#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:P42574	uniprotkb:Q676U5	intact:EBI-524064|ensembl:ENSP00000311032|ensembl:ENSP00000428929|uniprotkb:Q96AN1|uniprotkb:Q96KP2|uniprotkb:A8K5M2|uniprotkb:D3DP53	intact:EBI-535909|uniprotkb:Q6IPN1|uniprotkb:Q6UXW4|uniprotkb:Q6ZVZ5|uniprotkb:Q8NCY2|uniprotkb:Q96JV5|uniprotkb:Q9H619|uniprotkb:A3EXK9|uniprotkb:A3EXL0|uniprotkb:B6ZDH0|ensembl:ENSP00000375872|ensembl:ENSP00000487542	psi-mi:casp3_human(display_long)|uniprotkb:Apopain(gene name synonym)|uniprotkb:Cysteine protease CPP32(gene name synonym)|uniprotkb:Protein Yama(gene name synonym)|uniprotkb:SREBP cleavage activity 1(gene name synonym)|uniprotkb:CASP3(gene name)|psi-mi:CASP3(display_short)|uniprotkb:CPP32(gene name synonym)	psi-mi:a16l1_human(display_long)|uniprotkb:APG16-like 1(gene name synonym)|uniprotkb:UNQ9393/PRO34307(orf name)|uniprotkb:ATG16L1(gene name)|psi-mi:ATG16L1(display_short)|uniprotkb:APG16L(gene name synonym)	psi-mi:"MI:0435"(protease assay)	Murthy et al. (2014)	pubmed:24553140|imex:IM-23538	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0570"(protein cleavage)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9998285|imex:IM-23538-1	-	-	psi-mi:"MI:0501"(enzyme)	psi-mi:"MI:0502"(enzyme target)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	go:"GO:0009749"(response to glucose)|go:"GO:0001554"(luteolysis)|go:"GO:0001666"(response to hypoxia)|go:"GO:0001782"(B cell homeostasis)|go:"GO:0002020"(protease binding)|go:"GO:0004190"(aspartic-type endopeptidase activity)|go:"GO:0004197"(cysteine-type endopeptidase activity)|go:"GO:0004861"(cyclin-dependent protein serine/threonine kinase inhibitor activity)|go:"GO:0005123"(death receptor binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|ensembl:ENSG00000164305(gene)|go:"GO:0006508"(proteolysis)|go:"GO:0006915"(apoptotic process)|ensembl:ENST00000308394(transcript)|ensembl:ENST00000523916(transcript)|go:"GO:0006974"(cellular response to DNA damage stimulus)|go:"GO:0007413"(axonal fasciculation)|go:"GO:0007507"(heart development)|go:"GO:0007605"(sensory perception of sound)|go:"GO:0007611"(learning or memory)|go:"GO:0008233"(peptidase activity)|go:"GO:0008627"(intrinsic apoptotic signaling pathway in response to osmotic stress)|go:"GO:0009411"(response to UV)|go:"GO:0010165"(response to X-ray)|go:"GO:0016005"(phospholipase A2 activator activity)|go:"GO:0016241"(regulation of macroautophagy)|go:"GO:0016485"(protein processing)|go:"GO:0021766"(hippocampus development)|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0030182"(neuron differentiation)|go:"GO:0030216"(keratinocyte differentiation)|go:"GO:0030218"(erythrocyte differentiation)|go:"GO:0030220"(platelet formation)|go:"GO:0030889"(negative regulation of B cell proliferation)|go:"GO:0031264"(death-inducing signaling complex)|go:"GO:0031647"(regulation of protein stability)|go:"GO:0032025"(response to cobalt ion)|go:"GO:0032355"(response to estradiol)|go:"GO:0032496"(response to lipopolysaccharide)|go:"GO:0034349"(glial cell apoptotic process)|go:"GO:0034612"(response to tumor necrosis factor)|go:"GO:0035094"(response to nicotine)|go:"GO:0042060"(wound healing)|go:"GO:0042493"|go:"GO:0042542"(response to hydrogen peroxide)|go:"GO:0043025"(neuronal cell body)|go:"GO:0043029"(T cell homeostasis)|go:"GO:0043065"(positive regulation of apoptotic process)|go:"GO:0043066"(negative regulation of apoptotic process)|go:"GO:0043200"(response to amino acid)|go:"GO:0043525"(positive regulation of neuron apoptotic process)|go:"GO:0045121"(membrane raft)|go:"GO:0045165"(cell fate commitment)|go:"GO:0046007"(negative regulation of activated T cell proliferation)|go:"GO:0046677"(response to antibiotic)|go:"GO:0048011"(neurotrophin TRK receptor signaling pathway)|go:"GO:0051146"(striated muscle cell differentiation)|go:"GO:0051384"(response to glucocorticoid)|go:"GO:0051402"(neuron apoptotic process)|go:"GO:0061713"(anterior neural tube closure)|go:"GO:0071887"(leukocyte apoptotic process)|go:"GO:0072734"(cellular response to staurosporine)|go:"GO:0097153"(cysteine-type endopeptidase activity involved in apoptotic process)|go:"GO:0097190"(apoptotic signaling pathway)|go:"GO:0097194"(execution phase of apoptosis)|go:"GO:0097199"(cysteine-type endopeptidase activity involved in apoptotic signaling pathway)|go:"GO:0097200"(cysteine-type endopeptidase activity involved in execution phase of apoptosis)|go:"GO:1902004"(positive regulation of amyloid-beta formation)|interpro:IPR001309(Peptidase C14, ICE, catalytic subunit p20)|interpro:IPR002138(Peptidase C14, caspase non-catalytic subunit p10)|rcsb pdb:1GFW|rcsb pdb:1I3O|rcsb pdb:1NME|rcsb pdb:1NMQ|rcsb pdb:1NMS|interpro:IPR015471(Caspase-7)|interpro:IPR015917(Peptidase C14, caspase precursor p45, core)|interpro:IPR016129(Peptidase C14, ICE, catalytic subunit p20, active site)|interpro:IPR029030|interpro:IPR033139|mint:P42574|interpro:IPR002398(Peptidase C14, caspase precursor p45)|rcsb pdb:1CP3|rcsb pdb:4QUH|rcsb pdb:4QUI|rcsb pdb:4QUD|rcsb pdb:4QUJ|rcsb pdb:4QUL|rcsb pdb:5I9B|rcsb pdb:5I9T|rcsb pdb:5IAB|rcsb pdb:5IAE|rcsb pdb:5IAG|rcsb pdb:4QUE|rcsb pdb:5IAJ|rcsb pdb:4QUG|rcsb pdb:5IAK|rcsb pdb:5IAN|rcsb pdb:5IAR|rcsb pdb:5IAS|rcsb pdb:5IBC|rcsb pdb:5IBP|rcsb pdb:5IBR|rcsb pdb:5IC4|reactome:R-HSA-111459|reactome:R-HSA-111463|reactome:R-HSA-111465|reactome:R-HSA-111469|reactome:R-HSA-140342|reactome:R-HSA-1474228|reactome:R-HSA-2028269|reactome:R-HSA-205025|reactome:R-HSA-211736|reactome:R-HSA-264870|reactome:R-HSA-351906|reactome:R-HSA-418889|reactome:R-HSA-449836|reactome:R-HSA-5620971|reactome:R-HSA-111464|rcsb pdb:1QX3|rcsb pdb:1RE1|rcsb pdb:1RHJ|rcsb pdb:1RHK|rcsb pdb:1RHM|rcsb pdb:1RHQ|rcsb pdb:1RHR|rcsb pdb:1RHU|rcsb pdb:2C1E|rcsb pdb:2C2K|rcsb pdb:2C2M|rcsb pdb:2C2O|rcsb pdb:2CDR|rcsb pdb:2CJX|rcsb pdb:2CJY|rcsb pdb:2CNK|rcsb pdb:2CNL|rcsb pdb:2CNN|rcsb pdb:2CNO|rcsb pdb:2DKO|rcsb pdb:2H5I|rcsb pdb:2H5J|rcsb pdb:2H65|rcsb pdb:2J30|rcsb pdb:2J31|rcsb pdb:2J32|rcsb pdb:2J33|rcsb pdb:2XYG|rcsb pdb:2XYH|rcsb pdb:2XYP|rcsb pdb:2XZD|rcsb pdb:2XZT|rcsb pdb:2Y0B|rcsb pdb:3DEH|rcsb pdb:1PAU|rcsb pdb:3DEI|rcsb pdb:3DEJ|rcsb pdb:3DEK|rcsb pdb:3EDQ|rcsb pdb:3GJQ|rcsb pdb:3GJS|rcsb pdb:3GJT|rcsb pdb:3H0E|rcsb pdb:3ITN|rcsb pdb:3KJF|rcsb pdb:3PCX|rcsb pdb:3PD0|rcsb pdb:3PD1|rcsb pdb:4DCJ|rcsb pdb:4DCO|rcsb pdb:4DCP|rcsb pdb:4EHA|rcsb pdb:4EHD|rcsb pdb:4EHF|rcsb pdb:4EHH|rcsb pdb:4EHK|rcsb pdb:4EHL|rcsb pdb:4EHN|rcsb pdb:4JJE|rcsb pdb:4JQY|rcsb pdb:4JQZ|rcsb pdb:4JR0|rcsb pdb:4PRY|rcsb pdb:4PS0|rcsb pdb:4QTX|rcsb pdb:3GJR|rcsb pdb:4QTY|rcsb pdb:4QU0|rcsb pdb:4QU5|rcsb pdb:4QU8|rcsb pdb:4QU9|rcsb pdb:4QUA|rcsb pdb:4QUB|refseq:XP_011530603.1|refseq:NP_004337.2|refseq:NP_116786.1|dip:DIP-268N	refseq:NP_001177195.1|refseq:NP_001177196.1|refseq:NP_060444.3|refseq:NP_110430.5|refseq:NP_942593.2|dip:DIP-27552N|dip:DIP-50290N|ensembl:ENSG00000085978(gene)|ensembl:ENSG00000281089(gene)|ensembl:ENST00000392017(transcript)|ensembl:ENST00000625501(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0000421"(autophagosome membrane)|go:"GO:0005776"(autophagosome)|go:"GO:0005829"(cytosol)|go:"GO:0005930"(axoneme)|go:"GO:0010508"(positive regulation of autophagy)|go:"GO:0015031"(protein transport)|go:"GO:0016236"(macroautophagy)|go:"GO:0019787"(ubiquitin-like protein transferase activity)|go:"GO:0034045"(phagophore assembly site membrane)|go:"GO:0034497"(protein localization to phagophore assembly site)|go:"GO:0039689"(negative stranded viral RNA replication)|go:"GO:0042802"(identical protein binding)|go:"GO:0051020"(GTPase binding)|go:"GO:0061739"(protein lipidation involved in autophagosome assembly)|go:"GO:0098792"(xenophagy)|go:"GO:0120095"(vacuole-isolation membrane contact site)|interpro:IPR001680(WD40 repeat)|interpro:IPR013923(Autophagy protein 16)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR019775|interpro:IPR020472|interpro:IPR036322|mint:Q676U5|rcsb pdb:4GDK|rcsb pdb:4GDL|rcsb pdb:4NAW|rcsb pdb:4TQ0|rcsb pdb:5D7G|rcsb pdb:5NPV|rcsb pdb:5NPW|rcsb pdb:5NUV|rcsb pdb:5ZYX|reactome:R-HSA-1632852	go:"GO:0006508"(proteolysis)|go:"GO:0008233"(peptidase activity)	-	-	figure legend:Fig. 1b, Extended data fig. 1a|causality statement:P42574 is required for cleavage of Q676U5|causality statement:P42574 increases degradation at protein level of Q676U5|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|dataset:IBD - Inflammatory bowel disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/12/05	2014/12/15	rogid:o7/WP52saFha1/FD2z1rIgVLDfI9606	rogid:rLwpmIwMwd/GgPJA+7OKYTnn73E9606	intact-crc:61959EAA1FFE5A35|rigid:WskJQ2tdO2G7AGHAOinNMyakV0U	false	-	mutation increasing interaction rate:300-300|v5 tag:c-c|mutation disrupting interaction rate:299-299	-	-	psi-mi:"MI:0705"(anti tag western blot)	psi-mi:"MI:0705"(anti tag western blot)
uniprotkb:Q676U5	uniprotkb:P29466	intact:EBI-535909|uniprotkb:Q6IPN1|uniprotkb:Q6UXW4|uniprotkb:Q6ZVZ5|uniprotkb:Q8NCY2|uniprotkb:Q96JV5|uniprotkb:Q9H619|uniprotkb:A3EXK9|uniprotkb:A3EXL0|uniprotkb:B6ZDH0|ensembl:ENSP00000375872|ensembl:ENSP00000487542	intact:EBI-516667|uniprotkb:B5MDZ1|uniprotkb:Q53EY6|uniprotkb:Q6DMQ1|uniprotkb:Q6GSS3|uniprotkb:Q6PI75|uniprotkb:Q9UCN3|ensembl:ENSP00000410076|ensembl:ENSP00000433138	psi-mi:a16l1_human(display_long)|uniprotkb:APG16-like 1(gene name synonym)|uniprotkb:UNQ9393/PRO34307(orf name)|uniprotkb:ATG16L1(gene name)|psi-mi:ATG16L1(display_short)|uniprotkb:APG16L(gene name synonym)	psi-mi:casp1_human(display_long)|uniprotkb:Interleukin-1 beta convertase(gene name synonym)|uniprotkb:Interleukin-1 beta-converting enzyme(gene name synonym)|uniprotkb:p45(gene name synonym)|uniprotkb:CASP1(gene name)|psi-mi:CASP1(display_short)|uniprotkb:IL1BC(gene name synonym)|uniprotkb:IL1BCE(gene name synonym)	psi-mi:"MI:0435"(protease assay)	Murthy et al. (2014)	pubmed:24553140|imex:IM-23538	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0570"(protein cleavage)	psi-mi:"MI:0469"(IntAct)	intact:EBI-10042823|imex:IM-23538-3	-	-	psi-mi:"MI:0502"(enzyme target)	psi-mi:"MI:0501"(enzyme)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001177195.1|refseq:NP_001177196.1|refseq:NP_060444.3|refseq:NP_110430.5|refseq:NP_942593.2|dip:DIP-27552N|dip:DIP-50290N|ensembl:ENSG00000085978(gene)|ensembl:ENSG00000281089(gene)|ensembl:ENST00000392017(transcript)|ensembl:ENST00000625501(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0000421"(autophagosome membrane)|go:"GO:0005776"(autophagosome)|go:"GO:0005829"(cytosol)|go:"GO:0005930"(axoneme)|go:"GO:0010508"(positive regulation of autophagy)|go:"GO:0015031"(protein transport)|go:"GO:0016236"(macroautophagy)|go:"GO:0019787"(ubiquitin-like protein transferase activity)|go:"GO:0034045"(phagophore assembly site membrane)|go:"GO:0034497"(protein localization to phagophore assembly site)|go:"GO:0039689"(negative stranded viral RNA replication)|go:"GO:0042802"(identical protein binding)|go:"GO:0051020"(GTPase binding)|go:"GO:0061739"(protein lipidation involved in autophagosome assembly)|go:"GO:0098792"(xenophagy)|go:"GO:0120095"(vacuole-isolation membrane contact site)|interpro:IPR001680(WD40 repeat)|interpro:IPR013923(Autophagy protein 16)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR019775|interpro:IPR020472|interpro:IPR036322|mint:Q676U5|rcsb pdb:4GDK|rcsb pdb:4GDL|rcsb pdb:4NAW|rcsb pdb:4TQ0|rcsb pdb:5D7G|rcsb pdb:5NPV|rcsb pdb:5NPW|rcsb pdb:5NUV|rcsb pdb:5ZYX|reactome:R-HSA-1632852	refseq:NP_001214.1|refseq:NP_150634.1|refseq:NP_150635.1|refseq:NP_150636.1|refseq:NP_150637.1|refseq:NP_001244047.1|refseq:NP_001244048.1|dip:DIP-175N|rcsb pdb:5FNA|rcsb pdb:5MMV|rcsb pdb:5MTK|rcsb pdb:6BZ9|rcsb pdb:6F6R|rcsb pdb:6KN0|rcsb pdb:6PZP|rcsb pdb:6VIE|rcsb pdb:7KEU|reactome:R-HSA-168638|reactome:R-HSA-448706|reactome:R-HSA-5620971|reactome:R-HSA-6803207|reactome:R-HSA-844456|reactome:R-HSA-844615|reactome:R-HSA-844623|reactome:R-HSA-9008059|reactome:R-HSA-9660826|ensembl:ENSG00000137752(gene)|ensembl:ENST00000436863(transcript)|ensembl:ENST00000533400(transcript)|go:"GO:0001666"(response to hypoxia)|go:"GO:0004175"(endopeptidase activity)|go:"GO:0004197"(cysteine-type endopeptidase activity)|go:"GO:0005576"(extracellular region)|go:"GO:0005737"(cytoplasm)|go:"GO:0005739"(mitochondrion)|go:"GO:0005829"(cytosol)|go:"GO:0005886"(plasma membrane)|go:"GO:0006508"(proteolysis)|go:"GO:0006915"(apoptotic process)|go:"GO:0007165"(signal transduction)|go:"GO:0008656"(cysteine-type endopeptidase activator activity involved in apoptotic process)|go:"GO:0010506"(regulation of autophagy)|go:"GO:0016540"(protein autoprocessing)|go:"GO:0019900"(kinase binding)|go:"GO:0032730"(positive regulation of interleukin-1 alpha production)|go:"GO:0032731"(positive regulation of interleukin-1 beta production)|go:"GO:0032991"(protein-containing complex)|go:"GO:0033198"(response to ATP)|go:"GO:0042802"(identical protein binding)|go:"GO:0042981"(regulation of apoptotic process)|go:"GO:0043123"(positive regulation of I-kappaB kinase/NF-kappaB signaling)|go:"GO:0043280"(positive regulation of cysteine-type endopeptidase activity involved in apoptotic process)|go:"GO:0050700"(CARD domain binding)|go:"GO:0050727"(regulation of inflammatory response)|go:"GO:0050829"(defense response to Gram-negative bacterium)|go:"GO:0051882"(mitochondrial depolarization)|go:"GO:0060081"(membrane hyperpolarization)|go:"GO:0070269"(pyroptosis)|go:"GO:0071222"(cellular response to lipopolysaccharide)|go:"GO:0071260"(cellular response to mechanical stimulus)|go:"GO:0071310"(cellular response to organic substance)|go:"GO:0071346"(cellular response to interferon-gamma)|go:"GO:0072557"(IPAF inflammasome complex)|go:"GO:0072558"(NLRP1 inflammasome complex)|go:"GO:0072559"(NLRP3 inflammasome complex)|go:"GO:0097169"(AIM2 inflammasome complex)|go:"GO:0097179"(protease inhibitor complex)|go:"GO:0097194"(execution phase of apoptosis)|go:"GO:0097199"(cysteine-type endopeptidase activity involved in apoptotic signaling pathway)|go:"GO:0097300"(programmed necrotic cell death)|go:"GO:0140447"(cytokine precursor processing)|go:"GO:0140448"(signaling receptor ligand precursor processing)|go:"GO:1901998"(toxin transport)|go:"GO:1903265"(positive regulation of tumor necrosis factor-mediated signaling pathway)|interpro:IPR001309(Peptidase C14, ICE, catalytic subunit p20)|interpro:IPR001315(Caspase Recruitment)|interpro:IPR002138(Peptidase C14, caspase non-catalytic subunit p10)|interpro:IPR002398(Peptidase C14, caspase precursor p45)|interpro:IPR011029(DEATH-like)|interpro:IPR015917(Peptidase C14, caspase precursor p45, core)|interpro:IPR016129(Peptidase C14, ICE, catalytic subunit p20, active site)|interpro:IPR029030|interpro:IPR033139|rcsb pdb:1BMQ|rcsb pdb:1IBC|rcsb pdb:1ICE|rcsb pdb:1RWK|rcsb pdb:1RWM|rcsb pdb:1RWN|rcsb pdb:1RWO|rcsb pdb:1RWP|rcsb pdb:1RWV|rcsb pdb:1RWW|rcsb pdb:1RWX|rcsb pdb:1SC1|rcsb pdb:1SC3|rcsb pdb:1SC4|rcsb pdb:2FQQ|rcsb pdb:2H48|rcsb pdb:2H4W|rcsb pdb:2H4Y|rcsb pdb:2H51|rcsb pdb:2H54|rcsb pdb:2HBQ|rcsb pdb:2HBR|rcsb pdb:2HBY|rcsb pdb:2HBZ|rcsb pdb:3D6F|rcsb pdb:3D6H|rcsb pdb:3D6M|rcsb pdb:3E4C|rcsb pdb:3NS7	go:"GO:0006508"(proteolysis)|go:"GO:0008233"(peptidase activity)	-	-	figure legend:Extended data fig. 1a|causality statement:P29466 is required for cleavage of Q676U5|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|dataset:IBD - Inflammatory bowel disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/12/05	2014/12/15	rogid:rLwpmIwMwd/GgPJA+7OKYTnn73E9606	rogid:fNWee65mDN6re+Zks1Z1WAbwZL89606	intact-crc:220CB11C77E30121|rigid:kP479IqT3o7yiwd9jM4tt4JvKEg	false	mutation increasing interaction rate:300-300|v5 tag:c-c	-	-	-	psi-mi:"MI:0705"(anti tag western blot)	psi-mi:"MI:0705"(anti tag western blot)
uniprotkb:P55212	uniprotkb:Q676U5	intact:EBI-718729|uniprotkb:Q9BQE7|ensembl:ENSP00000265164	intact:EBI-535909|uniprotkb:Q6IPN1|uniprotkb:Q6UXW4|uniprotkb:Q6ZVZ5|uniprotkb:Q8NCY2|uniprotkb:Q96JV5|uniprotkb:Q9H619|uniprotkb:A3EXK9|uniprotkb:A3EXL0|uniprotkb:B6ZDH0|ensembl:ENSP00000375872|ensembl:ENSP00000487542	psi-mi:casp6_human(display_long)|uniprotkb:Apoptotic protease Mch-2(gene name synonym)|uniprotkb:CASP6(gene name)|psi-mi:CASP6(display_short)|uniprotkb:MCH2(gene name synonym)	psi-mi:a16l1_human(display_long)|uniprotkb:APG16-like 1(gene name synonym)|uniprotkb:UNQ9393/PRO34307(orf name)|uniprotkb:ATG16L1(gene name)|psi-mi:ATG16L1(display_short)|uniprotkb:APG16L(gene name synonym)	psi-mi:"MI:0435"(protease assay)	Murthy et al. (2014)	pubmed:24553140|imex:IM-23538	taxid:9606(human)|taxid:9606(Homo sapiens)	taxid:9606(human)|taxid:9606(Homo sapiens)	psi-mi:"MI:0570"(protein cleavage)	psi-mi:"MI:0469"(IntAct)	intact:EBI-10042845|imex:IM-23538-4	-	-	psi-mi:"MI:0501"(enzyme)	psi-mi:"MI:0502"(enzyme target)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_001217.2|refseq:NP_116787.1|rcsb pdb:3K7E|rcsb pdb:3NKF|rcsb pdb:3NR2|rcsb pdb:3OD5|rcsb pdb:3P45|rcsb pdb:3P4U|rcsb pdb:3QNW|rcsb pdb:3S70|rcsb pdb:3S8E|rcsb pdb:3V6L|rcsb pdb:3V6M|rcsb pdb:4EJF|rcsb pdb:4FXO|rcsb pdb:4HVA|rcsb pdb:4IYR|rcsb pdb:4N5D|rcsb pdb:4N6G|rcsb pdb:4N7J|rcsb pdb:4N7M|rcsb pdb:4NBK|rcsb pdb:4NBL|rcsb pdb:4NBN|rcsb pdb:6DEU|rcsb pdb:6DEV|reactome:R-HSA-111465|reactome:R-HSA-264870|reactome:R-HSA-352238|reactome:R-HSA-6803207|ensembl:ENSG00000138794(gene)|ensembl:ENST00000265164(transcript)|go:"GO:0004197"(cysteine-type endopeptidase activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006508"(proteolysis)|go:"GO:0006915"(apoptotic process)|go:"GO:0008234"(cysteine-type peptidase activity)|go:"GO:0030855"(epithelial cell differentiation)|go:"GO:0042802"(identical protein binding)|go:"GO:0072734"(cellular response to staurosporine)|go:"GO:0097153"(cysteine-type endopeptidase activity involved in apoptotic process)|go:"GO:0097200"(cysteine-type endopeptidase activity involved in execution phase of apoptosis)|interpro:IPR001309(Peptidase C14, ICE, catalytic subunit p20)|interpro:IPR002138(Peptidase C14, caspase non-catalytic subunit p10)|interpro:IPR002398(Peptidase C14, caspase precursor p45)|interpro:IPR015917(Peptidase C14, caspase precursor p45, core)|interpro:IPR016129(Peptidase C14, ICE, catalytic subunit p20, active site)|interpro:IPR029030|interpro:IPR033139|interpro:IPR037554|mint:P55212|rcsb pdb:1MI9|rcsb pdb:2WDP|dip:DIP-44649N	refseq:NP_001177195.1|refseq:NP_001177196.1|refseq:NP_060444.3|refseq:NP_110430.5|refseq:NP_942593.2|dip:DIP-27552N|dip:DIP-50290N|ensembl:ENSG00000085978(gene)|ensembl:ENSG00000281089(gene)|ensembl:ENST00000392017(transcript)|ensembl:ENST00000625501(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0000421"(autophagosome membrane)|go:"GO:0005776"(autophagosome)|go:"GO:0005829"(cytosol)|go:"GO:0005930"(axoneme)|go:"GO:0010508"(positive regulation of autophagy)|go:"GO:0015031"(protein transport)|go:"GO:0016236"(macroautophagy)|go:"GO:0019787"(ubiquitin-like protein transferase activity)|go:"GO:0034045"(phagophore assembly site membrane)|go:"GO:0034497"(protein localization to phagophore assembly site)|go:"GO:0039689"(negative stranded viral RNA replication)|go:"GO:0042802"(identical protein binding)|go:"GO:0051020"(GTPase binding)|go:"GO:0061739"(protein lipidation involved in autophagosome assembly)|go:"GO:0098792"(xenophagy)|go:"GO:0120095"(vacuole-isolation membrane contact site)|interpro:IPR001680(WD40 repeat)|interpro:IPR013923(Autophagy protein 16)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR019775|interpro:IPR020472|interpro:IPR036322|mint:Q676U5|rcsb pdb:4GDK|rcsb pdb:4GDL|rcsb pdb:4NAW|rcsb pdb:4TQ0|rcsb pdb:5D7G|rcsb pdb:5NPV|rcsb pdb:5NPW|rcsb pdb:5NUV|rcsb pdb:5ZYX|reactome:R-HSA-1632852	go:"GO:0006508"(proteolysis)|go:"GO:0008233"(peptidase activity)	-	-	figure legend:Extended data fig. 1a|causality statement:P55212 is required for cleavage of Q676U5|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|dataset:IBD - Inflammatory bowel disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2014/12/05	2014/12/15	rogid:x335dTT6omZBrEGs7jzxOjUWaNM9606	rogid:rLwpmIwMwd/GgPJA+7OKYTnn73E9606	intact-crc:49DAB6BEAC410C12|rigid:a+GISEACoYOwCpg9RbdgLVbHuAI	false	-	v5 tag:c-c|mutation increasing interaction rate:300-300	-	-	psi-mi:"MI:0705"(anti tag western blot)	psi-mi:"MI:0705"(anti tag western blot)
uniprotkb:Q91VR7	uniprotkb:Q8C0J2	intact:EBI-2933755|ensembl:ENSMUSP00000029128|uniprotkb:A2AVS1|uniprotkb:Q9DC74	intact:EBI-769195|uniprotkb:Q80U97|uniprotkb:Q80U98|uniprotkb:Q80U99|uniprotkb:Q80Y53|uniprotkb:Q9DB63|uniprotkb:Q6KAT7|ensembl:ENSMUSP00000027512	psi-mi:mlp3a_mouse(display_long)|uniprotkb:Map1lc3a(gene name)|psi-mi:Map1lc3a(display_short)|uniprotkb:Autophagy-related protein LC3 A(gene name synonym)|uniprotkb:Autophagy-related ubiquitin-like modifier LC3 A(gene name synonym)|uniprotkb:MAP1 light chain 3-like protein 1(gene name synonym)|uniprotkb:MAP1A/MAP1B light chain 3 A(gene name synonym)|uniprotkb:Microtubule-associated protein 1 light chain 3 alpha(gene name synonym)	psi-mi:a16l1_mouse(display_long)|uniprotkb:APG16-like 1(gene name synonym)|uniprotkb:Atg16l1(gene name)|psi-mi:Atg16l1(display_short)|uniprotkb:Apg16l(gene name synonym)	psi-mi:"MI:0416"(fluorescence microscopy)	Murthy et al. (2014)	pubmed:24553140|imex:IM-23538	taxid:10090(mouse)|taxid:10090(Mus musculus)	taxid:10090(mouse)|taxid:10090(Mus musculus)	psi-mi:"MI:0403"(colocalization)	psi-mi:"MI:0469"(IntAct)	intact:EBI-9998509|imex:IM-23538-2	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensembl:ENSMUSG00000027602(gene)|ensembl:ENSMUST00000029128(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0000421"(autophagosome membrane)|go:"GO:0000422"(autophagy of mitochondrion)|go:"GO:0005543"(phospholipid binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005770"(late endosome)|go:"GO:0005776"(autophagosome)|go:"GO:0005829"(cytosol)|go:"GO:0005874"(microtubule)|go:"GO:0006914"(autophagy)|go:"GO:0006995"(cellular response to nitrogen starvation)|go:"GO:0008017"(microtubule binding)|go:"GO:0008429"(phosphatidylethanolamine binding)|go:"GO:0009267"(cellular response to starvation)|go:"GO:0010040"("response to iron(II) ion")|go:"GO:0010288"(response to lead ion)|go:"GO:0016236"(macroautophagy)|go:"GO:0031090"(organelle membrane)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0034198"(cellular response to amino acid starvation)|go:"GO:0043231"(intracellular membrane-bounded organelle)|go:"GO:0043278"(response to morphine)|go:"GO:0044754"(autolysosome)|go:"GO:0045202"(synapse)|go:"GO:0070301"(cellular response to hydrogen peroxide)|go:"GO:0071280"(cellular response to copper ion)|go:"GO:0097352"(autophagosome maturation)|interpro:IPR004241("Light chain 3 (LC3)")|interpro:IPR029071|mint:Q91VR7|reactome:R-MMU-1632852|reactome:R-MMU-5205685|reactome:R-MMU-8934903|go:"GO:0015630"(microtubule cytoskeleton)|refseq:NP_080011.1	refseq:NP_001192320.1|refseq:NP_084122.2|dip:DIP-31966N|ensembl:ENSMUSG00000026289(gene)|ensembl:ENSMUST00000027512(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0000421"(autophagosome membrane)|go:"GO:0005776"(autophagosome)|go:"GO:0005829"(cytosol)|go:"GO:0005930"(axoneme)|go:"GO:0010508"(positive regulation of autophagy)|go:"GO:0015031"(protein transport)|go:"GO:0034045"(phagophore assembly site membrane)|go:"GO:0034497"(protein localization to phagophore assembly site)|go:"GO:0039689"(negative stranded viral RNA replication)|go:"GO:0042802"(identical protein binding)|go:"GO:0051020"(GTPase binding)|go:"GO:0061739"(protein lipidation involved in autophagosome assembly)|go:"GO:0098792"(xenophagy)|go:"GO:0120095"(vacuole-isolation membrane contact site)|interpro:IPR001680(WD40 repeat)|interpro:IPR013923(Autophagy protein 16)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR019775|interpro:IPR020472|interpro:IPR036322|mint:Q8C0J2|rcsb pdb:6SUR|rcsb pdb:6Y09|rcsb pdb:6ZAY|reactome:R-MMU-1632852	-	-	-	figure legend:Fig. 3a|dataset:Crohn's disease - Interactions of proteins identified as having a link to Crohn's disease|dataset:IBD - Inflammatory bowel disease|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:10090(mouse-macrophage)|taxid:10090(Mus musculus macrophage)	-	2014/12/05	2014/12/08	rogid:qtZ3YM26FhxTs/gW+KFMllsVhn410090	rogid:gVwCDGIxRkSzS3z9wAWLdRDAZjo10090	intact-crc:C1E4BFFC12A3098F|rigid:ZbzVoYcPsbH2Yv4fZiOw6CIcaKw	false	-	mutation decreasing interaction:300-300	-	-	psi-mi:"MI:0422"(immunostaining)	psi-mi:"MI:0422"(immunostaining)