#ID(s) interactor A ID(s) interactor B Alt. ID(s) interactor A Alt. ID(s) interactor B Alias(es) interactor A Alias(es) interactor B Interaction detection method(s) Publication 1st author(s) Publication Identifier(s) Taxid interactor A Taxid interactor B Interaction type(s) Source database(s) Interaction identifier(s) Confidence value(s) Expansion method(s) Biological role(s) interactor A Biological role(s) interactor B Experimental role(s) interactor A Experimental role(s) interactor B Type(s) interactor A Type(s) interactor B Xref(s) interactor A Xref(s) interactor B Interaction Xref(s) Annotation(s) interactor A Annotation(s) interactor B Interaction annotation(s) Host organism(s) Interaction parameter(s) Creation date Update date Checksum(s) interactor A Checksum(s) interactor B Interaction Checksum(s) Negative Feature(s) interactor A Feature(s) interactor B Stoichiometry(s) interactor A Stoichiometry(s) interactor B Identification method participant A Identification method participant B uniprotkb:Q9LKF9 uniprotkb:Q9FGR0 intact:EBI-1775444|uniprotkb:Q9FF92|ensemblplants:AT5G23880.1 intact:EBI-1775436|uniprotkb:Q8H1T4|intact:EBI-1790868|ensemblplants:AT5G51660.1 psi-mi:cpsf2_arath(display_long)|uniprotkb:CPSF100(gene name)|psi-mi:CPSF100(display_short)|uniprotkb:MRO11.8(orf name)|uniprotkb:At5g23880(locus name)|uniprotkb:Cleavage and polyadenylation specificity factor 100 kDa subunit(gene name synonym)|uniprotkb:Protein EMBRYO DEFECTIVE 1265(gene name synonym)|uniprotkb:EMB1265(gene name synonym)|uniprotkb:ESP5(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 5(gene name synonym) psi-mi:cpsf1_arath(display_long)|uniprotkb:CPSF160(gene name)|psi-mi:CPSF160(display_short)|uniprotkb:Cleavage and polyadenylation specificity factor 160 kDa subunit(gene name synonym)|uniprotkb:K17N15.21(orf name)|uniprotkb:At5g51660(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775452|imex:IM-19266-1 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_197776.1|dip:DIP-40385N|ensemblplants:AT5G23880(gene)|ensemblplants:AT5G23880.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006379"(mRNA cleavage)|go:"GO:0006398"(mRNA 3'-end processing by stem-loop binding and cleavage)|go:"GO:0009506"(plasmodesma)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation)|interpro:IPR001279(Beta-lactamase-like)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|interpro:IPR022712|interpro:IPR025069|interpro:IPR027075|interpro:IPR035639|interpro:IPR036866 refseq:NP_199979.2|dip:DIP-40386N|ensemblplants:AT5G51660(gene)|ensemblplants:AT5G51660.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006378"(mRNA polyadenylation)|interpro:IPR004871(Cleavage and polyadenylation specificity factor, A subunit, C-terminal)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR018846 - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:QloniYRPNp8HPM1a5utoeXWzsB83702 rogid:U6haGDaYdKOlEOwdc1Rn92pKQ3A3702 intact-crc:0421EC67921FC7EA|rigid:KNTD8mv9OgpuzBi5w08NTgxzbG0 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:Q9FGR0 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-1775436|uniprotkb:Q8H1T4|intact:EBI-1790868|ensemblplants:AT5G51660.1 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:cpsf1_arath(display_long)|uniprotkb:CPSF160(gene name)|psi-mi:CPSF160(display_short)|uniprotkb:Cleavage and polyadenylation specificity factor 160 kDa subunit(gene name synonym)|uniprotkb:K17N15.21(orf name)|uniprotkb:At5g51660(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775456|imex:IM-19266-2 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 refseq:NP_199979.2|dip:DIP-40386N|ensemblplants:AT5G51660(gene)|ensemblplants:AT5G51660.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005829"(cytosol)|go:"GO:0006378"(mRNA polyadenylation)|interpro:IPR004871(Cleavage and polyadenylation specificity factor, A subunit, C-terminal)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR018846 - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:U6haGDaYdKOlEOwdc1Rn92pKQ3A3702 intact-crc:ADFAEFD73B9C8FE8|rigid:mgZPbKqXB57ouZszUdvagH/3zXw false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:Q9LKF9 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-1775444|uniprotkb:Q9FF92|ensemblplants:AT5G23880.1 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:cpsf2_arath(display_long)|uniprotkb:CPSF100(gene name)|psi-mi:CPSF100(display_short)|uniprotkb:MRO11.8(orf name)|uniprotkb:At5g23880(locus name)|uniprotkb:Cleavage and polyadenylation specificity factor 100 kDa subunit(gene name synonym)|uniprotkb:Protein EMBRYO DEFECTIVE 1265(gene name synonym)|uniprotkb:EMB1265(gene name synonym)|uniprotkb:ESP5(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 5(gene name synonym) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775460|imex:IM-19266-3 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 refseq:NP_197776.1|dip:DIP-40385N|ensemblplants:AT5G23880(gene)|ensemblplants:AT5G23880.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006379"(mRNA cleavage)|go:"GO:0006398"(mRNA 3'-end processing by stem-loop binding and cleavage)|go:"GO:0009506"(plasmodesma)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation)|interpro:IPR001279(Beta-lactamase-like)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|interpro:IPR022712|interpro:IPR025069|interpro:IPR027075|interpro:IPR035639|interpro:IPR036866 - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:QloniYRPNp8HPM1a5utoeXWzsB83702 intact-crc:927DD6C68AC1D12B|rigid:A49DI+Jt1b0Jg7R+L1IpcLxpGvI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9LKF9 uniprotkb:Q9C952 intact:EBI-1775444|uniprotkb:Q9FF92|ensemblplants:AT5G23880.1 intact:EBI-1775464|intact:EBI-1790795|uniprotkb:Q8VY18|ensemblplants:AT1G61010.1|ensemblplants:AT1G61010.2|ensemblplants:AT1G61010.3|ensemblplants:AT1G61010.4|ensemblplants:AT1G61010.5 psi-mi:cpsf2_arath(display_long)|uniprotkb:CPSF100(gene name)|psi-mi:CPSF100(display_short)|uniprotkb:MRO11.8(orf name)|uniprotkb:At5g23880(locus name)|uniprotkb:Cleavage and polyadenylation specificity factor 100 kDa subunit(gene name synonym)|uniprotkb:Protein EMBRYO DEFECTIVE 1265(gene name synonym)|uniprotkb:EMB1265(gene name synonym)|uniprotkb:ESP5(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 5(gene name synonym) psi-mi:cpsf3_arath(display_long)|uniprotkb:T7P1.15(orf name)|uniprotkb:At1g61010(locus name)|uniprotkb:CPSF73-I(gene name)|psi-mi:CPSF73-I(display_short)|uniprotkb:Cleavage and polyadenylation specificity factor 73 kDa subunit I(gene name synonym) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775473|imex:IM-19266-4 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_197776.1|dip:DIP-40385N|ensemblplants:AT5G23880(gene)|ensemblplants:AT5G23880.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006379"(mRNA cleavage)|go:"GO:0006398"(mRNA 3'-end processing by stem-loop binding and cleavage)|go:"GO:0009506"(plasmodesma)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation)|interpro:IPR001279(Beta-lactamase-like)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|interpro:IPR022712|interpro:IPR025069|interpro:IPR027075|interpro:IPR035639|interpro:IPR036866 refseq:NP_001031215.1|refseq:NP_176297.1|refseq:NP_849835.1|refseq:NP_001319278.1|refseq:NP_001321253.1|dip:DIP-40388N|ensemblplants:AT1G61010(gene)|ensemblplants:AT1G61010.1(transcript)|ensemblplants:AT1G61010.2(transcript)|ensemblplants:AT1G61010.3(transcript)|ensemblplants:AT1G61010.4(transcript)|ensemblplants:AT1G61010.5(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005634"(nucleus)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006398"(mRNA 3'-end processing by stem-loop binding and cleavage)|go:"GO:0008409"(5'-3' exonuclease activity)|go:"GO:0016180"(snRNA processing)|interpro:IPR001279(Beta-lactamase-like)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|interpro:IPR021718|interpro:IPR022712|interpro:IPR036866 - - caution:This sequence has been withdrawn from Uniprot.|crc64:D225E47A675ACB1C figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:QloniYRPNp8HPM1a5utoeXWzsB83702 rogid:BnmO6W86a6UYdnfukDOiSDmSszM3702 intact-crc:B9BF033AEFA855B6|rigid:xu2FzpgpVQoxLw1sIsaB/hIZcjU false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9LKF9 uniprotkb:Q8GUU3 intact:EBI-1775444|uniprotkb:Q9FF92|ensemblplants:AT5G23880.1 intact:EBI-1775477|uniprotkb:Q9ZUA1|intact:EBI-1790820|uniprotkb:Q56XW2|ensemblplants:AT2G01730.1 psi-mi:cpsf2_arath(display_long)|uniprotkb:CPSF100(gene name)|psi-mi:CPSF100(display_short)|uniprotkb:MRO11.8(orf name)|uniprotkb:At5g23880(locus name)|uniprotkb:Cleavage and polyadenylation specificity factor 100 kDa subunit(gene name synonym)|uniprotkb:Protein EMBRYO DEFECTIVE 1265(gene name synonym)|uniprotkb:EMB1265(gene name synonym)|uniprotkb:ESP5(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 5(gene name synonym) psi-mi:cps3b_arath(display_long)|uniprotkb:At2g01730(locus name)|uniprotkb:CPSF73-II(gene name)|psi-mi:CPSF73-II(display_short)|uniprotkb:EDA26(gene name synonym)|uniprotkb:FEG(gene name synonym)|uniprotkb:Cleavage and polyadenylation specificity factor 73 kDa subunit II(gene name synonym)|uniprotkb:Protein EMBRYO SAC DEVELOPMENT ARREST 26(gene name synonym)|uniprotkb:T8O11.10(orf name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775484|imex:IM-19266-5 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_197776.1|dip:DIP-40385N|ensemblplants:AT5G23880(gene)|ensemblplants:AT5G23880.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006379"(mRNA cleavage)|go:"GO:0006398"(mRNA 3'-end processing by stem-loop binding and cleavage)|go:"GO:0009506"(plasmodesma)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation)|interpro:IPR001279(Beta-lactamase-like)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|interpro:IPR022712|interpro:IPR025069|interpro:IPR027075|interpro:IPR035639|interpro:IPR036866 interpro:IPR001279(Beta-lactamase-like)|interpro:IPR022712|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|refseq:NP_178282.2|interpro:IPR036866|interpro:IPR041897|ensemblplants:AT2G01730(gene)|ensemblplants:AT2G01730.1(transcript)|go:"GO:0004518"(nuclease activity)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0010197"(polar nucleus fusion)|go:"GO:0016180"(snRNA processing) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:QloniYRPNp8HPM1a5utoeXWzsB83702 rogid:8EdJ1EEKsghbcEaRptHWKUcT0y03702 intact-crc:EA4524CAED4E9544|rigid:P6hDCsX/MtDWleDWCX/xrbaqcDg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9LKF9 uniprotkb:Q8L4J2 intact:EBI-1775444|uniprotkb:Q9FF92|ensemblplants:AT5G23880.1 intact:EBI-1775488|uniprotkb:F4K0J5|uniprotkb:Q9FME6|ensemblplants:AT5G60940.1 psi-mi:cpsf2_arath(display_long)|uniprotkb:CPSF100(gene name)|psi-mi:CPSF100(display_short)|uniprotkb:MRO11.8(orf name)|uniprotkb:At5g23880(locus name)|uniprotkb:Cleavage and polyadenylation specificity factor 100 kDa subunit(gene name synonym)|uniprotkb:Protein EMBRYO DEFECTIVE 1265(gene name synonym)|uniprotkb:EMB1265(gene name synonym)|uniprotkb:ESP5(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 5(gene name synonym) psi-mi:ctf50_arath(display_long)|uniprotkb:CSTF50(gene name)|psi-mi:CSTF50(display_short)|uniprotkb:CF-1 50 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 50 kDa subunit(gene name synonym)|uniprotkb:MSL3.60(orf name)|uniprotkb:At5g60940(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775494|imex:IM-19266-6 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_197776.1|dip:DIP-40385N|ensemblplants:AT5G23880(gene)|ensemblplants:AT5G23880.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006379"(mRNA cleavage)|go:"GO:0006398"(mRNA 3'-end processing by stem-loop binding and cleavage)|go:"GO:0009506"(plasmodesma)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation)|interpro:IPR001279(Beta-lactamase-like)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|interpro:IPR022712|interpro:IPR025069|interpro:IPR027075|interpro:IPR035639|interpro:IPR036866 refseq:NP_200902.1|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR001680(WD40 repeat)|interpro:IPR019775|interpro:IPR044633|refseq:NP_974972.1|interpro:IPR036322|ensemblplants:AT5G60940(gene)|ensemblplants:AT5G60940.1(transcript)|go:"GO:0005848"(mRNA cleavage stimulating factor complex)|go:"GO:0031124"(mRNA 3'-end processing) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:QloniYRPNp8HPM1a5utoeXWzsB83702 rogid:aUGA5TcctOHHcuybbytA8yXw9/M3702 intact-crc:EFCCC7B003804916|rigid:7BAQCNyOk8Sw33jc3hm++OFPNb0 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9LKF9 uniprotkb:Q6NLV4 intact:EBI-1775444|uniprotkb:Q9FF92|ensemblplants:AT5G23880.1 intact:EBI-1632908|uniprotkb:Q9FY53|ensemblplants:AT5G13480.1 psi-mi:cpsf2_arath(display_long)|uniprotkb:CPSF100(gene name)|psi-mi:CPSF100(display_short)|uniprotkb:MRO11.8(orf name)|uniprotkb:At5g23880(locus name)|uniprotkb:Cleavage and polyadenylation specificity factor 100 kDa subunit(gene name synonym)|uniprotkb:Protein EMBRYO DEFECTIVE 1265(gene name synonym)|uniprotkb:EMB1265(gene name synonym)|uniprotkb:ESP5(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 5(gene name synonym) psi-mi:fy_arath(display_long)|uniprotkb:FY(gene name)|psi-mi:FY(display_short)|uniprotkb:T6I14.10(orf name)|uniprotkb:At5g13480(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775501|imex:IM-19266-7 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_197776.1|dip:DIP-40385N|ensemblplants:AT5G23880(gene)|ensemblplants:AT5G23880.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006379"(mRNA cleavage)|go:"GO:0006398"(mRNA 3'-end processing by stem-loop binding and cleavage)|go:"GO:0009506"(plasmodesma)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation)|interpro:IPR001279(Beta-lactamase-like)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|interpro:IPR022712|interpro:IPR025069|interpro:IPR027075|interpro:IPR035639|interpro:IPR036866 dip:DIP-40405N|refseq:NP_196852.3|ensemblplants:AT5G13480(gene)|ensemblplants:AT5G13480.1(transcript)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0009908"(flower development)|go:"GO:0030154"(cell differentiation)|interpro:IPR001680(WD40 repeat)|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR019775|interpro:IPR020472|interpro:IPR036322 - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:QloniYRPNp8HPM1a5utoeXWzsB83702 rogid:C2M6JxHZ0ajbrY2ceVFx8BzxGLo3702 intact-crc:D515479639EFCB86|rigid:WMPVvMuZGiCBhAtVH1Gtu3+lg3w false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9LKF9 uniprotkb:O82312 intact:EBI-1775444|uniprotkb:Q9FF92|ensemblplants:AT5G23880.1 intact:EBI-1775513|uniprotkb:Q94BP6|uniprotkb:Q9LKX0|uniprotkb:F4ISP7|uniprotkb:F4ISP8|uniprotkb:F4ISP9|ensemblplants:AT2G25850.2 psi-mi:cpsf2_arath(display_long)|uniprotkb:CPSF100(gene name)|psi-mi:CPSF100(display_short)|uniprotkb:MRO11.8(orf name)|uniprotkb:At5g23880(locus name)|uniprotkb:Cleavage and polyadenylation specificity factor 100 kDa subunit(gene name synonym)|uniprotkb:Protein EMBRYO DEFECTIVE 1265(gene name synonym)|uniprotkb:EMB1265(gene name synonym)|uniprotkb:ESP5(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 5(gene name synonym) psi-mi:paps2_arath(display_long)|uniprotkb:PAPS2(gene name)|psi-mi:PAPS2(display_short)|uniprotkb:Polynucleotide adenylyltransferase 2(gene name synonym)|uniprotkb:F17H15.12(orf name)|uniprotkb:At2g25850(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775528|imex:IM-19266-8 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_197776.1|dip:DIP-40385N|ensemblplants:AT5G23880(gene)|ensemblplants:AT5G23880.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006379"(mRNA cleavage)|go:"GO:0006398"(mRNA 3'-end processing by stem-loop binding and cleavage)|go:"GO:0009506"(plasmodesma)|go:"GO:0035194"(post-transcriptional gene silencing by RNA)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation)|interpro:IPR001279(Beta-lactamase-like)|interpro:IPR011108(RNA-metabolising metallo-beta-lactamase)|interpro:IPR022712|interpro:IPR025069|interpro:IPR027075|interpro:IPR035639|interpro:IPR036866 refseq:NP_565611.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|refseq:NP_001031417.1|refseq:NP_001189603.1|refseq:NP_850071.1|interpro:IPR043519|ensemblplants:AT2G25850(gene)|ensemblplants:AT2G25850.2(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:QloniYRPNp8HPM1a5utoeXWzsB83702 rogid:8FgUxpQLSYpmk+eqrQw/NY0rNHY3702 intact-crc:006321FA6E41EDCE|rigid:Yla0Yg7RQ/SrkTZzOon1vD8YlHU false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:A9LNK9 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775538|imex:IM-19266-9 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 intact-crc:EF48E7B81D77F912|rigid:ToWxY/a90v+ZgCPDn7TZwAoRIr4 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GUP1 uniprotkb:A9LNK9 intact:EBI-1775543|uniprotkb:Q8LKG5|uniprotkb:Q9FZ58|intact:EBI-7841938|intact:MINT-7712539|ensemblplants:AT1G17760.1 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 psi-mi:ctf77_arath(display_long)|uniprotkb:CSTF77(gene name)|psi-mi:CSTF77(display_short)|uniprotkb:CF-1 77 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 77 kDa subunit(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 2(gene name synonym)|uniprotkb:F11A6.10(orf name)|uniprotkb:At1g17760(locus name) psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775553|imex:IM-19266-10 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_173218.2|interpro:IPR003107(RNA-processing protein, HAT helix)|interpro:IPR008847(Suppressor of forked)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|ensemblplants:AT1G17760(gene)|ensemblplants:AT1G17760.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0060968"(obsolete regulation of gene silencing) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:kOSGEvWI/AZ6hJEfq7fLnXj5Rl43702 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 intact-crc:368E19B03CD678E4|rigid:Nt+4aZLPmcC5OmR3knHmU2A30q8 false sufficient binding region:406-734 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:Q8L4J2 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-1775488|uniprotkb:F4K0J5|uniprotkb:Q9FME6|ensemblplants:AT5G60940.1 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:ctf50_arath(display_long)|uniprotkb:CSTF50(gene name)|psi-mi:CSTF50(display_short)|uniprotkb:CF-1 50 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 50 kDa subunit(gene name synonym)|uniprotkb:MSL3.60(orf name)|uniprotkb:At5g60940(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775559|imex:IM-19266-11 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 refseq:NP_200902.1|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR001680(WD40 repeat)|interpro:IPR019775|interpro:IPR044633|refseq:NP_974972.1|interpro:IPR036322|ensemblplants:AT5G60940(gene)|ensemblplants:AT5G60940.1(transcript)|go:"GO:0005848"(mRNA cleavage stimulating factor complex)|go:"GO:0031124"(mRNA 3'-end processing) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:aUGA5TcctOHHcuybbytA8yXw9/M3702 intact-crc:4617C400AA030114|rigid:P7dCo5m0Vacqb2YNtH+hazN+47g false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O82312 uniprotkb:A9LNK9 intact:EBI-1775513|uniprotkb:Q94BP6|uniprotkb:Q9LKX0|uniprotkb:F4ISP7|uniprotkb:F4ISP8|uniprotkb:F4ISP9|ensemblplants:AT2G25850.2 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 psi-mi:paps2_arath(display_long)|uniprotkb:PAPS2(gene name)|psi-mi:PAPS2(display_short)|uniprotkb:Polynucleotide adenylyltransferase 2(gene name synonym)|uniprotkb:F17H15.12(orf name)|uniprotkb:At2g25850(locus name) psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775563|imex:IM-19266-12 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_565611.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|refseq:NP_001031417.1|refseq:NP_001189603.1|refseq:NP_850071.1|interpro:IPR043519|ensemblplants:AT2G25850(gene)|ensemblplants:AT2G25850.2(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:8FgUxpQLSYpmk+eqrQw/NY0rNHY3702 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 intact-crc:A9B8224AC7C2A5CC|rigid:mz+E/A9p32uCg0+E7R0RCOgbq/E false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q56XM9 uniprotkb:A9LNK9 intact:EBI-1775567|uniprotkb:Q7XJ92|uniprotkb:Q9C8Z7|ensemblplants:AT3G06560.1 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 psi-mi:paps3_arath(display_long)|uniprotkb:PAPS3(gene name)|psi-mi:PAPS3(display_short)|uniprotkb:Polynucleotide adenylyltransferase 3(gene name synonym)|uniprotkb:F5E6.11(orf name)|uniprotkb:At3g06560(locus name) psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775579|imex:IM-19266-13 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_187308.3|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR014492("Poly(A) polymerase")|interpro:IPR043519|ensemblplants:AT3G06560(gene)|ensemblplants:AT3G06560.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:FETba7rgLKDjOmVuQtZWKX+Ch3A3702 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 intact-crc:BB93FF928C3F9C01|rigid:3iNuLut65zn1drfN16mHtbedBEc false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:F4JC20 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-1775583|uniprotkb:Q9C834|uniprotkb:Q9C904|ensemblplants:AT3G66652.1|ensemblplants:AT3G66652.2|ensemblplants:AT3G66652.3 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:fips3_arath(display_long)|uniprotkb:FIPS3(gene name)|psi-mi:FIPS3(display_short)|uniprotkb:"Factor interacting with poly(A) polymerase-like 3"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [III](gene name synonym)|uniprotkb:F5E6.1(orf name)|uniprotkb:T8E24.6(orf name)|uniprotkb:At3g66652(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775589|imex:IM-19266-14 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 interpro:IPR007854(Fip1)|refseq:NP_001189830.1|refseq:NP_187318.2|refseq:NP_001326511.1|ensemblplants:AT3G66652(gene)|ensemblplants:AT3G66652.1(transcript)|ensemblplants:AT3G66652.2(transcript)|ensemblplants:AT3G66652.3(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:6LzMr5nV+7sC6bPYMBZ5Gd2NnvI3702 intact-crc:68696C93D9819190|rigid:zPgFcJw/EfTS0vYo3dC+lhwPSQc false - sufficient binding region:1-644 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:F4KDH9 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775595|imex:IM-19266-15 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 intact-crc:B5D0F807462AD6FF|rigid:0Xkyo417RxvuemOOsfqGnvqskLA false - sufficient binding region:1-137 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:Q8GXS3 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-1775616|intact:EBI-2130705|uniprotkb:O65606|uniprotkb:Q570Y1|uniprotkb:Q9M0K5|ensemblplants:AT4G25550.1 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:cfis2_arath(display_long)|uniprotkb:CFIS2(gene name)|psi-mi:CFIS2(display_short)|uniprotkb:M7J2.80(orf name)|uniprotkb:At4g25550(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775623|imex:IM-19266-16 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 refseq:NP_194285.2|interpro:IPR016706(Cleavage and polyadenylation specificity factor, 25 kDa subunit)|interpro:IPR015797(NUDIX)|ensemblplants:AT4G25550(gene)|ensemblplants:AT4G25550.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006364"(rRNA processing)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006397"(mRNA processing)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:KuAPJsxRHXq8OLRAz/Yt0xmqxqc3702 intact-crc:11EAAE5DE0FF47F2|rigid:e9lXcjdi8573MCO4xIdvNGAfhCI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:Q9SR06 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-1775627|ensemblplants:AT3G04680.1|ensemblplants:AT3G04680.2|ensemblplants:AT3G04680.3 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:clp1_arath(display_long)|uniprotkb:CLPS3(gene name)|psi-mi:CLPS3(display_short)|uniprotkb:CLP-like protein 3(gene name synonym)|uniprotkb:Protein CLP-SIMILAR PROTEIN 3(gene name synonym)|uniprotkb:F7O18.15(orf name)|uniprotkb:At3g04680(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775634|imex:IM-19266-17 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 interpro:IPR028606|refseq:NP_187119.1|interpro:IPR010655(Pre-mRNA cleavage complex II Clp1)|interpro:IPR032319|interpro:IPR032324|interpro:IPR027417|refseq:NP_001319471.1|refseq:NP_001327497.1|interpro:IPR038238|interpro:IPR038239|ensemblplants:AT3G04680(gene)|ensemblplants:AT3G04680.1(transcript)|ensemblplants:AT3G04680.2(transcript)|ensemblplants:AT3G04680.3(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006388"(tRNA splicing, via endonucleolytic cleavage and ligation)|go:"GO:0006396"(RNA processing)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0010228"(vegetative to reproductive phase transition of meristem)|go:"GO:0048827"(phyllome development)|go:"GO:0051731"(polynucleotide 5'-hydroxyl-kinase activity) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:D8cP0TsXbIWqoQgXosPb2476N3E3702 intact-crc:4B3F75009E4B9D27|rigid:Yr55gY02a+53Zc58vXEChl2k/Gc false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:Q9C710 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-1775638|uniprotkb:Q8VZG9|ensemblplants:AT1G66500.1 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:pcfs1_arath(display_long)|uniprotkb:PCFS1(gene name)|psi-mi:PCFS1(display_short)|uniprotkb:F28G11.6(orf name)|uniprotkb:At1g66500(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775644|imex:IM-19266-18 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 refseq:NP_176823.1|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT1G66500(gene)|ensemblplants:AT1G66500.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:9IXQFYI3Bn73Mk/h00pzyY6/7Vg3702 intact-crc:80FD311D90139DC1|rigid:N8/rG5ArMemtcd2aGWUrzYmdeVo false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:A9LNK9 uniprotkb:Q0WPF2 intact:EBI-962511|ensemblplants:AT1G30460.1|intact:EBI-1790852|uniprotkb:Q9S9Q6|uniprotkb:Q9S9Q5 intact:EBI-1775648|uniprotkb:Q8GW12|uniprotkb:Q9ZS85|ensemblplants:AT4G04885.1 psi-mi:cpsf_arath(display_long)|uniprotkb:CPSF30(gene name)|psi-mi:CPSF30(display_short)|uniprotkb:F26G16.6(orf name)|uniprotkb:Zinc finger CCCH domain-containing protein 11(gene name synonym)|uniprotkb:F26G16.5(orf name)|uniprotkb:At1g30460(locus name)|uniprotkb:OXT6(gene name synonym)|uniprotkb:Protein OXIDATIVE STRESS TOLERANT 6(gene name synonym) psi-mi:pcfs4_arath(display_long)|uniprotkb:PCFS4(gene name)|psi-mi:PCFS4(display_short)|uniprotkb:T4B21.1(orf name)|uniprotkb:At4g04885(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775655|imex:IM-19266-19 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT1G30460(gene)|ensemblplants:AT1G30460.1(transcript)|go:"GO:0000381"(regulation of alternative mRNA splicing, via spliceosome)|go:"GO:0000398"(mRNA splicing, via spliceosome)|go:"GO:0003677"(DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005516"(calmodulin binding)|go:"GO:0005634"(nucleus)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005737"(cytoplasm)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006396"(RNA processing)|go:"GO:0006979"(response to oxidative stress)|go:"GO:0009626"(plant-type hypersensitive response)|go:"GO:0031124"(mRNA 3'-end processing)|go:"GO:0034052"(positive regulation of plant-type hypersensitive response)|go:"GO:0043068"(positive regulation of programmed cell death)|go:"GO:0046872"(metal ion binding)|go:"GO:0048024"(regulation of mRNA splicing, via spliceosome)|go:"GO:1900363"(regulation of mRNA polyadenylation)|go:"GO:1990247"(N6-methyladenosine-containing RNA binding)|go:"GO:2000031"(regulation of salicylic acid mediated signaling pathway)|refseq:NP_174334.2|interpro:IPR007275(YT521-B-like protein)|interpro:IPR000571(Zinc finger, CCCH-type)|rcsb pdb:5ZUU|interpro:IPR036855 refseq:NP_680598.2|interpro:IPR008942(ENTH/VHS)|interpro:IPR006569(Regulation of nuclear pre-mRNA protein)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT4G04885(gene)|ensemblplants:AT4G04885.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0009911"(positive regulation of flower development)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LX+j1DfNN4H4x2irokLWfJxqqGg3702 rogid:LD6jYf8wDs0FemPagq+iyXJ8/fI3702 intact-crc:A68EA9A922E8EFB1|rigid:MkI+uiWySYiJXaAAUcW+Ut6S2fs false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GUP1 uniprotkb:Q9C710 intact:EBI-1775543|uniprotkb:Q8LKG5|uniprotkb:Q9FZ58|intact:EBI-7841938|intact:MINT-7712539|ensemblplants:AT1G17760.1 intact:EBI-1775638|uniprotkb:Q8VZG9|ensemblplants:AT1G66500.1 psi-mi:ctf77_arath(display_long)|uniprotkb:CSTF77(gene name)|psi-mi:CSTF77(display_short)|uniprotkb:CF-1 77 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 77 kDa subunit(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 2(gene name synonym)|uniprotkb:F11A6.10(orf name)|uniprotkb:At1g17760(locus name) psi-mi:pcfs1_arath(display_long)|uniprotkb:PCFS1(gene name)|psi-mi:PCFS1(display_short)|uniprotkb:F28G11.6(orf name)|uniprotkb:At1g66500(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775665|imex:IM-19266-20 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_173218.2|interpro:IPR003107(RNA-processing protein, HAT helix)|interpro:IPR008847(Suppressor of forked)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|ensemblplants:AT1G17760(gene)|ensemblplants:AT1G17760.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0060968"(obsolete regulation of gene silencing) refseq:NP_176823.1|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT1G66500(gene)|ensemblplants:AT1G66500.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:kOSGEvWI/AZ6hJEfq7fLnXj5Rl43702 rogid:9IXQFYI3Bn73Mk/h00pzyY6/7Vg3702 intact-crc:66623EC28AE70E19|rigid:YG/UjC+uMuTcJ2Yb7c1v8UN/hvg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GUP1 uniprotkb:Q9M9G6 intact:EBI-1775543|uniprotkb:Q8LKG5|uniprotkb:Q9FZ58|intact:EBI-7841938|intact:MINT-7712539|ensemblplants:AT1G17760.1 intact:EBI-1775671|intact:EBI-2013543|uniprotkb:Q8LKG6|ensemblplants:AT1G71800.1 psi-mi:ctf77_arath(display_long)|uniprotkb:CSTF77(gene name)|psi-mi:CSTF77(display_short)|uniprotkb:CF-1 77 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 77 kDa subunit(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 2(gene name synonym)|uniprotkb:F11A6.10(orf name)|uniprotkb:At1g17760(locus name) psi-mi:ctf64_arath(display_long)|uniprotkb:CSTF64(gene name)|psi-mi:CSTF64(display_short)|uniprotkb:CF-1 64 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 64 kDa subunit(gene name synonym)|uniprotkb:ESP1(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 1(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 19(gene name synonym)|uniprotkb:F14O23.18(orf name)|uniprotkb:At1g71800(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775678|imex:IM-19266-21 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_173218.2|interpro:IPR003107(RNA-processing protein, HAT helix)|interpro:IPR008847(Suppressor of forked)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|ensemblplants:AT1G17760(gene)|ensemblplants:AT1G17760.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0060968"(obsolete regulation of gene silencing) interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_177325.2|interpro:IPR038192|interpro:IPR025742|interpro:IPR026896|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT1G71800(gene)|ensemblplants:AT1G71800.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0048589"(developmental growth)|go:"GO:0060968"(obsolete regulation of gene silencing)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation) - - - figure legend:Additional file 2|caution:"The authors record this interaction as At1g17760 (CSTF77) interacts with C-terminus At1g71800 (CSTF64). However they fail to provide the c-terminal coordinates used."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:kOSGEvWI/AZ6hJEfq7fLnXj5Rl43702 rogid:EBjScj64FbkUcodBMMu3J/yQPMU3702 intact-crc:334275D8340FC34E|rigid:FyVae8vcxzAeDAFfyIgJliA1neI false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GUP1 uniprotkb:F4KDH9 intact:EBI-1775543|uniprotkb:Q8LKG5|uniprotkb:Q9FZ58|intact:EBI-7841938|intact:MINT-7712539|ensemblplants:AT1G17760.1 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 psi-mi:ctf77_arath(display_long)|uniprotkb:CSTF77(gene name)|psi-mi:CSTF77(display_short)|uniprotkb:CF-1 77 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 77 kDa subunit(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 2(gene name synonym)|uniprotkb:F11A6.10(orf name)|uniprotkb:At1g17760(locus name) psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775683|imex:IM-19266-22 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_173218.2|interpro:IPR003107(RNA-processing protein, HAT helix)|interpro:IPR008847(Suppressor of forked)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|ensemblplants:AT1G17760(gene)|ensemblplants:AT1G17760.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0060968"(obsolete regulation of gene silencing) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:kOSGEvWI/AZ6hJEfq7fLnXj5Rl43702 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 intact-crc:7BB4E97750AD07B8|rigid:92VNay74VmgNAMUwuJdX6C/WqIY false - sufficient binding region:1-137 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9FIX8 uniprotkb:Q8GUP1 intact:EBI-1775691|ensemblplants:AT5G43620.1 intact:EBI-1775543|uniprotkb:Q8LKG5|uniprotkb:Q9FZ58|intact:EBI-7841938|intact:MINT-7712539|ensemblplants:AT1G17760.1 psi-mi:pcfs5_arath(display_long)|uniprotkb:K9D7.12(orf name)|uniprotkb:At5g43620(locus name)|uniprotkb:PCFS5(gene name)|psi-mi:PCFS5(display_short) psi-mi:ctf77_arath(display_long)|uniprotkb:CSTF77(gene name)|psi-mi:CSTF77(display_short)|uniprotkb:CF-1 77 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 77 kDa subunit(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 2(gene name synonym)|uniprotkb:F11A6.10(orf name)|uniprotkb:At1g17760(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775696|imex:IM-19266-23 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|refseq:NP_199175.1|ensemblplants:AT5G43620(gene)|ensemblplants:AT5G43620.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) refseq:NP_173218.2|interpro:IPR003107(RNA-processing protein, HAT helix)|interpro:IPR008847(Suppressor of forked)|interpro:IPR011990(Tetratricopeptide-like helical)|interpro:IPR019734|ensemblplants:AT1G17760(gene)|ensemblplants:AT1G17760.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0060968"(obsolete regulation of gene silencing) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:7PI7YO6AwghTRqeJSKoQEDcCzYE3702 rogid:kOSGEvWI/AZ6hJEfq7fLnXj5Rl43702 intact-crc:AD986744CB6EF681|rigid:MF4Ioo3IhuxMvKwfSLvdUH3GoeQ false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9M9G6 uniprotkb:Q8L4J2 intact:EBI-1775671|intact:EBI-2013543|uniprotkb:Q8LKG6|ensemblplants:AT1G71800.1 intact:EBI-1775488|uniprotkb:F4K0J5|uniprotkb:Q9FME6|ensemblplants:AT5G60940.1 psi-mi:ctf64_arath(display_long)|uniprotkb:CSTF64(gene name)|psi-mi:CSTF64(display_short)|uniprotkb:CF-1 64 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 64 kDa subunit(gene name synonym)|uniprotkb:ESP1(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 1(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 19(gene name synonym)|uniprotkb:F14O23.18(orf name)|uniprotkb:At1g71800(locus name) psi-mi:ctf50_arath(display_long)|uniprotkb:CSTF50(gene name)|psi-mi:CSTF50(display_short)|uniprotkb:CF-1 50 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 50 kDa subunit(gene name synonym)|uniprotkb:MSL3.60(orf name)|uniprotkb:At5g60940(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775718|imex:IM-19266-24 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_177325.2|interpro:IPR038192|interpro:IPR025742|interpro:IPR026896|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT1G71800(gene)|ensemblplants:AT1G71800.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0048589"(developmental growth)|go:"GO:0060968"(obsolete regulation of gene silencing)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation) refseq:NP_200902.1|interpro:IPR015943(WD40/YVTN repeat-like)|interpro:IPR001680(WD40 repeat)|interpro:IPR019775|interpro:IPR044633|refseq:NP_974972.1|interpro:IPR036322|ensemblplants:AT5G60940(gene)|ensemblplants:AT5G60940.1(transcript)|go:"GO:0005848"(mRNA cleavage stimulating factor complex)|go:"GO:0031124"(mRNA 3'-end processing) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:EBjScj64FbkUcodBMMu3J/yQPMU3702 rogid:aUGA5TcctOHHcuybbytA8yXw9/M3702 intact-crc:026C9A9C7AFBAC48|rigid:3F/kO/uOvZ4MhX1hK5mLK8NggJk false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9M9G6 uniprotkb:F4JC20 intact:EBI-1775671|intact:EBI-2013543|uniprotkb:Q8LKG6|ensemblplants:AT1G71800.1 intact:EBI-1775583|uniprotkb:Q9C834|uniprotkb:Q9C904|ensemblplants:AT3G66652.1|ensemblplants:AT3G66652.2|ensemblplants:AT3G66652.3 psi-mi:ctf64_arath(display_long)|uniprotkb:CSTF64(gene name)|psi-mi:CSTF64(display_short)|uniprotkb:CF-1 64 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 64 kDa subunit(gene name synonym)|uniprotkb:ESP1(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 1(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 19(gene name synonym)|uniprotkb:F14O23.18(orf name)|uniprotkb:At1g71800(locus name) psi-mi:fips3_arath(display_long)|uniprotkb:FIPS3(gene name)|psi-mi:FIPS3(display_short)|uniprotkb:"Factor interacting with poly(A) polymerase-like 3"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [III](gene name synonym)|uniprotkb:F5E6.1(orf name)|uniprotkb:T8E24.6(orf name)|uniprotkb:At3g66652(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775723|imex:IM-19266-25 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_177325.2|interpro:IPR038192|interpro:IPR025742|interpro:IPR026896|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT1G71800(gene)|ensemblplants:AT1G71800.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0048589"(developmental growth)|go:"GO:0060968"(obsolete regulation of gene silencing)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation) interpro:IPR007854(Fip1)|refseq:NP_001189830.1|refseq:NP_187318.2|refseq:NP_001326511.1|ensemblplants:AT3G66652(gene)|ensemblplants:AT3G66652.1(transcript)|ensemblplants:AT3G66652.2(transcript)|ensemblplants:AT3G66652.3(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:EBjScj64FbkUcodBMMu3J/yQPMU3702 rogid:6LzMr5nV+7sC6bPYMBZ5Gd2NnvI3702 intact-crc:FD1705D1A96B4631|rigid:twu7xX7cujuLCIsUQpOn2eYtNFY false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:F4KDH9 uniprotkb:Q9M9G6 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 intact:EBI-1775671|intact:EBI-2013543|uniprotkb:Q8LKG6|ensemblplants:AT1G71800.1 psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:ctf64_arath(display_long)|uniprotkb:CSTF64(gene name)|psi-mi:CSTF64(display_short)|uniprotkb:CF-1 64 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 64 kDa subunit(gene name synonym)|uniprotkb:ESP1(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 1(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 19(gene name synonym)|uniprotkb:F14O23.18(orf name)|uniprotkb:At1g71800(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775727|imex:IM-19266-26 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_177325.2|interpro:IPR038192|interpro:IPR025742|interpro:IPR026896|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT1G71800(gene)|ensemblplants:AT1G71800.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0048589"(developmental growth)|go:"GO:0060968"(obsolete regulation of gene silencing)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/11 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 rogid:EBjScj64FbkUcodBMMu3J/yQPMU3702 intact-crc:B4EE0956311894B0|rigid:MsAPDinBTmrd7bpGRIJE15dCPOI false sufficient binding region:407-1196 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9M9G6 uniprotkb:F4KDH9 intact:EBI-1775671|intact:EBI-2013543|uniprotkb:Q8LKG6|ensemblplants:AT1G71800.1 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 psi-mi:ctf64_arath(display_long)|uniprotkb:CSTF64(gene name)|psi-mi:CSTF64(display_short)|uniprotkb:CF-1 64 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 64 kDa subunit(gene name synonym)|uniprotkb:ESP1(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 1(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 19(gene name synonym)|uniprotkb:F14O23.18(orf name)|uniprotkb:At1g71800(locus name) psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775738|imex:IM-19266-27 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_177325.2|interpro:IPR038192|interpro:IPR025742|interpro:IPR026896|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT1G71800(gene)|ensemblplants:AT1G71800.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0048589"(developmental growth)|go:"GO:0060968"(obsolete regulation of gene silencing)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:EBjScj64FbkUcodBMMu3J/yQPMU3702 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 intact-crc:927B32D4E05C283C|rigid:MsAPDinBTmrd7bpGRIJE15dCPOI false - sufficient binding region:1-137 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9M9G6 uniprotkb:Q9LX90 intact:EBI-1775671|intact:EBI-2013543|uniprotkb:Q8LKG6|ensemblplants:AT1G71800.1 intact:EBI-1775745|uniprotkb:F4KGU0|uniprotkb:F4KGU1|ensemblplants:AT5G10350.1 psi-mi:ctf64_arath(display_long)|uniprotkb:CSTF64(gene name)|psi-mi:CSTF64(display_short)|uniprotkb:CF-1 64 kDa subunit(gene name synonym)|uniprotkb:Cleavage stimulation factor 64 kDa subunit(gene name synonym)|uniprotkb:ESP1(gene name synonym)|uniprotkb:Protein ENHANCED SILENCING PHENOTYPE 1(gene name synonym)|uniprotkb:Protein SUPPRESSORS OF OVEREXPRESSED FCA 19(gene name synonym)|uniprotkb:F14O23.18(orf name)|uniprotkb:At1g71800(locus name) psi-mi:pabn3_arath(display_long)|uniprotkb:PABN3(gene name)|psi-mi:PABN3(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 3"(gene name synonym)|uniprotkb:"Poly(A)-binding protein III"(gene name synonym)|uniprotkb:F12B17.300(orf name)|uniprotkb:At5g10350(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775756|imex:IM-19266-28 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_177325.2|interpro:IPR038192|interpro:IPR025742|interpro:IPR026896|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT1G71800(gene)|ensemblplants:AT1G71800.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005847"(mRNA cleavage and polyadenylation specificity factor complex)|go:"GO:0031047"(gene silencing by RNA)|go:"GO:0031123"(RNA 3'-end processing)|go:"GO:0042868"(antisense RNA metabolic process)|go:"GO:0045892"(negative regulation of transcription, DNA-templated)|go:"GO:0048589"(developmental growth)|go:"GO:0060968"(obsolete regulation of gene silencing)|go:"GO:0098789"(pre-mRNA cleavage required for polyadenylation) refseq:NP_196597.1|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_850803.1|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT5G10350(gene)|ensemblplants:AT5G10350.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005774"(vacuolar membrane)|go:"GO:0008143"("poly(A) binding")|go:"GO:0016607"(nuclear speck)|go:"GO:0043621"(protein self-association) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:EBjScj64FbkUcodBMMu3J/yQPMU3702 rogid:NZI947ceRtnySkR9wFJBDadZbf03702 intact-crc:2AB854FA511EE60F|rigid:VI4E+km2vLBwqEYEfDsC9CYebhw false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8VYW1 uniprotkb:Q9LMT2 intact:EBI-962558|ensemblplants:AT4G32850.1|intact:EBI-1775774|uniprotkb:B3H654|uniprotkb:B9DFE4|uniprotkb:F4JV63|uniprotkb:F4JV67|uniprotkb:F4JV69|uniprotkb:F4JV71|uniprotkb:F4JV72|uniprotkb:Q0WLA9|uniprotkb:Q7XJ91|uniprotkb:Q9M075 intact:EBI-1775760|uniprotkb:F4I948|ensemblplants:AT1G17980.1 psi-mi:paps4_arath(display_long)|uniprotkb:PAPS4(gene name)|psi-mi:PAPS4(display_short)|uniprotkb:NPAP(gene name synonym)|uniprotkb:Polynucleotide adenylyltransferase 4(gene name synonym)|uniprotkb:T16I18.60(orf name)|uniprotkb:At4g32850(locus name) psi-mi:paps1_arath(display_long)|uniprotkb:PAPS1(gene name)|psi-mi:PAPS1(display_short)|uniprotkb:Polynucleotide adenylyltransferase 1(gene name synonym)|uniprotkb:F2H15.20(orf name)|uniprotkb:At1g17980(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775785|imex:IM-19266-29 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT4G32850(gene)|ensemblplants:AT4G32850.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding)|refseq:NP_001031778.1|refseq:NP_001031779.1|refseq:NP_001119102.1|refseq:NP_001119103.1|refseq:NP_195011.4|refseq:NP_849562.2|refseq:NP_974668.1|refseq:NP_974669.1|refseq:NP_974670.2|refseq:NP_849561.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|interpro:IPR014492("Poly(A) polymerase")|refseq:NP_001329663.1|refseq:NP_001329664.1|refseq:NP_001329665.1|refseq:NP_001329666.1|refseq:NP_001329667.1|refseq:NP_001329668.1|refseq:NP_001329669.1|interpro:IPR043519 refseq:NP_173240.2|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|interpro:IPR014492("Poly(A) polymerase")|refseq:NP_973855.1|interpro:IPR043519|ensemblplants:AT1G17980(gene)|ensemblplants:AT1G17980.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0008285"(negative regulation of cell population proliferation)|go:"GO:0009908"(flower development)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0045824"(negative regulation of innate immune response)|go:"GO:0046872"(metal ion binding)|go:"GO:0048366"(leaf development)|go:"GO:0048451"(petal formation) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:+NhZ7+45q7pLJVkgvKpD84bZ6TY3702 rogid:weh0NVehrFmJ2YyCBYRP/4QZCUc3702 intact-crc:7463A61B6FAF0250|rigid:K6mNxlEyDzAaUGwiuYwZAYPfrE4 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:O82312 uniprotkb:F4KDH9 intact:EBI-1775513|uniprotkb:Q94BP6|uniprotkb:Q9LKX0|uniprotkb:F4ISP7|uniprotkb:F4ISP8|uniprotkb:F4ISP9|ensemblplants:AT2G25850.2 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 psi-mi:paps2_arath(display_long)|uniprotkb:PAPS2(gene name)|psi-mi:PAPS2(display_short)|uniprotkb:Polynucleotide adenylyltransferase 2(gene name synonym)|uniprotkb:F17H15.12(orf name)|uniprotkb:At2g25850(locus name) psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775791|imex:IM-19266-30 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_565611.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|refseq:NP_001031417.1|refseq:NP_001189603.1|refseq:NP_850071.1|interpro:IPR043519|ensemblplants:AT2G25850(gene)|ensemblplants:AT2G25850.2(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:8FgUxpQLSYpmk+eqrQw/NY0rNHY3702 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 intact-crc:C7B9D182FA36C70D|rigid:wnkSBbcLn0L2HK20GYgaZGsUsjg false - sufficient binding region:1-137 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:F4KDH9 uniprotkb:Q56XM9 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 intact:EBI-1775567|uniprotkb:Q7XJ92|uniprotkb:Q9C8Z7|ensemblplants:AT3G06560.1 psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:paps3_arath(display_long)|uniprotkb:PAPS3(gene name)|psi-mi:PAPS3(display_short)|uniprotkb:Polynucleotide adenylyltransferase 3(gene name synonym)|uniprotkb:F5E6.11(orf name)|uniprotkb:At3g06560(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775798|imex:IM-19266-31 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 refseq:NP_187308.3|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR014492("Poly(A) polymerase")|interpro:IPR043519|ensemblplants:AT3G06560(gene)|ensemblplants:AT3G06560.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 rogid:FETba7rgLKDjOmVuQtZWKX+Ch3A3702 intact-crc:3FE8A9E921296A55|rigid:cbSL9498N0lR2t4hoN2yGmMNZv0 false sufficient binding region:1-137 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8VYW1 uniprotkb:F4JC20 intact:EBI-962558|ensemblplants:AT4G32850.1|intact:EBI-1775774|uniprotkb:B3H654|uniprotkb:B9DFE4|uniprotkb:F4JV63|uniprotkb:F4JV67|uniprotkb:F4JV69|uniprotkb:F4JV71|uniprotkb:F4JV72|uniprotkb:Q0WLA9|uniprotkb:Q7XJ91|uniprotkb:Q9M075 intact:EBI-1775583|uniprotkb:Q9C834|uniprotkb:Q9C904|ensemblplants:AT3G66652.1|ensemblplants:AT3G66652.2|ensemblplants:AT3G66652.3 psi-mi:paps4_arath(display_long)|uniprotkb:PAPS4(gene name)|psi-mi:PAPS4(display_short)|uniprotkb:NPAP(gene name synonym)|uniprotkb:Polynucleotide adenylyltransferase 4(gene name synonym)|uniprotkb:T16I18.60(orf name)|uniprotkb:At4g32850(locus name) psi-mi:fips3_arath(display_long)|uniprotkb:FIPS3(gene name)|psi-mi:FIPS3(display_short)|uniprotkb:"Factor interacting with poly(A) polymerase-like 3"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [III](gene name synonym)|uniprotkb:F5E6.1(orf name)|uniprotkb:T8E24.6(orf name)|uniprotkb:At3g66652(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775814|imex:IM-19266-32 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT4G32850(gene)|ensemblplants:AT4G32850.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding)|refseq:NP_001031778.1|refseq:NP_001031779.1|refseq:NP_001119102.1|refseq:NP_001119103.1|refseq:NP_195011.4|refseq:NP_849562.2|refseq:NP_974668.1|refseq:NP_974669.1|refseq:NP_974670.2|refseq:NP_849561.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|interpro:IPR014492("Poly(A) polymerase")|refseq:NP_001329663.1|refseq:NP_001329664.1|refseq:NP_001329665.1|refseq:NP_001329666.1|refseq:NP_001329667.1|refseq:NP_001329668.1|refseq:NP_001329669.1|interpro:IPR043519 interpro:IPR007854(Fip1)|refseq:NP_001189830.1|refseq:NP_187318.2|refseq:NP_001326511.1|ensemblplants:AT3G66652(gene)|ensemblplants:AT3G66652.1(transcript)|ensemblplants:AT3G66652.2(transcript)|ensemblplants:AT3G66652.3(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:+NhZ7+45q7pLJVkgvKpD84bZ6TY3702 rogid:6LzMr5nV+7sC6bPYMBZ5Gd2NnvI3702 intact-crc:A5607FA89AD5B488|rigid:afm1D5J/vw/BxzBYxdtbc7YU9Eo false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8VYW1 uniprotkb:F4KDH9 intact:EBI-962558|ensemblplants:AT4G32850.1|intact:EBI-1775774|uniprotkb:B3H654|uniprotkb:B9DFE4|uniprotkb:F4JV63|uniprotkb:F4JV67|uniprotkb:F4JV69|uniprotkb:F4JV71|uniprotkb:F4JV72|uniprotkb:Q0WLA9|uniprotkb:Q7XJ91|uniprotkb:Q9M075 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 psi-mi:paps4_arath(display_long)|uniprotkb:PAPS4(gene name)|psi-mi:PAPS4(display_short)|uniprotkb:NPAP(gene name synonym)|uniprotkb:Polynucleotide adenylyltransferase 4(gene name synonym)|uniprotkb:T16I18.60(orf name)|uniprotkb:At4g32850(locus name) psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775819|imex:IM-19266-33 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT4G32850(gene)|ensemblplants:AT4G32850.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding)|refseq:NP_001031778.1|refseq:NP_001031779.1|refseq:NP_001119102.1|refseq:NP_001119103.1|refseq:NP_195011.4|refseq:NP_849562.2|refseq:NP_974668.1|refseq:NP_974669.1|refseq:NP_974670.2|refseq:NP_849561.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|interpro:IPR014492("Poly(A) polymerase")|refseq:NP_001329663.1|refseq:NP_001329664.1|refseq:NP_001329665.1|refseq:NP_001329666.1|refseq:NP_001329667.1|refseq:NP_001329668.1|refseq:NP_001329669.1|interpro:IPR043519 ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:+NhZ7+45q7pLJVkgvKpD84bZ6TY3702 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 intact-crc:94F0D4FE6012BA55|rigid:nvW5Or+d+h3D2NaPskGkOniT0mA false - sufficient binding region:1-137 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8VYW1 uniprotkb:Q9M8J2 intact:EBI-962558|ensemblplants:AT4G32850.1|intact:EBI-1775774|uniprotkb:B3H654|uniprotkb:B9DFE4|uniprotkb:F4JV63|uniprotkb:F4JV67|uniprotkb:F4JV69|uniprotkb:F4JV71|uniprotkb:F4JV72|uniprotkb:Q0WLA9|uniprotkb:Q7XJ91|uniprotkb:Q9M075 intact:EBI-1775608|uniprotkb:Q8GX53|ensemblplants:AT3G06260.1 psi-mi:paps4_arath(display_long)|uniprotkb:PAPS4(gene name)|psi-mi:PAPS4(display_short)|uniprotkb:NPAP(gene name synonym)|uniprotkb:Polynucleotide adenylyltransferase 4(gene name synonym)|uniprotkb:T16I18.60(orf name)|uniprotkb:At4g32850(locus name) psi-mi:gatl4_arath(display_long)|uniprotkb:GATL4(gene name)|psi-mi:GATL4(display_short)|uniprotkb:GOLS9(gene name synonym)|uniprotkb:Galactinol synthase 9(gene name synonym)|uniprotkb:F28L1.20(orf name)|uniprotkb:At3g06260(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775826|imex:IM-19266-34 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT4G32850(gene)|ensemblplants:AT4G32850.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding)|refseq:NP_001031778.1|refseq:NP_001031779.1|refseq:NP_001119102.1|refseq:NP_001119103.1|refseq:NP_195011.4|refseq:NP_849562.2|refseq:NP_974668.1|refseq:NP_974669.1|refseq:NP_974670.2|refseq:NP_849561.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|interpro:IPR014492("Poly(A) polymerase")|refseq:NP_001329663.1|refseq:NP_001329664.1|refseq:NP_001329665.1|refseq:NP_001329666.1|refseq:NP_001329667.1|refseq:NP_001329668.1|refseq:NP_001329669.1|interpro:IPR043519 interpro:IPR002495(Glycosyl transferase, family 8)|refseq:NP_187277.1|interpro:IPR029044|ensemblplants:AT3G06260(gene)|ensemblplants:AT3G06260.1(transcript)|go:"GO:0000139"(Golgi membrane)|go:"GO:0005794"(Golgi apparatus)|go:"GO:0016021"(integral component of membrane)|go:"GO:0045489"(pectin biosynthetic process)|go:"GO:0047262"(polygalacturonate 4-alpha-galacturonosyltransferase activity)|go:"GO:0071555"(cell wall organization)|go:"GO:0090406"(pollen tube) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:+NhZ7+45q7pLJVkgvKpD84bZ6TY3702 rogid:+02jkq18EtUyZbPPzNsAgBIaAIE3702 intact-crc:22F6251BC1CC43CF|rigid:jQ+EtDtOhr2xS95j00hVIhpnpQo false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q93VI4 uniprotkb:Q8VYW1 intact:EBI-962543|ensemblplants:AT5G51120.1|uniprotkb:Q8LG48|uniprotkb:Q9LU62 intact:EBI-962558|ensemblplants:AT4G32850.1|intact:EBI-1775774|uniprotkb:B3H654|uniprotkb:B9DFE4|uniprotkb:F4JV63|uniprotkb:F4JV67|uniprotkb:F4JV69|uniprotkb:F4JV71|uniprotkb:F4JV72|uniprotkb:Q0WLA9|uniprotkb:Q7XJ91|uniprotkb:Q9M075 psi-mi:pabn1_arath(display_long)|uniprotkb:PABN1(gene name)|psi-mi:PABN1(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 1"(gene name synonym)|uniprotkb:"Poly(A)-binding protein I"(gene name synonym)|uniprotkb:MWD22.6(orf name)|uniprotkb:At5g51120(locus name) psi-mi:paps4_arath(display_long)|uniprotkb:PAPS4(gene name)|psi-mi:PAPS4(display_short)|uniprotkb:NPAP(gene name synonym)|uniprotkb:Polynucleotide adenylyltransferase 4(gene name synonym)|uniprotkb:T16I18.60(orf name)|uniprotkb:At4g32850(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775848|imex:IM-19266-35 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G51120(gene)|ensemblplants:AT5G51120.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0016607"(nuclear speck)|refseq:NP_568751.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979 ensemblplants:AT4G32850(gene)|ensemblplants:AT4G32850.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding)|refseq:NP_001031778.1|refseq:NP_001031779.1|refseq:NP_001119102.1|refseq:NP_001119103.1|refseq:NP_195011.4|refseq:NP_849562.2|refseq:NP_974668.1|refseq:NP_974669.1|refseq:NP_974670.2|refseq:NP_849561.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|interpro:IPR014492("Poly(A) polymerase")|refseq:NP_001329663.1|refseq:NP_001329664.1|refseq:NP_001329665.1|refseq:NP_001329666.1|refseq:NP_001329667.1|refseq:NP_001329668.1|refseq:NP_001329669.1|interpro:IPR043519 - - - figure legend:Additional file 2|caution:"The authors idicate that At5g51120 (PABN1) is 1-220 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR) databases records state that the protein is 227 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:dF29BIJNPKmA87nDpd9/6uf1hC03702 rogid:+NhZ7+45q7pLJVkgvKpD84bZ6TY3702 intact-crc:16CC46240D2C001C|rigid:t/WzAVk3jBdrF8AS+omubrFwzaM false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8VYW1 uniprotkb:Q9FJN9 intact:EBI-962558|ensemblplants:AT4G32850.1|intact:EBI-1775774|uniprotkb:B3H654|uniprotkb:B9DFE4|uniprotkb:F4JV63|uniprotkb:F4JV67|uniprotkb:F4JV69|uniprotkb:F4JV71|uniprotkb:F4JV72|uniprotkb:Q0WLA9|uniprotkb:Q7XJ91|uniprotkb:Q9M075 intact:EBI-592121|ensemblplants:AT5G65260.1 psi-mi:paps4_arath(display_long)|uniprotkb:PAPS4(gene name)|psi-mi:PAPS4(display_short)|uniprotkb:NPAP(gene name synonym)|uniprotkb:Polynucleotide adenylyltransferase 4(gene name synonym)|uniprotkb:T16I18.60(orf name)|uniprotkb:At4g32850(locus name) psi-mi:pabn2_arath(display_long)|uniprotkb:PABN2(gene name)|psi-mi:PABN2(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 2"(gene name synonym)|uniprotkb:"Poly(A)-binding protein II"(gene name synonym)|uniprotkb:MQN23.20(orf name)|uniprotkb:At5g65260(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775853|imex:IM-19266-36 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT4G32850(gene)|ensemblplants:AT4G32850.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding)|refseq:NP_001031778.1|refseq:NP_001031779.1|refseq:NP_001119102.1|refseq:NP_001119103.1|refseq:NP_195011.4|refseq:NP_849562.2|refseq:NP_974668.1|refseq:NP_974669.1|refseq:NP_974670.2|refseq:NP_849561.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|interpro:IPR014492("Poly(A) polymerase")|refseq:NP_001329663.1|refseq:NP_001329664.1|refseq:NP_001329665.1|refseq:NP_001329666.1|refseq:NP_001329667.1|refseq:NP_001329668.1|refseq:NP_001329669.1|interpro:IPR043519 refseq:NP_201329.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979|ensemblplants:AT5G65260(gene)|ensemblplants:AT5G65260.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016607"(nuclear speck) - - - figure legend:Additional file 2|caution:"The authors idicate that At5g65260 (PABN2) is 1-227 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR) databases records state that the protein is 220 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:+NhZ7+45q7pLJVkgvKpD84bZ6TY3702 rogid:R0Jqu41wMmmiD4tnNHFM1Buf/Dw3702 intact-crc:2CE8099897FF8D1F|rigid:pLZZiXEjp5zy17mAjndud+//bE8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9LX90 uniprotkb:Q8VYW1 intact:EBI-1775745|uniprotkb:F4KGU0|uniprotkb:F4KGU1|ensemblplants:AT5G10350.1 intact:EBI-962558|ensemblplants:AT4G32850.1|intact:EBI-1775774|uniprotkb:B3H654|uniprotkb:B9DFE4|uniprotkb:F4JV63|uniprotkb:F4JV67|uniprotkb:F4JV69|uniprotkb:F4JV71|uniprotkb:F4JV72|uniprotkb:Q0WLA9|uniprotkb:Q7XJ91|uniprotkb:Q9M075 psi-mi:pabn3_arath(display_long)|uniprotkb:PABN3(gene name)|psi-mi:PABN3(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 3"(gene name synonym)|uniprotkb:"Poly(A)-binding protein III"(gene name synonym)|uniprotkb:F12B17.300(orf name)|uniprotkb:At5g10350(locus name) psi-mi:paps4_arath(display_long)|uniprotkb:PAPS4(gene name)|psi-mi:PAPS4(display_short)|uniprotkb:NPAP(gene name synonym)|uniprotkb:Polynucleotide adenylyltransferase 4(gene name synonym)|uniprotkb:T16I18.60(orf name)|uniprotkb:At4g32850(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775858|imex:IM-19266-37 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_196597.1|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_850803.1|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT5G10350(gene)|ensemblplants:AT5G10350.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005774"(vacuolar membrane)|go:"GO:0008143"("poly(A) binding")|go:"GO:0016607"(nuclear speck)|go:"GO:0043621"(protein self-association) ensemblplants:AT4G32850(gene)|ensemblplants:AT4G32850.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0004652"(polynucleotide adenylyltransferase activity)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0043631"(RNA polyadenylation)|go:"GO:0046872"(metal ion binding)|refseq:NP_001031778.1|refseq:NP_001031779.1|refseq:NP_001119102.1|refseq:NP_001119103.1|refseq:NP_195011.4|refseq:NP_849562.2|refseq:NP_974668.1|refseq:NP_974669.1|refseq:NP_974670.2|refseq:NP_849561.1|interpro:IPR002934(Nucleotidyltransferase)|interpro:IPR011068(Nucleotidyltransferase, class I, C-terminal-like)|interpro:IPR007012("Poly(A) polymerase, central region")|interpro:IPR007010("Poly(A) polymerase, RNA-binding region")|interpro:IPR014492("Poly(A) polymerase")|refseq:NP_001329663.1|refseq:NP_001329664.1|refseq:NP_001329665.1|refseq:NP_001329666.1|refseq:NP_001329667.1|refseq:NP_001329668.1|refseq:NP_001329669.1|interpro:IPR043519 - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:NZI947ceRtnySkR9wFJBDadZbf03702 rogid:+NhZ7+45q7pLJVkgvKpD84bZ6TY3702 intact-crc:72CF2E8362A014B6|rigid:xkuvTO0firSmgqaQJk/y+QljBVg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:F4KDH9 uniprotkb:F4JC20 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 intact:EBI-1775583|uniprotkb:Q9C834|uniprotkb:Q9C904|ensemblplants:AT3G66652.1|ensemblplants:AT3G66652.2|ensemblplants:AT3G66652.3 psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:fips3_arath(display_long)|uniprotkb:FIPS3(gene name)|psi-mi:FIPS3(display_short)|uniprotkb:"Factor interacting with poly(A) polymerase-like 3"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [III](gene name synonym)|uniprotkb:F5E6.1(orf name)|uniprotkb:T8E24.6(orf name)|uniprotkb:At3g66652(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775862|imex:IM-19266-38 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 interpro:IPR007854(Fip1)|refseq:NP_001189830.1|refseq:NP_187318.2|refseq:NP_001326511.1|ensemblplants:AT3G66652(gene)|ensemblplants:AT3G66652.1(transcript)|ensemblplants:AT3G66652.2(transcript)|ensemblplants:AT3G66652.3(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing) - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 rogid:6LzMr5nV+7sC6bPYMBZ5Gd2NnvI3702 intact-crc:09C54782E2EBAB3E|rigid:RmlxIiDBICiIwHdr8Sz0WTIQ+KY false sufficient binding region:1-137 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9FLE2 uniprotkb:F4JC20 intact:EBI-1775875|ensemblplants:AT5G39930.1 intact:EBI-1775583|uniprotkb:Q9C834|uniprotkb:Q9C904|ensemblplants:AT3G66652.1|ensemblplants:AT3G66652.2|ensemblplants:AT3G66652.3 psi-mi:clp5_arath(display_long)|uniprotkb:CLPS5(gene name)|psi-mi:CLPS5(display_short)|uniprotkb:CLP-like protein 5(gene name synonym)|uniprotkb:Protein CLP-SIMILAR PROTEIN 5(gene name synonym)|uniprotkb:MYH19.12(orf name)|uniprotkb:At5g39930(locus name) psi-mi:fips3_arath(display_long)|uniprotkb:FIPS3(gene name)|psi-mi:FIPS3(display_short)|uniprotkb:"Factor interacting with poly(A) polymerase-like 3"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [III](gene name synonym)|uniprotkb:F5E6.1(orf name)|uniprotkb:T8E24.6(orf name)|uniprotkb:At3g66652(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775882|imex:IM-19266-39 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR028606|interpro:IPR010655(Pre-mRNA cleavage complex II Clp1)|refseq:NP_198809.2|interpro:IPR032319|interpro:IPR032324|interpro:IPR027417|interpro:IPR038238|interpro:IPR038239|ensemblplants:AT5G39930(gene)|ensemblplants:AT5G39930.1(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006388"(tRNA splicing, via endonucleolytic cleavage and ligation)|go:"GO:0006396"(RNA processing)|go:"GO:0051731"(polynucleotide 5'-hydroxyl-kinase activity) interpro:IPR007854(Fip1)|refseq:NP_001189830.1|refseq:NP_187318.2|refseq:NP_001326511.1|ensemblplants:AT3G66652(gene)|ensemblplants:AT3G66652.1(transcript)|ensemblplants:AT3G66652.2(transcript)|ensemblplants:AT3G66652.3(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing) - - - figure legend:Additional file 2|caution:"The authors state that At5g39930 (CLPS5) is 423 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states the proten is 424 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:pPUpOFB6ZiZ+nfNM4Nfu9y5fOAo3702 rogid:6LzMr5nV+7sC6bPYMBZ5Gd2NnvI3702 intact-crc:E6FEC3E1F59406FC|rigid:yiRbIuVyKRuGqX48KwoM33AXAig false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9C710 uniprotkb:F4JC20 intact:EBI-1775638|uniprotkb:Q8VZG9|ensemblplants:AT1G66500.1 intact:EBI-1775583|uniprotkb:Q9C834|uniprotkb:Q9C904|ensemblplants:AT3G66652.1|ensemblplants:AT3G66652.2|ensemblplants:AT3G66652.3 psi-mi:pcfs1_arath(display_long)|uniprotkb:PCFS1(gene name)|psi-mi:PCFS1(display_short)|uniprotkb:F28G11.6(orf name)|uniprotkb:At1g66500(locus name) psi-mi:fips3_arath(display_long)|uniprotkb:FIPS3(gene name)|psi-mi:FIPS3(display_short)|uniprotkb:"Factor interacting with poly(A) polymerase-like 3"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [III](gene name synonym)|uniprotkb:F5E6.1(orf name)|uniprotkb:T8E24.6(orf name)|uniprotkb:At3g66652(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775887|imex:IM-19266-40 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_176823.1|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT1G66500(gene)|ensemblplants:AT1G66500.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) interpro:IPR007854(Fip1)|refseq:NP_001189830.1|refseq:NP_187318.2|refseq:NP_001326511.1|ensemblplants:AT3G66652(gene)|ensemblplants:AT3G66652.1(transcript)|ensemblplants:AT3G66652.2(transcript)|ensemblplants:AT3G66652.3(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:9IXQFYI3Bn73Mk/h00pzyY6/7Vg3702 rogid:6LzMr5nV+7sC6bPYMBZ5Gd2NnvI3702 intact-crc:6A591A05368DBDC2|rigid:MmhGpdv6eDNR5ydvEoQXnVivTqs false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:F4KDH9 uniprotkb:Q94AF0 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 intact:EBI-962531|ensemblplants:AT4G29820.1|uniprotkb:Q9SZQ4 psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:cfis1_arath(display_long)|uniprotkb:CFIS1(gene name)|psi-mi:CFIS1(display_short)|uniprotkb:CFIM25(gene name synonym)|uniprotkb:Cleavage and polyadenylation specificity factor 25 kDa subunit(gene name synonym)|uniprotkb:Cleavage and polyadenylation specificity factor subunit 25(gene name synonym)|uniprotkb:F27B13.60(orf name)|uniprotkb:At4g29820(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775991|imex:IM-19266-41 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 ensemblplants:AT4G29820.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006397"(mRNA processing)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding)|ensemblplants:AT4G29820(gene)|refseq:NP_567835.1|interpro:IPR016706(Cleavage and polyadenylation specificity factor, 25 kDa subunit)|interpro:IPR015797(NUDIX) - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 rogid:bYMtnBv52EAGkoozfendB/lZCgo3702 intact-crc:241176BDF8C1CD2B|rigid:Q1YMW1FY2bfTm7zeOrHikvXREnw false sufficient binding region:1-137 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q8GXS3 uniprotkb:F4KDH9 intact:EBI-1775616|intact:EBI-2130705|uniprotkb:O65606|uniprotkb:Q570Y1|uniprotkb:Q9M0K5|ensemblplants:AT4G25550.1 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 psi-mi:cfis2_arath(display_long)|uniprotkb:CFIS2(gene name)|psi-mi:CFIS2(display_short)|uniprotkb:M7J2.80(orf name)|uniprotkb:At4g25550(locus name) psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1775999|imex:IM-19266-42 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_194285.2|interpro:IPR016706(Cleavage and polyadenylation specificity factor, 25 kDa subunit)|interpro:IPR015797(NUDIX)|ensemblplants:AT4G25550(gene)|ensemblplants:AT4G25550.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005829"(cytosol)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006364"(rRNA processing)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006397"(mRNA processing)|go:"GO:0016787"(hydrolase activity)|go:"GO:0046872"(metal ion binding) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:KuAPJsxRHXq8OLRAz/Yt0xmqxqc3702 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 intact-crc:2D3AA5EEB5F77C43|rigid:l7CrsKHodE+ygWPeS5S1MpiM3rg false - sufficient binding region:1-137 - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:F4KDH9 uniprotkb:Q93VI4 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 intact:EBI-962543|ensemblplants:AT5G51120.1|uniprotkb:Q8LG48|uniprotkb:Q9LU62 psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:pabn1_arath(display_long)|uniprotkb:PABN1(gene name)|psi-mi:PABN1(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 1"(gene name synonym)|uniprotkb:"Poly(A)-binding protein I"(gene name synonym)|uniprotkb:MWD22.6(orf name)|uniprotkb:At5g51120(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776006|imex:IM-19266-43 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 ensemblplants:AT5G51120(gene)|ensemblplants:AT5G51120.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0016607"(nuclear speck)|refseq:NP_568751.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979 - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|caution:"The authors state At5g51120 (PABN1) is 220 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR) database records show it is 227 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 rogid:dF29BIJNPKmA87nDpd9/6uf1hC03702 intact-crc:0457C5FB7BD3B19F|rigid:J/G/3JcKn872q7Gk6bTJXFqj8E8 false sufficient binding region:1-137 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:F4KDH9 uniprotkb:Q9FJN9 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 intact:EBI-592121|ensemblplants:AT5G65260.1 psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:pabn2_arath(display_long)|uniprotkb:PABN2(gene name)|psi-mi:PABN2(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 2"(gene name synonym)|uniprotkb:"Poly(A)-binding protein II"(gene name synonym)|uniprotkb:MQN23.20(orf name)|uniprotkb:At5g65260(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776014|imex:IM-19266-44 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 refseq:NP_201329.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979|ensemblplants:AT5G65260(gene)|ensemblplants:AT5G65260.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016607"(nuclear speck) - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|caution:"The authors state At5g65260 PABN2 is 227 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR0 database records show it is 220 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 rogid:R0Jqu41wMmmiD4tnNHFM1Buf/Dw3702 intact-crc:2E93ED6874E9F4A3|rigid:awMG2NueaPSjMB2RJ74tMQZvL5w false sufficient binding region:1-137 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:F4KDH9 uniprotkb:Q9LX90 intact:EBI-962489|ensemblplants:AT5G58040.1|uniprotkb:Q9FGU0 intact:EBI-1775745|uniprotkb:F4KGU0|uniprotkb:F4KGU1|ensemblplants:AT5G10350.1 psi-mi:fips5_arath(display_long)|uniprotkb:FIPS5(gene name)|psi-mi:FIPS5(display_short)|uniprotkb:FIP1[V](gene name synonym)|uniprotkb:"Factor interacting with poly(A) polymerase 1-like 5"(gene name synonym)|uniprotkb:Protein HOMOLOG OF YEAST FIP1 [V](gene name synonym)|uniprotkb:At5g58040(locus name) psi-mi:pabn3_arath(display_long)|uniprotkb:PABN3(gene name)|psi-mi:PABN3(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 3"(gene name synonym)|uniprotkb:"Poly(A)-binding protein III"(gene name synonym)|uniprotkb:F12B17.300(orf name)|uniprotkb:At5g10350(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776029|imex:IM-19266-45 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G58040(gene)|ensemblplants:AT5G58040.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0006397"(mRNA processing)|go:"GO:0042802"(identical protein binding)|interpro:IPR007854(Fip1)|refseq:NP_200612.2 refseq:NP_196597.1|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_850803.1|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT5G10350(gene)|ensemblplants:AT5G10350.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005774"(vacuolar membrane)|go:"GO:0008143"("poly(A) binding")|go:"GO:0016607"(nuclear speck)|go:"GO:0043621"(protein self-association) - - - figure legend:Additional file 2|caution:"The authors state that FIPS5 is 1196 amino acids in length, The Arabidopsis Information Resource (TAIR) databse states FIPS5 is 1197 amino acids in length and UniProt states FIPS5 is 1189 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/12/09 rogid:YODT2u9tim9hGHUjhX4zUMCiMAY3702 rogid:NZI947ceRtnySkR9wFJBDadZbf03702 intact-crc:77C9E5892C40622F|rigid:4cDploavQ3lmuxjd2vHjMih5BGw false sufficient binding region:1-137 - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9C710 uniprotkb:Q9SR06 intact:EBI-1775638|uniprotkb:Q8VZG9|ensemblplants:AT1G66500.1 intact:EBI-1775627|ensemblplants:AT3G04680.1|ensemblplants:AT3G04680.2|ensemblplants:AT3G04680.3 psi-mi:pcfs1_arath(display_long)|uniprotkb:PCFS1(gene name)|psi-mi:PCFS1(display_short)|uniprotkb:F28G11.6(orf name)|uniprotkb:At1g66500(locus name) psi-mi:clp1_arath(display_long)|uniprotkb:CLPS3(gene name)|psi-mi:CLPS3(display_short)|uniprotkb:CLP-like protein 3(gene name synonym)|uniprotkb:Protein CLP-SIMILAR PROTEIN 3(gene name synonym)|uniprotkb:F7O18.15(orf name)|uniprotkb:At3g04680(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776053|imex:IM-19266-46 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_176823.1|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT1G66500(gene)|ensemblplants:AT1G66500.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) interpro:IPR028606|refseq:NP_187119.1|interpro:IPR010655(Pre-mRNA cleavage complex II Clp1)|interpro:IPR032319|interpro:IPR032324|interpro:IPR027417|refseq:NP_001319471.1|refseq:NP_001327497.1|interpro:IPR038238|interpro:IPR038239|ensemblplants:AT3G04680(gene)|ensemblplants:AT3G04680.1(transcript)|ensemblplants:AT3G04680.2(transcript)|ensemblplants:AT3G04680.3(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006388"(tRNA splicing, via endonucleolytic cleavage and ligation)|go:"GO:0006396"(RNA processing)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0010228"(vegetative to reproductive phase transition of meristem)|go:"GO:0048827"(phyllome development)|go:"GO:0051731"(polynucleotide 5'-hydroxyl-kinase activity) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:9IXQFYI3Bn73Mk/h00pzyY6/7Vg3702 rogid:D8cP0TsXbIWqoQgXosPb2476N3E3702 intact-crc:248AA3A5132FF9F4|rigid:gbVX1ze+vLeE9PJnpp4TxgEeuaM false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9SR06 uniprotkb:Q0WPF2 intact:EBI-1775627|ensemblplants:AT3G04680.1|ensemblplants:AT3G04680.2|ensemblplants:AT3G04680.3 intact:EBI-1775648|uniprotkb:Q8GW12|uniprotkb:Q9ZS85|ensemblplants:AT4G04885.1 psi-mi:clp1_arath(display_long)|uniprotkb:CLPS3(gene name)|psi-mi:CLPS3(display_short)|uniprotkb:CLP-like protein 3(gene name synonym)|uniprotkb:Protein CLP-SIMILAR PROTEIN 3(gene name synonym)|uniprotkb:F7O18.15(orf name)|uniprotkb:At3g04680(locus name) psi-mi:pcfs4_arath(display_long)|uniprotkb:PCFS4(gene name)|psi-mi:PCFS4(display_short)|uniprotkb:T4B21.1(orf name)|uniprotkb:At4g04885(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776058|imex:IM-19266-47 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR028606|refseq:NP_187119.1|interpro:IPR010655(Pre-mRNA cleavage complex II Clp1)|interpro:IPR032319|interpro:IPR032324|interpro:IPR027417|refseq:NP_001319471.1|refseq:NP_001327497.1|interpro:IPR038238|interpro:IPR038239|ensemblplants:AT3G04680(gene)|ensemblplants:AT3G04680.1(transcript)|ensemblplants:AT3G04680.2(transcript)|ensemblplants:AT3G04680.3(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006388"(tRNA splicing, via endonucleolytic cleavage and ligation)|go:"GO:0006396"(RNA processing)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0010228"(vegetative to reproductive phase transition of meristem)|go:"GO:0048827"(phyllome development)|go:"GO:0051731"(polynucleotide 5'-hydroxyl-kinase activity) refseq:NP_680598.2|interpro:IPR008942(ENTH/VHS)|interpro:IPR006569(Regulation of nuclear pre-mRNA protein)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT4G04885(gene)|ensemblplants:AT4G04885.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0009911"(positive regulation of flower development)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:D8cP0TsXbIWqoQgXosPb2476N3E3702 rogid:LD6jYf8wDs0FemPagq+iyXJ8/fI3702 intact-crc:02F93B11A1D48B84|rigid:b40Ge8Bn9kaWYcdzbe3iN7XEp68 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9SR06 uniprotkb:Q9FIX8 intact:EBI-1775627|ensemblplants:AT3G04680.1|ensemblplants:AT3G04680.2|ensemblplants:AT3G04680.3 intact:EBI-1775691|ensemblplants:AT5G43620.1 psi-mi:clp1_arath(display_long)|uniprotkb:CLPS3(gene name)|psi-mi:CLPS3(display_short)|uniprotkb:CLP-like protein 3(gene name synonym)|uniprotkb:Protein CLP-SIMILAR PROTEIN 3(gene name synonym)|uniprotkb:F7O18.15(orf name)|uniprotkb:At3g04680(locus name) psi-mi:pcfs5_arath(display_long)|uniprotkb:K9D7.12(orf name)|uniprotkb:At5g43620(locus name)|uniprotkb:PCFS5(gene name)|psi-mi:PCFS5(display_short) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776086|imex:IM-19266-48 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR028606|refseq:NP_187119.1|interpro:IPR010655(Pre-mRNA cleavage complex II Clp1)|interpro:IPR032319|interpro:IPR032324|interpro:IPR027417|refseq:NP_001319471.1|refseq:NP_001327497.1|interpro:IPR038238|interpro:IPR038239|ensemblplants:AT3G04680(gene)|ensemblplants:AT3G04680.1(transcript)|ensemblplants:AT3G04680.2(transcript)|ensemblplants:AT3G04680.3(transcript)|go:"GO:0005524"(ATP binding)|go:"GO:0005634"(nucleus)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006388"(tRNA splicing, via endonucleolytic cleavage and ligation)|go:"GO:0006396"(RNA processing)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0010228"(vegetative to reproductive phase transition of meristem)|go:"GO:0048827"(phyllome development)|go:"GO:0051731"(polynucleotide 5'-hydroxyl-kinase activity) interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|refseq:NP_199175.1|ensemblplants:AT5G43620(gene)|ensemblplants:AT5G43620.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:D8cP0TsXbIWqoQgXosPb2476N3E3702 rogid:7PI7YO6AwghTRqeJSKoQEDcCzYE3702 intact-crc:6A8DC5DFB7CD1D31|rigid:7sBGUVRsAHw814FOHFO76F5sMzg false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q0WPF2 uniprotkb:Q9C710 intact:EBI-1775648|uniprotkb:Q8GW12|uniprotkb:Q9ZS85|ensemblplants:AT4G04885.1 intact:EBI-1775638|uniprotkb:Q8VZG9|ensemblplants:AT1G66500.1 psi-mi:pcfs4_arath(display_long)|uniprotkb:PCFS4(gene name)|psi-mi:PCFS4(display_short)|uniprotkb:T4B21.1(orf name)|uniprotkb:At4g04885(locus name) psi-mi:pcfs1_arath(display_long)|uniprotkb:PCFS1(gene name)|psi-mi:PCFS1(display_short)|uniprotkb:F28G11.6(orf name)|uniprotkb:At1g66500(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776092|imex:IM-19266-49 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_680598.2|interpro:IPR008942(ENTH/VHS)|interpro:IPR006569(Regulation of nuclear pre-mRNA protein)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT4G04885(gene)|ensemblplants:AT4G04885.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0009911"(positive regulation of flower development)|go:"GO:0046872"(metal ion binding) refseq:NP_176823.1|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT1G66500(gene)|ensemblplants:AT1G66500.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LD6jYf8wDs0FemPagq+iyXJ8/fI3702 rogid:9IXQFYI3Bn73Mk/h00pzyY6/7Vg3702 intact-crc:E5CD0C15359B7A29|rigid:DooDikl8wsxQiau+rO8JiCmj5zA false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9C710 uniprotkb:Q9FIX8 intact:EBI-1775638|uniprotkb:Q8VZG9|ensemblplants:AT1G66500.1 intact:EBI-1775691|ensemblplants:AT5G43620.1 psi-mi:pcfs1_arath(display_long)|uniprotkb:PCFS1(gene name)|psi-mi:PCFS1(display_short)|uniprotkb:F28G11.6(orf name)|uniprotkb:At1g66500(locus name) psi-mi:pcfs5_arath(display_long)|uniprotkb:K9D7.12(orf name)|uniprotkb:At5g43620(locus name)|uniprotkb:PCFS5(gene name)|psi-mi:PCFS5(display_short) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776096|imex:IM-19266-50 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_176823.1|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT1G66500(gene)|ensemblplants:AT1G66500.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|refseq:NP_199175.1|ensemblplants:AT5G43620(gene)|ensemblplants:AT5G43620.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:9IXQFYI3Bn73Mk/h00pzyY6/7Vg3702 rogid:7PI7YO6AwghTRqeJSKoQEDcCzYE3702 intact-crc:DB7A235FBABFEBB7|rigid:8cRQMwJ/q4Ed58luMKypvNgTrhA false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q0WPF2 uniprotkb:Q0WPF2 intact:EBI-1775648|uniprotkb:Q8GW12|uniprotkb:Q9ZS85|ensemblplants:AT4G04885.1 intact:EBI-1775648|uniprotkb:Q8GW12|uniprotkb:Q9ZS85|ensemblplants:AT4G04885.1 psi-mi:pcfs4_arath(display_long)|uniprotkb:PCFS4(gene name)|psi-mi:PCFS4(display_short)|uniprotkb:T4B21.1(orf name)|uniprotkb:At4g04885(locus name) psi-mi:pcfs4_arath(display_long)|uniprotkb:PCFS4(gene name)|psi-mi:PCFS4(display_short)|uniprotkb:T4B21.1(orf name)|uniprotkb:At4g04885(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776102|imex:IM-19266-51 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_680598.2|interpro:IPR008942(ENTH/VHS)|interpro:IPR006569(Regulation of nuclear pre-mRNA protein)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT4G04885(gene)|ensemblplants:AT4G04885.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0009911"(positive regulation of flower development)|go:"GO:0046872"(metal ion binding) refseq:NP_680598.2|interpro:IPR008942(ENTH/VHS)|interpro:IPR006569(Regulation of nuclear pre-mRNA protein)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT4G04885(gene)|ensemblplants:AT4G04885.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0009911"(positive regulation of flower development)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:LD6jYf8wDs0FemPagq+iyXJ8/fI3702 rogid:LD6jYf8wDs0FemPagq+iyXJ8/fI3702 intact-crc:C4A794E098AAF9BC|rigid:Z4o0SkRhVn2OUGhy8BgC2+zGt6c false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9FIX8 uniprotkb:Q0WPF2 intact:EBI-1775691|ensemblplants:AT5G43620.1 intact:EBI-1775648|uniprotkb:Q8GW12|uniprotkb:Q9ZS85|ensemblplants:AT4G04885.1 psi-mi:pcfs5_arath(display_long)|uniprotkb:K9D7.12(orf name)|uniprotkb:At5g43620(locus name)|uniprotkb:PCFS5(gene name)|psi-mi:PCFS5(display_short) psi-mi:pcfs4_arath(display_long)|uniprotkb:PCFS4(gene name)|psi-mi:PCFS4(display_short)|uniprotkb:T4B21.1(orf name)|uniprotkb:At4g04885(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776106|imex:IM-19266-52 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|refseq:NP_199175.1|ensemblplants:AT5G43620(gene)|ensemblplants:AT5G43620.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0046872"(metal ion binding) refseq:NP_680598.2|interpro:IPR008942(ENTH/VHS)|interpro:IPR006569(Regulation of nuclear pre-mRNA protein)|interpro:IPR013087(Zinc finger, C2H2-type/integrase, DNA-binding)|ensemblplants:AT4G04885(gene)|ensemblplants:AT4G04885.1(transcript)|go:"GO:0000993"(RNA polymerase II complex binding)|go:"GO:0003729"(mRNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005737"(cytoplasm)|go:"GO:0005849"(mRNA cleavage factor complex)|go:"GO:0006369"(termination of RNA polymerase II transcription)|go:"GO:0006378"(mRNA polyadenylation)|go:"GO:0006397"(mRNA processing)|go:"GO:0009908"(flower development)|go:"GO:0009911"(positive regulation of flower development)|go:"GO:0046872"(metal ion binding) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:7PI7YO6AwghTRqeJSKoQEDcCzYE3702 rogid:LD6jYf8wDs0FemPagq+iyXJ8/fI3702 intact-crc:FD09BBEB084499C7|rigid:1NGoaDIY4BBlrbpj/ibYFZlcODY false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q93VI4 uniprotkb:Q93VI4 intact:EBI-962543|ensemblplants:AT5G51120.1|uniprotkb:Q8LG48|uniprotkb:Q9LU62 intact:EBI-962543|ensemblplants:AT5G51120.1|uniprotkb:Q8LG48|uniprotkb:Q9LU62 psi-mi:pabn1_arath(display_long)|uniprotkb:PABN1(gene name)|psi-mi:PABN1(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 1"(gene name synonym)|uniprotkb:"Poly(A)-binding protein I"(gene name synonym)|uniprotkb:MWD22.6(orf name)|uniprotkb:At5g51120(locus name) psi-mi:pabn1_arath(display_long)|uniprotkb:PABN1(gene name)|psi-mi:PABN1(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 1"(gene name synonym)|uniprotkb:"Poly(A)-binding protein I"(gene name synonym)|uniprotkb:MWD22.6(orf name)|uniprotkb:At5g51120(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776110|imex:IM-19266-53 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G51120(gene)|ensemblplants:AT5G51120.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0016607"(nuclear speck)|refseq:NP_568751.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979 ensemblplants:AT5G51120(gene)|ensemblplants:AT5G51120.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0016607"(nuclear speck)|refseq:NP_568751.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979 - - - figure legend:Additional file 2|caution:"The authors state At5g51120 (PABN1) is 220 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR) database records show it is 227 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:dF29BIJNPKmA87nDpd9/6uf1hC03702 rogid:dF29BIJNPKmA87nDpd9/6uf1hC03702 intact-crc:D460E9BE86809B65|rigid:OT7kudd+8X5eC7clX0x68hWzTfk false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q93VI4 uniprotkb:Q9FJN9 intact:EBI-962543|ensemblplants:AT5G51120.1|uniprotkb:Q8LG48|uniprotkb:Q9LU62 intact:EBI-592121|ensemblplants:AT5G65260.1 psi-mi:pabn1_arath(display_long)|uniprotkb:PABN1(gene name)|psi-mi:PABN1(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 1"(gene name synonym)|uniprotkb:"Poly(A)-binding protein I"(gene name synonym)|uniprotkb:MWD22.6(orf name)|uniprotkb:At5g51120(locus name) psi-mi:pabn2_arath(display_long)|uniprotkb:PABN2(gene name)|psi-mi:PABN2(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 2"(gene name synonym)|uniprotkb:"Poly(A)-binding protein II"(gene name synonym)|uniprotkb:MQN23.20(orf name)|uniprotkb:At5g65260(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776115|imex:IM-19266-54 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) ensemblplants:AT5G51120(gene)|ensemblplants:AT5G51120.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0016607"(nuclear speck)|refseq:NP_568751.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979 refseq:NP_201329.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979|ensemblplants:AT5G65260(gene)|ensemblplants:AT5G65260.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016607"(nuclear speck) - - - figure legend:Additional file 2|caution:"The authors state At5g51120 (PABN1) is 220 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR) database records show it is 227 amino acids in length."|caution:"The authors state At5g65260 (PABN2) is 227 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR) database records show it is 220 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:dF29BIJNPKmA87nDpd9/6uf1hC03702 rogid:R0Jqu41wMmmiD4tnNHFM1Buf/Dw3702 intact-crc:832BA21B9EC5174A|rigid:302gqQnIKMhUuMgOKxkatKo36Xs false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9LX90 uniprotkb:Q93VI4 intact:EBI-1775745|uniprotkb:F4KGU0|uniprotkb:F4KGU1|ensemblplants:AT5G10350.1 intact:EBI-962543|ensemblplants:AT5G51120.1|uniprotkb:Q8LG48|uniprotkb:Q9LU62 psi-mi:pabn3_arath(display_long)|uniprotkb:PABN3(gene name)|psi-mi:PABN3(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 3"(gene name synonym)|uniprotkb:"Poly(A)-binding protein III"(gene name synonym)|uniprotkb:F12B17.300(orf name)|uniprotkb:At5g10350(locus name) psi-mi:pabn1_arath(display_long)|uniprotkb:PABN1(gene name)|psi-mi:PABN1(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 1"(gene name synonym)|uniprotkb:"Poly(A)-binding protein I"(gene name synonym)|uniprotkb:MWD22.6(orf name)|uniprotkb:At5g51120(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776129|imex:IM-19266-55 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_196597.1|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_850803.1|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT5G10350(gene)|ensemblplants:AT5G10350.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005774"(vacuolar membrane)|go:"GO:0008143"("poly(A) binding")|go:"GO:0016607"(nuclear speck)|go:"GO:0043621"(protein self-association) ensemblplants:AT5G51120(gene)|ensemblplants:AT5G51120.1(transcript)|go:"GO:0003723"(RNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0016607"(nuclear speck)|refseq:NP_568751.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979 - - - figure legend:Additional file 2|caution:"The authors state At5g51120 (PABN1) is 220 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR) database records show it is 227 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:NZI947ceRtnySkR9wFJBDadZbf03702 rogid:dF29BIJNPKmA87nDpd9/6uf1hC03702 intact-crc:5797A3A09D33568D|rigid:MuVN8xX/HEgWekgN4QECdiO51t0 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9FJN9 uniprotkb:Q9FJN9 intact:EBI-592121|ensemblplants:AT5G65260.1 intact:EBI-592121|ensemblplants:AT5G65260.1 psi-mi:pabn2_arath(display_long)|uniprotkb:PABN2(gene name)|psi-mi:PABN2(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 2"(gene name synonym)|uniprotkb:"Poly(A)-binding protein II"(gene name synonym)|uniprotkb:MQN23.20(orf name)|uniprotkb:At5g65260(locus name) psi-mi:pabn2_arath(display_long)|uniprotkb:PABN2(gene name)|psi-mi:PABN2(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 2"(gene name synonym)|uniprotkb:"Poly(A)-binding protein II"(gene name synonym)|uniprotkb:MQN23.20(orf name)|uniprotkb:At5g65260(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776134|imex:IM-19266-56 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0496"(bait) psi-mi:"MI:0498"(prey) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_201329.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979|ensemblplants:AT5G65260(gene)|ensemblplants:AT5G65260.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016607"(nuclear speck) refseq:NP_201329.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979|ensemblplants:AT5G65260(gene)|ensemblplants:AT5G65260.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016607"(nuclear speck) - - - figure legend:Additional file 2|caution:"The authors state At5g65260 (PABN2) is 227 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR) database records show it is 220 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:R0Jqu41wMmmiD4tnNHFM1Buf/Dw3702 rogid:R0Jqu41wMmmiD4tnNHFM1Buf/Dw3702 intact-crc:F5F48D22CBBE97A7|rigid:4Hi3t/71CxnQVTnyIaFACvUt5r8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9LX90 uniprotkb:Q9FJN9 intact:EBI-1775745|uniprotkb:F4KGU0|uniprotkb:F4KGU1|ensemblplants:AT5G10350.1 intact:EBI-592121|ensemblplants:AT5G65260.1 psi-mi:pabn3_arath(display_long)|uniprotkb:PABN3(gene name)|psi-mi:PABN3(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 3"(gene name synonym)|uniprotkb:"Poly(A)-binding protein III"(gene name synonym)|uniprotkb:F12B17.300(orf name)|uniprotkb:At5g10350(locus name) psi-mi:pabn2_arath(display_long)|uniprotkb:PABN2(gene name)|psi-mi:PABN2(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 2"(gene name synonym)|uniprotkb:"Poly(A)-binding protein II"(gene name synonym)|uniprotkb:MQN23.20(orf name)|uniprotkb:At5g65260(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776139|imex:IM-19266-57 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_196597.1|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_850803.1|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT5G10350(gene)|ensemblplants:AT5G10350.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005774"(vacuolar membrane)|go:"GO:0008143"("poly(A) binding")|go:"GO:0016607"(nuclear speck)|go:"GO:0043621"(protein self-association) refseq:NP_201329.1|interpro:IPR000504(RNA recognition motif, RNP-1)|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|interpro:IPR035979|ensemblplants:AT5G65260(gene)|ensemblplants:AT5G65260.1(transcript)|go:"GO:0003729"(mRNA binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0016607"(nuclear speck) - - - figure legend:Additional file 2|caution:"The authors state At5g65260 (PABN2) is 227 amino acids in length , however both UniProt and The Arabidopsis Information Resource (TAIR) database records show it is 220 amino acids in length."|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:NZI947ceRtnySkR9wFJBDadZbf03702 rogid:R0Jqu41wMmmiD4tnNHFM1Buf/Dw3702 intact-crc:FC8B9F883B4A2E12|rigid:Q4N7NG61TlcDsF337crth0GBJi8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant) uniprotkb:Q9LX90 uniprotkb:Q9LX90 intact:EBI-1775745|uniprotkb:F4KGU0|uniprotkb:F4KGU1|ensemblplants:AT5G10350.1 intact:EBI-1775745|uniprotkb:F4KGU0|uniprotkb:F4KGU1|ensemblplants:AT5G10350.1 psi-mi:pabn3_arath(display_long)|uniprotkb:PABN3(gene name)|psi-mi:PABN3(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 3"(gene name synonym)|uniprotkb:"Poly(A)-binding protein III"(gene name synonym)|uniprotkb:F12B17.300(orf name)|uniprotkb:At5g10350(locus name) psi-mi:pabn3_arath(display_long)|uniprotkb:PABN3(gene name)|psi-mi:PABN3(display_short)|uniprotkb:"Nuclear poly(A)-binding protein 3"(gene name synonym)|uniprotkb:"Poly(A)-binding protein III"(gene name synonym)|uniprotkb:F12B17.300(orf name)|uniprotkb:At5g10350(locus name) psi-mi:"MI:0018"(two hybrid) Hunt et al. (2008) pubmed:18479511|imex:IM-19266 taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)") psi-mi:"MI:0915"(physical association) psi-mi:"MI:0469"(IntAct) intact:EBI-1776144|imex:IM-19266-58 - - psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0499"(unspecified role) psi-mi:"MI:0498"(prey) psi-mi:"MI:0496"(bait) psi-mi:"MI:0326"(protein) psi-mi:"MI:0326"(protein) refseq:NP_196597.1|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_850803.1|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT5G10350(gene)|ensemblplants:AT5G10350.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005774"(vacuolar membrane)|go:"GO:0008143"("poly(A) binding")|go:"GO:0016607"(nuclear speck)|go:"GO:0043621"(protein self-association) refseq:NP_196597.1|interpro:IPR000504(RNA recognition motif, RNP-1)|refseq:NP_850803.1|interpro:IPR035979|interpro:IPR012677(Nucleotide-binding, alpha-beta plait)|ensemblplants:AT5G10350(gene)|ensemblplants:AT5G10350.1(transcript)|go:"GO:0005634"(nucleus)|go:"GO:0005774"(vacuolar membrane)|go:"GO:0008143"("poly(A) binding")|go:"GO:0016607"(nuclear speck)|go:"GO:0043621"(protein self-association) - - - figure legend:Additional file 2|full coverage:Only protein-protein interactions|curation depth:imex curation taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)") - 2008/05/20 2014/10/16 rogid:NZI947ceRtnySkR9wFJBDadZbf03702 rogid:NZI947ceRtnySkR9wFJBDadZbf03702 intact-crc:4A2EE0DE98C0CC78|rigid:AiTnGUmaCb07gTjdvKKd6Bg/OK8 false - - - - psi-mi:"MI:0396"(predetermined participant) psi-mi:"MI:0396"(predetermined participant)