#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:Q9ZVD5 uniprotkb:F4JW79 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 intact:EBI-2352225|ensemblplants:AT5G04290.1 psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:rdm3_arath(display_long)|uniprotkb:KOW domain-containing transcription factor 1(gene name synonym)|uniprotkb:KTF1(gene name synonym)|uniprotkb:Protein SPT5-like(gene name synonym)|uniprotkb:RDM3(gene name)|psi-mi:RDM3(display_short)|uniprotkb:SPT5L(gene name synonym)|uniprotkb:T19N18.20(orf name)|uniprotkb:At5g04290(locus name) psi-mi:"MI:0096"(pull down) He et al. (2009) imex:IM-12181|pubmed:19410546 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-2352217|imex:IM-12181-2 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 refseq:NP_196049.1|interpro:IPR005824(KOW)|interpro:IPR005100(Supt5 repeat)|interpro:IPR039659|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR039385|interpro:IPR036735|interpro:IPR041973|interpro:IPR041977|ensemblplants:AT5G04290(gene)|ensemblplants:AT5G04290.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003682"(chromatin binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0006368"(transcription elongation from RNA polymerase II promoter)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0032044"(DSIF complex)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation) psi-mi:"MI:0469"(intact) - - figure legend:Fig. 4D|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2009/06/08 2014/10/16 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 rogid:35SC41LxJuat5CWGo8ddVSIppZs3702 intact-crc:8C17DD9D480202D5|rigid:+1jCLSvtxONENrtOTySyffTfZVA false myc tag:?-? glutathione s tranferase tag:?-?|sufficient binding region:1104-1310|sufficient binding region:1304-1476 - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:Q5D869 uniprotkb:Q9ZVD5 intact:EBI-2352263|uniprotkb:O04206|uniprotkb:O04207|uniprotkb:Q1L5X4|ensemblplants:AT2G40030.1 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 psi-mi:nrpe1_arath(display_long)|uniprotkb:NRPE1(gene name)|psi-mi:NRPE1(display_short)|uniprotkb:DMS5(gene name synonym)|uniprotkb:At2g40030(locus name)|uniprotkb:DRD3(gene name synonym)|uniprotkb:NRPD1b(gene name synonym)|uniprotkb:RMD1(gene name synonym)|uniprotkb:RPE1(gene name synonym)|uniprotkb:DNA-directed RNA polymerase D subunit 1b(gene name synonym)|uniprotkb:Protein DEFECTIVE IN MERISTEM SILENCING 5(gene name synonym)|uniprotkb:Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3(gene name synonym)|uniprotkb:Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1(gene name synonym)|uniprotkb:RNA polymerase IV subunit 1(gene name synonym)|uniprotkb:T28M21.19(orf name)|uniprotkb:DNA-directed RNA polymerase E subunit 1(gene name synonym) psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:"MI:0096"(pull down) He et al. (2009) imex:IM-12181|pubmed:19410546 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-2352254|imex:IM-12181-1 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_181532.2|dip:DIP-48678N|ensemblplants:AT2G40030(gene)|ensemblplants:AT2G40030.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0016604"(nuclear body)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0046872"(metal ion binding)|go:"GO:0050832"(defense response to fungus)|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR040402|interpro:IPR040403|interpro:IPR042102 refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 psi-mi:"MI:0469"(intact) - - figure legend:Fig. 4D|caution:"The TAIR/UniProtKB NRPE1 protein transcript is longer (1976aa) than that described in the text (1874) therefore the c-terminal domain has not been accurately described as a feature."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2009/06/08 2014/10/16 rogid:6ybhh5BEMBi/ieZFd4n7wFyWr/E3702 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 intact-crc:279382CE4D67937E|rigid:U5CcQwaDshyJcsBp6lc/AxHxkaM false glutathione s tranferase tag:?-?|sufficient binding region:?-? myc tag:?-? - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:F4JW79 uniprotkb:Q9ZVD5 intact:EBI-2352225|ensemblplants:AT5G04290.1 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 psi-mi:rdm3_arath(display_long)|uniprotkb:KOW domain-containing transcription factor 1(gene name synonym)|uniprotkb:KTF1(gene name synonym)|uniprotkb:Protein SPT5-like(gene name synonym)|uniprotkb:RDM3(gene name)|psi-mi:RDM3(display_short)|uniprotkb:SPT5L(gene name synonym)|uniprotkb:T19N18.20(orf name)|uniprotkb:At5g04290(locus name) psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) He et al. (2009) imex:IM-12181|pubmed:19410546 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-2352297|imex:IM-12181-3 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_196049.1|interpro:IPR005824(KOW)|interpro:IPR005100(Supt5 repeat)|interpro:IPR039659|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR039385|interpro:IPR036735|interpro:IPR041973|interpro:IPR041977|ensemblplants:AT5G04290(gene)|ensemblplants:AT5G04290.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003682"(chromatin binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0006368"(transcription elongation from RNA polymerase II promoter)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0032044"(DSIF complex)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation) refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 psi-mi:"MI:0469"(intact) - - figure legend:Fig. 4E|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2009/06/08 2014/10/16 rogid:35SC41LxJuat5CWGo8ddVSIppZs3702 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 intact-crc:073C99F34337724C|rigid:+1jCLSvtxONENrtOTySyffTfZVA false sufficient binding region:1104-1476|glutathione s tranferase tag:?-? myc tag:?-? - - psi-mi:"MI:0705"(anti tag western blot) psi-mi:"MI:0705"(anti tag western blot) uniprotkb:Q5D869 uniprotkb:Q9ZVD5 intact:EBI-2352263|uniprotkb:O04206|uniprotkb:O04207|uniprotkb:Q1L5X4|ensemblplants:AT2G40030.1 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 psi-mi:nrpe1_arath(display_long)|uniprotkb:NRPE1(gene name)|psi-mi:NRPE1(display_short)|uniprotkb:DMS5(gene name synonym)|uniprotkb:At2g40030(locus name)|uniprotkb:DRD3(gene name synonym)|uniprotkb:NRPD1b(gene name synonym)|uniprotkb:RMD1(gene name synonym)|uniprotkb:RPE1(gene name synonym)|uniprotkb:DNA-directed RNA polymerase D subunit 1b(gene name synonym)|uniprotkb:Protein DEFECTIVE IN MERISTEM SILENCING 5(gene name synonym)|uniprotkb:Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3(gene name synonym)|uniprotkb:Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1(gene name synonym)|uniprotkb:RNA polymerase IV subunit 1(gene name synonym)|uniprotkb:T28M21.19(orf name)|uniprotkb:DNA-directed RNA polymerase E subunit 1(gene name synonym) psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) He et al. (2009) imex:IM-12181|pubmed:19410546 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-2352307|imex:IM-12181-4 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_181532.2|dip:DIP-48678N|ensemblplants:AT2G40030(gene)|ensemblplants:AT2G40030.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0016604"(nuclear body)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0046872"(metal ion binding)|go:"GO:0050832"(defense response to fungus)|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR040402|interpro:IPR040403|interpro:IPR042102 refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 psi-mi:"MI:0469"(intact) - - figure legend:Fig. 4E|caution:"The TAIR/UniProtKB NRPE1 protein transcript is longer (1976aa) than that described in the text (1874) therefore the c-terminal domain has not been accurately described as a feature."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2009/06/08 2014/10/16 rogid:6ybhh5BEMBi/ieZFd4n7wFyWr/E3702 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 intact-crc:8EACE9BEEA553D0C|rigid:U5CcQwaDshyJcsBp6lc/AxHxkaM false glutathione s tranferase tag:?-?|sufficient binding region:?-? myc tag:?-? - - psi-mi:"MI:0705"(anti tag western blot) psi-mi:"MI:0705"(anti tag western blot) uniprotkb:Q9ZVD5 uniprotkb:F4JW79 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 intact:EBI-2352225|ensemblplants:AT5G04290.1 psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:rdm3_arath(display_long)|uniprotkb:KOW domain-containing transcription factor 1(gene name synonym)|uniprotkb:KTF1(gene name synonym)|uniprotkb:Protein SPT5-like(gene name synonym)|uniprotkb:RDM3(gene name)|psi-mi:RDM3(display_short)|uniprotkb:SPT5L(gene name synonym)|uniprotkb:T19N18.20(orf name)|uniprotkb:At5g04290(locus name) psi-mi:"MI:0007"(anti tag coimmunoprecipitation) He et al. (2009) imex:IM-12181|pubmed:19410546 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-2352325|imex:IM-12181-5 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 refseq:NP_196049.1|interpro:IPR005824(KOW)|interpro:IPR005100(Supt5 repeat)|interpro:IPR039659|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR039385|interpro:IPR036735|interpro:IPR041973|interpro:IPR041977|ensemblplants:AT5G04290(gene)|ensemblplants:AT5G04290.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003682"(chromatin binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0006368"(transcription elongation from RNA polymerase II promoter)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0032044"(DSIF complex)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation) psi-mi:"MI:0469"(intact) - - figure legend:Fig. 4G|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-flower)|taxid:3702(Arabidopsis thaliana flower) - 2009/06/08 2014/10/16 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 rogid:35SC41LxJuat5CWGo8ddVSIppZs3702 intact-crc:4D172B893D1F1659|rigid:+1jCLSvtxONENrtOTySyffTfZVA false myc tag:?-? - - - psi-mi:"MI:0113"(western blot) psi-mi:"MI:0113"(western blot) uniprotkb:Q9ZVD5 uniprotkb:F4JW79 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 intact:EBI-2352225|ensemblplants:AT5G04290.1 psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:rdm3_arath(display_long)|uniprotkb:KOW domain-containing transcription factor 1(gene name synonym)|uniprotkb:KTF1(gene name synonym)|uniprotkb:Protein SPT5-like(gene name synonym)|uniprotkb:RDM3(gene name)|psi-mi:RDM3(display_short)|uniprotkb:SPT5L(gene name synonym)|uniprotkb:T19N18.20(orf name)|uniprotkb:At5g04290(locus name) psi-mi:"MI:0006"(anti bait coimmunoprecipitation) He et al. (2009) imex:IM-12181|pubmed:19410546 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-2352341|imex:IM-12181-8 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 refseq:NP_196049.1|interpro:IPR005824(KOW)|interpro:IPR005100(Supt5 repeat)|interpro:IPR039659|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR039385|interpro:IPR036735|interpro:IPR041973|interpro:IPR041977|ensemblplants:AT5G04290(gene)|ensemblplants:AT5G04290.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003682"(chromatin binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0006368"(transcription elongation from RNA polymerase II promoter)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0032044"(DSIF complex)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation) psi-mi:"MI:0469"(intact) - - figure legend:Fig. 4F|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath-flower)|taxid:3702(Arabidopsis thaliana flower) - 2009/06/08 2014/10/16 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 rogid:35SC41LxJuat5CWGo8ddVSIppZs3702 intact-crc:BD7C7AB234B24CDA|rigid:+1jCLSvtxONENrtOTySyffTfZVA false myc tag:?-? - - - psi-mi:"MI:0705"(anti tag western blot) psi-mi:"MI:0705"(anti tag western blot) uniprotkb:F4JW79 uniprotkb:Q9ZVD5 intact:EBI-2352225|ensemblplants:AT5G04290.1 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 psi-mi:rdm3_arath(display_long)|uniprotkb:KOW domain-containing transcription factor 1(gene name synonym)|uniprotkb:KTF1(gene name synonym)|uniprotkb:Protein SPT5-like(gene name synonym)|uniprotkb:RDM3(gene name)|psi-mi:RDM3(display_short)|uniprotkb:SPT5L(gene name synonym)|uniprotkb:T19N18.20(orf name)|uniprotkb:At5g04290(locus name) psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:"MI:0416"(fluorescence microscopy) He et al. (2009) imex:IM-12181|pubmed:19410546 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0403"(colocalization) psi-mi:"MI:0469"(IntAct) intact:EBI-2352354|imex:IM-12181-6 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_196049.1|interpro:IPR005824(KOW)|interpro:IPR005100(Supt5 repeat)|interpro:IPR039659|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR039385|interpro:IPR036735|interpro:IPR041973|interpro:IPR041977|ensemblplants:AT5G04290(gene)|ensemblplants:AT5G04290.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003682"(chromatin binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0006368"(transcription elongation from RNA polymerase II promoter)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0032044"(DSIF complex)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation) refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 go:"GO:0005634"(nucleus) - - figure legend:Fig. 5B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") - 2009/06/08 2014/10/16 rogid:35SC41LxJuat5CWGo8ddVSIppZs3702 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 intact-crc:74D354E68F349A3D|rigid:+1jCLSvtxONENrtOTySyffTfZVA false - myc tag:?-? - - psi-mi:"MI:0422"(immunostaining) psi-mi:"MI:0422"(immunostaining) uniprotkb:Q5D869 uniprotkb:Q9ZVD5 intact:EBI-2352263|uniprotkb:O04206|uniprotkb:O04207|uniprotkb:Q1L5X4|ensemblplants:AT2G40030.1 intact:EBI-2352199|uniprotkb:Q93VG2|ensemblplants:AT2G27040.1|ensemblplants:AT2G27040.2 psi-mi:nrpe1_arath(display_long)|uniprotkb:NRPE1(gene name)|psi-mi:NRPE1(display_short)|uniprotkb:DMS5(gene name synonym)|uniprotkb:At2g40030(locus name)|uniprotkb:DRD3(gene name synonym)|uniprotkb:NRPD1b(gene name synonym)|uniprotkb:RMD1(gene name synonym)|uniprotkb:RPE1(gene name synonym)|uniprotkb:DNA-directed RNA polymerase D subunit 1b(gene name synonym)|uniprotkb:Protein DEFECTIVE IN MERISTEM SILENCING 5(gene name synonym)|uniprotkb:Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3(gene name synonym)|uniprotkb:Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1(gene name synonym)|uniprotkb:RNA polymerase IV subunit 1(gene name synonym)|uniprotkb:T28M21.19(orf name)|uniprotkb:DNA-directed RNA polymerase E subunit 1(gene name synonym) psi-mi:ago4_arath(display_long)|uniprotkb:At2g27040(locus name)|uniprotkb:AGO4(gene name)|psi-mi:AGO4(display_short)|uniprotkb:OCP11(gene name synonym)|uniprotkb:Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 11(gene name synonym)|uniprotkb:T20P8.9(orf name) psi-mi:"MI:0416"(fluorescence microscopy) He et al. (2009) imex:IM-12181|pubmed:19410546 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0403"(colocalization) psi-mi:"MI:0469"(IntAct) intact:EBI-2352382|imex:IM-12181-7 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0497"(neutral component) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_181532.2|dip:DIP-48678N|ensemblplants:AT2G40030(gene)|ensemblplants:AT2G40030.1(transcript)|go:"GO:0000419"(RNA polymerase V complex)|go:"GO:0003677"(DNA binding)|go:"GO:0003899"(DNA-directed 5'-3' RNA polymerase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005666"(RNA polymerase III complex)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0016604"(nuclear body)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0046872"(metal ion binding)|go:"GO:0050832"(defense response to fungus)|interpro:IPR000722(RNA polymerase, alpha subunit)|interpro:IPR006592(RNA polymerase, N-terminal)|interpro:IPR007066(RNA polymerase Rpb1, domain 3)|interpro:IPR007081(RNA polymerase Rpb1, domain 5)|interpro:IPR040402|interpro:IPR040403|interpro:IPR042102 refseq:NP_001189613.1|refseq:NP_565633.1|dip:DIP-53402N|mint:Q9ZVD5|ensemblplants:AT2G27040(gene)|ensemblplants:AT2G27040.1(transcript)|ensemblplants:AT2G27040.2(transcript)|go:"GO:0000791"(euchromatin)|go:"GO:0003682"(chromatin binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0006306"(DNA methylation)|go:"GO:0006342"|go:"GO:0006417"(regulation of translation)|go:"GO:0015030"(Cajal body)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0019048"(modulation by virus of host process)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0031048"(heterochromatin assembly by small RNA)|go:"GO:0035197"(siRNA binding)|go:"GO:0035198"(miRNA binding)|go:"GO:0042742"(defense response to bacterium)|go:"GO:0051567"(histone H3-K9 methylation)|go:"GO:0051607"(defense response to virus)|go:"GO:0070919"(production of siRNA involved in gene silencing by small RNA)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation)|interpro:IPR003100(Argonaute and Dicer protein, PAZ)|interpro:IPR003165(Stem cell self-renewal protein Piwi)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR014811(Region of unknown function DUF1785)|interpro:IPR032472|interpro:IPR032473|interpro:IPR032474|interpro:IPR036085|interpro:IPR036397 go:"GO:0005634"(nucleus) - - figure legend:Fig. 5B|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") - 2009/06/08 2014/10/16 rogid:6ybhh5BEMBi/ieZFd4n7wFyWr/E3702 rogid:MWChcDa12vBM7yFUwJdFQ5YG51k3702 intact-crc:A8084D91CD00A711|rigid:U5CcQwaDshyJcsBp6lc/AxHxkaM false - myc tag:?-? - - psi-mi:"MI:0422"(immunostaining) psi-mi:"MI:0422"(immunostaining) intact:EBI-2352391 uniprotkb:F4JW79 - intact:EBI-2352225|ensemblplants:AT5G04290.1 psi-mi:rd29a_arath_prom_rna(display_short)|psi-mi:EBI-2352391(display_long) psi-mi:rdm3_arath(display_long)|uniprotkb:KOW domain-containing transcription factor 1(gene name synonym)|uniprotkb:KTF1(gene name synonym)|uniprotkb:Protein SPT5-like(gene name synonym)|uniprotkb:RDM3(gene name)|psi-mi:RDM3(display_short)|uniprotkb:SPT5L(gene name synonym)|uniprotkb:T19N18.20(orf name)|uniprotkb:At5g04290(locus name) psi-mi:"MI:0413"(electrophoretic mobility shift assay) He et al. (2009) imex:IM-12181|pubmed:19410546 taxid:-2(chemical synthesis)|taxid:-2("Chemical synthesis (Chemical synthesis)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0407"(direct interaction) psi-mi:"MI:0469"(IntAct) intact:EBI-2352404|imex:IM-12181-9 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0320"(ribonucleic acid) psi-mi:"MI:0326"(protein) - refseq:NP_196049.1|interpro:IPR005824(KOW)|interpro:IPR005100(Supt5 repeat)|interpro:IPR039659|interpro:IPR014722(Translation protein SH3-like, subgroup)|interpro:IPR039385|interpro:IPR036735|interpro:IPR041973|interpro:IPR041977|ensemblplants:AT5G04290(gene)|ensemblplants:AT5G04290.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003682"(chromatin binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0006306"(DNA methylation)|go:"GO:0006357"(regulation of transcription by RNA polymerase II)|go:"GO:0006368"(transcription elongation from RNA polymerase II promoter)|go:"GO:0016458"(obsolete gene silencing)|go:"GO:0030422"(production of siRNA involved in RNA interference)|go:"GO:0032044"(DSIF complex)|go:"GO:0032784"(regulation of DNA-templated transcription, elongation)|go:"GO:0080188"(gene silencing by RNA-directed DNA methylation) - comment:RNA corresponding to region described in EMBL record AY973635 - comment:RNA is 32P radio-labelled.|comment:The KTF1 P3 region binds to both the forward and reverse strands of the 40 nt RD25A RNA. RNA must be single stranded and KTF1 P3 region does not bind to the corresponding DNA region.|figure legend:Fig. 6|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:-1(in vitro)|taxid:-1(In vitro) - 2009/06/08 2014/10/16 - rogid:35SC41LxJuat5CWGo8ddVSIppZs3702 intact-crc:BEF1C73F8A327CD1 false - necessary binding region:1304-1476 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant)