#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:P36149	uniprotkb:Q03630	intact:EBI-3567|uniprotkb:D6VXC9|ensemblfungi:YKR068C	intact:EBI-3580|uniprotkb:D6W0K6|ensemblfungi:YML077W	psi-mi:bet3_yeast(display_long)|uniprotkb:YKR068C(locus name)|uniprotkb:BET3(gene name)|psi-mi:BET3(display_short)|uniprotkb:Transport protein particle 22 kDa subunit(gene name synonym)	psi-mi:bet5_yeast(display_long)|uniprotkb:YML077W(locus name)|uniprotkb:BET5(gene name)|psi-mi:BET5(display_short)|uniprotkb:Transport protein particle 18 kDa subunit(gene name synonym)	psi-mi:"MI:0114"(x-ray crystallography)	Cai et al. (2008)	imex:IM-12058|pubmed:18585354	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1796602|wwpdb:3cue|imex:IM-12058-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_012994.1|sgd:S000001776|dip:DIP-1710N|mint:P36149|ensemblfungi:YKR068C(gene)|ensemblfungi:YKR068C_mRNA(transcript)|go:"GO:0000407"(phagophore assembly site)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0005829"(cytosol)|go:"GO:0006888"(endoplasmic reticulum to Golgi vesicle-mediated transport)|go:"GO:0006891"(intra-Golgi vesicle-mediated transport)|go:"GO:0016236"(macroautophagy)|go:"GO:0030008"(TRAPP complex)|go:"GO:0032258"(cytoplasm to vacuole transport by the Cvt pathway)|go:"GO:0033106"(cis-Golgi network membrane)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:1990070"(TRAPPI protein complex)|go:"GO:1990071"(TRAPPII protein complex)|go:"GO:1990072"(TRAPPIII protein complex)|interpro:IPR007194("Transport protein particle (TRAPP) component, Bet3")|interpro:IPR016721(TRAPP I complex, Bet3)|interpro:IPR024096|rcsb pdb:3CUE|rcsb pdb:7KMT|reactome:R-SCE-204005|reactome:R-SCE-8876198	refseq:NP_013634.1|sgd:S000004542|reactome:R-SCE-204005|reactome:R-SCE-6798695|dip:DIP-4528N|reactome:R-SCE-8876198|ensemblfungi:YML077W(gene)|ensemblfungi:YML077W_mRNA(transcript)|go:"GO:0000407"(phagophore assembly site)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0006888"(endoplasmic reticulum to Golgi vesicle-mediated transport)|go:"GO:0006914"(autophagy)|go:"GO:0030008"(TRAPP complex)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:1990070"(TRAPPI protein complex)|go:"GO:1990071"(TRAPPII protein complex)|go:"GO:1990072"(TRAPPIII protein complex)|interpro:IPR007233(Sybindin-like protein)|interpro:IPR011012(Longin-like)|rcsb pdb:3CUE|rcsb pdb:7KMT	-	crc64:C802D8A3563DE82B	crc64:4821217270F516E9	figure legend:1 A, Table S1|3d-resolution:3.7 A|3d-r-factors:"Rwork/Rfree (%) = 26.49/29.92"|complex-properties:TRAPPI subassembly is about 135 A long and 30-75 A in diameter.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2008/07/24	2014/10/16	rogid:XN0vyDhpSkOFxu+sgthTqABoSxM559292	rogid:bWKvxbORQE3Hl5BqHfS4mbRozek559292	intact-crc:B269545494328A4C|rigid:QRc5qM7Uz5EMDaBfohn540gXxBY	false	-	-	2	1	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P36149	uniprotkb:Q03784	intact:EBI-3567|uniprotkb:D6VXC9|ensemblfungi:YKR068C	intact:EBI-19474|uniprotkb:D6VSM6|ensemblfungi:YDR246W	psi-mi:bet3_yeast(display_long)|uniprotkb:YKR068C(locus name)|uniprotkb:BET3(gene name)|psi-mi:BET3(display_short)|uniprotkb:Transport protein particle 22 kDa subunit(gene name synonym)	psi-mi:trs23_yeast(display_long)|uniprotkb:TRS23(gene name)|psi-mi:TRS23(display_short)|uniprotkb:YDR246W(locus name)|uniprotkb:YD8419.13(orf name)|uniprotkb:Transport protein particle 23 kDa subunit(gene name synonym)	psi-mi:"MI:0114"(x-ray crystallography)	Cai et al. (2008)	imex:IM-12058|pubmed:18585354	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1796602|wwpdb:3cue|imex:IM-12058-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_012994.1|sgd:S000001776|dip:DIP-1710N|mint:P36149|ensemblfungi:YKR068C(gene)|ensemblfungi:YKR068C_mRNA(transcript)|go:"GO:0000407"(phagophore assembly site)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0005829"(cytosol)|go:"GO:0006888"(endoplasmic reticulum to Golgi vesicle-mediated transport)|go:"GO:0006891"(intra-Golgi vesicle-mediated transport)|go:"GO:0016236"(macroautophagy)|go:"GO:0030008"(TRAPP complex)|go:"GO:0032258"(cytoplasm to vacuole transport by the Cvt pathway)|go:"GO:0033106"(cis-Golgi network membrane)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:1990070"(TRAPPI protein complex)|go:"GO:1990071"(TRAPPII protein complex)|go:"GO:1990072"(TRAPPIII protein complex)|interpro:IPR007194("Transport protein particle (TRAPP) component, Bet3")|interpro:IPR016721(TRAPP I complex, Bet3)|interpro:IPR024096|rcsb pdb:3CUE|rcsb pdb:7KMT|reactome:R-SCE-204005|reactome:R-SCE-8876198	sgd:S000002654|ensemblfungi:YDR246W(gene)|ensemblfungi:YDR246W_mRNA(transcript)|go:"GO:0000407"(phagophore assembly site)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0006888"(endoplasmic reticulum to Golgi vesicle-mediated transport)|go:"GO:0006914"(autophagy)|go:"GO:0030008"(TRAPP complex)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:0051276"(chromosome organization)|go:"GO:1990070"(TRAPPI protein complex)|go:"GO:1990071"(TRAPPII protein complex)|go:"GO:1990072"(TRAPPIII protein complex)|interpro:IPR007233(Sybindin-like protein)|interpro:IPR011012(Longin-like)|rcsb pdb:3CUE|rcsb pdb:7KMT|reactome:R-SCE-204005|reactome:R-SCE-8876198|refseq:NP_010532.3|dip:DIP-5813N|mint:Q03784	-	crc64:C802D8A3563DE82B	crc64:8B32B1D5FE3846ED	figure legend:1 A, Table S1|3d-resolution:3.7 A|3d-r-factors:"Rwork/Rfree (%) = 26.49/29.92"|complex-properties:TRAPPI subassembly is about 135 A long and 30-75 A in diameter.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2008/07/24	2014/10/16	rogid:XN0vyDhpSkOFxu+sgthTqABoSxM559292	rogid:YjMZl4mUzPhM4t2K6pBhXHiLpGY559292	intact-crc:B269545494328A4C|rigid:QRc5qM7Uz5EMDaBfohn540gXxBY	false	-	-	2	1	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P36149	uniprotkb:Q03337	intact:EBI-3567|uniprotkb:D6VXC9|ensemblfungi:YKR068C	intact:EBI-38770|uniprotkb:D6VT96|ensemblfungi:YDR472W	psi-mi:bet3_yeast(display_long)|uniprotkb:YKR068C(locus name)|uniprotkb:BET3(gene name)|psi-mi:BET3(display_short)|uniprotkb:Transport protein particle 22 kDa subunit(gene name synonym)	psi-mi:trs31_yeast(display_long)|uniprotkb:TRS31(gene name)|psi-mi:TRS31(display_short)|uniprotkb:YDR472W(locus name)|uniprotkb:Transport protein particle 31 kDa subunit(gene name synonym)	psi-mi:"MI:0114"(x-ray crystallography)	Cai et al. (2008)	imex:IM-12058|pubmed:18585354	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1796602|wwpdb:3cue|imex:IM-12058-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_012994.1|sgd:S000001776|dip:DIP-1710N|mint:P36149|ensemblfungi:YKR068C(gene)|ensemblfungi:YKR068C_mRNA(transcript)|go:"GO:0000407"(phagophore assembly site)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0005829"(cytosol)|go:"GO:0006888"(endoplasmic reticulum to Golgi vesicle-mediated transport)|go:"GO:0006891"(intra-Golgi vesicle-mediated transport)|go:"GO:0016236"(macroautophagy)|go:"GO:0030008"(TRAPP complex)|go:"GO:0032258"(cytoplasm to vacuole transport by the Cvt pathway)|go:"GO:0033106"(cis-Golgi network membrane)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:1990070"(TRAPPI protein complex)|go:"GO:1990071"(TRAPPII protein complex)|go:"GO:1990072"(TRAPPIII protein complex)|interpro:IPR007194("Transport protein particle (TRAPP) component, Bet3")|interpro:IPR016721(TRAPP I complex, Bet3)|interpro:IPR024096|rcsb pdb:3CUE|rcsb pdb:7KMT|reactome:R-SCE-204005|reactome:R-SCE-8876198	sgd:S000002880|refseq:NP_010760.3|mint:Q03337|dip:DIP-1709N|ensemblfungi:YDR472W(gene)|ensemblfungi:YDR472W_mRNA(transcript)|go:"GO:0000407"(phagophore assembly site)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0005829"(cytosol)|go:"GO:0006888"(endoplasmic reticulum to Golgi vesicle-mediated transport)|go:"GO:0006914"(autophagy)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:1990070"(TRAPPI protein complex)|go:"GO:1990071"(TRAPPII protein complex)|go:"GO:1990072"(TRAPPIII protein complex)|interpro:IPR007194("Transport protein particle (TRAPP) component, Bet3")|interpro:IPR016696(TRAPP I complex, Trs31)|interpro:IPR024096|rcsb pdb:3CUE|rcsb pdb:7KMT|reactome:R-SCE-204005|reactome:R-SCE-8876198	-	crc64:C802D8A3563DE82B	crc64:857BBA3E03423D42	figure legend:1 A, Table S1|3d-resolution:3.7 A|3d-r-factors:"Rwork/Rfree (%) = 26.49/29.92"|complex-properties:TRAPPI subassembly is about 135 A long and 30-75 A in diameter.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2008/07/24	2014/10/16	rogid:XN0vyDhpSkOFxu+sgthTqABoSxM559292	rogid:qHZvErkTCTlqRCA/CoT13382NRI559292	intact-crc:B269545494328A4C|rigid:QRc5qM7Uz5EMDaBfohn540gXxBY	false	-	-	2	1	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:P36149	uniprotkb:P01123	intact:EBI-3567|uniprotkb:D6VXC9|ensemblfungi:YKR068C	intact:EBI-29496|uniprotkb:D6VTJ2|ensemblfungi:YFL038C	psi-mi:bet3_yeast(display_long)|uniprotkb:YKR068C(locus name)|uniprotkb:BET3(gene name)|psi-mi:BET3(display_short)|uniprotkb:Transport protein particle 22 kDa subunit(gene name synonym)	psi-mi:ypt1_yeast(display_long)|uniprotkb:YFL038C(locus name)|uniprotkb:YPT1(gene name)|psi-mi:YPT1(display_short)|uniprotkb:YP2(gene name synonym)|uniprotkb:Rab GTPase YPT1(gene name synonym)|uniprotkb:Transport GTPase YPT1(gene name synonym)|uniprotkb:Protein YP2(gene name synonym)	psi-mi:"MI:0114"(x-ray crystallography)	Cai et al. (2008)	imex:IM-12058|pubmed:18585354	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1796602|wwpdb:3cue|imex:IM-12058-1	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0497"(neutral component)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_012994.1|sgd:S000001776|dip:DIP-1710N|mint:P36149|ensemblfungi:YKR068C(gene)|ensemblfungi:YKR068C_mRNA(transcript)|go:"GO:0000407"(phagophore assembly site)|go:"GO:0005783"(endoplasmic reticulum)|go:"GO:0005829"(cytosol)|go:"GO:0006888"(endoplasmic reticulum to Golgi vesicle-mediated transport)|go:"GO:0006891"(intra-Golgi vesicle-mediated transport)|go:"GO:0016236"(macroautophagy)|go:"GO:0030008"(TRAPP complex)|go:"GO:0032258"(cytoplasm to vacuole transport by the Cvt pathway)|go:"GO:0033106"(cis-Golgi network membrane)|go:"GO:0050790"(regulation of catalytic activity)|go:"GO:1990070"(TRAPPI protein complex)|go:"GO:1990071"(TRAPPII protein complex)|go:"GO:1990072"(TRAPPIII protein complex)|interpro:IPR007194("Transport protein particle (TRAPP) component, Bet3")|interpro:IPR016721(TRAPP I complex, Bet3)|interpro:IPR024096|rcsb pdb:3CUE|rcsb pdb:7KMT|reactome:R-SCE-204005|reactome:R-SCE-8876198	refseq:NP_116615.1|sgd:S000001856|dip:DIP-2019N|mint:P01123|ensemblfungi:YFL038C(gene)|ensemblfungi:YFL038C_mRNA(transcript)|go:"GO:0000045"(autophagosome assembly)|go:"GO:0000139"(Golgi membrane)|go:"GO:0000149"(SNARE binding)|go:"GO:0000407"(phagophore assembly site)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005739"(mitochondrion)|go:"GO:0005789"(endoplasmic reticulum membrane)|go:"GO:0005795"(Golgi stack)|go:"GO:0005801"(cis-Golgi network)|go:"GO:0005829"(cytosol)|go:"GO:0006886"(intracellular protein transport)|go:"GO:0006888"(endoplasmic reticulum to Golgi vesicle-mediated transport)|go:"GO:0006890"(retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum)|go:"GO:0012505"(endomembrane system)|go:"GO:0016236"(macroautophagy)|go:"GO:0031410"(cytoplasmic vesicle)|go:"GO:0032258"(cytoplasm to vacuole transport by the Cvt pathway)|go:"GO:0032456"(endocytic recycling)|go:"GO:0034045"(phagophore assembly site membrane)|go:"GO:0034497"(protein localization to phagophore assembly site)|go:"GO:0034498"(early endosome to Golgi transport)|go:"GO:0035493"(SNARE complex assembly)|go:"GO:0035494"(SNARE complex disassembly)|go:"GO:0043549"(regulation of kinase activity)|go:"GO:0048194"(Golgi vesicle budding)|go:"GO:0048211"(Golgi vesicle docking)|go:"GO:0061709"(reticulophagy)|go:"GO:0090114"(COPII-coated vesicle budding)|go:"GO:1900101"(regulation of endoplasmic reticulum unfolded protein response)|go:"GO:1990261"(pre-mRNA catabolic process)|interpro:IPR001806(Ras GTPase)|interpro:IPR005225(Small GTP-binding protein)|interpro:IPR027417|rcsb pdb:1UKV|rcsb pdb:1YZN|rcsb pdb:2BCG|rcsb pdb:3CUE|rcsb pdb:7KMT|reactome:R-SCE-162658|reactome:R-SCE-204005|reactome:R-SCE-6807878|reactome:R-SCE-6811434|reactome:R-SCE-8873719|reactome:R-SCE-8876198	-	crc64:C802D8A3563DE82B	crc64:F8C704F6BF2D227B	figure legend:1 A, Table S1|3d-resolution:3.7 A|3d-r-factors:"Rwork/Rfree (%) = 26.49/29.92"|complex-properties:TRAPPI subassembly is about 135 A long and 30-75 A in diameter.|full coverage:Only protein-protein interactions|curation depth:imex curation	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2008/07/24	2014/10/16	rogid:XN0vyDhpSkOFxu+sgthTqABoSxM559292	rogid:IMz/iERXs1zvX+wgJ9x7Uk0ovQ8559292	intact-crc:B269545494328A4C|rigid:QRc5qM7Uz5EMDaBfohn540gXxBY	false	-	sufficient binding region:1-180	2	1	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)