#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:P14712	uniprotkb:P14712	intact:EBI-624446|ensemblplants:AT1G09570.5|ensemblplants:AT1G09570.6|ensemblplants:AT1G09570.1|ensemblplants:AT1G09570.4|uniprotkb:B3H6K9	intact:EBI-624446|ensemblplants:AT1G09570.5|ensemblplants:AT1G09570.6|ensemblplants:AT1G09570.1|ensemblplants:AT1G09570.4|uniprotkb:B3H6K9	psi-mi:phya_arath(display_long)|uniprotkb:PHYA(gene name)|psi-mi:PHYA(display_short)|uniprotkb:HY8(gene name synonym)|uniprotkb:At1g09570(locus name)|uniprotkb:F14J9.23(orf name)|uniprotkb:FHY2(gene name synonym)|uniprotkb:FRE1(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED HYPOCOTYL 2(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED 1(gene name synonym)|uniprotkb:Protein ELONGATED HYPOCOTYL 8(gene name synonym)	psi-mi:phya_arath(display_long)|uniprotkb:PHYA(gene name)|psi-mi:PHYA(display_short)|uniprotkb:HY8(gene name synonym)|uniprotkb:At1g09570(locus name)|uniprotkb:F14J9.23(orf name)|uniprotkb:FHY2(gene name synonym)|uniprotkb:FRE1(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED HYPOCOTYL 2(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED 1(gene name synonym)|uniprotkb:Protein ELONGATED HYPOCOTYL 8(gene name synonym)	psi-mi:"MI:0018"(two hybrid)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295231|imex:IM-19297-1	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT1G09570.4(transcript)|ensemblplants:AT1G09570.5(transcript)|ensemblplants:AT1G09570.6(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0003729"(mRNA binding)|go:"GO:0004672"(protein kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010201"(response to continuous far red light stimulus by the high-irradiance response system)|go:"GO:0010203"(response to very low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0046685"(response to arsenic-containing substance)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|ensemblplants:AT1G09570(gene)|ensemblplants:AT1G09570.1(transcript)|refseq:NP_001117256.1|refseq:NP_172428.1|refseq:NP_001322907.1|refseq:NP_001322908.1|refseq:NP_001322909.1|dip:DIP-33461N	ensemblplants:AT1G09570.4(transcript)|ensemblplants:AT1G09570.5(transcript)|ensemblplants:AT1G09570.6(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0003729"(mRNA binding)|go:"GO:0004672"(protein kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010201"(response to continuous far red light stimulus by the high-irradiance response system)|go:"GO:0010203"(response to very low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0046685"(response to arsenic-containing substance)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|ensemblplants:AT1G09570(gene)|ensemblplants:AT1G09570.1(transcript)|refseq:NP_001117256.1|refseq:NP_172428.1|refseq:NP_001322907.1|refseq:NP_001322908.1|refseq:NP_001322909.1|dip:DIP-33461N	-	-	-	figure legend:Figure 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/03/24	2014/10/16	rogid:CKVh1QT3o0sJCwH/6XMG4NRoSnE3702	rogid:CKVh1QT3o0sJCwH/6XMG4NRoSnE3702	intact-crc:C2C9984A8F17C0D8|rigid:FtwYN6fEwf/OiyUSjnIYBW7FqeI	false	sufficient binding region:930-1122	sufficient binding region:930-1122	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P42497	uniprotkb:P42497	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:"MI:0018"(two hybrid)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295240|imex:IM-19297-2	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/03/24	2014/10/16	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	intact-crc:4F0EF9410F3A7973|rigid:yyIc67g9SDofOGJ2jFsIINM2CAQ	false	sufficient binding region:955-1164	sufficient binding region:955-1164	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P42497	uniprotkb:P14713	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:"MI:0018"(two hybrid)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295249|imex:IM-19297-3	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	-	-	-	figure legend:Figure 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/03/24	2014/10/16	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	intact-crc:0107071CD5A37C1C|rigid:iUoRNBe78Lk3ufvxp58/eWYTZQ0	false	sufficient binding region:955-1164	sufficient binding region:962-1172	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P14713	uniprotkb:P42498	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	intact:EBI-624404|ensemblplants:AT4G18130.1|uniprotkb:Q56Y99	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:phye_arath(display_long)|uniprotkb:PHYE(gene name)|psi-mi:PHYE(display_short)|uniprotkb:At4g18130(locus name)|uniprotkb:F15J5.100(orf name)	psi-mi:"MI:0018"(two hybrid)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295258|imex:IM-19297-4	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|ensemblplants:AT4G18130(gene)|ensemblplants:AT4G18130.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193547.4|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/03/24	2014/10/16	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	rogid:nEW5g0f0xNE/U0TzCJ6++md8cc43702	intact-crc:8244D99BA1A112F7|rigid:MiKJp0o8BuO807W90sSrvRVuvLY	false	necessary binding region:620-961	necessary binding region:570-904	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P42498	uniprotkb:P42497	intact:EBI-624404|ensemblplants:AT4G18130.1|uniprotkb:Q56Y99	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	psi-mi:phye_arath(display_long)|uniprotkb:PHYE(gene name)|psi-mi:PHYE(display_short)|uniprotkb:At4g18130(locus name)|uniprotkb:F15J5.100(orf name)	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:"MI:0018"(two hybrid)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295267|imex:IM-19297-5	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|ensemblplants:AT4G18130(gene)|ensemblplants:AT4G18130.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193547.4|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/03/24	2014/10/16	rogid:nEW5g0f0xNE/U0TzCJ6++md8cc43702	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	intact-crc:846BDFC8412D85A2|rigid:Un/f0RqUancKtlpiA/o9OG83mYI	false	sufficient binding region:905-1112	sufficient binding region:955-1164	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P14713	uniprotkb:P14713	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:"MI:0018"(two hybrid)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295276|imex:IM-19297-6	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	-	-	-	figure legend:Figure 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/03/24	2014/10/16	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	intact-crc:F4E38A4027018E0F|rigid:6MmV9YHulZ693sCR8cK9uZcoI8Y	false	sufficient binding region:962-1172	sufficient binding region:962-1172	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P14713	uniprotkb:P42497	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:"MI:0018"(two hybrid)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295285|imex:IM-19297-7	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/03/24	2014/10/16	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	intact-crc:530D0125EB65C0FE|rigid:iUoRNBe78Lk3ufvxp58/eWYTZQ0	false	sufficient binding region:962-1172	sufficient binding region:955-1164	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P42498	uniprotkb:P42497	intact:EBI-624404|ensemblplants:AT4G18130.1|uniprotkb:Q56Y99	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	psi-mi:phye_arath(display_long)|uniprotkb:PHYE(gene name)|psi-mi:PHYE(display_short)|uniprotkb:At4g18130(locus name)|uniprotkb:F15J5.100(orf name)	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:"MI:0018"(two hybrid)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295293|imex:IM-19297-8	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|ensemblplants:AT4G18130(gene)|ensemblplants:AT4G18130.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193547.4|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2009/03/24	2014/10/16	rogid:nEW5g0f0xNE/U0TzCJ6++md8cc43702	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	intact-crc:090094160AB84803|rigid:Un/f0RqUancKtlpiA/o9OG83mYI	false	sufficient binding region:905-1112	sufficient binding region:955-1164	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P14713	uniprotkb:P14713	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:"MI:0807"(comigration in gel electrophoresis)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0407"(direct interaction)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295307|imex:IM-19297-9	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	-	-	-	figure legend:Figure S1|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2009/03/24	2014/10/16	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	intact-crc:7FB962CD8376A3F3|rigid:JdGY53wU4Ps4js0/v/OyqeGjDag	false	35s radiolabel:?-?	35s radiolabel:?-?	2	0	psi-mi:"MI:0833"(autoradiography)	psi-mi:"MI:0833"(autoradiography)
uniprotkb:P14714	uniprotkb:P14713	intact:EBI-624366|ensemblplants:AT5G35840.1	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	psi-mi:phyc_arath(display_long)|uniprotkb:PHYC(gene name)|psi-mi:PHYC(display_short)|uniprotkb:At5g35840(locus name)|uniprotkb:MIK22.15(orf name)	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295320|imex:IM-19297-10	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT5G35840(gene)|ensemblplants:AT5G35840.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_198433.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR001610(PAC motif)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	-	-	-	figure legend:Figure 2 Figure 3|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:UyqyX8REK/Eoi6FWXS+MMJAhbz03702	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	intact-crc:A3084688786FBA29|rigid:cejE1p9GtgGCbYkiy/NRWb9TsiI	false	myc tag:n-n	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P14714	uniprotkb:P42497	intact:EBI-624366|ensemblplants:AT5G35840.1	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	psi-mi:phyc_arath(display_long)|uniprotkb:PHYC(gene name)|psi-mi:PHYC(display_short)|uniprotkb:At5g35840(locus name)|uniprotkb:MIK22.15(orf name)	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295327|imex:IM-19297-11	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT5G35840(gene)|ensemblplants:AT5G35840.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_198433.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR001610(PAC motif)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 2 Figure 3|comment:"The authors noted that PhyC \"very weakly pull down phyD\"."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:UyqyX8REK/Eoi6FWXS+MMJAhbz03702	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	intact-crc:0E6248FC175BD35A|rigid:oRH2TtZMZ1bcjmwOJUxFzUqx6fM	false	myc tag:n-n	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P14714	uniprotkb:P14713	intact:EBI-624366|ensemblplants:AT5G35840.1	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	psi-mi:phyc_arath(display_long)|uniprotkb:PHYC(gene name)|psi-mi:PHYC(display_short)|uniprotkb:At5g35840(locus name)|uniprotkb:MIK22.15(orf name)	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295335|imex:IM-19297-12	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT5G35840(gene)|ensemblplants:AT5G35840.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_198433.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR001610(PAC motif)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	-	-	-	figure legend:Figure 2|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:UyqyX8REK/Eoi6FWXS+MMJAhbz03702	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	intact-crc:D0EA9CEEBCC96F5E|rigid:cejE1p9GtgGCbYkiy/NRWb9TsiI	false	myc tag:c-c	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P42497	uniprotkb:P14714	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	intact:EBI-624366|ensemblplants:AT5G35840.1	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:phyc_arath(display_long)|uniprotkb:PHYC(gene name)|psi-mi:PHYC(display_short)|uniprotkb:At5g35840(locus name)|uniprotkb:MIK22.15(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295342|imex:IM-19297-13	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	ensemblplants:AT5G35840(gene)|ensemblplants:AT5G35840.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_198433.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR001610(PAC motif)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 2|comment:"The authors noted that PhyC \"very weakly pull down phyD\"."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	rogid:UyqyX8REK/Eoi6FWXS+MMJAhbz03702	intact-crc:F7ACFEEE58D8AEFD|rigid:oRH2TtZMZ1bcjmwOJUxFzUqx6fM	false	-	myc tag:c-c	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P14713	uniprotkb:P42498	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	intact:EBI-624404|ensemblplants:AT4G18130.1|uniprotkb:Q56Y99	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:phye_arath(display_long)|uniprotkb:PHYE(gene name)|psi-mi:PHYE(display_short)|uniprotkb:At4g18130(locus name)|uniprotkb:F15J5.100(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295350|imex:IM-19297-14	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|ensemblplants:AT4G18130(gene)|ensemblplants:AT4G18130.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193547.4|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 4 Figure 7|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	rogid:nEW5g0f0xNE/U0TzCJ6++md8cc43702	intact-crc:25CC609B6D1E8E87|rigid:MiKJp0o8BuO807W90sSrvRVuvLY	false	-	myc tag:c-c	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P42497	uniprotkb:P42498	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	intact:EBI-624404|ensemblplants:AT4G18130.1|uniprotkb:Q56Y99	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:phye_arath(display_long)|uniprotkb:PHYE(gene name)|psi-mi:PHYE(display_short)|uniprotkb:At4g18130(locus name)|uniprotkb:F15J5.100(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295357|imex:IM-19297-15	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|ensemblplants:AT4G18130(gene)|ensemblplants:AT4G18130.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193547.4|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 4 Figure 7|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	rogid:nEW5g0f0xNE/U0TzCJ6++md8cc43702	intact-crc:39B8E3430ACEF687|rigid:Un/f0RqUancKtlpiA/o9OG83mYI	false	-	myc tag:c-c	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P14713	uniprotkb:P14714	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	intact:EBI-624366|ensemblplants:AT5G35840.1	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:phyc_arath(display_long)|uniprotkb:PHYC(gene name)|psi-mi:PHYC(display_short)|uniprotkb:At5g35840(locus name)|uniprotkb:MIK22.15(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295365|imex:IM-19297-16	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	ensemblplants:AT5G35840(gene)|ensemblplants:AT5G35840.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_198433.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR001610(PAC motif)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 5|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	rogid:UyqyX8REK/Eoi6FWXS+MMJAhbz03702	intact-crc:41D7017F01A6EFF9|rigid:FK+QmFS0BxnI6ge01kum6PFtcio	false	myc tag:n-n	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P14713	uniprotkb:P42497	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295365|imex:IM-19297-16	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 5|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	intact-crc:41D7017F01A6EFF9|rigid:FK+QmFS0BxnI6ge01kum6PFtcio	false	myc tag:n-n	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:P14713	uniprotkb:P42498	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	intact:EBI-624404|ensemblplants:AT4G18130.1|uniprotkb:Q56Y99	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:phye_arath(display_long)|uniprotkb:PHYE(gene name)|psi-mi:PHYE(display_short)|uniprotkb:At4g18130(locus name)|uniprotkb:F15J5.100(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295365|imex:IM-19297-16	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|ensemblplants:AT4G18130(gene)|ensemblplants:AT4G18130.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193547.4|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 5|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	rogid:nEW5g0f0xNE/U0TzCJ6++md8cc43702	intact-crc:41D7017F01A6EFF9|rigid:FK+QmFS0BxnI6ge01kum6PFtcio	false	myc tag:n-n	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:O80536	uniprotkb:P42497	intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6	intact:EBI-624382|uniprotkb:O23472|ensemblplants:AT4G16250.1	psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym)	psi-mi:phyd_arath(display_long)|uniprotkb:PHYD(gene name)|psi-mi:PHYD(display_short)|uniprotkb:At4g16250(locus name)|uniprotkb:dl4165c(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295381|imex:IM-19297-17	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N	ensemblplants:AT4G16250(gene)|ensemblplants:AT4G16250.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_193360.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 10|comment:"The authors state that \"By 1 min after the R pulse, phyA, phyB, phyC, and phyD are all detected in the PIF3-m6 immunoprecipitate, whereas they are not detected in control samples from untransformed lines or from the non-R-treated samples\". Also they conclude the induction by R of co-IP of phyA, phyB, phyC, and phyD with PIF3-m6 is at least partially reversible with FR\"."|agonist:Red light treatment as described by the authors.|antagonist:At least partially Far red light treatment as described by the authors.|caution:"The authors noted that PIF3 interaction with PhyE \"data obtained up to this time for phyE interaction with PIF3-m6 in vivo are inconclusive\"."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702	rogid:I5y8QtfZ4lQHUCvWVb/LGy8tPQk3702	intact-crc:29129FBC03A68F5A|rigid:Lz1B8Tp8HisExGYsJEuzk82F+2k	false	myc tag:c-c	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:O80536	uniprotkb:P14713	intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6	intact:EBI-300727|ensemblplants:AT2G18790.1|uniprotkb:Q6S4P0	psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym)	psi-mi:phyb_arath(display_long)|uniprotkb:PHYB(gene name)|psi-mi:PHYB(display_short)|uniprotkb:HY3(gene name synonym)|uniprotkb:OOP1(gene name synonym)|uniprotkb:Protein LONG HYPOCOTYL 3(gene name synonym)|uniprotkb:Protein OUT OF PHASE 1(gene name synonym)|uniprotkb:MSF3.17(orf name)|uniprotkb:At2g18790(locus name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295381|imex:IM-19297-17	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N	go:"GO:0031347"(regulation of defense response)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0031517"(red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0043565"(sequence-specific DNA binding)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:1990841"(promoter-specific chromatin binding)|go:"GO:2000028"(regulation of photoperiodism, flowering)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|go:"GO:0018298"(protein-chromophore linkage)|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|rcsb pdb:4OUR|ensemblplants:AT2G18790(gene)|ensemblplants:AT2G18790.1(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006325"(chromatin organization)|go:"GO:0009266"(response to temperature stimulus)|go:"GO:0009409"(response to cold)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009649"(entrainment of circadian clock)|go:"GO:0009687"(abscisic acid metabolic process)|go:"GO:0009867"(jasmonic acid mediated signaling pathway)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010029"(regulation of seed germination)|go:"GO:0010148"(transpiration)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010202"(response to low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0010244"(response to low fluence blue light stimulus by blue low-fluence system)|go:"GO:0010374"(stomatal complex development)|go:"GO:0010617"(circadian regulation of calcium ion oscillation)|go:"GO:0015979"(photosynthesis)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017012"(protein-phytochromobilin linkage)|refseq:NP_179469.1|dip:DIP-31742N	-	-	-	figure legend:Figure 10|comment:"The authors state that \"By 1 min after the R pulse, phyA, phyB, phyC, and phyD are all detected in the PIF3-m6 immunoprecipitate, whereas they are not detected in control samples from untransformed lines or from the non-R-treated samples\". Also they conclude the induction by R of co-IP of phyA, phyB, phyC, and phyD with PIF3-m6 is at least partially reversible with FR\"."|agonist:Red light treatment as described by the authors.|antagonist:At least partially Far red light treatment as described by the authors.|caution:"The authors noted that PIF3 interaction with PhyE \"data obtained up to this time for phyE interaction with PIF3-m6 in vivo are inconclusive\"."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702	rogid:FdPFpvbbU95JBcLZe6pVwub8zfw3702	intact-crc:29129FBC03A68F5A|rigid:Lz1B8Tp8HisExGYsJEuzk82F+2k	false	myc tag:c-c	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:O80536	uniprotkb:P14712	intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6	intact:EBI-624446|ensemblplants:AT1G09570.5|ensemblplants:AT1G09570.6|ensemblplants:AT1G09570.1|ensemblplants:AT1G09570.4|uniprotkb:B3H6K9	psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym)	psi-mi:phya_arath(display_long)|uniprotkb:PHYA(gene name)|psi-mi:PHYA(display_short)|uniprotkb:HY8(gene name synonym)|uniprotkb:At1g09570(locus name)|uniprotkb:F14J9.23(orf name)|uniprotkb:FHY2(gene name synonym)|uniprotkb:FRE1(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED HYPOCOTYL 2(gene name synonym)|uniprotkb:Protein FAR RED ELONGATED 1(gene name synonym)|uniprotkb:Protein ELONGATED HYPOCOTYL 8(gene name synonym)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295381|imex:IM-19297-17	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N	ensemblplants:AT1G09570.4(transcript)|ensemblplants:AT1G09570.5(transcript)|ensemblplants:AT1G09570.6(transcript)|go:"GO:0000155"(phosphorelay sensor kinase activity)|go:"GO:0003729"(mRNA binding)|go:"GO:0004672"(protein kinase activity)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009630"(gravitropism)|go:"GO:0009638"(phototropism)|go:"GO:0009640"(photomorphogenesis)|go:"GO:0009883"(red or far-red light photoreceptor activity)|go:"GO:0010161"(red light signaling pathway)|go:"GO:0010201"(response to continuous far red light stimulus by the high-irradiance response system)|go:"GO:0010203"(response to very low fluence red light stimulus)|go:"GO:0010218"(response to far red light)|go:"GO:0016604"(nuclear body)|go:"GO:0016607"(nuclear speck)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0017148"(negative regulation of translation)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0031516"(far-red light photoreceptor activity)|go:"GO:0042802"(identical protein binding)|go:"GO:0042803"(protein homodimerization activity)|go:"GO:0046685"(response to arsenic-containing substance)|interpro:IPR000014(PAS)|interpro:IPR001294(Phytochrome)|interpro:IPR003018(GAF)|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003661(Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150|interpro:IPR044767|ensemblplants:AT1G09570(gene)|ensemblplants:AT1G09570.1(transcript)|refseq:NP_001117256.1|refseq:NP_172428.1|refseq:NP_001322907.1|refseq:NP_001322908.1|refseq:NP_001322909.1|dip:DIP-33461N	-	-	-	figure legend:Figure 10|comment:"The authors state that \"By 1 min after the R pulse, phyA, phyB, phyC, and phyD are all detected in the PIF3-m6 immunoprecipitate, whereas they are not detected in control samples from untransformed lines or from the non-R-treated samples\". Also they conclude the induction by R of co-IP of phyA, phyB, phyC, and phyD with PIF3-m6 is at least partially reversible with FR\"."|agonist:Red light treatment as described by the authors.|antagonist:At least partially Far red light treatment as described by the authors.|caution:"The authors noted that PIF3 interaction with PhyE \"data obtained up to this time for phyE interaction with PIF3-m6 in vivo are inconclusive\"."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702	rogid:CKVh1QT3o0sJCwH/6XMG4NRoSnE3702	intact-crc:29129FBC03A68F5A|rigid:Lz1B8Tp8HisExGYsJEuzk82F+2k	false	myc tag:c-c	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)
uniprotkb:O80536	uniprotkb:P14714	intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6	intact:EBI-624366|ensemblplants:AT5G35840.1	psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym)	psi-mi:phyc_arath(display_long)|uniprotkb:PHYC(gene name)|psi-mi:PHYC(display_short)|uniprotkb:At5g35840(locus name)|uniprotkb:MIK22.15(orf name)	psi-mi:"MI:0007"(anti tag coimmunoprecipitation)	Clack et al. (2009)	pubmed:19286967|imex:IM-19297	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-2295381|imex:IM-19297-17	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N	ensemblplants:AT5G35840(gene)|ensemblplants:AT5G35840.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009584"(detection of visible light)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009881"(photoreceptor activity)|go:"GO:0017006"(protein-tetrapyrrole linkage)|go:"GO:0018298"(protein-chromophore linkage)|go:"GO:0042803"(protein homodimerization activity)|refseq:NP_198433.1|interpro:IPR003594(ATP-binding region, ATPase-like)|interpro:IPR003018(GAF)|interpro:IPR001610(PAC motif)|interpro:IPR000014(PAS)|interpro:IPR013654(PAS fold-2)|interpro:IPR013767(PAS fold)|interpro:IPR016132(Phytochrome chromophore attachment domain)|interpro:IPR013516(Phytochrome chromophore binding site)|interpro:IPR001294(Phytochrome)|interpro:IPR012129(Phytochrome A/B/C/D/E)|interpro:IPR013515(Phytochrome, central region)|interpro:IPR005467(Signal transduction histidine kinase, core)|interpro:IPR044767|interpro:IPR029016|interpro:IPR035965|interpro:IPR036890|interpro:IPR043150	-	-	-	figure legend:Figure 10|comment:"The authors state that \"By 1 min after the R pulse, phyA, phyB, phyC, and phyD are all detected in the PIF3-m6 immunoprecipitate, whereas they are not detected in control samples from untransformed lines or from the non-R-treated samples\". Also they conclude the induction by R of co-IP of phyA, phyB, phyC, and phyD with PIF3-m6 is at least partially reversible with FR\"."|agonist:Red light treatment as described by the authors.|antagonist:At least partially Far red light treatment as described by the authors.|caution:"The authors noted that PIF3 interaction with PhyE \"data obtained up to this time for phyE interaction with PIF3-m6 in vivo are inconclusive\"."|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	-	2009/03/24	2014/10/16	rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702	rogid:UyqyX8REK/Eoi6FWXS+MMJAhbz03702	intact-crc:29129FBC03A68F5A|rigid:Lz1B8Tp8HisExGYsJEuzk82F+2k	false	myc tag:c-c	-	-	-	psi-mi:"MI:0113"(western blot)	psi-mi:"MI:0113"(western blot)