#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:P53549	uniprotkb:P33297	intact:EBI-18520|uniprotkb:Q08718|uniprotkb:D6W2W0|ensemblfungi:YOR259C	intact:EBI-13920|uniprotkb:D6W2H6|ensemblfungi:YOR117W	psi-mi:prs10_yeast(display_long)|uniprotkb:RPT4(gene name)|psi-mi:RPT4(display_short)|uniprotkb:CRL13(gene name synonym)|uniprotkb:PCS1(gene name synonym)|uniprotkb:SUG2(gene name synonym)|uniprotkb:26S protease subunit SUG2(gene name synonym)|uniprotkb:Proteasomal cap subunit(gene name synonym)|uniprotkb:YOR259C(locus name)	psi-mi:prs6a_yeast(display_long)|uniprotkb:RPT5(gene name)|psi-mi:RPT5(display_short)|uniprotkb:YTA1(gene name synonym)|uniprotkb:YOR117W(locus name)|uniprotkb:O3258(orf name)|uniprotkb:YOR3258W(orf name)|uniprotkb:Tat-binding protein homolog 1(gene name synonym)	psi-mi:"MI:0071"(molecular sieving)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359484|imex:IM-12191-15	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005785|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:5MPB|ensemblfungi:YOR259C(gene)|ensemblfungi:YOR259C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|refseq:NP_014902.3|dip:DIP-1589N|mint:P53549	sgd:S000005643|rcsb pdb:3WHL|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|rcsb pdb:3WHK|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|ensemblfungi:YOR117W(gene)|ensemblfungi:YOR117W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035254|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|refseq:NP_014760.3|mint:P33297|dip:DIP-1590N	psi-mi:"MI:0469"(intact)	crc64:0EA42A599E2B2E2A	crc64:C215422033FCE830	comment:An antibody to the 20S proteasome core particle was also positive indicating the presence of other proteosome components.|figure legend:Fig. 2C|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:ZWrHVXeF+u+1NSq2hgELa61z4UE559292	rogid:jsQE3SjBA0ZZcysuLgFe/5M6pOc559292	intact-crc:71A2297AAD4F5714|rigid:ALqcv6OrkYHfmkLPBHwpw5h1J7Y	false	-	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P53549	uniprotkb:P38764	intact:EBI-18520|uniprotkb:Q08718|uniprotkb:D6W2W0|ensemblfungi:YOR259C	intact:EBI-15913|uniprotkb:D3DKX4|ensemblfungi:YHR027C	psi-mi:prs10_yeast(display_long)|uniprotkb:RPT4(gene name)|psi-mi:RPT4(display_short)|uniprotkb:CRL13(gene name synonym)|uniprotkb:PCS1(gene name synonym)|uniprotkb:SUG2(gene name synonym)|uniprotkb:26S protease subunit SUG2(gene name synonym)|uniprotkb:Proteasomal cap subunit(gene name synonym)|uniprotkb:YOR259C(locus name)	psi-mi:rpn1_yeast(display_long)|uniprotkb:RPN1(gene name)|psi-mi:RPN1(display_short)|uniprotkb:HRD2(gene name synonym)|uniprotkb:NAS1(gene name synonym)|uniprotkb:RPD1(gene name synonym)|uniprotkb:Proteasome non-ATPase subunit 1(gene name synonym)|uniprotkb:HMG-CoA reductase degradation protein 2(gene name synonym)|uniprotkb:YHR027C(locus name)	psi-mi:"MI:0071"(molecular sieving)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359484|imex:IM-12191-15	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005785|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:5MPB|ensemblfungi:YOR259C(gene)|ensemblfungi:YOR259C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|refseq:NP_014902.3|dip:DIP-1589N|mint:P53549	refseq:NP_011892.1|sgd:S000001069|ensemblfungi:YHR027C(gene)|ensemblfungi:YHR027C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0042176"(regulation of protein catabolic process)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR002015(Proteasome/cyclosome, regulatory subunit)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR016643(26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)|interpro:IPR040892|interpro:IPR041433|rcsb pdb:2N3T|rcsb pdb:2N3U|rcsb pdb:2N3V|rcsb pdb:2N3W|rcsb pdb:2NBW|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|rcsb pdb:6FVU|reactome:R-SCE-983168|rcsb pdb:6FVV|rcsb pdb:6FVW|dip:DIP-2876N|mint:P38764	psi-mi:"MI:0469"(intact)	crc64:0EA42A599E2B2E2A	crc64:B77954F4A998BA7C	comment:An antibody to the 20S proteasome core particle was also positive indicating the presence of other proteosome components.|figure legend:Fig. 2C|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:ZWrHVXeF+u+1NSq2hgELa61z4UE559292	rogid:KZvwC6NNLC/jEW8wXPq2z+EFukY559292	intact-crc:71A2297AAD4F5714|rigid:ALqcv6OrkYHfmkLPBHwpw5h1J7Y	false	-	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P53549	uniprotkb:Q12250	intact:EBI-18520|uniprotkb:Q08718|uniprotkb:D6W2W0|ensemblfungi:YOR259C	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	psi-mi:prs10_yeast(display_long)|uniprotkb:RPT4(gene name)|psi-mi:RPT4(display_short)|uniprotkb:CRL13(gene name synonym)|uniprotkb:PCS1(gene name synonym)|uniprotkb:SUG2(gene name synonym)|uniprotkb:26S protease subunit SUG2(gene name synonym)|uniprotkb:Proteasomal cap subunit(gene name synonym)|uniprotkb:YOR259C(locus name)	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:"MI:0071"(molecular sieving)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359484|imex:IM-12191-15	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005785|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:5MPB|ensemblfungi:YOR259C(gene)|ensemblfungi:YOR259C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|refseq:NP_014902.3|dip:DIP-1589N|mint:P53549	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	psi-mi:"MI:0469"(intact)	crc64:0EA42A599E2B2E2A	crc64:E5DC7F8E6AE27736	comment:An antibody to the 20S proteasome core particle was also positive indicating the presence of other proteosome components.|figure legend:Fig. 2C|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:ZWrHVXeF+u+1NSq2hgELa61z4UE559292	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	intact-crc:71A2297AAD4F5714|rigid:ALqcv6OrkYHfmkLPBHwpw5h1J7Y	false	-	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:Q12250	uniprotkb:Q04062	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	intact:EBI-15944|uniprotkb:D6VT56|ensemblfungi:YDR427W	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:rpn9_yeast(display_long)|uniprotkb:RPN9(gene name)|psi-mi:RPN9(display_short)|uniprotkb:NAS7(gene name synonym)|uniprotkb:YDR427W(locus name)|uniprotkb:D9461.14(orf name)|uniprotkb:Proteasome non-ATPase subunit 7(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359520|imex:IM-12191-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	sgd:S000002835|ensemblfungi:YDR427W(gene)|ensemblfungi:YDR427W_mRNA(transcript)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043248"(proteasome assembly)|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035298|interpro:IPR036390|interpro:IPR040798|rcsb pdb:2MQW|rcsb pdb:2MR3|rcsb pdb:2MRI|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|refseq:NP_010715.3|dip:DIP-5261N|mint:Q04062	psi-mi:"MI:0469"(intact)	crc64:E5DC7F8E6AE27736	crc64:540F7DF8C23469A1	comment:PGK1 was also observed but regarded as a contaminant by the authors.|figure legend:Fig. 3D and Supp. Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	rogid:hOAU0IY1VeRlmtX4Dw3MNJybZaE559292	intact-crc:24BE10D68BC94BEF|rigid:8m+CzfhktiIO3YCVy7Ctqvlx5eY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:Q12250	uniprotkb:Q12377	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	intact:EBI-308|uniprotkb:D6VRQ3|ensemblfungi:YDL097C	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:rpn6_yeast(display_long)|uniprotkb:RPN6(gene name)|psi-mi:RPN6(display_short)|uniprotkb:NAS4(gene name synonym)|uniprotkb:YDL097C(locus name)|uniprotkb:D2381(orf name)|uniprotkb:Proteasome non-ATPase subunit 4(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359520|imex:IM-12191-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	refseq:NP_010186.1|sgd:S000002255|dip:DIP-1581N|mint:Q12377|ensemblfungi:YDL097C(gene)|ensemblfungi:YDL097C_mRNA(transcript)|go:"GO:0005198"(structural molecule activity)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043248"(proteasome assembly)|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR036390|interpro:IPR040773|interpro:IPR040780|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168	psi-mi:"MI:0469"(intact)	crc64:E5DC7F8E6AE27736	crc64:A8B1F7E6F73A4024	comment:PGK1 was also observed but regarded as a contaminant by the authors.|figure legend:Fig. 3D and Supp. Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	rogid:Q7d0N0C4nR9dUZHh+zofzWAF/t8559292	intact-crc:24BE10D68BC94BEF|rigid:8m+CzfhktiIO3YCVy7Ctqvlx5eY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:Q12250	uniprotkb:Q08723	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	intact:EBI-36176|uniprotkb:Q6Q5I7|uniprotkb:D6W2W2|ensemblfungi:YOR261C	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:rpn8_yeast(display_long)|uniprotkb:RPN8(gene name)|psi-mi:RPN8(display_short)|uniprotkb:O5360(orf name)|uniprotkb:YOR261C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359520|imex:IM-12191-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	sgd:S000005787|refseq:NP_014904.3|mint:Q08723|dip:DIP-1574N|ensemblfungi:YOR261C(gene)|ensemblfungi:YOR261C_mRNA(transcript)|go:"GO:0000502"(proteasome complex)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008237"(metallopeptidase activity)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0070122"(isopeptidase activity)|interpro:IPR000555(Mov34/MPN/PAD-1)|interpro:IPR024969|interpro:IPR033858|interpro:IPR037518|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4O8X|rcsb pdb:4O8Y|rcsb pdb:4OCL|rcsb pdb:4OCM|rcsb pdb:4OCN|rcsb pdb:4OWP|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5U4P|rcsb pdb:5W83|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168	psi-mi:"MI:0469"(intact)	crc64:E5DC7F8E6AE27736	crc64:6EE6009545A3D0EF	comment:PGK1 was also observed but regarded as a contaminant by the authors.|figure legend:Fig. 3D and Supp. Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	rogid:kvJ/LyyQGKi5JTh4Fek1kh70jOU559292	intact-crc:24BE10D68BC94BEF|rigid:8m+CzfhktiIO3YCVy7Ctqvlx5eY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:Q12250	uniprotkb:Q12250	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359520|imex:IM-12191-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	psi-mi:"MI:0469"(intact)	crc64:E5DC7F8E6AE27736	crc64:E5DC7F8E6AE27736	comment:PGK1 was also observed but regarded as a contaminant by the authors.|figure legend:Fig. 3D and Supp. Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	intact-crc:24BE10D68BC94BEF|rigid:8m+CzfhktiIO3YCVy7Ctqvlx5eY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:Q12250	uniprotkb:P32496	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	intact:EBI-15953|uniprotkb:D6VTT5|ensemblfungi:YFR052W	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:rpn12_yeast(display_long)|uniprotkb:RPN12(gene name)|psi-mi:RPN12(display_short)|uniprotkb:NIN1(gene name synonym)|uniprotkb:Nuclear integrity protein 1(gene name synonym)|uniprotkb:YFR052W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359520|imex:IM-12191-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	refseq:NP_116710.1|sgd:S000001948|ensemblfungi:YFR052W(gene)|ensemblfungi:YFR052W_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR006746(26S proteasome non-ATPase regulatory subunit Rpn12)|interpro:IPR033464|rcsb pdb:3J47|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:3JCK|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:3JCO|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|rcsb pdb:3JCP|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:4CR2|dip:DIP-1575N|mint:P32496	psi-mi:"MI:0469"(intact)	crc64:E5DC7F8E6AE27736	crc64:D901AAD4D07ED3D1	comment:PGK1 was also observed but regarded as a contaminant by the authors.|figure legend:Fig. 3D and Supp. Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	rogid:CfJpK67fHH3iGDxduaRg+z2hokY559292	intact-crc:24BE10D68BC94BEF|rigid:8m+CzfhktiIO3YCVy7Ctqvlx5eY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:Q12250	uniprotkb:O94742	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	intact:EBI-31337|uniprotkb:D6VSZ2|ensemblfungi:YDR363W-A	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:sem1_yeast(display_long)|uniprotkb:SEM1(gene name)|psi-mi:SEM1(display_short)|uniprotkb:DSH1(gene name synonym)|uniprotkb:YDR363W-A(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359520|imex:IM-12191-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	refseq:NP_010651.3|sgd:S000007235|dip:DIP-8754N|mint:O94742|ensemblfungi:YDR363W-A(gene)|ensemblfungi:YDR363W-A_mRNA(transcript)|go:"GO:0000502"(proteasome complex)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0005829"(cytosol)|go:"GO:0006406"(mRNA export from nucleus)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0016578"(histone deubiquitination)|go:"GO:0030447"(filamentous growth)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0035753"(maintenance of DNA trinucleotide repeats)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043248"(proteasome assembly)|go:"GO:0051726"(regulation of cell cycle)|go:"GO:0070390"(transcription export complex 2)|go:"GO:0072742"(SAGA complex localization to transcription regulatory region)|interpro:IPR007834(DSS1/SEM1)|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:3T5V|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4TRQ|rcsb pdb:5A5B|rcsb pdb:5G5P|rcsb pdb:5L3T|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5UBP|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30	psi-mi:"MI:0469"(intact)	crc64:E5DC7F8E6AE27736	crc64:B66B578ABB01E672	comment:PGK1 was also observed but regarded as a contaminant by the authors.|figure legend:Fig. 3D and Supp. Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	rogid:jW26dMSkSwiSL4WsgtoWcg98j9A559292	intact-crc:24BE10D68BC94BEF|rigid:8m+CzfhktiIO3YCVy7Ctqvlx5eY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:Q12250	uniprotkb:P43588	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	intact:EBI-11219|uniprotkb:Q8J0T5|uniprotkb:D6VTN4|ensemblfungi:YFR004W	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:rpn11_yeast(display_long)|uniprotkb:YFR004W(locus name)|uniprotkb:RPN11(gene name)|psi-mi:RPN11(display_short)|uniprotkb:MPR1(gene name synonym)|uniprotkb:Protein MPR1(gene name synonym)|uniprotkb:26S proteasome regulatory subunit RPN11(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359520|imex:IM-12191-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	ensemblfungi:YFR004W(gene)|ensemblfungi:YFR004W_mRNA(transcript)|go:"GO:0000266"(mitochondrial fission)|go:"GO:0004843"(thiol-dependent deubiquitinase)|go:"GO:0005634"(nucleus)|go:"GO:0005739"(mitochondrion)|go:"GO:0005829"(cytosol)|go:"GO:0008237"(metallopeptidase activity)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0016559"(peroxisome fission)|go:"GO:0016579"(protein deubiquitination)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043248"(proteasome assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0061578"(Lys63-specific deubiquitinase activity)|go:"GO:0070628"(proteasome binding)|go:"GO:1902906"(proteasome storage granule assembly)|interpro:IPR000555(Mov34/MPN/PAD-1)|interpro:IPR024969|interpro:IPR035299|interpro:IPR037518|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4O8X|rcsb pdb:4O8Y|rcsb pdb:4OCL|rcsb pdb:4OCM|go:"GO:0070122"(isopeptidase activity)|rcsb pdb:4OCN|rcsb pdb:4OWP|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5U4P|rcsb pdb:5W83|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-5689901|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|refseq:NP_116659.1|sgd:S000001900|mint:P43588|dip:DIP-1573N	psi-mi:"MI:0469"(intact)	crc64:E5DC7F8E6AE27736	crc64:9DDE8BD74890894D	comment:PGK1 was also observed but regarded as a contaminant by the authors.|figure legend:Fig. 3D and Supp. Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	rogid:f3lAMY9siMcO2dAOfKvVrvKzfNM559292	intact-crc:24BE10D68BC94BEF|rigid:8m+CzfhktiIO3YCVy7Ctqvlx5eY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:Q12250	uniprotkb:Q06103	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	intact:EBI-15940|uniprotkb:D6W4A6|uniprotkb:E9P8W9|ensemblfungi:YPR108W	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:rpn7_yeast(display_long)|uniprotkb:RPN7(gene name)|psi-mi:RPN7(display_short)|uniprotkb:P8283.8(orf name)|uniprotkb:YPR108W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359520|imex:IM-12191-3	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	refseq:NP_015433.1|sgd:S000006312|ensemblfungi:YPR108W(gene)|ensemblfungi:YPR108W_mRNA(transcript)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005634"(nucleus)|go:"GO:0005838"(proteasome regulatory particle)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019585|interpro:IPR019734|interpro:IPR035268|interpro:IPR036390|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|rcsb pdb:3J47|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|rcsb pdb:3JCK|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|dip:DIP-2880N|mint:Q06103	psi-mi:"MI:0469"(intact)	crc64:E5DC7F8E6AE27736	crc64:B21B66CD818E636D	comment:PGK1 was also observed but regarded as a contaminant by the authors.|figure legend:Fig. 3D and Supp. Fig. 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	rogid:RVj0KoFtiJVk9oF3cYIftSVLejc559292	intact-crc:24BE10D68BC94BEF|rigid:8m+CzfhktiIO3YCVy7Ctqvlx5eY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P53549	uniprotkb:P33297	intact:EBI-18520|uniprotkb:Q08718|uniprotkb:D6W2W0|ensemblfungi:YOR259C	intact:EBI-13920|uniprotkb:D6W2H6|ensemblfungi:YOR117W	psi-mi:prs10_yeast(display_long)|uniprotkb:RPT4(gene name)|psi-mi:RPT4(display_short)|uniprotkb:CRL13(gene name synonym)|uniprotkb:PCS1(gene name synonym)|uniprotkb:SUG2(gene name synonym)|uniprotkb:26S protease subunit SUG2(gene name synonym)|uniprotkb:Proteasomal cap subunit(gene name synonym)|uniprotkb:YOR259C(locus name)	psi-mi:prs6a_yeast(display_long)|uniprotkb:RPT5(gene name)|psi-mi:RPT5(display_short)|uniprotkb:YTA1(gene name synonym)|uniprotkb:YOR117W(locus name)|uniprotkb:O3258(orf name)|uniprotkb:YOR3258W(orf name)|uniprotkb:Tat-binding protein homolog 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359727|imex:IM-12191-6	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005785|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:5MPB|ensemblfungi:YOR259C(gene)|ensemblfungi:YOR259C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|refseq:NP_014902.3|dip:DIP-1589N|mint:P53549	sgd:S000005643|rcsb pdb:3WHL|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|rcsb pdb:3WHK|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|ensemblfungi:YOR117W(gene)|ensemblfungi:YOR117W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035254|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|refseq:NP_014760.3|mint:P33297|dip:DIP-1590N	psi-mi:"MI:0469"(intact)	crc64:0EA42A599E2B2E2A	crc64:C215422033FCE830	comment:the Rpt4-containing complex had Rpt5 as its only other detectable constituent|figure legend:Fig. 4A|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:ZWrHVXeF+u+1NSq2hgELa61z4UE559292	rogid:jsQE3SjBA0ZZcysuLgFe/5M6pOc559292	intact-crc:28BF4FE2D3718EBC|rigid:jzobsaB/fyUuayz6QIPIWtAeeYI	false	flag tag:?-?|mutation:106-106	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P33299	uniprotkb:P40327	intact:EBI-13910|uniprotkb:D6VX51|ensemblfungi:YKL145W	intact:EBI-13901|uniprotkb:D6VRY1|ensemblfungi:YDL007W	psi-mi:prs7_yeast(display_long)|uniprotkb:YKL145W(locus name)|uniprotkb:RPT1(gene name)|psi-mi:RPT1(display_short)|uniprotkb:CIM5(gene name synonym)|uniprotkb:YTA3(gene name synonym)|uniprotkb:Protein CIM5(gene name synonym)|uniprotkb:Tat-binding homolog 3(gene name synonym)	psi-mi:prs4_yeast(display_long)|uniprotkb:RPT2(gene name)|psi-mi:RPT2(display_short)|uniprotkb:YHS4(gene name synonym)|uniprotkb:YTA5(gene name synonym)|uniprotkb:YDL007W(locus name)|uniprotkb:D2920(orf name)|uniprotkb:Tat-binding homolog 5(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359939|imex:IM-12191-2	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_012777.1|sgd:S000001628|ensemblfungi:YKL145W(gene)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|ensemblfungi:YKL145W_mRNA(transcript)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|go:"GO:0005524"(ATP binding)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR035245|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|go:"GO:0005634"(nucleus)|rcsb pdb:3VLF|rcsb pdb:4A3V|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4JPO|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|rcsb pdb:5A5B|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0031625"(ubiquitin protein ligase binding)|rcsb pdb:5MP9|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045732"(positive regulation of protein catabolic process)|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|rcsb pdb:6EF3|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P33299|dip:DIP-2883N	refseq:NP_010277.1|sgd:S000002165|ensemblfungi:YDL007W(gene)|ensemblfungi:YDL007W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0034629"|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0043171"(peptide catabolic process)|go:"GO:0045732"(positive regulation of protein catabolic process)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:4CR2|rcsb pdb:3JCP|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-532668|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P40327|dip:DIP-6282N	psi-mi:"MI:0469"(intact)	crc64:8454BBC9D549EC5C	crc64:EB735354C3A0EBD4	figure legend:Fig. 5A, Supp. Table 3|comment:cdc48 was also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:8XXo53yZ1KevHObtYWABeFr0hWo559292	rogid:nSy31Q+snoZMZrFmXscv8/HQYk0559292	intact-crc:C7E70EBCB523C7DB|rigid:+QzONUXG/G86NptR/yDcVrvVHKs	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P33299	uniprotkb:P38764	intact:EBI-13910|uniprotkb:D6VX51|ensemblfungi:YKL145W	intact:EBI-15913|uniprotkb:D3DKX4|ensemblfungi:YHR027C	psi-mi:prs7_yeast(display_long)|uniprotkb:YKL145W(locus name)|uniprotkb:RPT1(gene name)|psi-mi:RPT1(display_short)|uniprotkb:CIM5(gene name synonym)|uniprotkb:YTA3(gene name synonym)|uniprotkb:Protein CIM5(gene name synonym)|uniprotkb:Tat-binding homolog 3(gene name synonym)	psi-mi:rpn1_yeast(display_long)|uniprotkb:RPN1(gene name)|psi-mi:RPN1(display_short)|uniprotkb:HRD2(gene name synonym)|uniprotkb:NAS1(gene name synonym)|uniprotkb:RPD1(gene name synonym)|uniprotkb:Proteasome non-ATPase subunit 1(gene name synonym)|uniprotkb:HMG-CoA reductase degradation protein 2(gene name synonym)|uniprotkb:YHR027C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359939|imex:IM-12191-2	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_012777.1|sgd:S000001628|ensemblfungi:YKL145W(gene)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|ensemblfungi:YKL145W_mRNA(transcript)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|go:"GO:0005524"(ATP binding)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR035245|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|go:"GO:0005634"(nucleus)|rcsb pdb:3VLF|rcsb pdb:4A3V|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4JPO|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|rcsb pdb:5A5B|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0031625"(ubiquitin protein ligase binding)|rcsb pdb:5MP9|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045732"(positive regulation of protein catabolic process)|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|rcsb pdb:6EF3|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P33299|dip:DIP-2883N	refseq:NP_011892.1|sgd:S000001069|ensemblfungi:YHR027C(gene)|ensemblfungi:YHR027C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0042176"(regulation of protein catabolic process)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR002015(Proteasome/cyclosome, regulatory subunit)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR016643(26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)|interpro:IPR040892|interpro:IPR041433|rcsb pdb:2N3T|rcsb pdb:2N3U|rcsb pdb:2N3V|rcsb pdb:2N3W|rcsb pdb:2NBW|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|rcsb pdb:6FVU|reactome:R-SCE-983168|rcsb pdb:6FVV|rcsb pdb:6FVW|dip:DIP-2876N|mint:P38764	psi-mi:"MI:0469"(intact)	crc64:8454BBC9D549EC5C	crc64:B77954F4A998BA7C	figure legend:Fig. 5A, Supp. Table 3|comment:cdc48 was also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:8XXo53yZ1KevHObtYWABeFr0hWo559292	rogid:KZvwC6NNLC/jEW8wXPq2z+EFukY559292	intact-crc:C7E70EBCB523C7DB|rigid:+QzONUXG/G86NptR/yDcVrvVHKs	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P33299	uniprotkb:P40327	intact:EBI-13910|uniprotkb:D6VX51|ensemblfungi:YKL145W	intact:EBI-13901|uniprotkb:D6VRY1|ensemblfungi:YDL007W	psi-mi:prs7_yeast(display_long)|uniprotkb:YKL145W(locus name)|uniprotkb:RPT1(gene name)|psi-mi:RPT1(display_short)|uniprotkb:CIM5(gene name synonym)|uniprotkb:YTA3(gene name synonym)|uniprotkb:Protein CIM5(gene name synonym)|uniprotkb:Tat-binding homolog 3(gene name synonym)	psi-mi:prs4_yeast(display_long)|uniprotkb:RPT2(gene name)|psi-mi:RPT2(display_short)|uniprotkb:YHS4(gene name synonym)|uniprotkb:YTA5(gene name synonym)|uniprotkb:YDL007W(locus name)|uniprotkb:D2920(orf name)|uniprotkb:Tat-binding homolog 5(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359947|imex:IM-12191-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_012777.1|sgd:S000001628|ensemblfungi:YKL145W(gene)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|ensemblfungi:YKL145W_mRNA(transcript)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|go:"GO:0005524"(ATP binding)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR035245|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|go:"GO:0005634"(nucleus)|rcsb pdb:3VLF|rcsb pdb:4A3V|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4JPO|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|rcsb pdb:5A5B|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0031625"(ubiquitin protein ligase binding)|rcsb pdb:5MP9|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045732"(positive regulation of protein catabolic process)|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|rcsb pdb:6EF3|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P33299|dip:DIP-2883N	refseq:NP_010277.1|sgd:S000002165|ensemblfungi:YDL007W(gene)|ensemblfungi:YDL007W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0034629"|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0043171"(peptide catabolic process)|go:"GO:0045732"(positive regulation of protein catabolic process)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:4CR2|rcsb pdb:3JCP|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-532668|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P40327|dip:DIP-6282N	psi-mi:"MI:0469"(intact)	crc64:8454BBC9D549EC5C	crc64:EB735354C3A0EBD4	figure legend:Fig. 5A, 5B, Supp. Table 4|comment:SSB1/2 was also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:8XXo53yZ1KevHObtYWABeFr0hWo559292	rogid:nSy31Q+snoZMZrFmXscv8/HQYk0559292	intact-crc:8400A4228B390D2C|rigid:qVDFMXPmTiuHG5Y9R9Tx5InRoGY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P33299	uniprotkb:P38764	intact:EBI-13910|uniprotkb:D6VX51|ensemblfungi:YKL145W	intact:EBI-15913|uniprotkb:D3DKX4|ensemblfungi:YHR027C	psi-mi:prs7_yeast(display_long)|uniprotkb:YKL145W(locus name)|uniprotkb:RPT1(gene name)|psi-mi:RPT1(display_short)|uniprotkb:CIM5(gene name synonym)|uniprotkb:YTA3(gene name synonym)|uniprotkb:Protein CIM5(gene name synonym)|uniprotkb:Tat-binding homolog 3(gene name synonym)	psi-mi:rpn1_yeast(display_long)|uniprotkb:RPN1(gene name)|psi-mi:RPN1(display_short)|uniprotkb:HRD2(gene name synonym)|uniprotkb:NAS1(gene name synonym)|uniprotkb:RPD1(gene name synonym)|uniprotkb:Proteasome non-ATPase subunit 1(gene name synonym)|uniprotkb:HMG-CoA reductase degradation protein 2(gene name synonym)|uniprotkb:YHR027C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359947|imex:IM-12191-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_012777.1|sgd:S000001628|ensemblfungi:YKL145W(gene)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|ensemblfungi:YKL145W_mRNA(transcript)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|go:"GO:0005524"(ATP binding)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR035245|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|go:"GO:0005634"(nucleus)|rcsb pdb:3VLF|rcsb pdb:4A3V|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4JPO|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|rcsb pdb:5A5B|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0031625"(ubiquitin protein ligase binding)|rcsb pdb:5MP9|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045732"(positive regulation of protein catabolic process)|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|rcsb pdb:6EF3|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P33299|dip:DIP-2883N	refseq:NP_011892.1|sgd:S000001069|ensemblfungi:YHR027C(gene)|ensemblfungi:YHR027C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0042176"(regulation of protein catabolic process)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR002015(Proteasome/cyclosome, regulatory subunit)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR016643(26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)|interpro:IPR040892|interpro:IPR041433|rcsb pdb:2N3T|rcsb pdb:2N3U|rcsb pdb:2N3V|rcsb pdb:2N3W|rcsb pdb:2NBW|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|rcsb pdb:6FVU|reactome:R-SCE-983168|rcsb pdb:6FVV|rcsb pdb:6FVW|dip:DIP-2876N|mint:P38764	psi-mi:"MI:0469"(intact)	crc64:8454BBC9D549EC5C	crc64:B77954F4A998BA7C	figure legend:Fig. 5A, 5B, Supp. Table 4|comment:SSB1/2 was also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:8XXo53yZ1KevHObtYWABeFr0hWo559292	rogid:KZvwC6NNLC/jEW8wXPq2z+EFukY559292	intact-crc:8400A4228B390D2C|rigid:qVDFMXPmTiuHG5Y9R9Tx5InRoGY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P33299	uniprotkb:P38348	intact:EBI-13910|uniprotkb:D6VX51|ensemblfungi:YKL145W	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	psi-mi:prs7_yeast(display_long)|uniprotkb:YKL145W(locus name)|uniprotkb:RPT1(gene name)|psi-mi:RPT1(display_short)|uniprotkb:CIM5(gene name synonym)|uniprotkb:YTA3(gene name synonym)|uniprotkb:Protein CIM5(gene name synonym)|uniprotkb:Tat-binding homolog 3(gene name synonym)	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359947|imex:IM-12191-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_012777.1|sgd:S000001628|ensemblfungi:YKL145W(gene)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|ensemblfungi:YKL145W_mRNA(transcript)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|go:"GO:0005524"(ATP binding)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR035245|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|go:"GO:0005634"(nucleus)|rcsb pdb:3VLF|rcsb pdb:4A3V|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4JPO|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|rcsb pdb:5A5B|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0031625"(ubiquitin protein ligase binding)|rcsb pdb:5MP9|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045732"(positive regulation of protein catabolic process)|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|rcsb pdb:6EF3|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P33299|dip:DIP-2883N	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	psi-mi:"MI:0469"(intact)	crc64:8454BBC9D549EC5C	crc64:8B739BCC9A46A63E	figure legend:Fig. 5A, 5B, Supp. Table 4|comment:SSB1/2 was also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:8XXo53yZ1KevHObtYWABeFr0hWo559292	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	intact-crc:8400A4228B390D2C|rigid:qVDFMXPmTiuHG5Y9R9Tx5InRoGY	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P33298	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13905|ensemblfungi:YDR394W|uniprotkb:D6VT28	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs6b_yeast(display_long)|uniprotkb:RPT3(gene name)|psi-mi:RPT3(display_short)|uniprotkb:YNT1(gene name synonym)|uniprotkb:YTA2(gene name synonym)|uniprotkb:YDR394W(locus name)|uniprotkb:D9509.14(orf name)|uniprotkb:Protein YNT1(gene name synonym)|uniprotkb:Tat-binding homolog 2(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000002802|ensemblfungi:YDR394W(gene)|ensemblfungi:YDR394W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|refseq:NP_010682.3|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035256|rcsb pdb:2DZN|rcsb pdb:2DZO|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P33298|dip:DIP-1587N|interpro:IPR003960(AAA ATPase, conserved site)	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:E12F0995A60732BD	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:teaQwAlS0ruTNKbLkX7kP4lkn7o559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:O13563	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-32948|uniprotkb:D6VZ57|ensemblfungi:YLR421C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn13_yeast(display_long)|uniprotkb:RPN13(gene name)|psi-mi:RPN13(display_short)|uniprotkb:DAQ1(gene name synonym)|uniprotkb:Proteasome non-ATPase subunit 13(gene name synonym)|uniprotkb:YLR421C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000004413|refseq:NP_013525.3|mint:O13563|dip:DIP-4637N|ensemblfungi:YLR421C(gene)|ensemblfungi:YLR421C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061133"(endopeptidase activator activity)|go:"GO:0070628"(proteasome binding)|interpro:IPR006773(Adhesion regulating molecule)|interpro:IPR038633|interpro:IPR044868|rcsb pdb:2Z4D|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:752E8A12DC3799D4	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:UDb5Hp4hH3QQ5iX7/9BtQVBO0FA559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:Q08723	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-36176|uniprotkb:Q6Q5I7|uniprotkb:D6W2W2|ensemblfungi:YOR261C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn8_yeast(display_long)|uniprotkb:RPN8(gene name)|psi-mi:RPN8(display_short)|uniprotkb:O5360(orf name)|uniprotkb:YOR261C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000005787|refseq:NP_014904.3|mint:Q08723|dip:DIP-1574N|ensemblfungi:YOR261C(gene)|ensemblfungi:YOR261C_mRNA(transcript)|go:"GO:0000502"(proteasome complex)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008237"(metallopeptidase activity)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0070122"(isopeptidase activity)|interpro:IPR000555(Mov34/MPN/PAD-1)|interpro:IPR024969|interpro:IPR033858|interpro:IPR037518|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4O8X|rcsb pdb:4O8Y|rcsb pdb:4OCL|rcsb pdb:4OCM|rcsb pdb:4OCN|rcsb pdb:4OWP|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5U4P|rcsb pdb:5W83|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:6EE6009545A3D0EF	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:kvJ/LyyQGKi5JTh4Fek1kh70jOU559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:Q01939	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13914|ensemblfungi:YGL048C|uniprotkb:D6VU92	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs8_yeast(display_long)|uniprotkb:TBPY(gene name synonym)|uniprotkb:TBY1(gene name synonym)|uniprotkb:YGL048C(locus name)|uniprotkb:RPT6(gene name)|psi-mi:RPT6(display_short)|uniprotkb:CIM3(gene name synonym)|uniprotkb:CRL3(gene name synonym)|uniprotkb:SUG1(gene name synonym)|uniprotkb:Protein SUG1(gene name synonym)|uniprotkb:Protein CIM3(gene name synonym)|uniprotkb:Tat-binding protein TBY1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	go:"GO:0051091"(positive regulation of DNA-binding transcription factor activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035261|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8948751|reactome:R-SCE-983168|reactome:R-SCE-8854050|ensemblfungi:YGL048C(gene)|ensemblfungi:YGL048C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006338"(chromatin remodeling)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043433"(negative regulation of DNA-binding transcription factor activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|refseq:NP_011467.1|sgd:S000003016|mint:Q01939|dip:DIP-979N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:9C59E92A0794F60F	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:lvkwNLqTeoit17Ax4mP0+WiGzsY559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P32496	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15953|uniprotkb:D6VTT5|ensemblfungi:YFR052W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn12_yeast(display_long)|uniprotkb:RPN12(gene name)|psi-mi:RPN12(display_short)|uniprotkb:NIN1(gene name synonym)|uniprotkb:Nuclear integrity protein 1(gene name synonym)|uniprotkb:YFR052W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_116710.1|sgd:S000001948|ensemblfungi:YFR052W(gene)|ensemblfungi:YFR052W_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR006746(26S proteasome non-ATPase regulatory subunit Rpn12)|interpro:IPR033464|rcsb pdb:3J47|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:3JCK|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:3JCO|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|rcsb pdb:3JCP|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:4CR2|dip:DIP-1575N|mint:P32496	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:D901AAD4D07ED3D1	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:CfJpK67fHH3iGDxduaRg+z2hokY559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:Q12377	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-308|uniprotkb:D6VRQ3|ensemblfungi:YDL097C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn6_yeast(display_long)|uniprotkb:RPN6(gene name)|psi-mi:RPN6(display_short)|uniprotkb:NAS4(gene name synonym)|uniprotkb:YDL097C(locus name)|uniprotkb:D2381(orf name)|uniprotkb:Proteasome non-ATPase subunit 4(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_010186.1|sgd:S000002255|dip:DIP-1581N|mint:Q12377|ensemblfungi:YDL097C(gene)|ensemblfungi:YDL097C_mRNA(transcript)|go:"GO:0005198"(structural molecule activity)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043248"(proteasome assembly)|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR036390|interpro:IPR040773|interpro:IPR040780|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:A8B1F7E6F73A4024	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:Q7d0N0C4nR9dUZHh+zofzWAF/t8559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:Q12250	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15935|uniprotkb:D6VRK1|ensemblfungi:YDL147W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn5_yeast(display_long)|uniprotkb:RPN5(gene name)|psi-mi:RPN5(display_short)|uniprotkb:NAS5(gene name synonym)|uniprotkb:YDL147W(locus name)|uniprotkb:D1572(orf name)|uniprotkb:Proteasome non-ATPase subunit 5(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_010134.1|sgd:S000002306|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035297|interpro:IPR036388|interpro:IPR036390|interpro:IPR040134|interpro:IPR040896|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:5ZMR|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|rcsb pdb:6FVX|ensemblfungi:YDL147W(gene)|ensemblfungi:YDL147W_mRNA(transcript)|go:"GO:0000338"(protein deneddylation)|go:"GO:0000502"(proteasome complex)|go:"GO:0005737"(cytoplasm)|go:"GO:0008180"(COP9 signalosome)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0034515"(proteasome storage granule)|rcsb pdb:6J2C|rcsb pdb:6FVY|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1578N|mint:Q12250	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:E5DC7F8E6AE27736	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:DaeRxapE6TgoZG4emWRb3y12Vfc559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P43588	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-11219|uniprotkb:Q8J0T5|uniprotkb:D6VTN4|ensemblfungi:YFR004W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn11_yeast(display_long)|uniprotkb:YFR004W(locus name)|uniprotkb:RPN11(gene name)|psi-mi:RPN11(display_short)|uniprotkb:MPR1(gene name synonym)|uniprotkb:Protein MPR1(gene name synonym)|uniprotkb:26S proteasome regulatory subunit RPN11(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	ensemblfungi:YFR004W(gene)|ensemblfungi:YFR004W_mRNA(transcript)|go:"GO:0000266"(mitochondrial fission)|go:"GO:0004843"(thiol-dependent deubiquitinase)|go:"GO:0005634"(nucleus)|go:"GO:0005739"(mitochondrion)|go:"GO:0005829"(cytosol)|go:"GO:0008237"(metallopeptidase activity)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0016559"(peroxisome fission)|go:"GO:0016579"(protein deubiquitination)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043248"(proteasome assembly)|go:"GO:0046872"(metal ion binding)|go:"GO:0061578"(Lys63-specific deubiquitinase activity)|go:"GO:0070628"(proteasome binding)|go:"GO:1902906"(proteasome storage granule assembly)|interpro:IPR000555(Mov34/MPN/PAD-1)|interpro:IPR024969|interpro:IPR035299|interpro:IPR037518|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4O8X|rcsb pdb:4O8Y|rcsb pdb:4OCL|rcsb pdb:4OCM|go:"GO:0070122"(isopeptidase activity)|rcsb pdb:4OCN|rcsb pdb:4OWP|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5U4P|rcsb pdb:5W83|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-5689901|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|refseq:NP_116659.1|sgd:S000001900|mint:P43588|dip:DIP-1573N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:9DDE8BD74890894D	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:f3lAMY9siMcO2dAOfKvVrvKzfNM559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P40016	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15927|uniprotkb:D3DLS0|ensemblfungi:YER021W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn3_yeast(display_long)|uniprotkb:RPN3(gene name)|psi-mi:RPN3(display_short)|uniprotkb:SUN2(gene name synonym)|uniprotkb:YER021W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_010938.1|sgd:S000000823|ensemblfungi:YER021W(gene)|ensemblfungi:YER021W_mRNA(transcript)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0042176"(regulation of protein catabolic process)|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR013586(26S proteasome regulatory subunit, C-terminal)|interpro:IPR035267|interpro:IPR036390|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-1322N|mint:P40016	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:B08B58663DDA85DC	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:pXkyoZKr0rI5usi19R+TvS4hSso559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P32565	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15919|uniprotkb:D6VVK9|ensemblfungi:YIL075C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn2_yeast(display_long)|uniprotkb:RPN2(gene name)|psi-mi:RPN2(display_short)|uniprotkb:SEN3(gene name synonym)|uniprotkb:YIL075C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_012190.1|sgd:S000001337|ensemblfungi:YIL075C(gene)|ensemblfungi:YIL075C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0042176"(regulation of protein catabolic process)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043248"(proteasome assembly)|interpro:IPR002015(Proteasome/cyclosome, regulatory subunit)|interpro:IPR011989(Armadillo-like helical)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR016642(26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit)|interpro:IPR035266|interpro:IPR040623|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4ADY|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-4638N|mint:P32565	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:881E78EBC6BD934F	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:XKuDty+1gX7/pz7ZtNmYK4Pfkc8559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:Q06103	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15940|uniprotkb:D6W4A6|uniprotkb:E9P8W9|ensemblfungi:YPR108W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn7_yeast(display_long)|uniprotkb:RPN7(gene name)|psi-mi:RPN7(display_short)|uniprotkb:P8283.8(orf name)|uniprotkb:YPR108W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_015433.1|sgd:S000006312|ensemblfungi:YPR108W(gene)|ensemblfungi:YPR108W_mRNA(transcript)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005634"(nucleus)|go:"GO:0005838"(proteasome regulatory particle)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019585|interpro:IPR019734|interpro:IPR035268|interpro:IPR036390|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|rcsb pdb:3J47|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|rcsb pdb:3JCK|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|dip:DIP-2880N|mint:Q06103	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:B21B66CD818E636D	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:RVj0KoFtiJVk9oF3cYIftSVLejc559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P53549	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-18520|uniprotkb:Q08718|uniprotkb:D6W2W0|ensemblfungi:YOR259C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs10_yeast(display_long)|uniprotkb:RPT4(gene name)|psi-mi:RPT4(display_short)|uniprotkb:CRL13(gene name synonym)|uniprotkb:PCS1(gene name synonym)|uniprotkb:SUG2(gene name synonym)|uniprotkb:26S protease subunit SUG2(gene name synonym)|uniprotkb:Proteasomal cap subunit(gene name synonym)|uniprotkb:YOR259C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000005785|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:5MPB|ensemblfungi:YOR259C(gene)|ensemblfungi:YOR259C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|refseq:NP_014902.3|dip:DIP-1589N|mint:P53549	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:0EA42A599E2B2E2A	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:ZWrHVXeF+u+1NSq2hgELa61z4UE559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P33297	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13920|uniprotkb:D6W2H6|ensemblfungi:YOR117W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs6a_yeast(display_long)|uniprotkb:RPT5(gene name)|psi-mi:RPT5(display_short)|uniprotkb:YTA1(gene name synonym)|uniprotkb:YOR117W(locus name)|uniprotkb:O3258(orf name)|uniprotkb:YOR3258W(orf name)|uniprotkb:Tat-binding protein homolog 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000005643|rcsb pdb:3WHL|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|rcsb pdb:3WHK|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|ensemblfungi:YOR117W(gene)|ensemblfungi:YOR117W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035254|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|refseq:NP_014760.3|mint:P33297|dip:DIP-1590N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:C215422033FCE830	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:jsQE3SjBA0ZZcysuLgFe/5M6pOc559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P38886	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15949|ensemblfungi:YHR200W|uniprotkb:D3DLE9	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn10_yeast(display_long)|uniprotkb:RPN10(gene name)|psi-mi:RPN10(display_short)|uniprotkb:MCB1(gene name synonym)|uniprotkb:SUN1(gene name synonym)|uniprotkb:YHR200W(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	ensemblfungi:YHR200W(gene)|ensemblfungi:YHR200W_mRNA(transcript)|go:"GO:0000502"(proteasome complex)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|sgd:S000001243|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0031593"(polyubiquitin modification-dependent protein binding)|go:"GO:0036435"(K48-linked polyubiquitin modification-dependent protein binding)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043248"(proteasome assembly)|interpro:IPR002035(von Willebrand factor, type A)|interpro:IPR003903(Ubiquitin interacting motif)|interpro:IPR027040|interpro:IPR036465|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5LN1|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|refseq:NP_012070.3|dip:DIP-2100N|mint:P38886	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:8A05198B0CD7C0C3	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:Lg2bjPWMUcvXdLDZZMWFWyXbCcA559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:Q04062	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15944|uniprotkb:D6VT56|ensemblfungi:YDR427W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn9_yeast(display_long)|uniprotkb:RPN9(gene name)|psi-mi:RPN9(display_short)|uniprotkb:NAS7(gene name synonym)|uniprotkb:YDR427W(locus name)|uniprotkb:D9461.14(orf name)|uniprotkb:Proteasome non-ATPase subunit 7(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000002835|ensemblfungi:YDR427W(gene)|ensemblfungi:YDR427W_mRNA(transcript)|go:"GO:0005198"(structural molecule activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043248"(proteasome assembly)|interpro:IPR000717(Proteasome component region PCI)|interpro:IPR035298|interpro:IPR036390|interpro:IPR040798|rcsb pdb:2MQW|rcsb pdb:2MR3|rcsb pdb:2MRI|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|refseq:NP_010715.3|dip:DIP-5261N|mint:Q04062	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:540F7DF8C23469A1	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:hOAU0IY1VeRlmtX4Dw3MNJybZaE559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P33299	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13910|uniprotkb:D6VX51|ensemblfungi:YKL145W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs7_yeast(display_long)|uniprotkb:YKL145W(locus name)|uniprotkb:RPT1(gene name)|psi-mi:RPT1(display_short)|uniprotkb:CIM5(gene name synonym)|uniprotkb:YTA3(gene name synonym)|uniprotkb:Protein CIM5(gene name synonym)|uniprotkb:Tat-binding homolog 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_012777.1|sgd:S000001628|ensemblfungi:YKL145W(gene)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|ensemblfungi:YKL145W_mRNA(transcript)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|go:"GO:0005524"(ATP binding)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR035245|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|go:"GO:0005634"(nucleus)|rcsb pdb:3VLF|rcsb pdb:4A3V|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4JPO|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|rcsb pdb:5A5B|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0031625"(ubiquitin protein ligase binding)|rcsb pdb:5MP9|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045732"(positive regulation of protein catabolic process)|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|rcsb pdb:6EF3|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P33299|dip:DIP-2883N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:8454BBC9D549EC5C	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:8XXo53yZ1KevHObtYWABeFr0hWo559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P40327	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13901|uniprotkb:D6VRY1|ensemblfungi:YDL007W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs4_yeast(display_long)|uniprotkb:RPT2(gene name)|psi-mi:RPT2(display_short)|uniprotkb:YHS4(gene name synonym)|uniprotkb:YTA5(gene name synonym)|uniprotkb:YDL007W(locus name)|uniprotkb:D2920(orf name)|uniprotkb:Tat-binding homolog 5(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_010277.1|sgd:S000002165|ensemblfungi:YDL007W(gene)|ensemblfungi:YDL007W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0034629"|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0043171"(peptide catabolic process)|go:"GO:0045732"(positive regulation of protein catabolic process)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:4CR2|rcsb pdb:3JCP|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-532668|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P40327|dip:DIP-6282N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:EB735354C3A0EBD4	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:nSy31Q+snoZMZrFmXscv8/HQYk0559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P38764	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15913|uniprotkb:D3DKX4|ensemblfungi:YHR027C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn1_yeast(display_long)|uniprotkb:RPN1(gene name)|psi-mi:RPN1(display_short)|uniprotkb:HRD2(gene name synonym)|uniprotkb:NAS1(gene name synonym)|uniprotkb:RPD1(gene name synonym)|uniprotkb:Proteasome non-ATPase subunit 1(gene name synonym)|uniprotkb:HMG-CoA reductase degradation protein 2(gene name synonym)|uniprotkb:YHR027C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359957|imex:IM-12191-5	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_011892.1|sgd:S000001069|ensemblfungi:YHR027C(gene)|ensemblfungi:YHR027C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0042176"(regulation of protein catabolic process)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR002015(Proteasome/cyclosome, regulatory subunit)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR016643(26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)|interpro:IPR040892|interpro:IPR041433|rcsb pdb:2N3T|rcsb pdb:2N3U|rcsb pdb:2N3V|rcsb pdb:2N3W|rcsb pdb:2NBW|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|rcsb pdb:6FVU|reactome:R-SCE-983168|rcsb pdb:6FVV|rcsb pdb:6FVW|dip:DIP-2876N|mint:P38764	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:B77954F4A998BA7C	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:KZvwC6NNLC/jEW8wXPq2z+EFukY559292	intact-crc:2119215165617DE8|rigid:z8BwRH3p6iOrmlGfVS3jLLHoV3M	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P32565	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15919|uniprotkb:D6VVK9|ensemblfungi:YIL075C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn2_yeast(display_long)|uniprotkb:RPN2(gene name)|psi-mi:RPN2(display_short)|uniprotkb:SEN3(gene name synonym)|uniprotkb:YIL075C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_012190.1|sgd:S000001337|ensemblfungi:YIL075C(gene)|ensemblfungi:YIL075C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0042176"(regulation of protein catabolic process)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043248"(proteasome assembly)|interpro:IPR002015(Proteasome/cyclosome, regulatory subunit)|interpro:IPR011989(Armadillo-like helical)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR016642(26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit)|interpro:IPR035266|interpro:IPR040623|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4ADY|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|dip:DIP-4638N|mint:P32565	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:881E78EBC6BD934F	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:XKuDty+1gX7/pz7ZtNmYK4Pfkc8559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P40327	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13901|uniprotkb:D6VRY1|ensemblfungi:YDL007W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs4_yeast(display_long)|uniprotkb:RPT2(gene name)|psi-mi:RPT2(display_short)|uniprotkb:YHS4(gene name synonym)|uniprotkb:YTA5(gene name synonym)|uniprotkb:YDL007W(locus name)|uniprotkb:D2920(orf name)|uniprotkb:Tat-binding homolog 5(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_010277.1|sgd:S000002165|ensemblfungi:YDL007W(gene)|ensemblfungi:YDL007W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0034629"|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0043171"(peptide catabolic process)|go:"GO:0045732"(positive regulation of protein catabolic process)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:4CR2|rcsb pdb:3JCP|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-532668|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P40327|dip:DIP-6282N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:EB735354C3A0EBD4	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:nSy31Q+snoZMZrFmXscv8/HQYk0559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:Q01939	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13914|ensemblfungi:YGL048C|uniprotkb:D6VU92	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs8_yeast(display_long)|uniprotkb:TBPY(gene name synonym)|uniprotkb:TBY1(gene name synonym)|uniprotkb:YGL048C(locus name)|uniprotkb:RPT6(gene name)|psi-mi:RPT6(display_short)|uniprotkb:CIM3(gene name synonym)|uniprotkb:CRL3(gene name synonym)|uniprotkb:SUG1(gene name synonym)|uniprotkb:Protein SUG1(gene name synonym)|uniprotkb:Protein CIM3(gene name synonym)|uniprotkb:Tat-binding protein TBY1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	go:"GO:0051091"(positive regulation of DNA-binding transcription factor activity)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035261|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8948751|reactome:R-SCE-983168|reactome:R-SCE-8854050|ensemblfungi:YGL048C(gene)|ensemblfungi:YGL048C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0006338"(chromatin remodeling)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0031595"(nuclear proteasome complex)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043433"(negative regulation of DNA-binding transcription factor activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|refseq:NP_011467.1|sgd:S000003016|mint:Q01939|dip:DIP-979N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:9C59E92A0794F60F	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:lvkwNLqTeoit17Ax4mP0+WiGzsY559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P33298	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13905|ensemblfungi:YDR394W|uniprotkb:D6VT28	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs6b_yeast(display_long)|uniprotkb:RPT3(gene name)|psi-mi:RPT3(display_short)|uniprotkb:YNT1(gene name synonym)|uniprotkb:YTA2(gene name synonym)|uniprotkb:YDR394W(locus name)|uniprotkb:D9509.14(orf name)|uniprotkb:Protein YNT1(gene name synonym)|uniprotkb:Tat-binding homolog 2(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000002802|ensemblfungi:YDR394W(gene)|ensemblfungi:YDR394W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|refseq:NP_010682.3|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035256|rcsb pdb:2DZN|rcsb pdb:2DZO|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P33298|dip:DIP-1587N|interpro:IPR003960(AAA ATPase, conserved site)	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:E12F0995A60732BD	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:teaQwAlS0ruTNKbLkX7kP4lkn7o559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P33297	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13920|uniprotkb:D6W2H6|ensemblfungi:YOR117W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs6a_yeast(display_long)|uniprotkb:RPT5(gene name)|psi-mi:RPT5(display_short)|uniprotkb:YTA1(gene name synonym)|uniprotkb:YOR117W(locus name)|uniprotkb:O3258(orf name)|uniprotkb:YOR3258W(orf name)|uniprotkb:Tat-binding protein homolog 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000005643|rcsb pdb:3WHL|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|rcsb pdb:3WHK|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|ensemblfungi:YOR117W(gene)|ensemblfungi:YOR117W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035254|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|refseq:NP_014760.3|mint:P33297|dip:DIP-1590N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:C215422033FCE830	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:jsQE3SjBA0ZZcysuLgFe/5M6pOc559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P33299	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13910|uniprotkb:D6VX51|ensemblfungi:YKL145W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs7_yeast(display_long)|uniprotkb:YKL145W(locus name)|uniprotkb:RPT1(gene name)|psi-mi:RPT1(display_short)|uniprotkb:CIM5(gene name synonym)|uniprotkb:YTA3(gene name synonym)|uniprotkb:Protein CIM5(gene name synonym)|uniprotkb:Tat-binding homolog 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_012777.1|sgd:S000001628|ensemblfungi:YKL145W(gene)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|ensemblfungi:YKL145W_mRNA(transcript)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|go:"GO:0005524"(ATP binding)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR035245|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|go:"GO:0005634"(nucleus)|rcsb pdb:3VLF|rcsb pdb:4A3V|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4JPO|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|rcsb pdb:5A5B|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0017025"(TBP-class protein binding)|go:"GO:0031625"(ubiquitin protein ligase binding)|rcsb pdb:5MP9|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045732"(positive regulation of protein catabolic process)|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|rcsb pdb:6EF3|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|mint:P33299|dip:DIP-2883N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:8454BBC9D549EC5C	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:8XXo53yZ1KevHObtYWABeFr0hWo559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:O13563	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-32948|uniprotkb:D6VZ57|ensemblfungi:YLR421C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn13_yeast(display_long)|uniprotkb:RPN13(gene name)|psi-mi:RPN13(display_short)|uniprotkb:DAQ1(gene name synonym)|uniprotkb:Proteasome non-ATPase subunit 13(gene name synonym)|uniprotkb:YLR421C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000004413|refseq:NP_013525.3|mint:O13563|dip:DIP-4637N|ensemblfungi:YLR421C(gene)|ensemblfungi:YLR421C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043130"(ubiquitin binding)|go:"GO:0061133"(endopeptidase activator activity)|go:"GO:0070628"(proteasome binding)|interpro:IPR006773(Adhesion regulating molecule)|interpro:IPR038633|interpro:IPR044868|rcsb pdb:2Z4D|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:752E8A12DC3799D4	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:UDb5Hp4hH3QQ5iX7/9BtQVBO0FA559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P53549	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-18520|uniprotkb:Q08718|uniprotkb:D6W2W0|ensemblfungi:YOR259C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs10_yeast(display_long)|uniprotkb:RPT4(gene name)|psi-mi:RPT4(display_short)|uniprotkb:CRL13(gene name synonym)|uniprotkb:PCS1(gene name synonym)|uniprotkb:SUG2(gene name synonym)|uniprotkb:26S protease subunit SUG2(gene name synonym)|uniprotkb:Proteasomal cap subunit(gene name synonym)|uniprotkb:YOR259C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000005785|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:5MPB|ensemblfungi:YOR259C(gene)|ensemblfungi:YOR259C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|refseq:NP_014902.3|dip:DIP-1589N|mint:P53549	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:0EA42A599E2B2E2A	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:ZWrHVXeF+u+1NSq2hgELa61z4UE559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P38764	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-15913|uniprotkb:D3DKX4|ensemblfungi:YHR027C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn1_yeast(display_long)|uniprotkb:RPN1(gene name)|psi-mi:RPN1(display_short)|uniprotkb:HRD2(gene name synonym)|uniprotkb:NAS1(gene name synonym)|uniprotkb:RPD1(gene name synonym)|uniprotkb:Proteasome non-ATPase subunit 1(gene name synonym)|uniprotkb:HMG-CoA reductase degradation protein 2(gene name synonym)|uniprotkb:YHR027C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_011892.1|sgd:S000001069|ensemblfungi:YHR027C(gene)|ensemblfungi:YHR027C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0042176"(regulation of protein catabolic process)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|interpro:IPR002015(Proteasome/cyclosome, regulatory subunit)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR016643(26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)|interpro:IPR040892|interpro:IPR041433|rcsb pdb:2N3T|rcsb pdb:2N3U|rcsb pdb:2N3V|rcsb pdb:2N3W|rcsb pdb:2NBW|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|rcsb pdb:6FVU|reactome:R-SCE-983168|rcsb pdb:6FVV|rcsb pdb:6FVW|dip:DIP-2876N|mint:P38764	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:B77954F4A998BA7C	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:KZvwC6NNLC/jEW8wXPq2z+EFukY559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P53196	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-23691|uniprotkb:D6VUD4|ensemblfungi:YGL004C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn14_yeast(display_long)|uniprotkb:YGL004C(locus name)|uniprotkb:RPN14(gene name)|psi-mi:RPN14(display_short)|uniprotkb:Proteasome non-ATPase subunit 14(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_011511.3|sgd:S000002972|dip:DIP-6617N|mint:P53196|ensemblfungi:YGL004C(gene)|ensemblfungi:YGL004C_mRNA(transcript)|go:"GO:0000502"(proteasome complex)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR001680(WD40 repeat)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR036322|rcsb pdb:3ACP|rcsb pdb:3VL1	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:025CAB9A872E1AB8	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:kw/bMqSD6+pYWDNLN+8hFRV53ZE559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P38348	uniprotkb:P50086	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-14028|ensemblfungi:YGR232W|uniprotkb:D6VV12	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:psd10_yeast(display_long)|uniprotkb:NAS6(gene name)|psi-mi:NAS6(display_short)|uniprotkb:YGR232W(locus name)|uniprotkb:G8564(orf name)|uniprotkb:Proteasome non-ATPase subunit 6(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2359985|imex:IM-12191-4	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	ensemblfungi:YGR232W(gene)|ensemblfungi:YGR232W_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0070682"(proteasome regulatory particle assembly)|go:"GO:1904855"(proteasome regulatory particle binding)|interpro:IPR002110(Ankyrin)|interpro:IPR020683|interpro:IPR036770|rcsb pdb:1IXV|rcsb pdb:1WG0|rcsb pdb:2DZN|rcsb pdb:2DZO|reactome:R-SCE-8948751|sgd:S000003464|refseq:NP_011748.3|mint:P50086|dip:DIP-1591N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:6B30C0DD034A6289	figure legend:Fig. 5F,  Supp. Table 5|comment:ADH1, RPD2, RPS5, RPS19B, CTR9, UBI1/2/3/4, PDC1, RPS3,  were also identified but assumed to be a contaminant by the authors.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:NaPb5AaHRJ7n1VSLw53EIq4YxuY559292	intact-crc:1AE4E39ACBBEBC21|rigid:Vt59UuyLAtDPLt3mVePCrCc0KI0	false	flag tag:?-?	-	-	-	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)	psi-mi:"MI:0032"(de novo protein sequencing by mass spectrometry)
uniprotkb:P40555	uniprotkb:P53549	intact:EBI-14024|ensemblfungi:YIL007C|uniprotkb:D6VVS3	intact:EBI-18520|uniprotkb:Q08718|uniprotkb:D6W2W0|ensemblfungi:YOR259C	psi-mi:psmd9_yeast(display_long)|uniprotkb:NAS2(gene name)|psi-mi:NAS2(display_short)|uniprotkb:YIL007C(locus name)|uniprotkb:Proteasome non-ATPase subunit 2(gene name synonym)	psi-mi:prs10_yeast(display_long)|uniprotkb:RPT4(gene name)|psi-mi:RPT4(display_short)|uniprotkb:CRL13(gene name synonym)|uniprotkb:PCS1(gene name synonym)|uniprotkb:SUG2(gene name synonym)|uniprotkb:26S protease subunit SUG2(gene name synonym)|uniprotkb:Proteasomal cap subunit(gene name synonym)|uniprotkb:YOR259C(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360297|imex:IM-12191-11	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000001269|ensemblfungi:YIL007C(gene)|ensemblfungi:YIL007C_mRNA(transcript)|rcsb pdb:3WHL|rcsb pdb:4O06|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR035269|interpro:IPR036034|interpro:IPR040815|rcsb pdb:3WHJ|refseq:NP_012259.3|mint:P40555|dip:DIP-1893N	sgd:S000005785|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:5MPB|ensemblfungi:YOR259C(gene)|ensemblfungi:YOR259C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|refseq:NP_014902.3|dip:DIP-1589N|mint:P53549	psi-mi:"MI:0469"(intact)	crc64:1BA966C5B7B2D02B	crc64:0EA42A599E2B2E2A	comment:Coprecipitation of endogenous Rpt4 and Rpt5 with chromosomally expressed Nas2-Flag.|figure legend:Fig. 4A|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:BCmwaybo0JCsPQNzGbZzybhsDr0559292	rogid:ZWrHVXeF+u+1NSq2hgELa61z4UE559292	intact-crc:882FE7C0088A7D52|rigid:IJ7bKHEE0QxGv4p4Ytahss2dyXA	false	flag tag:?-?	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P40555	uniprotkb:P33297	intact:EBI-14024|ensemblfungi:YIL007C|uniprotkb:D6VVS3	intact:EBI-13920|uniprotkb:D6W2H6|ensemblfungi:YOR117W	psi-mi:psmd9_yeast(display_long)|uniprotkb:NAS2(gene name)|psi-mi:NAS2(display_short)|uniprotkb:YIL007C(locus name)|uniprotkb:Proteasome non-ATPase subunit 2(gene name synonym)	psi-mi:prs6a_yeast(display_long)|uniprotkb:RPT5(gene name)|psi-mi:RPT5(display_short)|uniprotkb:YTA1(gene name synonym)|uniprotkb:YOR117W(locus name)|uniprotkb:O3258(orf name)|uniprotkb:YOR3258W(orf name)|uniprotkb:Tat-binding protein homolog 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360297|imex:IM-12191-11	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000001269|ensemblfungi:YIL007C(gene)|ensemblfungi:YIL007C_mRNA(transcript)|rcsb pdb:3WHL|rcsb pdb:4O06|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR001478(PDZ/DHR/GLGF)|interpro:IPR035269|interpro:IPR036034|interpro:IPR040815|rcsb pdb:3WHJ|refseq:NP_012259.3|mint:P40555|dip:DIP-1893N	sgd:S000005643|rcsb pdb:3WHL|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|rcsb pdb:3WHK|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|ensemblfungi:YOR117W(gene)|ensemblfungi:YOR117W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035254|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|refseq:NP_014760.3|mint:P33297|dip:DIP-1590N	psi-mi:"MI:0469"(intact)	crc64:1BA966C5B7B2D02B	crc64:C215422033FCE830	comment:Coprecipitation of endogenous Rpt4 and Rpt5 with chromosomally expressed Nas2-Flag.|figure legend:Fig. 4A|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:BCmwaybo0JCsPQNzGbZzybhsDr0559292	rogid:jsQE3SjBA0ZZcysuLgFe/5M6pOc559292	intact-crc:882FE7C0088A7D52|rigid:IJ7bKHEE0QxGv4p4Ytahss2dyXA	false	flag tag:?-?	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P53549	uniprotkb:P33297	intact:EBI-18520|uniprotkb:Q08718|uniprotkb:D6W2W0|ensemblfungi:YOR259C	intact:EBI-13920|uniprotkb:D6W2H6|ensemblfungi:YOR117W	psi-mi:prs10_yeast(display_long)|uniprotkb:RPT4(gene name)|psi-mi:RPT4(display_short)|uniprotkb:CRL13(gene name synonym)|uniprotkb:PCS1(gene name synonym)|uniprotkb:SUG2(gene name synonym)|uniprotkb:26S protease subunit SUG2(gene name synonym)|uniprotkb:Proteasomal cap subunit(gene name synonym)|uniprotkb:YOR259C(locus name)	psi-mi:prs6a_yeast(display_long)|uniprotkb:RPT5(gene name)|psi-mi:RPT5(display_short)|uniprotkb:YTA1(gene name synonym)|uniprotkb:YOR117W(locus name)|uniprotkb:O3258(orf name)|uniprotkb:YOR3258W(orf name)|uniprotkb:Tat-binding protein homolog 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360384|imex:IM-12191-10	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005785|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|rcsb pdb:5MPB|ensemblfungi:YOR259C(gene)|ensemblfungi:YOR259C_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006289"(nucleotide-excision repair)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0019904"(protein domain specific binding)|go:"GO:0030433"(ubiquitin-dependent ERAD pathway)|go:"GO:0031597"(cytosolic proteasome complex)|go:"GO:0031625"(ubiquitin protein ligase binding)|go:"GO:0032968"(positive regulation of transcription elongation from RNA polymerase II promoter)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|refseq:NP_014902.3|dip:DIP-1589N|mint:P53549	sgd:S000005643|rcsb pdb:3WHL|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|rcsb pdb:3WHK|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|ensemblfungi:YOR117W(gene)|ensemblfungi:YOR117W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035254|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|refseq:NP_014760.3|mint:P33297|dip:DIP-1590N	psi-mi:"MI:0469"(intact)	crc64:0EA42A599E2B2E2A	crc64:C215422033FCE830	figure legend:Supp. Fig. 3B|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:ZWrHVXeF+u+1NSq2hgELa61z4UE559292	rogid:jsQE3SjBA0ZZcysuLgFe/5M6pOc559292	intact-crc:AABC3957A4885FE2|rigid:jzobsaB/fyUuayz6QIPIWtAeeYI	false	flag tag:?-?	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P50086	uniprotkb:P38348	intact:EBI-14028|ensemblfungi:YGR232W|uniprotkb:D6VV12	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	psi-mi:psd10_yeast(display_long)|uniprotkb:NAS6(gene name)|psi-mi:NAS6(display_short)|uniprotkb:YGR232W(locus name)|uniprotkb:G8564(orf name)|uniprotkb:Proteasome non-ATPase subunit 6(gene name synonym)	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360469|imex:IM-12191-12	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblfungi:YGR232W(gene)|ensemblfungi:YGR232W_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0070682"(proteasome regulatory particle assembly)|go:"GO:1904855"(proteasome regulatory particle binding)|interpro:IPR002110(Ankyrin)|interpro:IPR020683|interpro:IPR036770|rcsb pdb:1IXV|rcsb pdb:1WG0|rcsb pdb:2DZN|rcsb pdb:2DZO|reactome:R-SCE-8948751|sgd:S000003464|refseq:NP_011748.3|mint:P50086|dip:DIP-1591N	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	psi-mi:"MI:0469"(intact)	crc64:6B30C0DD034A6289	crc64:8B739BCC9A46A63E	figure legend:Supp. Fig. 7B|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:NaPb5AaHRJ7n1VSLw53EIq4YxuY559292	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	intact-crc:FE83A2B4104C6E81|rigid:C/qoQ1LEpTqrwXr+NfY9FBudaU0	false	-	flag tag:?-?	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P38348	uniprotkb:P53196	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-23691|uniprotkb:D6VUD4|ensemblfungi:YGL004C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn14_yeast(display_long)|uniprotkb:YGL004C(locus name)|uniprotkb:RPN14(gene name)|psi-mi:RPN14(display_short)|uniprotkb:Proteasome non-ATPase subunit 14(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360475|imex:IM-12191-13	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_011511.3|sgd:S000002972|dip:DIP-6617N|mint:P53196|ensemblfungi:YGL004C(gene)|ensemblfungi:YGL004C_mRNA(transcript)|go:"GO:0000502"(proteasome complex)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR001680(WD40 repeat)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR036322|rcsb pdb:3ACP|rcsb pdb:3VL1	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:025CAB9A872E1AB8	figure legend:Supp. Fig. 7B|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:kw/bMqSD6+pYWDNLN+8hFRV53ZE559292	intact-crc:BD8FFFB6769506B9|rigid:q5rT8B4ItJIIl/AKbSQuNbrDQ0s	false	flag tag:?-?	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P38348	uniprotkb:P33297	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-13920|uniprotkb:D6W2H6|ensemblfungi:YOR117W	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:prs6a_yeast(display_long)|uniprotkb:RPT5(gene name)|psi-mi:RPT5(display_short)|uniprotkb:YTA1(gene name synonym)|uniprotkb:YOR117W(locus name)|uniprotkb:O3258(orf name)|uniprotkb:YOR3258W(orf name)|uniprotkb:Tat-binding protein homolog 1(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360481|imex:IM-12191-8	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	sgd:S000005643|rcsb pdb:3WHL|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:5A5B|rcsb pdb:5MP9|rcsb pdb:5MPA|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6EF0|rcsb pdb:6EF1|rcsb pdb:6EF2|rcsb pdb:6EF3|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|rcsb pdb:3WHK|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168|ensemblfungi:YOR117W(gene)|ensemblfungi:YOR117W_mRNA(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008540"(proteasome regulatory particle, base subcomplex)|go:"GO:0016887"(ATP hydrolysis activity)|go:"GO:0036402"(proteasome-activating activity)|go:"GO:0045899"(positive regulation of RNA polymerase II transcription preinitiation complex assembly)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR003593(AAA+ ATPase, core)|interpro:IPR003959(AAA ATPase, core)|interpro:IPR003960(AAA ATPase, conserved site)|interpro:IPR005937(26S proteasome subunit P45)|interpro:IPR027417|interpro:IPR032501|interpro:IPR035254|interpro:IPR041569|rcsb pdb:3JCO|rcsb pdb:3JCP|refseq:NP_014760.3|mint:P33297|dip:DIP-1590N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:C215422033FCE830	figure legend:Supp. Fig. 7B|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:jsQE3SjBA0ZZcysuLgFe/5M6pOc559292	intact-crc:920ED00855371A66|rigid:6Jfn/SZPl/A7JEuf9Oolbszf7Cc	false	flag tag:?-?	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:Q08723	uniprotkb:P38348	intact:EBI-36176|uniprotkb:Q6Q5I7|uniprotkb:D6W2W2|ensemblfungi:YOR261C	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	psi-mi:rpn8_yeast(display_long)|uniprotkb:RPN8(gene name)|psi-mi:RPN8(display_short)|uniprotkb:O5360(orf name)|uniprotkb:YOR261C(locus name)	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360487|imex:IM-12191-7	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005787|refseq:NP_014904.3|mint:Q08723|dip:DIP-1574N|ensemblfungi:YOR261C(gene)|ensemblfungi:YOR261C_mRNA(transcript)|go:"GO:0000502"(proteasome complex)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008237"(metallopeptidase activity)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0070122"(isopeptidase activity)|interpro:IPR000555(Mov34/MPN/PAD-1)|interpro:IPR024969|interpro:IPR033858|interpro:IPR037518|rcsb pdb:3J47|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4O8X|rcsb pdb:4O8Y|rcsb pdb:4OCL|rcsb pdb:4OCM|rcsb pdb:4OCN|rcsb pdb:4OWP|rcsb pdb:5A5B|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5U4P|rcsb pdb:5W83|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30|reactome:R-SCE-1236978|reactome:R-SCE-174113|reactome:R-SCE-5668541|reactome:R-SCE-5687128|reactome:R-SCE-5689880|reactome:R-SCE-6798695|reactome:R-SCE-68949|reactome:R-SCE-69017|reactome:R-SCE-69601|reactome:R-SCE-75815|reactome:R-SCE-8854050|reactome:R-SCE-8948751|reactome:R-SCE-983168	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	psi-mi:"MI:0469"(intact)	crc64:6EE6009545A3D0EF	crc64:8B739BCC9A46A63E	figure legend:Supp. Fig. 7B|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:kvJ/LyyQGKi5JTh4Fek1kh70jOU559292	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	intact-crc:26A9001D0010240D|rigid:6nzXB2CS3WSNocaWfJHsiF5QNxk	false	-	flag tag:?-?	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P38348	uniprotkb:O94742	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-31337|uniprotkb:D6VSZ2|ensemblfungi:YDR363W-A	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:sem1_yeast(display_long)|uniprotkb:SEM1(gene name)|psi-mi:SEM1(display_short)|uniprotkb:DSH1(gene name synonym)|uniprotkb:YDR363W-A(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360493|imex:IM-12191-14	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_010651.3|sgd:S000007235|dip:DIP-8754N|mint:O94742|ensemblfungi:YDR363W-A(gene)|ensemblfungi:YDR363W-A_mRNA(transcript)|go:"GO:0000502"(proteasome complex)|go:"GO:0000724"(double-strand break repair via homologous recombination)|go:"GO:0005829"(cytosol)|go:"GO:0006406"(mRNA export from nucleus)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0008541"(proteasome regulatory particle, lid subcomplex)|go:"GO:0016578"(histone deubiquitination)|go:"GO:0030447"(filamentous growth)|go:"GO:0034515"(proteasome storage granule)|go:"GO:0035753"(maintenance of DNA trinucleotide repeats)|go:"GO:0043161"(proteasome-mediated ubiquitin-dependent protein catabolic process)|go:"GO:0043248"(proteasome assembly)|go:"GO:0051726"(regulation of cell cycle)|go:"GO:0070390"(transcription export complex 2)|go:"GO:0072742"(SAGA complex localization to transcription regulatory region)|interpro:IPR007834(DSS1/SEM1)|rcsb pdb:3JCK|rcsb pdb:3JCO|rcsb pdb:3JCP|rcsb pdb:3T5V|rcsb pdb:4CR2|rcsb pdb:4CR3|rcsb pdb:4CR4|rcsb pdb:4TRQ|rcsb pdb:5A5B|rcsb pdb:5G5P|rcsb pdb:5L3T|rcsb pdb:5MPB|rcsb pdb:5MPC|rcsb pdb:5MPD|rcsb pdb:5MPE|rcsb pdb:5UBP|rcsb pdb:5WVI|rcsb pdb:5WVK|rcsb pdb:6FVT|rcsb pdb:6FVU|rcsb pdb:6FVV|rcsb pdb:6FVW|rcsb pdb:6FVX|rcsb pdb:6FVY|rcsb pdb:6J2C|rcsb pdb:6J2N|rcsb pdb:6J2Q|rcsb pdb:6J2X|rcsb pdb:6J30	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:B66B578ABB01E672	figure legend:Supp. Fig. 7B|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:jW26dMSkSwiSL4WsgtoWcg98j9A559292	intact-crc:811A6C4A306141D3|rigid:tv68wBCz/XcnM+ox002RsantAE8	false	flag tag:?-?	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P38348	uniprotkb:P53196	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-23691|uniprotkb:D6VUD4|ensemblfungi:YGL004C	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:rpn14_yeast(display_long)|uniprotkb:YGL004C(locus name)|uniprotkb:RPN14(gene name)|psi-mi:RPN14(display_short)|uniprotkb:Proteasome non-ATPase subunit 14(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360500|imex:IM-12191-9	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	refseq:NP_011511.3|sgd:S000002972|dip:DIP-6617N|mint:P53196|ensemblfungi:YGL004C(gene)|ensemblfungi:YGL004C_mRNA(transcript)|go:"GO:0000502"(proteasome complex)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006511"(ubiquitin-dependent protein catabolic process)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR001680(WD40 repeat)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR036322|rcsb pdb:3ACP|rcsb pdb:3VL1	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:025CAB9A872E1AB8	figure legend:Supp. Fig. 7C|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:kw/bMqSD6+pYWDNLN+8hFRV53ZE559292	intact-crc:13FAF07AC1633904|rigid:98/Q43movQYhOH5gqKRScRFcOEc	false	flag tag:?-?	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P38348	uniprotkb:P50086	intact:EBI-21152|uniprotkb:D6VQR8|ensemblfungi:YBR272C	intact:EBI-14028|ensemblfungi:YGR232W|uniprotkb:D6VV12	psi-mi:hsm3_yeast(display_long)|uniprotkb:YBR272C(locus name)|uniprotkb:YBR1740(orf name)|uniprotkb:HSM3(gene name)|psi-mi:HSM3(display_short)|uniprotkb:Enhanced spontaneous mutability protein 3(gene name synonym)	psi-mi:psd10_yeast(display_long)|uniprotkb:NAS6(gene name)|psi-mi:NAS6(display_short)|uniprotkb:YGR232W(locus name)|uniprotkb:G8564(orf name)|uniprotkb:Proteasome non-ATPase subunit 6(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Funakoshi et al. (2009)	imex:IM-12191|pubmed:19446322	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2360500|imex:IM-12191-9	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_009831.3|sgd:S000000476|dip:DIP-2748N|ensemblfungi:YBR272C(gene)|ensemblfungi:YBR272C_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006298"(mismatch repair)|go:"GO:0070682"(proteasome regulatory particle assembly)|interpro:IPR016024(Armadillo-type fold)|interpro:IPR040752|interpro:IPR041335|rcsb pdb:3VLD|rcsb pdb:3VLE|rcsb pdb:3VLF|rcsb pdb:4A3T|rcsb pdb:4A3V|rcsb pdb:4FP7|rcsb pdb:4JPO	ensemblfungi:YGR232W(gene)|ensemblfungi:YGR232W_mRNA(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0070682"(proteasome regulatory particle assembly)|go:"GO:1904855"(proteasome regulatory particle binding)|interpro:IPR002110(Ankyrin)|interpro:IPR020683|interpro:IPR036770|rcsb pdb:1IXV|rcsb pdb:1WG0|rcsb pdb:2DZN|rcsb pdb:2DZO|reactome:R-SCE-8948751|sgd:S000003464|refseq:NP_011748.3|mint:P50086|dip:DIP-1591N	psi-mi:"MI:0469"(intact)	crc64:8B739BCC9A46A63E	crc64:6B30C0DD034A6289	figure legend:Supp. Fig. 7C|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/06/24	2014/10/16	rogid:I5Q4TpW81snHiMB3lXg5h35wXs8559292	rogid:NaPb5AaHRJ7n1VSLw53EIq4YxuY559292	intact-crc:13FAF07AC1633904|rigid:98/Q43movQYhOH5gqKRScRFcOEc	false	flag tag:?-?	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)