibitor activity)|go:"GO:0010967"(regulation of polyamine biosynthetic process)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-9190N|uniprotkb:Q06065(identity) refseq:NP_417049.1|refseq:WP_001295369.1|ensemblbacteria:AAC75607(transcript)|ensemblbacteria:b2554(gene)|ensemblbacteria:BAA16462(gene)|ensemblbacteria:BAA16462(transcript)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0000986"|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-12044N|uniprotkb:P0AFU4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:pw8NSD1IcWAb41E6hjtPGjVJF7I83333 rogid:kJ2/YADn4jwNbgcFQ6wTIRhS4Ac83333 intact-crc:B921FF339A8B5B69|rigid:m8D7XuxVD/WJmDdUmlup0sNJ49k false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P06974 uniprotkb:P15070 intact:EBI-560439|ensemblbacteria:AAC75012|ensemblbacteria:BAA15770 intact:EBI-2011987|ensemblbacteria:AAC75013|ensemblbacteria:BAA15771 psi-mi:flim_ecoli(display_long)|uniprotkb:fla AII(gene name synonym)|uniprotkb:fla QII(gene name synonym)|uniprotkb:b1945(locus name)|uniprotkb:fliM(gene name)|psi-mi:fliM(display_short)|uniprotkb:cheC2(gene name synonym)|uniprotkb:JW1929(locus name) psi-mi:flin_ecoli(display_long)|uniprotkb:fliN(gene name)|psi-mi:fliN(display_short)|uniprotkb:flaN(gene name synonym)|uniprotkb:motD(gene name synonym)|uniprotkb:b1946(locus name)|uniprotkb:JW1930(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342069|imex:IM-22256-1411 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416455.1|refseq:WP_001350520.1|dip:DIP-1100N|ensemblbacteria:AAC75012(transcript)|ensemblbacteria:b1945(gene)|ensemblbacteria:BAA15770(gene)|ensemblbacteria:BAA15770(transcript)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0050918"(positive chemotaxis)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR001689(Flagellar motor switch protein FliM)|interpro:IPR028976|interpro:IPR036429|rcsb pdb:1F4V|rcsb pdb:1U8T|rcsb pdb:2B1J|uniprotkb:P06974(identity) refseq:WP_001282101.1|refseq:NP_416456.1|dip:DIP-1101N|ensemblbacteria:AAC75013(transcript)|ensemblbacteria:b1946(gene)|ensemblbacteria:BAA15771(gene)|ensemblbacteria:BAA15771(transcript)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR001172(Flagellar motor switch FliN/Type III secretion HrcQb)|interpro:IPR001543("Surface presentation of antigens (SPOA) protein")|interpro:IPR012826(Flagellar motor switch FliN)|interpro:IPR031576|interpro:IPR036429|uniprotkb:P15070(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:awycBhgM8ftzDaQ3phIHB0Lk6so83333 rogid:9HauA9umxjY245Ou5tq5gCblo7M83333 intact-crc:D2DD1A32F9FE7CAB|rigid:qHKrMMtsTXfqFVE+D5f6rE7sQhg false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P19624 uniprotkb:P19624 intact:EBI-1112869|ensemblbacteria:AAC73163|ensemblbacteria:BAB96619 intact:EBI-1112869|ensemblbacteria:AAC73163|ensemblbacteria:BAB96619 psi-mi:pdxa_ecoli(display_long)|uniprotkb:"4-(phosphohydroxy)-L-threonine dehydrogenase"(gene name synonym)|uniprotkb:pdxA(gene name)|psi-mi:pdxA(display_short)|uniprotkb:b0052(locus name)|uniprotkb:JW0051(locus name) psi-mi:pdxa_ecoli(display_long)|uniprotkb:"4-(phosphohydroxy)-L-threonine dehydrogenase"(gene name synonym)|uniprotkb:pdxA(gene name)|psi-mi:pdxA(display_short)|uniprotkb:b0052(locus name)|uniprotkb:JW0051(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342086|imex:IM-22256-1412 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000241277.1|refseq:NP_414594.1|ensemblbacteria:AAC73163(transcript)|ensemblbacteria:b0052(gene)|ensemblbacteria:BAB96619(gene)|ensemblbacteria:BAB96619(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0042823"(pyridoxal phosphate biosynthetic process)|go:"GO:0050570"(4-hydroxythreonine-4-phosphate dehydrogenase activity)|go:"GO:0050897"(cobalt ion binding)|go:"GO:0051287"(NAD binding)|interpro:IPR005255("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA")|interpro:IPR037510|rcsb pdb:1PS6|rcsb pdb:1PS7|rcsb pdb:1PTM|dip:DIP-10448N|uniprotkb:P19624(identity) refseq:WP_000241277.1|refseq:NP_414594.1|ensemblbacteria:AAC73163(transcript)|ensemblbacteria:b0052(gene)|ensemblbacteria:BAB96619(gene)|ensemblbacteria:BAB96619(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0042823"(pyridoxal phosphate biosynthetic process)|go:"GO:0050570"(4-hydroxythreonine-4-phosphate dehydrogenase activity)|go:"GO:0050897"(cobalt ion binding)|go:"GO:0051287"(NAD binding)|interpro:IPR005255("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA")|interpro:IPR037510|rcsb pdb:1PS6|rcsb pdb:1PS7|rcsb pdb:1PTM|dip:DIP-10448N|uniprotkb:P19624(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mUCGgwbYi58losFSvGvOh5xIXDA83333 rogid:mUCGgwbYi58losFSvGvOh5xIXDA83333 intact-crc:E57B0F7B2AE3B2CE|rigid:V16bqFtXHnf3pWLeafMW4E0hFOE false dna binding domain tag:c-c("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P19624 uniprotkb:P19624 intact:EBI-1112869|ensemblbacteria:AAC73163|ensemblbacteria:BAB96619 intact:EBI-1112869|ensemblbacteria:AAC73163|ensemblbacteria:BAB96619 psi-mi:pdxa_ecoli(display_long)|uniprotkb:"4-(phosphohydroxy)-L-threonine dehydrogenase"(gene name synonym)|uniprotkb:pdxA(gene name)|psi-mi:pdxA(display_short)|uniprotkb:b0052(locus name)|uniprotkb:JW0051(locus name) psi-mi:pdxa_ecoli(display_long)|uniprotkb:"4-(phosphohydroxy)-L-threonine dehydrogenase"(gene name synonym)|uniprotkb:pdxA(gene name)|psi-mi:pdxA(display_short)|uniprotkb:b0052(locus name)|uniprotkb:JW0051(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342103|imex:IM-22256-1413 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000241277.1|refseq:NP_414594.1|ensemblbacteria:AAC73163(transcript)|ensemblbacteria:b0052(gene)|ensemblbacteria:BAB96619(gene)|ensemblbacteria:BAB96619(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0042823"(pyridoxal phosphate biosynthetic process)|go:"GO:0050570"(4-hydroxythreonine-4-phosphate dehydrogenase activity)|go:"GO:0050897"(cobalt ion binding)|go:"GO:0051287"(NAD binding)|interpro:IPR005255("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA")|interpro:IPR037510|rcsb pdb:1PS6|rcsb pdb:1PS7|rcsb pdb:1PTM|dip:DIP-10448N|uniprotkb:P19624(identity) refseq:WP_000241277.1|refseq:NP_414594.1|ensemblbacteria:AAC73163(transcript)|ensemblbacteria:b0052(gene)|ensemblbacteria:BAB96619(gene)|ensemblbacteria:BAB96619(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008615"(pyridoxine biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0042823"(pyridoxal phosphate biosynthetic process)|go:"GO:0050570"(4-hydroxythreonine-4-phosphate dehydrogenase activity)|go:"GO:0050897"(cobalt ion binding)|go:"GO:0051287"(NAD binding)|interpro:IPR005255("Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA")|interpro:IPR037510|rcsb pdb:1PS6|rcsb pdb:1PS7|rcsb pdb:1PTM|dip:DIP-10448N|uniprotkb:P19624(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:mUCGgwbYi58losFSvGvOh5xIXDA83333 rogid:mUCGgwbYi58losFSvGvOh5xIXDA83333 intact-crc:D91A374C2CDCD435|rigid:V16bqFtXHnf3pWLeafMW4E0hFOE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P62617 uniprotkb:P21499 intact:EBI-562321|ensemblbacteria:AAC75788|ensemblbacteria:BAE76823|uniprotkb:P36663|uniprotkb:Q2MA83 intact:EBI-548136|uniprotkb:P76800|uniprotkb:Q2M6C6|ensemblbacteria:AAC77136|ensemblbacteria:BAE78180 psi-mi:ispf_ecoli(display_long)|uniprotkb:ygbB(gene name synonym)|uniprotkb:ispF(gene name)|psi-mi:ispF(display_short)|uniprotkb:mecS(gene name synonym)|uniprotkb:b2746(locus name)|uniprotkb:JW2716(locus name) psi-mi:rnr_ecoli(display_long)|uniprotkb:rnr(gene name)|psi-mi:rnr(display_short)|uniprotkb:vacB(gene name synonym)|uniprotkb:b4179(locus name)|uniprotkb:yjeC(gene name synonym)|uniprotkb:JW5741(locus name)|uniprotkb:Protein VacB(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342120|imex:IM-22256-1414 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAC75788(transcript)|ensemblbacteria:b2746(gene)|ensemblbacteria:BAE76823(gene)|ensemblbacteria:BAE76823(transcript)|go:"GO:0006744"(ubiquinone biosynthetic process)|go:"GO:0008270"(zinc ion binding)|go:"GO:0008685"(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity)|go:"GO:0016114"(terpenoid biosynthetic process)|go:"GO:0019288"(isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway)|go:"GO:0030145"(manganese ion binding)|go:"GO:0042802"(identical protein binding)|go:"GO:0046872"(metal ion binding)|interpro:IPR003526(2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core)|interpro:IPR020555|interpro:IPR036571|rcsb pdb:1GX1|rcsb pdb:1H47|rcsb pdb:1H48|rcsb pdb:1JY8|rcsb pdb:1KNJ|rcsb pdb:1KNK|rcsb pdb:1U3L|rcsb pdb:1U3P|rcsb pdb:1U40|rcsb pdb:1U43|rcsb pdb:1YQN|rcsb pdb:2AMT|rcsb pdb:2GZL|rcsb pdb:3ELC|rcsb pdb:3EOR|rcsb pdb:3ERN|rcsb pdb:3ESJ|rcsb pdb:3FBA|refseq:NP_417226.1|refseq:WP_001219242.1|dip:DIP-48029N|uniprotkb:P62617(identity) refseq:NP_418600.4|refseq:WP_000076332.1|dip:DIP-10733N|ensemblbacteria:AAC77136(transcript)|ensemblbacteria:b4179(gene)|ensemblbacteria:BAE78180(gene)|ensemblbacteria:BAE78180(transcript)|go:"GO:0000175"(3'-5'-exoribonuclease activity)|go:"GO:0003723"(RNA binding)|go:"GO:0004540"(ribonuclease activity)|go:"GO:0005829"(cytosol)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0008859"(exoribonuclease II activity)|go:"GO:0008997"(ribonuclease R activity)|go:"GO:0009409"(response to cold)|go:"GO:0016896"(exoribonuclease activity, producing 5'-phosphomonoesters)|go:"GO:0034458"(3'-5' RNA helicase activity)|go:"GO:0034470"(ncRNA processing)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR003029(S1, RNA binding)|interpro:IPR004476(RNase II and RNase R, bacteria)|interpro:IPR011129(Cold shock protein)|interpro:IPR011805(Ribonuclease R, bacterial)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR013223(Ribonuclease B, OB region N-terminal)|interpro:IPR013668(Ribonuclease R winged-helix domain)|interpro:IPR022966|interpro:IPR022967|interpro:IPR040476|uniprotkb:P21499(identity) psi-mi:"MI:0469"(intact) crc64:9FC5563623A62939 - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:VIWN2R90eokcF8Vb0JKnZOKUOqE83333 rogid:YavP1D5iwNqD+v8MREfh95PlIuc83333 intact-crc:1318F1836B1A6F91|rigid:POKc6dxe1RXfMTIbvgpPYOmfbb4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P22634 uniprotkb:P22634 intact:EBI-554903|uniprotkb:P78133|uniprotkb:Q2M8R2|ensemblbacteria:AAC76949|ensemblbacteria:BAE77344 intact:EBI-554903|uniprotkb:P78133|uniprotkb:Q2M8R2|ensemblbacteria:AAC76949|ensemblbacteria:BAE77344 psi-mi:muri_ecoli(display_long)|uniprotkb:yijA(gene name synonym)|uniprotkb:murI(gene name)|psi-mi:murI(display_short)|uniprotkb:dga(gene name synonym)|uniprotkb:glr(gene name synonym)|uniprotkb:b3967(locus name)|uniprotkb:JW5550(locus name) psi-mi:muri_ecoli(display_long)|uniprotkb:yijA(gene name synonym)|uniprotkb:murI(gene name)|psi-mi:murI(display_short)|uniprotkb:dga(gene name synonym)|uniprotkb:glr(gene name synonym)|uniprotkb:b3967(locus name)|uniprotkb:JW5550(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342137|imex:IM-22256-1415 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000201820.1|refseq:NP_418402.2|dip:DIP-10283N|ensemblbacteria:AAC76949(transcript)|ensemblbacteria:b3967(gene)|ensemblbacteria:BAE77344(gene)|ensemblbacteria:BAE77344(transcript)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008881"(glutamate racemase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0047661"(amino-acid racemase activity)|go:"GO:0071555"(cell wall organization)|interpro:IPR001920(Asp/Glu racemase)|interpro:IPR004391(Glutamate racemase)|interpro:IPR015942(Asp/Glu/hydantoin racemase)|interpro:IPR018187|interpro:IPR033134|rcsb pdb:2JFN|uniprotkb:P22634(identity) refseq:WP_000201820.1|refseq:NP_418402.2|dip:DIP-10283N|ensemblbacteria:AAC76949(transcript)|ensemblbacteria:b3967(gene)|ensemblbacteria:BAE77344(gene)|ensemblbacteria:BAE77344(transcript)|go:"GO:0008360"(regulation of cell shape)|go:"GO:0008881"(glutamate racemase activity)|go:"GO:0009252"(peptidoglycan biosynthetic process)|go:"GO:0047661"(amino-acid racemase activity)|go:"GO:0071555"(cell wall organization)|interpro:IPR001920(Asp/Glu racemase)|interpro:IPR004391(Glutamate racemase)|interpro:IPR015942(Asp/Glu/hydantoin racemase)|interpro:IPR018187|interpro:IPR033134|rcsb pdb:2JFN|uniprotkb:P22634(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:5pCgk5hFAB/8w51+JQ5+bODle0Q83333 rogid:5pCgk5hFAB/8w51+JQ5+bODle0Q83333 intact-crc:EF1455B0415A02BC|rigid:S/fJGGkiWB+kh4cBzTF+ZFwWhvU false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P25798 uniprotkb:P0ABZ1 intact:EBI-1126492|uniprotkb:P76324|uniprotkb:P76914|ensemblbacteria:AAC75005|ensemblbacteria:BAA15763 intact:EBI-1126524|uniprotkb:P31067|uniprotkb:P76915|ensemblbacteria:AAC75006|ensemblbacteria:BAA15764 psi-mi:flif_ecoli(display_long)|uniprotkb:fliF(gene name)|psi-mi:fliF(display_short)|uniprotkb:fla AII.1(gene name synonym)|uniprotkb:fla BI(gene name synonym)|uniprotkb:b1938(locus name)|uniprotkb:JW1922(locus name) psi-mi:flig_ecoli(display_long)|uniprotkb:fliG(gene name)|psi-mi:fliG(display_short)|uniprotkb:fla AII.2(gene name synonym)|uniprotkb:fla BII(gene name synonym)|uniprotkb:b1939(locus name)|uniprotkb:JW1923(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342154|imex:IM-22256-1416 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416448.1|refseq:WP_000994427.1|ensemblbacteria:AAC75005(transcript)|ensemblbacteria:b1938(gene)|ensemblbacteria:BAA15763(gene)|ensemblbacteria:BAA15763(transcript)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0009431"(bacterial-type flagellum basal body, MS ring)|go:"GO:0016021"(integral component of membrane)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR000067(Flagellar FliF M-ring protein)|interpro:IPR006182(Secretory protein YscJ/FliF)|interpro:IPR013556(Flagellar M-ring C-terminal)|interpro:IPR043427|dip:DIP-401N|uniprotkb:P25798(identity) refseq:NP_416449.1|refseq:WP_000067950.1|go:"GO:0009425"(bacterial-type flagellum basal body)|go:"GO:0042802"(identical protein binding)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|interpro:IPR000090(Flagellar motor switch protein FliG)|interpro:IPR011002(Flagellar motor switch protein FliG, alpha-helical)|interpro:IPR023087|interpro:IPR028263|interpro:IPR032779|ensemblbacteria:AAC75006(transcript)|ensemblbacteria:b1939(gene)|ensemblbacteria:BAA15764(gene)|ensemblbacteria:BAA15764(transcript)|go:"GO:0003774"(cytoskeletal motor activity)|go:"GO:0005886"(plasma membrane)|go:"GO:0006935"(chemotaxis)|dip:DIP-408N|uniprotkb:P0ABZ1(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:EF9TNrmgHQCRZcb/tx/H4SX0HYc83333 rogid:r1raGXtXzQzGfBIo3fk+Zijhx6w83333 intact-crc:03BC98B8771F0E38|rigid:xN5qKdwlQJyBRZVvDktrVsSbWNg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P28638 uniprotkb:P28638 intact:EBI-554514|uniprotkb:Q2M8V3|ensemblbacteria:AAC76294|ensemblbacteria:BAE77303 intact:EBI-554514|uniprotkb:Q2M8V3|ensemblbacteria:AAC76294|ensemblbacteria:BAE77303 psi-mi:yhdj_ecoli(display_long)|uniprotkb:yhdJ(gene name)|psi-mi:yhdJ(display_short)|uniprotkb:b3262(locus name)|uniprotkb:JW5543(locus name) psi-mi:yhdj_ecoli(display_long)|uniprotkb:yhdJ(gene name)|psi-mi:yhdJ(display_short)|uniprotkb:b3262(locus name)|uniprotkb:JW5543(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342171|imex:IM-22256-1417 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417728.4|refseq:WP_001258895.1|dip:DIP-12296N|ensemblbacteria:AAC76294(transcript)|ensemblbacteria:b3262(gene)|ensemblbacteria:BAE77303(gene)|ensemblbacteria:BAE77303(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|interpro:IPR029063|uniprotkb:P28638(identity) refseq:NP_417728.4|refseq:WP_001258895.1|dip:DIP-12296N|ensemblbacteria:AAC76294(transcript)|ensemblbacteria:b3262(gene)|ensemblbacteria:BAE77303(gene)|ensemblbacteria:BAE77303(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|interpro:IPR029063|uniprotkb:P28638(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7UaZTka6X88HL/D//rz+mzeinbQ83333 rogid:7UaZTka6X88HL/D//rz+mzeinbQ83333 intact-crc:A6B9954E22896406|rigid:0LPyvCyURhsP3DzRVSM+C12Zcug false activation domain tag:n-n("MI:0689") dna binding domain tag:c-c("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P28638 uniprotkb:P28638 intact:EBI-554514|uniprotkb:Q2M8V3|ensemblbacteria:AAC76294|ensemblbacteria:BAE77303 intact:EBI-554514|uniprotkb:Q2M8V3|ensemblbacteria:AAC76294|ensemblbacteria:BAE77303 psi-mi:yhdj_ecoli(display_long)|uniprotkb:yhdJ(gene name)|psi-mi:yhdJ(display_short)|uniprotkb:b3262(locus name)|uniprotkb:JW5543(locus name) psi-mi:yhdj_ecoli(display_long)|uniprotkb:yhdJ(gene name)|psi-mi:yhdJ(display_short)|uniprotkb:b3262(locus name)|uniprotkb:JW5543(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342188|imex:IM-22256-1418 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417728.4|refseq:WP_001258895.1|dip:DIP-12296N|ensemblbacteria:AAC76294(transcript)|ensemblbacteria:b3262(gene)|ensemblbacteria:BAE77303(gene)|ensemblbacteria:BAE77303(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|interpro:IPR029063|uniprotkb:P28638(identity) refseq:NP_417728.4|refseq:WP_001258895.1|dip:DIP-12296N|ensemblbacteria:AAC76294(transcript)|ensemblbacteria:b3262(gene)|ensemblbacteria:BAE77303(gene)|ensemblbacteria:BAE77303(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008168"(methyltransferase activity)|go:"GO:0008170"(N-methyltransferase activity)|go:"GO:0009007"("site-specific DNA-methyltransferase (adenine-specific) activity")|interpro:IPR001091("Site-specific DNA-methyltransferase (cytosine-N4-specific)")|interpro:IPR002052(N-6 adenine-specific DNA methylase, conserved site)|interpro:IPR002941(DNA methylase N-4/N-6)|interpro:IPR029063|uniprotkb:P28638(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:7UaZTka6X88HL/D//rz+mzeinbQ83333 rogid:7UaZTka6X88HL/D//rz+mzeinbQ83333 intact-crc:9AD8AD7924B602FD|rigid:0LPyvCyURhsP3DzRVSM+C12Zcug false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P29744 uniprotkb:P0A8A2 intact:EBI-1121886|ensemblbacteria:AAC74167|ensemblbacteria:BAA35892 intact:EBI-545240|uniprotkb:P76351|uniprotkb:P94751|ensemblbacteria:AAC75047|ensemblbacteria:BAA15803 psi-mi:flgl_ecoli(display_long)|uniprotkb:JW1070(locus name)|uniprotkb:Hook-filament junction protein(gene name synonym)|uniprotkb:flgL(gene name)|psi-mi:flgL(display_short)|uniprotkb:flaT(gene name synonym)|uniprotkb:flaU(gene name synonym)|uniprotkb:b1083(locus name) psi-mi:yeen_ecoli(display_long)|uniprotkb:yeeN(gene name)|psi-mi:yeeN(display_short)|uniprotkb:b1983(locus name)|uniprotkb:JW1964(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342205|imex:IM-22256-1419 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415601.1|interpro:IPR013384(Flagellar hook-associated protein 3)|interpro:IPR001029(Flagellin, C-terminal)|refseq:WP_001212782.1|ensemblbacteria:AAC74167(transcript)|ensemblbacteria:b1083(gene)|ensemblbacteria:BAA35892(gene)|ensemblbacteria:BAA35892(transcript)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005576"(extracellular region)|go:"GO:0009424"(bacterial-type flagellum hook)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|uniprotkb:P29744(identity) refseq:NP_416490.1|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006355"(regulation of transcription, DNA-templated)|interpro:IPR002876(Protein of unknown function DUF28)|interpro:IPR017856(Integrase, N-terminal zinc-binding domain-like)|interpro:IPR026562|interpro:IPR026564|interpro:IPR029072|ensemblbacteria:BAA15803(transcript)|ensemblbacteria:AAC75047(transcript)|ensemblbacteria:b1983(gene)|ensemblbacteria:BAA15803(gene)|refseq:WP_000532923.1|dip:DIP-36184N|uniprotkb:P0A8A2(identity) psi-mi:"MI:0469"(intact) - crc64:F467DCB73A8FF7CF figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:HUGVX1IxIi07fO4ryQh1A5YQNC483333 rogid:8gSifjW60vd6KlFqeyfuw82vvxU83333 intact-crc:35CF9E979AA72FE6|rigid:PQHwZLW3+ghlYMwSU9WAHG1YOZo false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P31663 uniprotkb:P31663 intact:EBI-545354|uniprotkb:Q2MCG4|ensemblbacteria:AAC73244|ensemblbacteria:BAE76042 intact:EBI-545354|uniprotkb:Q2MCG4|ensemblbacteria:AAC73244|ensemblbacteria:BAE76042 psi-mi:panc_ecoli(display_long)|uniprotkb:panC(gene name)|psi-mi:panC(display_short)|uniprotkb:b0133(locus name)|uniprotkb:Pantoate--beta-alanine ligase(gene name synonym)|uniprotkb:Pantoate-activating enzyme(gene name synonym)|uniprotkb:JW0129(locus name) psi-mi:panc_ecoli(display_long)|uniprotkb:panC(gene name)|psi-mi:panC(display_short)|uniprotkb:b0133(locus name)|uniprotkb:Pantoate--beta-alanine ligase(gene name synonym)|uniprotkb:Pantoate-activating enzyme(gene name synonym)|uniprotkb:JW0129(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342222|imex:IM-22256-1420 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_414675.1|refseq:WP_000905383.1|interpro:IPR042176|rcsb pdb:1IHO|rcsb pdb:3GUZ|ensemblbacteria:AAC73244(transcript)|ensemblbacteria:b0133(gene)|ensemblbacteria:BAE76042(gene)|ensemblbacteria:BAE76042(transcript)|go:"GO:0004592"(pantoate-beta-alanine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0015940"(pantothenate biosynthetic process)|go:"GO:0042802"(identical protein binding)|interpro:IPR003721(Pantoate-beta-alanine ligase)|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|mint:P31663|dip:DIP-10437N|uniprotkb:P31663(identity) refseq:NP_414675.1|refseq:WP_000905383.1|interpro:IPR042176|rcsb pdb:1IHO|rcsb pdb:3GUZ|ensemblbacteria:AAC73244(transcript)|ensemblbacteria:b0133(gene)|ensemblbacteria:BAE76042(gene)|ensemblbacteria:BAE76042(transcript)|go:"GO:0004592"(pantoate-beta-alanine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0015940"(pantothenate biosynthetic process)|go:"GO:0042802"(identical protein binding)|interpro:IPR003721(Pantoate-beta-alanine ligase)|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|mint:P31663|dip:DIP-10437N|uniprotkb:P31663(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kUPiypPU1+LXQ8sN50suNnSs1gI83333 rogid:kUPiypPU1+LXQ8sN50suNnSs1gI83333 intact-crc:884E60769135C7E2|rigid:/dsv7D7bp4kNj3MbvtaP9EPrCVE false dna binding domain tag:c-c("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P31663 uniprotkb:P31663 intact:EBI-545354|uniprotkb:Q2MCG4|ensemblbacteria:AAC73244|ensemblbacteria:BAE76042 intact:EBI-545354|uniprotkb:Q2MCG4|ensemblbacteria:AAC73244|ensemblbacteria:BAE76042 psi-mi:panc_ecoli(display_long)|uniprotkb:panC(gene name)|psi-mi:panC(display_short)|uniprotkb:b0133(locus name)|uniprotkb:Pantoate--beta-alanine ligase(gene name synonym)|uniprotkb:Pantoate-activating enzyme(gene name synonym)|uniprotkb:JW0129(locus name) psi-mi:panc_ecoli(display_long)|uniprotkb:panC(gene name)|psi-mi:panC(display_short)|uniprotkb:b0133(locus name)|uniprotkb:Pantoate--beta-alanine ligase(gene name synonym)|uniprotkb:Pantoate-activating enzyme(gene name synonym)|uniprotkb:JW0129(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342239|imex:IM-22256-1421 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_414675.1|refseq:WP_000905383.1|interpro:IPR042176|rcsb pdb:1IHO|rcsb pdb:3GUZ|ensemblbacteria:AAC73244(transcript)|ensemblbacteria:b0133(gene)|ensemblbacteria:BAE76042(gene)|ensemblbacteria:BAE76042(transcript)|go:"GO:0004592"(pantoate-beta-alanine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0015940"(pantothenate biosynthetic process)|go:"GO:0042802"(identical protein binding)|interpro:IPR003721(Pantoate-beta-alanine ligase)|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|mint:P31663|dip:DIP-10437N|uniprotkb:P31663(identity) refseq:NP_414675.1|refseq:WP_000905383.1|interpro:IPR042176|rcsb pdb:1IHO|rcsb pdb:3GUZ|ensemblbacteria:AAC73244(transcript)|ensemblbacteria:b0133(gene)|ensemblbacteria:BAE76042(gene)|ensemblbacteria:BAE76042(transcript)|go:"GO:0004592"(pantoate-beta-alanine ligase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0015940"(pantothenate biosynthetic process)|go:"GO:0042802"(identical protein binding)|interpro:IPR003721(Pantoate-beta-alanine ligase)|interpro:IPR004821(Cytidyltransferase-related)|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|mint:P31663|dip:DIP-10437N|uniprotkb:P31663(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kUPiypPU1+LXQ8sN50suNnSs1gI83333 rogid:kUPiypPU1+LXQ8sN50suNnSs1gI83333 intact-crc:B42F5841970AA119|rigid:/dsv7D7bp4kNj3MbvtaP9EPrCVE false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P32055 uniprotkb:P32055 intact:EBI-1127315|uniprotkb:P76382|ensemblbacteria:AAC75113|ensemblbacteria:BAA15908 intact:EBI-1127315|uniprotkb:P76382|ensemblbacteria:AAC75113|ensemblbacteria:BAA15908 psi-mi:fcl_ecoli(display_long)|uniprotkb:yefB(gene name synonym)|uniprotkb:GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase(gene name synonym)|uniprotkb:fcl(gene name)|psi-mi:fcl(display_short)|uniprotkb:wcaG(gene name synonym)|uniprotkb:b2052(locus name)|uniprotkb:JW2037(locus name) psi-mi:fcl_ecoli(display_long)|uniprotkb:yefB(gene name synonym)|uniprotkb:GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase(gene name synonym)|uniprotkb:fcl(gene name)|psi-mi:fcl(display_short)|uniprotkb:wcaG(gene name synonym)|uniprotkb:b2052(locus name)|uniprotkb:JW2037(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342256|imex:IM-22256-1422 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416556.1|interpro:IPR001509(NAD-dependent epimerase/dehydratase)|rcsb pdb:1BSV|rcsb pdb:1BWS|rcsb pdb:1E6U|rcsb pdb:1E7Q|rcsb pdb:1E7R|rcsb pdb:1E7S|rcsb pdb:1FXS|rcsb pdb:1GFS|interpro:IPR028614|refseq:WP_000043654.1|ensemblbacteria:AAC75113(transcript)|ensemblbacteria:b2052(gene)|ensemblbacteria:BAA15908(gene)|ensemblbacteria:BAA15908(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0009242"(colanic acid biosynthetic process)|go:"GO:0016853"(isomerase activity)|go:"GO:0042351"('de novo' GDP-L-fucose biosynthetic process)|go:"GO:0050577"(GDP-L-fucose synthase activity)|go:"GO:0070401"(NADP+ binding)|interpro:IPR036291|uniprotkb:P32055(identity) refseq:NP_416556.1|interpro:IPR001509(NAD-dependent epimerase/dehydratase)|rcsb pdb:1BSV|rcsb pdb:1BWS|rcsb pdb:1E6U|rcsb pdb:1E7Q|rcsb pdb:1E7R|rcsb pdb:1E7S|rcsb pdb:1FXS|rcsb pdb:1GFS|interpro:IPR028614|refseq:WP_000043654.1|ensemblbacteria:AAC75113(transcript)|ensemblbacteria:b2052(gene)|ensemblbacteria:BAA15908(gene)|ensemblbacteria:BAA15908(transcript)|go:"GO:0005737"(cytoplasm)|go:"GO:0009242"(colanic acid biosynthetic process)|go:"GO:0016853"(isomerase activity)|go:"GO:0042351"('de novo' GDP-L-fucose biosynthetic process)|go:"GO:0050577"(GDP-L-fucose synthase activity)|go:"GO:0070401"(NADP+ binding)|interpro:IPR036291|uniprotkb:P32055(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:9MYyiXixGAulpygdwqe/LGONgAY83333 rogid:9MYyiXixGAulpygdwqe/LGONgAY83333 intact-crc:FFE8320A3C2034E8|rigid:rmPUnhpSIfhvihTyJ031tkH9dOA false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P33358 uniprotkb:P0A9G4 intact:EBI-1127668|uniprotkb:Q2MAV3|ensemblbacteria:AAC75188|ensemblbacteria:BAE76603 intact:EBI-1117686|uniprotkb:P77565|uniprotkb:Q2MBU0|ensemblbacteria:AAC73589|ensemblbacteria:BAE76266 psi-mi:mlra_ecoli(display_long)|uniprotkb:yehV(gene name synonym)|uniprotkb:MerR-like regulator A(gene name synonym)|uniprotkb:mlrA(gene name)|psi-mi:mlrA(display_short)|uniprotkb:b2127(locus name)|uniprotkb:JW2115(locus name) psi-mi:cuer_ecoli(display_long)|uniprotkb:copR(gene name synonym)|uniprotkb:ybbI(gene name synonym)|uniprotkb:Copper efflux regulator(gene name synonym)|uniprotkb:Copper export regulator(gene name synonym)|uniprotkb:cueR(gene name)|psi-mi:cueR(display_short)|uniprotkb:b0487(locus name)|uniprotkb:JW0476(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342273|imex:IM-22256-1423 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416631.1|interpro:IPR009061(Putative DNA binding)|interpro:IPR000551(Bacterial regulatory protein, MerR)|refseq:WP_001240401.1|ensemblbacteria:b2127(gene)|ensemblbacteria:BAE76603(gene)|ensemblbacteria:BAE76603(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|ensemblbacteria:AAC75188(transcript)|mint:P33358|uniprotkb:P33358(identity) refseq:NP_415020.1|ensemblbacteria:AAC73589(transcript)|ensemblbacteria:b0487(gene)|ensemblbacteria:BAE76266(gene)|ensemblbacteria:BAE76266(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0000986"|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005507"(copper ion binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR000551(Bacterial regulatory protein, MerR)|interpro:IPR009061(Putative DNA binding)|interpro:IPR011789("Cu(I)-responsive transcriptional regulator")|rcsb pdb:1Q05|rcsb pdb:1Q06|rcsb pdb:1Q07|rcsb pdb:4WLS|rcsb pdb:4WLW|rcsb pdb:6LDI|rcsb pdb:6XH7|rcsb pdb:6XH8|rcsb pdb:7C17|refseq:WP_001026747.1|dip:DIP-51206N|uniprotkb:P0A9G4(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:gzJgKnruazPYG9CIb46TIMYA9pg83333 rogid:4n/BzYuYdNy5cKz0kTjgB/GSblk83333 intact-crc:1D4FE3F47380797F|rigid:l6z3nomx+3Aibc6mccKBkkfObjk false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P37128 uniprotkb:P0AAI9 intact:EBI-1120507|uniprotkb:P77255|ensemblbacteria:AAC75520|ensemblbacteria:BAA16341 intact:EBI-1117676|uniprotkb:P25715|ensemblbacteria:AAC74176|ensemblbacteria:BAA35900 psi-mi:nudk_ecoli(display_long)|uniprotkb:GDP-mannose hydrolase(gene name synonym)|uniprotkb:GDPMK(gene name synonym)|uniprotkb:nudK(gene name)|psi-mi:nudK(display_short)|uniprotkb:b2467(locus name)|uniprotkb:JW2451(locus name)|uniprotkb:yffH(gene name synonym) psi-mi:fabd_ecoli(display_long)|uniprotkb:fabD(gene name)|psi-mi:fabD(display_short)|uniprotkb:tfpA(gene name synonym)|uniprotkb:b1092(locus name)|uniprotkb:JW1078(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342290|imex:IM-22256-1424 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001300814.1|ensemblbacteria:AAC75520(transcript)|ensemblbacteria:b2467(gene)|ensemblbacteria:BAA16341(gene)|ensemblbacteria:BAA16341(transcript)|go:"GO:0000287"(magnesium ion binding)|go:"GO:0005829"(cytosol)|go:"GO:0006753"(nucleoside phosphate metabolic process)|go:"GO:0019693"(ribose phosphate metabolic process)|go:"GO:0052751"(GDP-mannose hydrolase activity)|refseq:NP_416962.1|interpro:IPR004385(Nucleoside diphosphate pyrophosphatase)|interpro:IPR000086(NUDIX hydrolase, core)|interpro:IPR015797(NUDIX)|rcsb pdb:1VIU|rcsb pdb:3O52|rcsb pdb:3O61|rcsb pdb:3O69|rcsb pdb:3O6Z|uniprotkb:P37128(identity) refseq:NP_415610.1|ensemblbacteria:AAC74176(transcript)|ensemblbacteria:b1092(gene)|ensemblbacteria:BAA35900(gene)|ensemblbacteria:BAA35900(transcript)|go:"GO:0004314"([acyl-carrier-protein] S-malonyltransferase activity)|go:"GO:0005829"(cytosol)|go:"GO:0006633"(fatty acid biosynthetic process)|interpro:IPR001227(Acyl transferase region)|interpro:IPR014043(Acyl transferase)|interpro:IPR016035(Acyl transferase/acyl hydrolase/lysophospholipase)|interpro:IPR016036(Malonyl-CoA ACP transacylase, ACP-binding)|interpro:IPR024925|rcsb pdb:1MLA|rcsb pdb:2G1H|rcsb pdb:2G2O|rcsb pdb:2G2Y|rcsb pdb:2G2Z|rcsb pdb:6U0J|interpro:IPR004410(Malonyl CoA-acyl carrier protein transacylase)|refseq:WP_000191372.1|dip:DIP-47923N|uniprotkb:P0AAI9(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:4wtYQXLQG56Ol70Ikw3YFKkCjWE83333 rogid:djjtoGF8l40uAi+2Zf4Dto9g5ks83333 intact-crc:A5FD32D78EA4A71B|rigid:sOc9KE9Uj0LfPt4nLSrXGtMO5d0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P37666 uniprotkb:P37666 intact:EBI-562547|ensemblbacteria:AAC76577|ensemblbacteria:BAE77742|uniprotkb:Q2M7L4 intact:EBI-562547|ensemblbacteria:AAC76577|ensemblbacteria:BAE77742|uniprotkb:Q2M7L4 psi-mi:ghrb_ecoli(display_long)|uniprotkb:tkrA(gene name synonym)|uniprotkb:yiaE(gene name synonym)|uniprotkb:2-ketogluconate reductase(gene name synonym)|uniprotkb:2-ketoaldonate reductase(gene name synonym)|uniprotkb:ghrB(gene name)|psi-mi:ghrB(display_short)|uniprotkb:b3553(locus name)|uniprotkb:JW5656(locus name) psi-mi:ghrb_ecoli(display_long)|uniprotkb:tkrA(gene name synonym)|uniprotkb:yiaE(gene name synonym)|uniprotkb:2-ketogluconate reductase(gene name synonym)|uniprotkb:2-ketoaldonate reductase(gene name synonym)|uniprotkb:ghrB(gene name)|psi-mi:ghrB(display_short)|uniprotkb:b3553(locus name)|uniprotkb:JW5656(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342307|imex:IM-22256-1425 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAC76577(transcript)|ensemblbacteria:b3553(gene)|ensemblbacteria:BAE77742(gene)|ensemblbacteria:BAE77742(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0008465"(glycerate dehydrogenase activity)|go:"GO:0008873"(gluconate 2-dehydrogenase activity)|go:"GO:0016618"(hydroxypyruvate reductase activity)|go:"GO:0019521"(D-gluconate metabolic process)|go:"GO:0030267"("glyoxylate reductase (NADP+) activity")|go:"GO:0046181"(ketogluconate catabolic process)|go:"GO:0051287"(NAD binding)|interpro:IPR006139(D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region)|interpro:IPR006140(D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding)|interpro:IPR023756|interpro:IPR029753|interpro:IPR036291|refseq:NP_418009.2|refseq:WP_000805038.1|dip:DIP-10997N|uniprotkb:P37666(identity) ensemblbacteria:AAC76577(transcript)|ensemblbacteria:b3553(gene)|ensemblbacteria:BAE77742(gene)|ensemblbacteria:BAE77742(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0008465"(glycerate dehydrogenase activity)|go:"GO:0008873"(gluconate 2-dehydrogenase activity)|go:"GO:0016618"(hydroxypyruvate reductase activity)|go:"GO:0019521"(D-gluconate metabolic process)|go:"GO:0030267"("glyoxylate reductase (NADP+) activity")|go:"GO:0046181"(ketogluconate catabolic process)|go:"GO:0051287"(NAD binding)|interpro:IPR006139(D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region)|interpro:IPR006140(D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding)|interpro:IPR023756|interpro:IPR029753|interpro:IPR036291|refseq:NP_418009.2|refseq:WP_000805038.1|dip:DIP-10997N|uniprotkb:P37666(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+vHXIxWTTvvzE5x4RtFzQE+63to83333 rogid:+vHXIxWTTvvzE5x4RtFzQE+63to83333 intact-crc:947A7350B2DE1652|rigid:yiIDdb2k7HKpNbtya/VwXqOkCCg false activation domain tag:n-n("MI:0689") dna binding domain tag:c-c("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P37666 uniprotkb:P37666 intact:EBI-562547|ensemblbacteria:AAC76577|ensemblbacteria:BAE77742|uniprotkb:Q2M7L4 intact:EBI-562547|ensemblbacteria:AAC76577|ensemblbacteria:BAE77742|uniprotkb:Q2M7L4 psi-mi:ghrb_ecoli(display_long)|uniprotkb:tkrA(gene name synonym)|uniprotkb:yiaE(gene name synonym)|uniprotkb:2-ketogluconate reductase(gene name synonym)|uniprotkb:2-ketoaldonate reductase(gene name synonym)|uniprotkb:ghrB(gene name)|psi-mi:ghrB(display_short)|uniprotkb:b3553(locus name)|uniprotkb:JW5656(locus name) psi-mi:ghrb_ecoli(display_long)|uniprotkb:tkrA(gene name synonym)|uniprotkb:yiaE(gene name synonym)|uniprotkb:2-ketogluconate reductase(gene name synonym)|uniprotkb:2-ketoaldonate reductase(gene name synonym)|uniprotkb:ghrB(gene name)|psi-mi:ghrB(display_short)|uniprotkb:b3553(locus name)|uniprotkb:JW5656(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342324|imex:IM-22256-1426 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAC76577(transcript)|ensemblbacteria:b3553(gene)|ensemblbacteria:BAE77742(gene)|ensemblbacteria:BAE77742(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0008465"(glycerate dehydrogenase activity)|go:"GO:0008873"(gluconate 2-dehydrogenase activity)|go:"GO:0016618"(hydroxypyruvate reductase activity)|go:"GO:0019521"(D-gluconate metabolic process)|go:"GO:0030267"("glyoxylate reductase (NADP+) activity")|go:"GO:0046181"(ketogluconate catabolic process)|go:"GO:0051287"(NAD binding)|interpro:IPR006139(D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region)|interpro:IPR006140(D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding)|interpro:IPR023756|interpro:IPR029753|interpro:IPR036291|refseq:NP_418009.2|refseq:WP_000805038.1|dip:DIP-10997N|uniprotkb:P37666(identity) ensemblbacteria:AAC76577(transcript)|ensemblbacteria:b3553(gene)|ensemblbacteria:BAE77742(gene)|ensemblbacteria:BAE77742(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0008465"(glycerate dehydrogenase activity)|go:"GO:0008873"(gluconate 2-dehydrogenase activity)|go:"GO:0016618"(hydroxypyruvate reductase activity)|go:"GO:0019521"(D-gluconate metabolic process)|go:"GO:0030267"("glyoxylate reductase (NADP+) activity")|go:"GO:0046181"(ketogluconate catabolic process)|go:"GO:0051287"(NAD binding)|interpro:IPR006139(D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region)|interpro:IPR006140(D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding)|interpro:IPR023756|interpro:IPR029753|interpro:IPR036291|refseq:NP_418009.2|refseq:WP_000805038.1|dip:DIP-10997N|uniprotkb:P37666(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:+vHXIxWTTvvzE5x4RtFzQE+63to83333 rogid:+vHXIxWTTvvzE5x4RtFzQE+63to83333 intact-crc:A81B4B67B4E170A9|rigid:yiIDdb2k7HKpNbtya/VwXqOkCCg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P45759 uniprotkb:P45759 intact:EBI-1132437|uniprotkb:Q2M6Z1|ensemblbacteria:AAC76351|ensemblbacteria:BAE77965 intact:EBI-1132437|uniprotkb:Q2M6Z1|ensemblbacteria:AAC76351|ensemblbacteria:BAE77965 psi-mi:gspe_ecoli(display_long)|uniprotkb:yheG(gene name synonym)|uniprotkb:Type II traffic warden ATPase(gene name synonym)|uniprotkb:gspE(gene name)|psi-mi:gspE(display_short)|uniprotkb:b3326(locus name)|uniprotkb:JW3288(locus name)|uniprotkb:Putative general secretion pathway protein E(gene name synonym) psi-mi:gspe_ecoli(display_long)|uniprotkb:yheG(gene name synonym)|uniprotkb:Type II traffic warden ATPase(gene name synonym)|uniprotkb:gspE(gene name)|psi-mi:gspE(display_short)|uniprotkb:b3326(locus name)|uniprotkb:JW3288(locus name)|uniprotkb:Putative general secretion pathway protein E(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342341|imex:IM-22256-1427 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_001219894.1|refseq:NP_417785.1|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013369(Type II secretion system gspE)|interpro:IPR001482(Type II secretion system protein E)|interpro:IPR027417|ensemblbacteria:AAC76351(transcript)|ensemblbacteria:b3326(gene)|ensemblbacteria:BAE77965(gene)|ensemblbacteria:BAE77965(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0008564"(protein-exporting ATPase activity)|go:"GO:0015627"(type II protein secretion system complex)|go:"GO:0015628"(protein secretion by the type II secretion system)|go:"GO:0046872"(metal ion binding)|interpro:IPR037257|uniprotkb:P45759(identity) refseq:WP_001219894.1|refseq:NP_417785.1|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR013369(Type II secretion system gspE)|interpro:IPR001482(Type II secretion system protein E)|interpro:IPR027417|ensemblbacteria:AAC76351(transcript)|ensemblbacteria:b3326(gene)|ensemblbacteria:BAE77965(gene)|ensemblbacteria:BAE77965(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0008564"(protein-exporting ATPase activity)|go:"GO:0015627"(type II protein secretion system complex)|go:"GO:0015628"(protein secretion by the type II secretion system)|go:"GO:0046872"(metal ion binding)|interpro:IPR037257|uniprotkb:P45759(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:eMRCXWcI5KopdlN7kVyhcNEQCuY83333 rogid:eMRCXWcI5KopdlN7kVyhcNEQCuY83333 intact-crc:ABFFF86FD6C8FA99|rigid:qIjv9OKrTz+S4aDpZa/pAcHfWEg false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P52097 uniprotkb:P52097 intact:EBI-556745|ensemblbacteria:AAC73299|ensemblbacteria:BAA77863 intact:EBI-556745|ensemblbacteria:AAC73299|ensemblbacteria:BAA77863 psi-mi:tils_ecoli(display_long)|uniprotkb:yaeN(gene name synonym)|uniprotkb:"tRNA(Ile)-lysidine synthetase"(gene name synonym)|uniprotkb:"tRNA(Ile)-2-lysyl-cytidine synthase"(gene name synonym)|uniprotkb:tilS(gene name)|psi-mi:tilS(display_short)|uniprotkb:mesJ(gene name synonym)|uniprotkb:b0188(locus name)|uniprotkb:JW0183(locus name) psi-mi:tils_ecoli(display_long)|uniprotkb:yaeN(gene name synonym)|uniprotkb:"tRNA(Ile)-lysidine synthetase"(gene name synonym)|uniprotkb:"tRNA(Ile)-2-lysyl-cytidine synthase"(gene name synonym)|uniprotkb:tilS(gene name)|psi-mi:tilS(display_short)|uniprotkb:mesJ(gene name synonym)|uniprotkb:b0188(locus name)|uniprotkb:JW0183(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342358|imex:IM-22256-1428 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_414730.1|refseq:WP_000176549.1|dip:DIP-10190N|ensemblbacteria:AAC73299(transcript)|ensemblbacteria:b0188(gene)|ensemblbacteria:BAA77863(gene)|ensemblbacteria:BAA77863(transcript)|go:"GO:0002136"(tRNA wobble base lysidine biosynthesis)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006400"(tRNA modification)|go:"GO:0032267"("tRNA(Ile)-lysidine synthase activity")|go:"GO:0042802"(identical protein binding)|interpro:IPR011063(PP-loop)|interpro:IPR012094(Cell cycle control PP-loop ATPase MesJ/YaeO)|interpro:IPR012795("Lysidine-tRNA(Ile) synthetase, N-terminal")|interpro:IPR012796("Lysidine-tRNA(Ile) synthetase, C-terminal")|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR015262(Protein of unkown function DUF1946, PP-loop ATpase)|rcsb pdb:1NI5|uniprotkb:P52097(identity) refseq:NP_414730.1|refseq:WP_000176549.1|dip:DIP-10190N|ensemblbacteria:AAC73299(transcript)|ensemblbacteria:b0188(gene)|ensemblbacteria:BAA77863(gene)|ensemblbacteria:BAA77863(transcript)|go:"GO:0002136"(tRNA wobble base lysidine biosynthesis)|go:"GO:0005524"(ATP binding)|go:"GO:0005829"(cytosol)|go:"GO:0006400"(tRNA modification)|go:"GO:0032267"("tRNA(Ile)-lysidine synthase activity")|go:"GO:0042802"(identical protein binding)|interpro:IPR011063(PP-loop)|interpro:IPR012094(Cell cycle control PP-loop ATPase MesJ/YaeO)|interpro:IPR012795("Lysidine-tRNA(Ile) synthetase, N-terminal")|interpro:IPR012796("Lysidine-tRNA(Ile) synthetase, C-terminal")|interpro:IPR014729(Rossmann-like alpha/beta/alpha sandwich fold)|interpro:IPR015262(Protein of unkown function DUF1946, PP-loop ATpase)|rcsb pdb:1NI5|uniprotkb:P52097(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:njj3wg8RGkMzkTu+0tZywE7qoYI83333 rogid:njj3wg8RGkMzkTu+0tZywE7qoYI83333 intact-crc:674F82BB7266B285|rigid:FGPWAV6OlzG6KwqSl/h1g3Xd/T0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P63177 uniprotkb:P63177 intact:EBI-562712|ensemblbacteria:AAC77137|ensemblbacteria:BAE78181|uniprotkb:P39290|uniprotkb:Q2M6C5 intact:EBI-562712|ensemblbacteria:AAC77137|ensemblbacteria:BAE78181|uniprotkb:P39290|uniprotkb:Q2M6C5 psi-mi:rlmb_ecoli(display_long)|uniprotkb:yjfH(gene name synonym)|uniprotkb:23S rRNA Gm2251 2'-O-methyltransferase(gene name synonym)|uniprotkb:rlmB(gene name)|psi-mi:rlmB(display_short)|uniprotkb:b4180(locus name)|uniprotkb:JW4138(locus name)|uniprotkb:"23S rRNA (guanosine2251 2'-O)-methyltransferase"(gene name synonym) psi-mi:rlmb_ecoli(display_long)|uniprotkb:yjfH(gene name synonym)|uniprotkb:23S rRNA Gm2251 2'-O-methyltransferase(gene name synonym)|uniprotkb:rlmB(gene name)|psi-mi:rlmB(display_short)|uniprotkb:b4180(locus name)|uniprotkb:JW4138(locus name)|uniprotkb:"23S rRNA (guanosine2251 2'-O)-methyltransferase"(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342375|imex:IM-22256-1429 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblbacteria:AAC77137(transcript)|ensemblbacteria:b4180(gene)|ensemblbacteria:BAE78181(gene)|ensemblbacteria:BAE78181(transcript)|go:"GO:0000453"(enzyme-directed rRNA 2'-O-methylation)|go:"GO:0001510"(RNA methylation)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008173"(RNA methyltransferase activity)|go:"GO:0070039"("rRNA (guanosine-2'-O-)-methyltransferase activity")|interpro:IPR001537(tRNA/rRNA methyltransferase, SpoU)|interpro:IPR004441(RNA methyltransferase TrmH, group 3)|interpro:IPR013123(RNA 2-O ribose methyltransferase, substrate binding)|interpro:IPR024915|interpro:IPR029026|interpro:IPR029028|interpro:IPR029064|rcsb pdb:1GZ0|refseq:NP_418601.1|refseq:WP_001293282.1|dip:DIP-47866N|uniprotkb:P63177(identity) ensemblbacteria:AAC77137(transcript)|ensemblbacteria:b4180(gene)|ensemblbacteria:BAE78181(gene)|ensemblbacteria:BAE78181(transcript)|go:"GO:0000453"(enzyme-directed rRNA 2'-O-methylation)|go:"GO:0001510"(RNA methylation)|go:"GO:0003723"(RNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0008173"(RNA methyltransferase activity)|go:"GO:0070039"("rRNA (guanosine-2'-O-)-methyltransferase activity")|interpro:IPR001537(tRNA/rRNA methyltransferase, SpoU)|interpro:IPR004441(RNA methyltransferase TrmH, group 3)|interpro:IPR013123(RNA 2-O ribose methyltransferase, substrate binding)|interpro:IPR024915|interpro:IPR029026|interpro:IPR029028|interpro:IPR029064|rcsb pdb:1GZ0|refseq:NP_418601.1|refseq:WP_001293282.1|dip:DIP-47866N|uniprotkb:P63177(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:sF/XSYZDFdWqQE3SY9ngzkWOmFk83333 rogid:sF/XSYZDFdWqQE3SY9ngzkWOmFk83333 intact-crc:45C85D76E92A3F00|rigid:MjmwIgZvOXKEzl4sBWaMShu8yLM false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P0AFU4 uniprotkb:P71229 intact:EBI-1129449|uniprotkb:P21712|uniprotkb:P77512|ensemblbacteria:AAC75607|ensemblbacteria:BAA16462 intact:EBI-556101|uniprotkb:P76567|uniprotkb:P76976|uniprotkb:P76977|ensemblbacteria:AAC75544|ensemblbacteria:BAA16380 psi-mi:glrr_ecoli(display_long)|uniprotkb:b2554(locus name)|uniprotkb:JW2538(locus name)|uniprotkb:glrR(gene name)|psi-mi:glrR(display_short)|uniprotkb:yfhA(gene name synonym) psi-mi:hyfr_ecoli(display_long)|uniprotkb:hyfR(gene name)|psi-mi:hyfR(display_short)|uniprotkb:Hydrogenase-4 transcriptional activator(gene name synonym)|uniprotkb:JW2476(locus name)|uniprotkb:b2491(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342392|imex:IM-22256-1430 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_417049.1|refseq:WP_001295369.1|ensemblbacteria:AAC75607(transcript)|ensemblbacteria:b2554(gene)|ensemblbacteria:BAA16462(gene)|ensemblbacteria:BAA16462(transcript)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0000986"|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-12044N|uniprotkb:P0AFU4(identity) refseq:NP_416986.4|refseq:WP_001251544.1|dip:DIP-9993N|ensemblbacteria:AAC75544(transcript)|ensemblbacteria:b2491(gene)|ensemblbacteria:BAA16380(gene)|ensemblbacteria:BAA16380(transcript)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0005524"(ATP binding)|go:"GO:0006352"(DNA-templated transcription, initiation)|go:"GO:2000142"(regulation of DNA-templated transcription, initiation)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR003018(GAF)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|interpro:IPR029016|uniprotkb:P71229(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:kJ2/YADn4jwNbgcFQ6wTIRhS4Ac83333 rogid:FeC83Xc9keZZqR32ZKE2qUsIcdU83333 intact-crc:55B45D7F99BAB883|rigid:3sIhe4aRuXWiS+OIlyHSx5+zSd4 false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P76458 uniprotkb:P76458 intact:EBI-555870|ensemblbacteria:AAC75281|ensemblbacteria:BAA16017 intact:EBI-555870|ensemblbacteria:AAC75281|ensemblbacteria:BAA16017 psi-mi:atod_ecoli(display_long)|uniprotkb:"Acetyl-CoA:acetoacetate-CoA transferase subunit alpha"(gene name synonym)|uniprotkb:atoD(gene name)|psi-mi:atoD(display_short)|uniprotkb:b2221(locus name)|uniprotkb:JW2215(locus name) psi-mi:atod_ecoli(display_long)|uniprotkb:"Acetyl-CoA:acetoacetate-CoA transferase subunit alpha"(gene name synonym)|uniprotkb:atoD(gene name)|psi-mi:atoD(display_short)|uniprotkb:b2221(locus name)|uniprotkb:JW2215(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342409|imex:IM-22256-1431 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416725.1|refseq:WP_000850540.1|dip:DIP-9191N|ensemblbacteria:AAC75281(transcript)|ensemblbacteria:b2221(gene)|ensemblbacteria:BAA16017(gene)|ensemblbacteria:BAA16017(transcript)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|go:"GO:0046459"(short-chain fatty acid metabolic process)|interpro:IPR004163(Coenzyme A transferase binding site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012792(3-oxoacid CoA-transferase, subunit A)|interpro:IPR037171|rcsb pdb:1K6D|rcsb pdb:5DBN|uniprotkb:P76458(identity) refseq:NP_416725.1|refseq:WP_000850540.1|dip:DIP-9191N|ensemblbacteria:AAC75281(transcript)|ensemblbacteria:b2221(gene)|ensemblbacteria:BAA16017(gene)|ensemblbacteria:BAA16017(transcript)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|go:"GO:0046459"(short-chain fatty acid metabolic process)|interpro:IPR004163(Coenzyme A transferase binding site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012792(3-oxoacid CoA-transferase, subunit A)|interpro:IPR037171|rcsb pdb:1K6D|rcsb pdb:5DBN|uniprotkb:P76458(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:km+WYOcxXTLYfCoRqNap0PiLi5A83333 rogid:km+WYOcxXTLYfCoRqNap0PiLi5A83333 intact-crc:DBEE7AEA6CB9DD60|rigid:sEmxd9M99zILP5eDa6lmvLEI2HU false dna binding domain tag:c-c("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P76458 uniprotkb:P76459 intact:EBI-555870|ensemblbacteria:AAC75281|ensemblbacteria:BAA16017 intact:EBI-1128061|uniprotkb:P94762|ensemblbacteria:AAC75282|ensemblbacteria:BAA16018 psi-mi:atod_ecoli(display_long)|uniprotkb:"Acetyl-CoA:acetoacetate-CoA transferase subunit alpha"(gene name synonym)|uniprotkb:atoD(gene name)|psi-mi:atoD(display_short)|uniprotkb:b2221(locus name)|uniprotkb:JW2215(locus name) psi-mi:atoa_ecoli(display_long)|uniprotkb:atoA(gene name)|psi-mi:atoA(display_short)|uniprotkb:"Acetyl-CoA:acetoacetate CoA-transferase subunit beta"(gene name synonym)|uniprotkb:JW2216(locus name)|uniprotkb:b2222(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342426|imex:IM-22256-1432 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416725.1|refseq:WP_000850540.1|dip:DIP-9191N|ensemblbacteria:AAC75281(transcript)|ensemblbacteria:b2221(gene)|ensemblbacteria:BAA16017(gene)|ensemblbacteria:BAA16017(transcript)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|go:"GO:0046459"(short-chain fatty acid metabolic process)|interpro:IPR004163(Coenzyme A transferase binding site)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR012792(3-oxoacid CoA-transferase, subunit A)|interpro:IPR037171|rcsb pdb:1K6D|rcsb pdb:5DBN|uniprotkb:P76458(identity) refseq:NP_416726.1|interpro:IPR012791(3-oxoacid CoA-transferase, subunit B)|interpro:IPR004165(Coenzyme A transferase)|interpro:IPR004164(Coenzyme A transferase active site)|refseq:WP_000339065.1|ensemblbacteria:AAC75282(transcript)|ensemblbacteria:b2222(gene)|ensemblbacteria:BAA16018(gene)|ensemblbacteria:BAA16018(transcript)|go:"GO:0008410"(CoA-transferase activity)|go:"GO:0008775"(acetate CoA-transferase activity)|go:"GO:0046459"(short-chain fatty acid metabolic process)|rcsb pdb:5DBN|interpro:IPR037171|uniprotkb:P76459(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:km+WYOcxXTLYfCoRqNap0PiLi5A83333 rogid:KqNwJZ+W/MPKB0BYfSgeIkLAX1o83333 intact-crc:3461F07504EA7C49|rigid:ls8R8HxrT7k89fzVAs9gule/qfI false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P77234 uniprotkb:P77234 intact:EBI-9136285|ensemblbacteria:AAC73745|ensemblbacteria:BAA35291 intact:EBI-9136285|ensemblbacteria:AAC73745|ensemblbacteria:BAA35291 psi-mi:ybeq_ecoli(display_long)|uniprotkb:JW5091(locus name)|uniprotkb:b0644(locus name)|uniprotkb:ybeQ(gene name)|psi-mi:ybeQ(display_short) psi-mi:ybeq_ecoli(display_long)|uniprotkb:JW5091(locus name)|uniprotkb:b0644(locus name)|uniprotkb:ybeQ(gene name)|psi-mi:ybeQ(display_short) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342443|imex:IM-22256-1433 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR006597(Sel1-like)|refseq:NP_415177.4|refseq:WP_000578178.1|ensemblbacteria:AAC73745(transcript)|ensemblbacteria:b0644(gene)|ensemblbacteria:BAA35291(gene)|ensemblbacteria:BAA35291(transcript)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0008047"(enzyme activator activity)|uniprotkb:P77234(identity) interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR006597(Sel1-like)|refseq:NP_415177.4|refseq:WP_000578178.1|ensemblbacteria:AAC73745(transcript)|ensemblbacteria:b0644(gene)|ensemblbacteria:BAA35291(gene)|ensemblbacteria:BAA35291(transcript)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0008047"(enzyme activator activity)|uniprotkb:P77234(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:ULjUVXa70iO5oWB6AokPqLQhHd483333 rogid:ULjUVXa70iO5oWB6AokPqLQhHd483333 intact-crc:5474F74B3F39B39B|rigid:2+axwiVMho8T2FVfBlOn0leieCY false activation domain tag:n-n("MI:0689") dna binding domain tag:n-n("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P77485 uniprotkb:P0ACZ8 intact:EBI-9155864|uniprotkb:Q9R7T9|uniprotkb:Q9R7U0|ensemblbacteria:AAC73671|ensemblbacteria:BAA35204 intact:EBI-1118807|uniprotkb:P77380|ensemblbacteria:AAC73672|ensemblbacteria:BAA35205 psi-mi:cuss_ecoli(display_long)|uniprotkb:cusS(gene name)|psi-mi:cusS(display_short)|uniprotkb:ybcZ(gene name synonym)|uniprotkb:JW5082(locus name)|uniprotkb:b0570(locus name) psi-mi:cusr_ecoli(display_long)|uniprotkb:cusR(gene name)|psi-mi:cusR(display_short)|uniprotkb:b0571(locus name)|uniprotkb:JW0560(locus name)|uniprotkb:ylcA(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342460|imex:IM-22256-1434 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_415102.1|refseq:WP_000253839.1|dip:DIP-9349N|ensemblbacteria:AAC73671(transcript)|ensemblbacteria:b0570(gene)|ensemblbacteria:BAA35204(gene)|ensemblbacteria:BAA35204(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0004673"(protein histidine kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0005887"(integral component of plasma membrane)|go:"GO:0016020"(membrane)|go:"GO:0016310"(phosphorylation)|go:"GO:0018106"(peptidyl-histidine phosphorylation)|go:"GO:0046872"(metal ion binding)|go:"GO:0071280"(cellular response to copper ion)|go:"GO:0071292"(cellular response to silver ion)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR006290(Signal transduction histidine kinase, heavy metal sensor)|interpro:IPR036097|interpro:IPR036890|rcsb pdb:5KU5|uniprotkb:P77485(identity) ensemblbacteria:AAC73672(transcript)|ensemblbacteria:b0571(gene)|ensemblbacteria:BAA35205(gene)|ensemblbacteria:BAA35205(transcript)|go:"GO:0000156"(phosphorelay response regulator activity)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0001216"(DNA-binding transcription activator activity)|go:"GO:0003677"(DNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0010628"(positive regulation of gene expression)|go:"GO:0032993"(protein-DNA complex)|go:"GO:0042802"(identical protein binding)|go:"GO:0046688"(response to copper ion)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR001867(Signal transduction response regulator, C-terminal)|interpro:IPR006291(Signal transduction response regulator, heavy metal response)|interpro:IPR011006(CheY-like)|interpro:IPR016032(Signal transduction response regulator, C-terminal effector)|interpro:IPR036388|interpro:IPR039420|refseq:WP_000770953.1|refseq:NP_415103.1|dip:DIP-9348N|uniprotkb:P0ACZ8(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:3kjTlKCe43T/GlSsXvC9wX1pPrs83333 rogid:h9ApAA+LIlHIkKLPxVygwUyX2gc83333 intact-crc:9E5853630C248CB2|rigid:SoeQopg4e0YJkej2CQOLO3GKduY false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P77748 uniprotkb:P0AC47 intact:EBI-1133061|ensemblbacteria:AAC74757|ensemblbacteria:BAA15451 intact:EBI-906724|uniprotkb:P00364|uniprotkb:Q2M6E9|ensemblbacteria:AAC77113|ensemblbacteria:BAE78157 psi-mi:ydij_ecoli(display_long)|uniprotkb:b1687(locus name)|uniprotkb:JW1677(locus name)|uniprotkb:ydiJ(gene name)|psi-mi:ydiJ(display_short) psi-mi:frdb_ecoli(display_long)|uniprotkb:frdB(gene name)|psi-mi:frdB(display_short)|uniprotkb:Quinol-fumarate reductase iron-sulfur subunit(gene name synonym)|uniprotkb:JW4114(locus name)|uniprotkb:b4153(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342477|imex:IM-22256-1435 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:WP_000613008.1|refseq:NP_416202.1|ensemblbacteria:AAC74757(transcript)|ensemblbacteria:b1687(gene)|ensemblbacteria:BAA15451(gene)|ensemblbacteria:BAA15451(transcript)|go:"GO:0004458"("D-lactate dehydrogenase (cytochrome) activity")|go:"GO:0008720"(D-lactate dehydrogenase activity)|go:"GO:0046872"(metal ion binding)|go:"GO:0050660"(flavin adenine dinucleotide binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0071949"(FAD binding)|go:"GO:1903457"(lactate catabolic process)|interpro:IPR004113(FAD-linked oxidase, C-terminal)|interpro:IPR006094(FAD linked oxidase, N-terminal)|interpro:IPR016164(FAD-linked oxidase-like, C-terminal)|interpro:IPR016166(FAD-binding, type 2)|interpro:IPR016169(CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)|interpro:IPR016171(Vanillyl-alcohol oxidase, C-terminal subdomain 2)|interpro:IPR017896|interpro:IPR017900|interpro:IPR036318|dip:DIP-11751N|uniprotkb:P77748(identity) refseq:NP_418577.1|refseq:WP_000829498.1|dip:DIP-9682N|ensemblbacteria:AAC77113(transcript)|ensemblbacteria:b4153(gene)|ensemblbacteria:BAE78157(gene)|ensemblbacteria:BAE78157(transcript)|go:"GO:0005829"(cytosol)|go:"GO:0006099"(tricarboxylic acid cycle)|go:"GO:0006113"(fermentation)|go:"GO:0009055"(electron transfer activity)|go:"GO:0009061"(anaerobic respiration)|go:"GO:0016020"(membrane)|go:"GO:0044780"(bacterial-type flagellum assembly)|go:"GO:0045284"(plasma membrane fumarate reductase complex)|go:"GO:0046872"(metal ion binding)|go:"GO:0051536"(iron-sulfur cluster binding)|go:"GO:0051537"(2 iron, 2 sulfur cluster binding)|go:"GO:0051538"(3 iron, 4 sulfur cluster binding)|go:"GO:0051539"(4 iron, 4 sulfur cluster binding)|go:"GO:0071973"(bacterial-type flagellum-dependent cell motility)|go:"GO:0102040"("fumarate reductase (menaquinone)")|interpro:IPR001041(Ferredoxin)|interpro:IPR004489(Succinate dehydrogenase/fumarate reductase iron-sulphur protein)|interpro:IPR006058(2Fe-2S ferredoxin, iron-sulphur binding site)|interpro:IPR009051(Alpha-helical ferredoxin)|interpro:IPR012675(Beta-grasp fold, ferredoxin-type)|interpro:IPR017896|interpro:IPR017900|interpro:IPR025192|interpro:IPR036010|rcsb pdb:1KF6|rcsb pdb:1KFY|rcsb pdb:1L0V|rcsb pdb:2B76|rcsb pdb:3CIR|rcsb pdb:3P4P|rcsb pdb:3P4Q|rcsb pdb:3P4R|rcsb pdb:3P4S|uniprotkb:P0AC47(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:hMYnKLgEUGLRxC6NPelFzdGRRBs83333 rogid:6BEDH9lhrN3Ahc7QDc8KQG9AFZY83333 intact-crc:890ED0AC5C79FB76|rigid:ig7VvIQfb+gS/TxGwxeSVqzs0I0 false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q06065 uniprotkb:Q06065 intact:EBI-1128048|ensemblbacteria:AAC75280|ensemblbacteria:BAA16016 intact:EBI-1128048|ensemblbacteria:AAC75280|ensemblbacteria:BAA16016 psi-mi:atoc_ecoli(display_long)|uniprotkb:Acetoacetate metabolism regulatory protein(gene name synonym)|uniprotkb:DNA-binding transcriptional regulator AtoC(gene name synonym)|uniprotkb:atoC(gene name)|psi-mi:atoC(display_short)|uniprotkb:az(gene name synonym)|uniprotkb:b2220(locus name)|uniprotkb:JW2214(locus name)|uniprotkb:Ornithine decarboxylase antizyme(gene name synonym) psi-mi:atoc_ecoli(display_long)|uniprotkb:Acetoacetate metabolism regulatory protein(gene name synonym)|uniprotkb:DNA-binding transcriptional regulator AtoC(gene name synonym)|uniprotkb:atoC(gene name)|psi-mi:atoC(display_short)|uniprotkb:az(gene name synonym)|uniprotkb:b2220(locus name)|uniprotkb:JW2214(locus name)|uniprotkb:Ornithine decarboxylase antizyme(gene name synonym) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342494|imex:IM-22256-1436 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416724.1|refseq:WP_000125282.1|ensemblbacteria:AAC75280(transcript)|ensemblbacteria:b2220(gene)|ensemblbacteria:BAA16016(gene)|ensemblbacteria:BAA16016(transcript)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008073"(ornithine decarboxylase inhibitor activity)|go:"GO:0010967"(regulation of polyamine biosynthetic process)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-9190N|uniprotkb:Q06065(identity) refseq:NP_416724.1|refseq:WP_000125282.1|ensemblbacteria:AAC75280(transcript)|ensemblbacteria:b2220(gene)|ensemblbacteria:BAA16016(gene)|ensemblbacteria:BAA16016(transcript)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008073"(ornithine decarboxylase inhibitor activity)|go:"GO:0010967"(regulation of polyamine biosynthetic process)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-9190N|uniprotkb:Q06065(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:pw8NSD1IcWAb41E6hjtPGjVJF7I83333 rogid:pw8NSD1IcWAb41E6hjtPGjVJF7I83333 intact-crc:D35F93D921FC2280|rigid:XgBGqZElrljlWVqDfSyY0Dyx5IM false dna binding domain tag:n-n("MI:0688") activation domain tag:n-n("MI:0689") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q06065 uniprotkb:Q06067 intact:EBI-1128048|ensemblbacteria:AAC75280|ensemblbacteria:BAA16016 intact:EBI-1123942|ensemblbacteria:AAC75279|ensemblbacteria:BAA16015 psi-mi:atoc_ecoli(display_long)|uniprotkb:Acetoacetate metabolism regulatory protein(gene name synonym)|uniprotkb:DNA-binding transcriptional regulator AtoC(gene name synonym)|uniprotkb:atoC(gene name)|psi-mi:atoC(display_short)|uniprotkb:az(gene name synonym)|uniprotkb:b2220(locus name)|uniprotkb:JW2214(locus name)|uniprotkb:Ornithine decarboxylase antizyme(gene name synonym) psi-mi:atos_ecoli(display_long)|uniprotkb:atoS(gene name)|psi-mi:atoS(display_short)|uniprotkb:b2219(locus name)|uniprotkb:JW2213(locus name) psi-mi:"MI:0397"(two hybrid array) Häuser et al. (2014) imex:IM-22256|pubmed:24627523 taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") taxid:83333(ecoli)|taxid:83333("Escherichia coli (strain K12)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-9342511|imex:IM-22256-1437 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_416724.1|refseq:WP_000125282.1|ensemblbacteria:AAC75280(transcript)|ensemblbacteria:b2220(gene)|ensemblbacteria:BAA16016(gene)|ensemblbacteria:BAA16016(transcript)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0008073"(ornithine decarboxylase inhibitor activity)|go:"GO:0010967"(regulation of polyamine biosynthetic process)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045893"(positive regulation of transcription, DNA-templated)|interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR002078(RNA polymerase sigma factor 54, interaction)|interpro:IPR002197(Helix-turn-helix, Fis-type)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR009057(Homeodomain-like)|interpro:IPR011006(CheY-like)|interpro:IPR025662|interpro:IPR025943|interpro:IPR025944|interpro:IPR027417|dip:DIP-9190N|uniprotkb:Q06065(identity) refseq:WP_000559125.1|ensemblbacteria:AAC75279(transcript)|ensemblbacteria:b2219(gene)|ensemblbacteria:BAA16015(gene)|ensemblbacteria:BAA16015(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005886"(plasma membrane)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0016021"(integral component of membrane)|go:"GO:0018106"(peptidyl-histidine phosphorylation)|go:"GO:0046777"(protein autophosphorylation)|go:"GO:1904583"(response to polyamine macromolecule)|refseq:NP_416723.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003660(Signal transduction histidine kinase, HAMP region)|interpro:IPR000014(PAS)|interpro:IPR000700(PAS-associated, C-terminal)|interpro:IPR013767(PAS fold)|interpro:IPR004358(Signal transduction histidine kinase-related protein, C-terminal)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR035965|interpro:IPR036097|interpro:IPR036890|uniprotkb:Q06067(identity) psi-mi:"MI:0469"(intact) - - figure legend:Table S6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2014/03/12 2014/10/16 rogid:pw8NSD1IcWAb41E6hjtPGjVJF7I83333 rogid:cKlCLQ8L6r0Nt27Q4sQCco+SKFQ83333 intact-crc:DA8E5FD8DD2378C3|rigid:DlNLuvCZXsvM6Ywbku7oE3K8fZ0 false activation domain tag:n-n("MI:0689") dna binding domain tag:c-c("MI:0688") - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant)