#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:Q8GZM7 uniprotkb:Q8GZM7 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565170|imex:IM-16978-1 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:no figure|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:9D9439384E460B11|rigid:VGRuPWmMOiATbRhBPsy0qbAR4aQ false - sufficient binding region:150-478 - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q8GZM7 uniprotkb:O80536 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565233|imex:IM-16978-2 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N - - - figure legend:no figure|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 intact-crc:B4C223CC50160D0A|rigid:JmpKxSSEQrET3Id0RXCaQ3355qk false sufficient binding region:150-478 - - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q8GZM7 uniprotkb:Q9FE22 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-626001|uniprotkb:Q9FZ26|ensemblplants:AT1G02340.1|uniprotkb:Q8GZ25 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:hfr1_arath(display_long)|uniprotkb:Transcription factor EN 68(gene name synonym)|uniprotkb:bHLH transcription factor bHLH026(gene name synonym)|uniprotkb:HFR1(gene name)|psi-mi:HFR1(display_short)|uniprotkb:BHLH26(gene name synonym)|uniprotkb:EN68(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 26(gene name synonym)|uniprotkb:Reduced sensitivity to far-red light(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL IN FAR-RED 1(gene name synonym)|uniprotkb:FBI1(gene name synonym)|uniprotkb:Protein REDUCED PHYTOCHROME SIGNALING(gene name synonym)|uniprotkb:REP1(gene name synonym)|uniprotkb:RSF1(gene name synonym)|uniprotkb:At1g02340(locus name)|uniprotkb:T6A9.4(orf name)|uniprotkb:T6A9_13(orf name) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565476|imex:IM-16978-3 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N ensemblplants:AT1G02340(gene)|ensemblplants:AT1G02340.1(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003712"(transcription coregulator activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009642"(response to light intensity)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0010218"(response to far red light)|go:"GO:0046983"(protein dimerization activity)|rcsb pdb:6QTV|go:"GO:0009785"(blue light signaling pathway)|refseq:NP_563650.1|interpro:IPR011598(Helix-loop-helix DNA-binding)|mint:Q9FE22|interpro:IPR036638|interpro:IPR031066 - - - figure legend:no figure|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:+Fbb3Lom6LwpbE+VdnLrFiLpWis3702 intact-crc:9768267778A227A9|rigid:DRLuHgTV/E7MZf0qnnsVrO4eZ/Y false sufficient binding region:150-478 - - - psi-mi:"MI:0078"(nucleotide sequence identification) psi-mi:"MI:0078"(nucleotide sequence identification) uniprotkb:Q8GZM7 uniprotkb:Q9FE22 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-626001|uniprotkb:Q9FZ26|ensemblplants:AT1G02340.1|uniprotkb:Q8GZ25 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:hfr1_arath(display_long)|uniprotkb:Transcription factor EN 68(gene name synonym)|uniprotkb:bHLH transcription factor bHLH026(gene name synonym)|uniprotkb:HFR1(gene name)|psi-mi:HFR1(display_short)|uniprotkb:BHLH26(gene name synonym)|uniprotkb:EN68(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 26(gene name synonym)|uniprotkb:Reduced sensitivity to far-red light(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL IN FAR-RED 1(gene name synonym)|uniprotkb:FBI1(gene name synonym)|uniprotkb:Protein REDUCED PHYTOCHROME SIGNALING(gene name synonym)|uniprotkb:REP1(gene name synonym)|uniprotkb:RSF1(gene name synonym)|uniprotkb:At1g02340(locus name)|uniprotkb:T6A9.4(orf name)|uniprotkb:T6A9_13(orf name) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565569|imex:IM-16978-4 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N ensemblplants:AT1G02340(gene)|ensemblplants:AT1G02340.1(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003712"(transcription coregulator activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009642"(response to light intensity)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0010218"(response to far red light)|go:"GO:0046983"(protein dimerization activity)|rcsb pdb:6QTV|go:"GO:0009785"(blue light signaling pathway)|refseq:NP_563650.1|interpro:IPR011598(Helix-loop-helix DNA-binding)|mint:Q9FE22|interpro:IPR036638|interpro:IPR031066 - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:+Fbb3Lom6LwpbE+VdnLrFiLpWis3702 intact-crc:A842A5F902F82F03|rigid:DRLuHgTV/E7MZf0qnnsVrO4eZ/Y false sufficient binding region:150-478 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GZM7 uniprotkb:Q8GZM7 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565570|imex:IM-16978-5 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:377441D5BAF52630|rigid:VGRuPWmMOiATbRhBPsy0qbAR4aQ false - sufficient binding region:150-478 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q84LH8 uniprotkb:Q8GZM7 intact:EBI-631622|uniprotkb:Q8RXG4|uniprotkb:Q8S3D7|uniprotkb:Q9LYT0|ensemblplants:AT3G59060.2|ensemblplants:AT3G59060.3|ensemblplants:AT3G59060.4 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:pif5_arath(display_long)|uniprotkb:PIL6(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 65(gene name synonym)|uniprotkb:Phytochrome interacting factor-like 6(gene name synonym)|uniprotkb:F17J16.110(orf name)|uniprotkb:PIF5(gene name)|psi-mi:PIF5(display_short)|uniprotkb:EN103(gene name synonym)|uniprotkb:Phytochrome-interacting factor 5(gene name synonym)|uniprotkb:At3g59060(locus name)|uniprotkb:Transcription factor EN 103(gene name synonym)|uniprotkb:BHLH65(gene name synonym)|uniprotkb:bHLH transcription factor bHLH065(gene name synonym) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565674|imex:IM-16978-10 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001030889.1|refseq:NP_001030890.1|refseq:NP_191465.3|refseq:NP_851021.1|interpro:IPR011598(Helix-loop-helix DNA-binding)|ensemblplants:AT3G59060(gene)|ensemblplants:AT3G59060.2(transcript)|ensemblplants:AT3G59060.3(transcript)|ensemblplants:AT3G59060.4(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009693"(ethylene biosynthetic process)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010600"(regulation of auxin biosynthetic process)|go:"GO:0010928"(regulation of auxin mediated signaling pathway)|go:"GO:0046983"(protein dimerization activity)|go:"GO:1990841"(promoter-specific chromatin binding)|mint:Q84LH8|interpro:IPR036638|interpro:IPR031066 refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:kzMCs9jS10y7tahte9m+3yEdf803702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:E1D76539C0383D5F|rigid:+vPVGmymAStdjorFGdA9WKkDyf0 false sufficient binding region:151-444 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GZM7 uniprotkb:O80536 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565640|imex:IM-16978-9 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 intact-crc:6D4C513B0FC0F5F3|rigid:JmpKxSSEQrET3Id0RXCaQ3355qk false - sufficient binding region:64-524 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GZM7 uniprotkb:Q9FE22 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-626001|uniprotkb:Q9FZ26|ensemblplants:AT1G02340.1|uniprotkb:Q8GZ25 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:hfr1_arath(display_long)|uniprotkb:Transcription factor EN 68(gene name synonym)|uniprotkb:bHLH transcription factor bHLH026(gene name synonym)|uniprotkb:HFR1(gene name)|psi-mi:HFR1(display_short)|uniprotkb:BHLH26(gene name synonym)|uniprotkb:EN68(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 26(gene name synonym)|uniprotkb:Reduced sensitivity to far-red light(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL IN FAR-RED 1(gene name synonym)|uniprotkb:FBI1(gene name synonym)|uniprotkb:Protein REDUCED PHYTOCHROME SIGNALING(gene name synonym)|uniprotkb:REP1(gene name synonym)|uniprotkb:RSF1(gene name synonym)|uniprotkb:At1g02340(locus name)|uniprotkb:T6A9.4(orf name)|uniprotkb:T6A9_13(orf name) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565763|imex:IM-16978-13 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N ensemblplants:AT1G02340(gene)|ensemblplants:AT1G02340.1(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0003712"(transcription coregulator activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009642"(response to light intensity)|go:"GO:0009738"(abscisic acid-activated signaling pathway)|go:"GO:0010218"(response to far red light)|go:"GO:0046983"(protein dimerization activity)|rcsb pdb:6QTV|go:"GO:0009785"(blue light signaling pathway)|refseq:NP_563650.1|interpro:IPR011598(Helix-loop-helix DNA-binding)|mint:Q9FE22|interpro:IPR036638|interpro:IPR031066 - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:+Fbb3Lom6LwpbE+VdnLrFiLpWis3702 intact-crc:FACCA7758CFB4B78|rigid:DRLuHgTV/E7MZf0qnnsVrO4eZ/Y false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q84LH8 uniprotkb:Q8GZM7 intact:EBI-631622|uniprotkb:Q8RXG4|uniprotkb:Q8S3D7|uniprotkb:Q9LYT0|ensemblplants:AT3G59060.2|ensemblplants:AT3G59060.3|ensemblplants:AT3G59060.4 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:pif5_arath(display_long)|uniprotkb:PIL6(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 65(gene name synonym)|uniprotkb:Phytochrome interacting factor-like 6(gene name synonym)|uniprotkb:F17J16.110(orf name)|uniprotkb:PIF5(gene name)|psi-mi:PIF5(display_short)|uniprotkb:EN103(gene name synonym)|uniprotkb:Phytochrome-interacting factor 5(gene name synonym)|uniprotkb:At3g59060(locus name)|uniprotkb:Transcription factor EN 103(gene name synonym)|uniprotkb:BHLH65(gene name synonym)|uniprotkb:bHLH transcription factor bHLH065(gene name synonym) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565618|imex:IM-16978-8 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001030889.1|refseq:NP_001030890.1|refseq:NP_191465.3|refseq:NP_851021.1|interpro:IPR011598(Helix-loop-helix DNA-binding)|ensemblplants:AT3G59060(gene)|ensemblplants:AT3G59060.2(transcript)|ensemblplants:AT3G59060.3(transcript)|ensemblplants:AT3G59060.4(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009693"(ethylene biosynthetic process)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010600"(regulation of auxin biosynthetic process)|go:"GO:0010928"(regulation of auxin mediated signaling pathway)|go:"GO:0046983"(protein dimerization activity)|go:"GO:1990841"(promoter-specific chromatin binding)|mint:Q84LH8|interpro:IPR036638|interpro:IPR031066 refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:kzMCs9jS10y7tahte9m+3yEdf803702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:8FF125D16E3A9BD8|rigid:+vPVGmymAStdjorFGdA9WKkDyf0 false - sufficient binding region:150-478 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GZM7 uniprotkb:Q8W2F3 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-625716|uniprotkb:Q9C5I8|uniprotkb:Q9SKX6|uniprotkb:A5Y7D4|uniprotkb:A5Y7D5|uniprotkb:A5Y7D6|uniprotkb:A5Y7D7|uniprotkb:A5Y7D8|uniprotkb:A5Y7D9|uniprotkb:A5Y7E0|uniprotkb:A5Y7E1|uniprotkb:A5Y7E2|uniprotkb:A5Y7E3|uniprotkb:A5Y7E4|uniprotkb:A5Y7E5|uniprotkb:A5Y7E6|uniprotkb:A5Y7E7|ensemblplants:AT2G43010.1 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:pif4_arath(display_long)|uniprotkb:Transcription factor EN 102(gene name synonym)|uniprotkb:bHLH transcription factor bHLH009(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 9(gene name synonym)|uniprotkb:Short under red-light 2(gene name synonym)|uniprotkb:PIF4(gene name)|psi-mi:PIF4(display_short)|uniprotkb:BHLH9(gene name synonym)|uniprotkb:SRL2(gene name synonym)|uniprotkb:At2g43010(locus name)|uniprotkb:MFL8.13(orf name)|uniprotkb:EN102(gene name synonym)|uniprotkb:Phytochrome-interacting factor 4(gene name synonym) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565604|imex:IM-16978-7 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N ensemblplants:AT2G43010(gene)|ensemblplants:AT2G43010.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009638"(phototropism)|go:"GO:0009704"(de-etiolation)|go:"GO:0010017"(red or far-red light signaling pathway)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010600"(regulation of auxin biosynthetic process)|go:"GO:0010928"(regulation of auxin mediated signaling pathway)|go:"GO:0046983"(protein dimerization activity)|go:"GO:1990841"(promoter-specific chromatin binding)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_565991.2|mint:Q8W2F3|dip:DIP-33903N - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:+RUYwY4UrdYuWvvJCs70kIm4as03702 intact-crc:41DA7E448E27ABD7|rigid:Knl2y5wpUtsuHi9wkpECjjhRI+4 false sufficient binding region:150-478 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GZM7 uniprotkb:O80536 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565571|imex:IM-16978-6 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 intact-crc:036A11D3A1C25374|rigid:JmpKxSSEQrET3Id0RXCaQ3355qk false sufficient binding region:150-478 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q570R7 uniprotkb:Q8GZM7 intact:EBI-1638784|uniprotkb:Q7XJ93|uniprotkb:Q9FLK6|ensemblplants:AT5G61270.1 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:pif7_arath(display_long)|uniprotkb:BHLH72(gene name)|psi-mi:BHLH72(display_short)|uniprotkb:EN109(gene name synonym)|uniprotkb:Phytochrome-interacting factor 7(gene name synonym)|uniprotkb:Transcription factor EN 109(gene name synonym)|uniprotkb:bHLH transcription factor bHLH072(gene name synonym)|uniprotkb:PIF7(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 72(gene name synonym)|uniprotkb:MFB13.4(orf name)|uniprotkb:At5g61270(locus name) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565746|imex:IM-16978-12 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001032117.1|refseq:NP_200935.2|interpro:IPR011598(Helix-loop-helix DNA-binding)|refseq:NP_001331793.1|interpro:IPR036638|interpro:IPR031066|ensemblplants:AT5G61270(gene)|ensemblplants:AT5G61270.1(transcript)|go:"GO:0003690"(double-stranded DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009416"(response to light stimulus)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009704"(de-etiolation)|go:"GO:0016607"(nuclear speck)|go:"GO:0046983"(protein dimerization activity) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:0ZUTJ21J267jl7syOTy5fsxqxoM3702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:D906641553452C0E|rigid:qz+mDj5LAFLWkZQAx6tvexGMG+Q false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8L5W7 uniprotkb:Q8GZM7 intact:EBI-631639|uniprotkb:A8MSC2|uniprotkb:Q9M1R5|ensemblplants:AT3G62090.2 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:pif6_arath(display_long)|uniprotkb:PIF6(gene name)|psi-mi:PIF6(display_short)|uniprotkb:Transcription factor EN 111(gene name synonym)|uniprotkb:bHLH transcription factor bHLH132(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 132(gene name synonym)|uniprotkb:T17J13.50(orf name)|uniprotkb:At3g62090(locus name)|uniprotkb:BHLH132(gene name synonym)|uniprotkb:EN111(gene name synonym)|uniprotkb:PIL2(gene name synonym)|uniprotkb:Protein PHYTOCHROME-INTERACTING FACTOR 6(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 2(gene name synonym) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5565735|imex:IM-16978-11 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001078329.1|refseq:NP_191768.2|interpro:IPR011598(Helix-loop-helix DNA-binding)|ensemblplants:AT3G62090(gene)|ensemblplants:AT3G62090.2(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0010017"(red or far-red light signaling pathway)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR036638|interpro:IPR031066 refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:nVJsl1CrbVQixnCZotOTofW2ni83702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:BF04E811D462BB3A|rigid:Kxe1F6huQ1wxqF9WTvynX+RYpaM false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O80536 uniprotkb:Q8GZM7 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0407"(direct interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-5565847|imex:IM-16978-14 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:Fig. 2A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2012/02/17 2014/10/16 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:A0DDADD710791F7B|rigid:JmpKxSSEQrET3Id0RXCaQ3355qk false 35s radiolabel:?-? gal4 activation domain:?-?|35s radiolabel:?-? - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GZM7 uniprotkb:O80536 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0407"(direct interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-5565918|imex:IM-16978-17 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N - - - figure legend:Fig. 2A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 intact-crc:E115CF4FEFABE8BF|rigid:JmpKxSSEQrET3Id0RXCaQ3355qk false 35s radiolabel:?-? gal4 activation domain:?-?|35s radiolabel:?-? - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GZM7 uniprotkb:Q8GZM7 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0407"(direct interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-5565880|imex:IM-16978-15 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:Fig. 2A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2012/02/17 2014/10/16 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:6BCB0B7AD24F04CC|rigid:VGRuPWmMOiATbRhBPsy0qbAR4aQ false gal4 activation domain:?-?|35s radiolabel:?-? 35s radiolabel:?-? - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O80536 uniprotkb:O80536 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0407"(direct interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-5565899|imex:IM-16978-16 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N - - - figure legend:Fig. 2A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2012/02/17 2014/10/16 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 intact-crc:50914D72AA815178|rigid:9cvIE8jZnwW5rK7Rr2uxG7+CZ34 false gal4 activation domain:?-?|35s radiolabel:?-? 35s radiolabel:?-? - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O80536 uniprotkb:Q8GZM7 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5566093|imex:IM-16978-18 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:Fig. 2B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-seedling)|taxid:3702(Arabidopsis thaliana) - 2012/02/17 2014/10/16 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:DEACB17DCC1011DD|rigid:JmpKxSSEQrET3Id0RXCaQ3355qk false yellow fluorescent protein tag:?-? calmodulin binding peptide plus protein a tag:?-? - - psi-mi:"MI:0705"(anti tag western blot) psi-mi:"MI:0705"(anti tag western blot) uniprotkb:O80536 uniprotkb:P59263 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 intact:EBI-1541543|uniprotkb:Q9S7X3|uniprotkb:O80715|uniprotkb:Q38875|uniprotkb:Q9LDJ2|uniprotkb:Q9LYW1|uniprotkb:Q9M0W3|uniprotkb:Q9M1P9|dip:DIP-59616N psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:ubiq_arath(display_long)|uniprotkb:UBQ1(gene name)|psi-mi:UBQ1(display_short)|uniprotkb:UBQ2(gene name)|psi-mi:UBQ2(display_short)|uniprotkb:UBQ3(gene name)|psi-mi:UBQ3(display_short)|uniprotkb:UBQ4(gene name)|psi-mi:UBQ4(display_short)|uniprotkb:UBQ5(gene name)|psi-mi:UBQ5(display_short)|uniprotkb:UBQ6(gene name)|psi-mi:UBQ6(display_short)|uniprotkb:UBQ7(gene name)|psi-mi:UBQ7(display_short)|uniprotkb:UBQ10(gene name)|psi-mi:UBQ10(display_short)|uniprotkb:UBQ11(gene name)|psi-mi:UBQ11(display_short)|uniprotkb:UBQ14(gene name)|psi-mi:UBQ14(display_short)|uniprotkb:UBQ15(gene name)|psi-mi:UBQ15(display_short)|uniprotkb:UBQ16(gene name)|psi-mi:UBQ16(display_short)|uniprotkb:RPL40B(gene name synonym)|uniprotkb:RPL40A(gene name synonym)|uniprotkb:RPS27AC(gene name synonym)|uniprotkb:RPS27AB(gene name synonym)|uniprotkb:RUB2(gene name synonym)|uniprotkb:RUB1(gene name synonym)|uniprotkb:RPS27AA(gene name synonym)|uniprotkb:F3C22.8(orf name)|uniprotkb:F22O6_30(orf name)|uniprotkb:F9C22.10(orf name)|uniprotkb:F15A17_270(orf name)|uniprotkb:MOK16.15(orf name)|uniprotkb:T1M15.20(orf name)|uniprotkb:T17J13.210(orf name)|uniprotkb:F14M4.6(orf name)|uniprotkb:T20F21.24(orf name)|uniprotkb:C17L7.240(orf name)|uniprotkb:T32N4.13(orf name)|uniprotkb:T5J8.21(orf name)|uniprotkb:T19E23.13(orf name)|uniprotkb:F28C11.5(orf name)|uniprotkb:F26F24.28(orf name)|uniprotkb:At3g52590(locus name)|uniprotkb:At2g36170(locus name)|uniprotkb:At5g03240(locus name)|uniprotkb:At5g20620(locus name)|uniprotkb:At3g62250(locus name)|uniprotkb:At2g47110(locus name)|uniprotkb:At2g35635(locus name)|uniprotkb:At4g05320(locus name)|uniprotkb:At4g05050(locus name)|uniprotkb:At4g02890(locus name)|uniprotkb:At1g31340(locus name)|uniprotkb:At1g23410(locus name) psi-mi:"MI:0096"(pull down) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5566304|imex:IM-16978-19 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N interpro:IPR000626(Ubiquitin)|refseq:NP_001031585.1|refseq:NP_001031824.1|refseq:NP_001118922.1|refseq:NP_001118936.1|refseq:NP_173755.1|go:"GO:0022625"(cytosolic large ribosomal subunit)|go:"GO:0022627"(cytosolic small ribosomal subunit)|go:"GO:0005730"(nucleolus)|go:"GO:0005886"(plasma membrane)|go:"GO:0005773"(vacuole)|go:"GO:0005515"(protein binding)|go:"GO:0016567"(protein ubiquitination)|go:"GO:0010224"(response to UV-B)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|ipi:IPI00895658|interpro:IPR019954|interpro:IPR019956|interpro:IPR019955|refseq:NP_191784.1|refseq:NP_564379.2|refseq:NP_565812.1|refseq:NP_565836.1|refseq:NP_566095.1|refseq:NP_566969.1|refseq:NP_567247.2|refseq:NP_567286.1|refseq:NP_568112.2|refseq:NP_568397.1|refseq:NP_849291.1|refseq:NP_849292.1|refseq:NP_849299.4|refseq:NP_849301.4|refseq:NP_851029.1|refseq:NP_974516.4|go:"GO:0009751"(response to salicylic acid) - - - figure legend:Fig. 6B|agonist:Blue light|antagonist:Dark|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-seedling)|taxid:3702(Arabidopsis thaliana) - 2012/02/17 2014/10/16 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 rogid:m1RaCYABZWSryFlc3UqS4AgHbXY3702 intact-crc:E3049DDFC4DDEC04|rigid:eRu9/0eAXBTUNPgqvuvQSfv5c+8 false his tag:n-n|myc tag:c-c 35s radiolabel:?-? - - psi-mi:"MI:0705"(anti tag western blot) psi-mi:"MI:0705"(anti tag western blot) uniprotkb:P14713 uniprotkb:O80536 intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0 intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6 psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name) psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5566450|imex:IM-16978-20 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N - - - figure legend:Fig. 7A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702 rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702 intact-crc:DA7158AFE4D92807|rigid:LfjOPyCnKAsO/qaATKS4ceaU5DQ false sufficient binding region:1-621 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:P14713 uniprotkb:Q8GZM7 intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0 intact:EBI-630400|uniprotkb:Q0WQ83|uniprotkb:Q3EBY0|uniprotkb:Q9SL63|ensemblplants:AT2G20180.2|ensemblplants:AT2G20180.3|ensemblplants:AT2G20180.4|ensemblplants:AT2G20180.6 psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name) psi-mi:pif1_arath(display_long)|uniprotkb:EN101(gene name synonym)|uniprotkb:BHLH15(gene name synonym)|uniprotkb:PIL5(gene name synonym)|uniprotkb:Protein PHY-INTERACTING FACTOR 1(gene name synonym)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5(gene name synonym)|uniprotkb:Transcription factor EN 101(gene name synonym)|uniprotkb:bHLH transcription factor bHLH015(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 15(gene name synonym)|uniprotkb:T2G17.2(orf name)|uniprotkb:At2g20180(locus name)|uniprotkb:PIF1(gene name)|psi-mi:PIF1(display_short) psi-mi:"MI:0018"(two hybrid) Bu et al. (2011) imex:IM-16978|pubmed:21928113 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-5566490|imex:IM-16978-21 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N refseq:NP_001189559.1|refseq:NP_849996.1|ensemblplants:AT2G20180.2(transcript)|ensemblplants:AT2G20180.3(transcript)|ensemblplants:AT2G20180.4(transcript)|ensemblplants:AT2G20180.6(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0006783"(heme biosynthetic process)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0009959"(negative gravitropism)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010099"(regulation of photomorphogenesis)|go:"GO:0010100"(negative regulation of photomorphogenesis)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010187"(negative regulation of seed germination)|go:"GO:0010313"(phytochrome binding)|ensemblplants:AT2G20180(gene)|go:"GO:0015995"(chlorophyll biosynthetic process)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR031066|interpro:IPR036638|refseq:NP_001318252.1|refseq:NP_001323902.1|refseq:NP_001323903.1|refseq:NP_001323904.1|refseq:NP_001323905.1|dip:DIP-61853N - - - figure legend:Fig. 7A|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2012/02/17 2014/10/16 rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702 rogid:xJgPcd2o2VQyfOg6WePAHzJk5w43702 intact-crc:741B6C5BC935D328|rigid:VIL/3M4OjlJQpTNWrtETQ+rDDKM false sufficient binding region:1-621 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant)