#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:P53859	uniprotkb:Q08491	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1389|ensemblfungi:YOR076C|uniprotkb:O00032|uniprotkb:D6W2D9	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:ski7_yeast(display_long)|uniprotkb:SKI7(gene name)|psi-mi:SKI7(display_short)|uniprotkb:YOR29-27(orf name)|uniprotkb:YOR076C(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	ensemblfungi:YOR076C(gene)|ensemblfungi:YOR076C_mRNA(transcript)|go:"GO:0003746"(translation elongation factor activity)|go:"GO:0003924"(GTPase activity)|go:"GO:0005525"(GTP binding)|go:"GO:0005737"(cytoplasm)|go:"GO:0005829"(cytosol)|go:"GO:0006412"(translation)|go:"GO:0006414"(translational elongation)|go:"GO:0030163"(protein catabolic process)|go:"GO:0030674"(protein-macromolecule adaptor activity)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|interpro:IPR000795(Protein synthesis factor, GTP-binding)|interpro:IPR027417|rcsb pdb:4ZKD|rcsb pdb:4ZKE|rcsb pdb:5G06|rcsb pdb:5JEA|refseq:NP_014719.1|sgd:S000005602|dip:DIP-995N|mint:Q08491	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:D93B956D02050BFA	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:lSRCPXKyO8g/c9UBMPr/zgCwS84559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n|O-phospho-L-serine:307-307|O-phospho-L-serine:88-88|O-phospho-L-serine:90-90	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:P38801	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1909|uniprotkb:D3DL32|ensemblfungi:YHR081W	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:lrp1_yeast(display_long)|uniprotkb:LRP1(gene name)|psi-mi:LRP1(display_short)|uniprotkb:Like an rRNA processing protein 1(gene name synonym)|uniprotkb:rRNA processing protein 47(gene name synonym)|uniprotkb:RRP47(gene name synonym)|uniprotkb:YC1D(gene name synonym)|uniprotkb:Yeast C1D domain-containing protein(gene name synonym)|uniprotkb:YHR081W(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_011949.1|sgd:S000001123|dip:DIP-4359N|mint:P38801|ensemblfungi:YHR081W(gene)|ensemblfungi:YHR081W_mRNA(transcript)|go:"GO:0000178"("exosome (RNase complex)")|go:"GO:0000460"(maturation of 5.8S rRNA)|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0000973"(posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery)|go:"GO:0003677"(DNA binding)|go:"GO:0003690"(double-stranded DNA binding)|go:"GO:0003723"(RNA binding)|go:"GO:0003725"(double-stranded RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0010468"(regulation of gene expression)|go:"GO:0030234"(enzyme regulator activity)|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0034476"(U5 snRNA 3'-end processing)|go:"GO:0044877"(protein-containing complex binding)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071033"|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071039"(nuclear polyadenylation-dependent CUT catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|go:"GO:1901917"(regulation of exoribonuclease activity)|interpro:IPR007146(Small-subunit processome, Utp3)|interpro:IPR011082(Exosome-associated factor Rrp47/DNA strand repair C1D)|rcsb pdb:4WFC|rcsb pdb:4WFD|rcsb pdb:5C0W|rcsb pdb:6FSZ|rcsb pdb:6FT6|rcsb pdb:6LQS|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:27D00668C296CC9A	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:cQaT2zPsTCZHkLjuYBNF012Ym38559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	-	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:P53256	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1842|uniprotkb:Q6TQU1|uniprotkb:D6VUM7|ensemblfungi:YGR095C	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp46_yeast(display_long)|uniprotkb:RRP46(gene name)|psi-mi:RRP46(display_short)|uniprotkb:Ribosomal RNA-processing protein 46(gene name synonym)|uniprotkb:YGR095C(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_011609.2|sgd:S000003327|dip:DIP-6838N|mint:P53256|ensemblfungi:YGR095C(gene)|ensemblfungi:YGR095C_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR015847(Exoribonuclease, phosphorolytic domain 2)|interpro:IPR020568|interpro:IPR027408|interpro:IPR036345|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:F1307E0EE4FC3133	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:2ESxObCiXUjTEvlB5ow7eCgivz0559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	sufficient binding region:?-?|O-phospho-L-serine:?-?	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:Q12149	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1782|uniprotkb:Q6B280|uniprotkb:D6W267|ensemblfungi:YOR001W	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp6_yeast(display_long)|uniprotkb:RRP6(gene name)|psi-mi:RRP6(display_short)|uniprotkb:UNC733(gene name synonym)|uniprotkb:Ribosomal RNA-processing protein 6(gene name synonym)|uniprotkb:YOR001W(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_014643.1|sgd:S000005527|dip:DIP-4560N|ensemblfungi:YOR001W(gene)|ensemblfungi:YOR001W_mRNA(transcript)|go:"GO:0000166"(nucleotide binding)|go:"GO:0000175"(3'-5'-exoribonuclease activity)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0000973"(posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery)|go:"GO:0003727"(single-stranded RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0034473"(U1 snRNA 3'-end processing)|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0034476"(U5 snRNA 3'-end processing)|go:"GO:0042134"(rRNA primary transcript binding)|go:"GO:0071028"(nuclear mRNA surveillance)|mint:Q12149|go:"GO:0071033"|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071036"(nuclear polyadenylation-dependent snoRNA catabolic process)|go:"GO:0071037"(nuclear polyadenylation-dependent snRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071039"(nuclear polyadenylation-dependent CUT catabolic process)|go:"GO:0071040"(nuclear polyadenylation-dependent antisense transcript catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071044"(histone mRNA catabolic process)|go:"GO:0071048"|go:"GO:0071049"|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR002121(Helicase and RNase D C-terminal, HRDC)|interpro:IPR002562(3'-5' exonuclease)|interpro:IPR010997(HRDC-like)|interpro:IPR012337(Polynucleotidyl transferase, Ribonuclease H fold)|interpro:IPR012588(Exosome-associated factor Rrp6, N-terminal)|interpro:IPR036397|rcsb pdb:1M0Y|rcsb pdb:2HBJ|rcsb pdb:2HBK|rcsb pdb:2HBL|rcsb pdb:2HBM|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:4WFC|rcsb pdb:4WFD|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5C0Y|rcsb pdb:5K36|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6FT6|rcsb pdb:6LQS|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:B19A0B2ED74C6DA7	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:29oQaOEcqYSzOIn7B6hj29GvisU559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n|O-phospho-L-threonine:520-520	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:P38792	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1757|uniprotkb:D3DL18|ensemblfungi:YHR069C	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp4_yeast(display_long)|uniprotkb:RRP4(gene name)|psi-mi:RRP4(display_short)|uniprotkb:Ribosomal RNA-processing protein 4(gene name synonym)|uniprotkb:YHR069C(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_011936.1|sgd:S000001111|dip:DIP-5888N|mint:P38792|ensemblfungi:YHR069C(gene)|ensemblfungi:YHR069C_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000178"("exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0043928"(exonucleolytic catabolism of deadenylated mRNA)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071034"(CUT catabolic process)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071049"|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR004088(K Homology, type 1)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR025721|interpro:IPR026699|interpro:IPR036612|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:0718A7ABF42E9B9B	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:ZgBS9xjR7jC96sAb0m63ElPvM7M559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n|O-phospho-L-serine:152-152	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:P25359	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1773|uniprotkb:Q8NKJ5|ensemblfungi:YCR035C|uniprotkb:D6VR45	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp43_yeast(display_long)|uniprotkb:RRP43(gene name)|psi-mi:RRP43(display_short)|uniprotkb:YCR035C(locus name)|uniprotkb:YCR35C(orf name)|uniprotkb:YCR522(orf name)|uniprotkb:Ribosomal RNA-processing protein 43(gene name synonym)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	ensemblfungi:YCR035C(gene)|ensemblfungi:YCR035C_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005654"(nucleoplasm)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0006402"(mRNA catabolic process)|go:"GO:0016072"(rRNA metabolic process)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034473"(U1 snRNA 3'-end processing)|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0034476"(U5 snRNA 3'-end processing)|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0043928"(exonucleolytic catabolism of deadenylated mRNA)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|refseq:NP_009964.2|sgd:S000000631|dip:DIP-5485N|mint:P25359|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR020568|interpro:IPR027408|interpro:IPR033196|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:8801837B8184134D	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:htGDTlKKMq7OdwcfGUKgfWCjJ1k559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n|O-phospho-L-threonine:146-146|O-phospho-L-serine:26-26	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:P46948	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1788|uniprotkb:D6VUX7|ensemblfungi:YGR195W	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp41_yeast(display_long)|uniprotkb:SKI6(gene name)|psi-mi:SKI6(display_short)|uniprotkb:YGR195W(locus name)|uniprotkb:G7587(orf name)|uniprotkb:ECM20(gene name synonym)|uniprotkb:Ribosomal RNA-processing protein 41(gene name synonym)|uniprotkb:Superkiller protein 6(gene name synonym)|uniprotkb:Extracellular mutant protein 20(gene name synonym)|uniprotkb:RRP41(gene name synonym)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	sgd:S000003427|refseq:NP_011711.3|dip:DIP-2083N|mint:P46948|ensemblfungi:YGR195W(gene)|ensemblfungi:YGR195W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034473"(U1 snRNA 3'-end processing)|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0034476"(U5 snRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071039"(nuclear polyadenylation-dependent CUT catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR015847(Exoribonuclease, phosphorolytic domain 2)|interpro:IPR020568|interpro:IPR027408|interpro:IPR036345|rcsb pdb:2WP8|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:C80EFFB528A43044	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:I7vEo0EUB1jZO+3v12H0LwVbgmo559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:Q12277	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1765|uniprotkb:D6VRN9|ensemblfungi:YDL111C	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp42_yeast(display_long)|uniprotkb:RRP42(gene name)|psi-mi:RRP42(display_short)|uniprotkb:Ribosomal RNA-processing protein 42(gene name synonym)|uniprotkb:YDL111C(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_010172.1|sgd:S000002269|dip:DIP-1463N|mint:Q12277|ensemblfungi:YDL111C(gene)|ensemblfungi:YDL111C_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034473"(U1 snRNA 3'-end processing)|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0034476"(U5 snRNA 3'-end processing)|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0043928"(exonucleolytic catabolism of deadenylated mRNA)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR020568|interpro:IPR027408|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:806C60979642C67E	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:OVyAr6b3ECMjQj3nUsuxXZqxt1o559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:P48240	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1749|uniprotkb:D6VUT8|ensemblfungi:YGR158C	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:mtr3_yeast(display_long)|uniprotkb:MTR3(gene name)|psi-mi:MTR3(display_short)|uniprotkb:YGR158C(locus name)|uniprotkb:G6676(orf name)|uniprotkb:mRNA transport regulator 3(gene name synonym)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	sgd:S000003390|refseq:NP_011674.3|dip:DIP-931N|mint:P48240|ensemblfungi:YGR158C(gene)|ensemblfungi:YGR158C_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071039"(nuclear polyadenylation-dependent CUT catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR020568|interpro:IPR027408|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:2FA07ABB4A1115E0	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:t5M0E3avqoJ0dbM51kE3fZlz2pc559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n|O-phospho-L-serine:243-243|O-phospho-L-threonine:36-36	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:Q05636	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1810|uniprotkb:D6VSR0|ensemblfungi:YDR280W	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp45_yeast(display_long)|uniprotkb:RRP45(gene name)|psi-mi:RRP45(display_short)|uniprotkb:YDR280W(locus name)|uniprotkb:D9954.1(orf name)|uniprotkb:Ribosomal RNA-processing protein 45(gene name synonym)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_010566.1|sgd:S000002688|dip:DIP-2084N|mint:Q05636|ensemblfungi:YDR280W(gene)|ensemblfungi:YDR280W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034473"(U1 snRNA 3'-end processing)|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0034476"(U5 snRNA 3'-end processing)|go:"GO:0043928"(exonucleolytic catabolism of deadenylated mRNA)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR015847(Exoribonuclease, phosphorolytic domain 2)|interpro:IPR020568|interpro:IPR027408|interpro:IPR033100|interpro:IPR036345|rcsb pdb:2WP8|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:65C9DB5A63678F2D	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:LCdt9Nm8j2AD6iecBI2CGCrhEhQ559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:Q08285	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1831|ensemblfungi:YOL142W|uniprotkb:D6W1S7|uniprotkb:E9P8Z4	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp40_yeast(display_long)|uniprotkb:RRP40(gene name)|psi-mi:RRP40(display_short)|uniprotkb:Ribosomal RNA-processing protein 40(gene name synonym)|uniprotkb:YOL142W(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_014499.2|sgd:S000005502|ensemblfungi:YOL142W(gene)|ensemblfungi:YOL142W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000178"("exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0030145"(manganese ion binding)|dip:DIP-5330N|mint:Q08285|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0043928"(exonucleolytic catabolism of deadenylated mRNA)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071034"(CUT catabolic process)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071049"|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR004088(K Homology, type 1)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR026699|interpro:IPR036612|interpro:IPR037319|interpro:IPR041054|rcsb pdb:2JA9|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:62B3A30348BBAA7C	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:3sdpWE2qP6cVgcD2b8VDWV0ox4g559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:Q08162	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1740|uniprotkb:D6W244|ensemblfungi:YOL021C	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp44_yeast(display_long)|uniprotkb:DIS3(gene name)|psi-mi:DIS3(display_short)|uniprotkb:Ribosomal RNA-processing protein 44(gene name synonym)|uniprotkb:Chromosome disjunction protein 3(gene name synonym)|uniprotkb:RRP44(gene name synonym)|uniprotkb:O2197(orf name)|uniprotkb:YOL021C(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1008933	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	sgd:S000005381|refseq:NP_014621.1|dip:DIP-2355N|mint:Q08162|ensemblfungi:YOL021C(gene)|ensemblfungi:YOL021C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0000175"(3'-5'-exoribonuclease activity)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000178"("exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005739"(mitochondrion)|go:"GO:0006397"(mRNA processing)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071039"(nuclear polyadenylation-dependent CUT catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR002716(PilT protein, N-terminal)|interpro:IPR003029(S1, RNA binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|interpro:IPR022967|interpro:IPR029060|interpro:IPR033770|interpro:IPR033771|interpro:IPR041505|rcsb pdb:2VNU|rcsb pdb:2WP8|rcsb pdb:4IFD|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:00DD31BD2D6904F4	figure legend:2, Table 1 and 2, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:YpToZNRenOPYsPJdGKEWBLsc4zA559292	intact-crc:B3D9CD148C68E542|rigid:bSk5EThcFuJKc//z5FhjJF5ZXkM	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:P46948	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1788|uniprotkb:D6VUX7|ensemblfungi:YGR195W	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp41_yeast(display_long)|uniprotkb:SKI6(gene name)|psi-mi:SKI6(display_short)|uniprotkb:YGR195W(locus name)|uniprotkb:G7587(orf name)|uniprotkb:ECM20(gene name synonym)|uniprotkb:Ribosomal RNA-processing protein 41(gene name synonym)|uniprotkb:Superkiller protein 6(gene name synonym)|uniprotkb:Extracellular mutant protein 20(gene name synonym)|uniprotkb:RRP41(gene name synonym)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1009086	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	sgd:S000003427|refseq:NP_011711.3|dip:DIP-2083N|mint:P46948|ensemblfungi:YGR195W(gene)|ensemblfungi:YGR195W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034473"(U1 snRNA 3'-end processing)|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0034476"(U5 snRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071039"(nuclear polyadenylation-dependent CUT catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR015847(Exoribonuclease, phosphorolytic domain 2)|interpro:IPR020568|interpro:IPR027408|interpro:IPR036345|rcsb pdb:2WP8|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:C80EFFB528A43044	figure legend:3B, Table II, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46|comment:In this experiment thay did not detect Rrp6, Ski7, Lrp1, Rrp4 and Rrp43, which were deteceted in the LC MS-MS experiment.|caution:These proteins were identified as being the same as those in the LS MS-MS identification of the components of the exosome complexes only by comparison of their determined mass with the mass predicted on the basis of the LS MS-MS experiment.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:I7vEo0EUB1jZO+3v12H0LwVbgmo559292	intact-crc:9339F261EC3FC473|rigid:syB9qUoEE9a+aimvQplHt+JaGM0	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:P53256	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1842|uniprotkb:Q6TQU1|uniprotkb:D6VUM7|ensemblfungi:YGR095C	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp46_yeast(display_long)|uniprotkb:RRP46(gene name)|psi-mi:RRP46(display_short)|uniprotkb:Ribosomal RNA-processing protein 46(gene name synonym)|uniprotkb:YGR095C(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1009086	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_011609.2|sgd:S000003327|dip:DIP-6838N|mint:P53256|ensemblfungi:YGR095C(gene)|ensemblfungi:YGR095C_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR015847(Exoribonuclease, phosphorolytic domain 2)|interpro:IPR020568|interpro:IPR027408|interpro:IPR036345|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:F1307E0EE4FC3133	figure legend:3B, Table II, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46|comment:In this experiment thay did not detect Rrp6, Ski7, Lrp1, Rrp4 and Rrp43, which were deteceted in the LC MS-MS experiment.|caution:These proteins were identified as being the same as those in the LS MS-MS identification of the components of the exosome complexes only by comparison of their determined mass with the mass predicted on the basis of the LS MS-MS experiment.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:2ESxObCiXUjTEvlB5ow7eCgivz0559292	intact-crc:9339F261EC3FC473|rigid:syB9qUoEE9a+aimvQplHt+JaGM0	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	sufficient binding region:?-?|O-phospho-L-serine:?-?	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:Q12277	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1765|uniprotkb:D6VRN9|ensemblfungi:YDL111C	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp42_yeast(display_long)|uniprotkb:RRP42(gene name)|psi-mi:RRP42(display_short)|uniprotkb:Ribosomal RNA-processing protein 42(gene name synonym)|uniprotkb:YDL111C(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1009086	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_010172.1|sgd:S000002269|dip:DIP-1463N|mint:Q12277|ensemblfungi:YDL111C(gene)|ensemblfungi:YDL111C_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034473"(U1 snRNA 3'-end processing)|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0034476"(U5 snRNA 3'-end processing)|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0043928"(exonucleolytic catabolism of deadenylated mRNA)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR020568|interpro:IPR027408|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:806C60979642C67E	figure legend:3B, Table II, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46|comment:In this experiment thay did not detect Rrp6, Ski7, Lrp1, Rrp4 and Rrp43, which were deteceted in the LC MS-MS experiment.|caution:These proteins were identified as being the same as those in the LS MS-MS identification of the components of the exosome complexes only by comparison of their determined mass with the mass predicted on the basis of the LS MS-MS experiment.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:OVyAr6b3ECMjQj3nUsuxXZqxt1o559292	intact-crc:9339F261EC3FC473|rigid:syB9qUoEE9a+aimvQplHt+JaGM0	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:P48240	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1749|uniprotkb:D6VUT8|ensemblfungi:YGR158C	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:mtr3_yeast(display_long)|uniprotkb:MTR3(gene name)|psi-mi:MTR3(display_short)|uniprotkb:YGR158C(locus name)|uniprotkb:G6676(orf name)|uniprotkb:mRNA transport regulator 3(gene name synonym)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1009086	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	sgd:S000003390|refseq:NP_011674.3|dip:DIP-931N|mint:P48240|ensemblfungi:YGR158C(gene)|ensemblfungi:YGR158C_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071039"(nuclear polyadenylation-dependent CUT catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR020568|interpro:IPR027408|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:2FA07ABB4A1115E0	figure legend:3B, Table II, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46|comment:In this experiment thay did not detect Rrp6, Ski7, Lrp1, Rrp4 and Rrp43, which were deteceted in the LC MS-MS experiment.|caution:These proteins were identified as being the same as those in the LS MS-MS identification of the components of the exosome complexes only by comparison of their determined mass with the mass predicted on the basis of the LS MS-MS experiment.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:t5M0E3avqoJ0dbM51kE3fZlz2pc559292	intact-crc:9339F261EC3FC473|rigid:syB9qUoEE9a+aimvQplHt+JaGM0	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n|O-phospho-L-serine:243-243|O-phospho-L-threonine:36-36	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:Q05636	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1810|uniprotkb:D6VSR0|ensemblfungi:YDR280W	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp45_yeast(display_long)|uniprotkb:RRP45(gene name)|psi-mi:RRP45(display_short)|uniprotkb:YDR280W(locus name)|uniprotkb:D9954.1(orf name)|uniprotkb:Ribosomal RNA-processing protein 45(gene name synonym)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1009086	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_010566.1|sgd:S000002688|dip:DIP-2084N|mint:Q05636|ensemblfungi:YDR280W(gene)|ensemblfungi:YDR280W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034473"(U1 snRNA 3'-end processing)|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0034476"(U5 snRNA 3'-end processing)|go:"GO:0043928"(exonucleolytic catabolism of deadenylated mRNA)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001247(Exoribonuclease, phosphorolytic domain 1)|interpro:IPR015847(Exoribonuclease, phosphorolytic domain 2)|interpro:IPR020568|interpro:IPR027408|interpro:IPR033100|interpro:IPR036345|rcsb pdb:2WP8|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:65C9DB5A63678F2D	figure legend:3B, Table II, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46|comment:In this experiment thay did not detect Rrp6, Ski7, Lrp1, Rrp4 and Rrp43, which were deteceted in the LC MS-MS experiment.|caution:These proteins were identified as being the same as those in the LS MS-MS identification of the components of the exosome complexes only by comparison of their determined mass with the mass predicted on the basis of the LS MS-MS experiment.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:LCdt9Nm8j2AD6iecBI2CGCrhEhQ559292	intact-crc:9339F261EC3FC473|rigid:syB9qUoEE9a+aimvQplHt+JaGM0	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:Q08285	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1831|ensemblfungi:YOL142W|uniprotkb:D6W1S7|uniprotkb:E9P8Z4	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp40_yeast(display_long)|uniprotkb:RRP40(gene name)|psi-mi:RRP40(display_short)|uniprotkb:Ribosomal RNA-processing protein 40(gene name synonym)|uniprotkb:YOL142W(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1009086	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	refseq:NP_014499.2|sgd:S000005502|ensemblfungi:YOL142W(gene)|ensemblfungi:YOL142W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000178"("exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005730"(nucleolus)|go:"GO:0030145"(manganese ion binding)|dip:DIP-5330N|mint:Q08285|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0034475"(U4 snRNA 3'-end processing)|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0043928"(exonucleolytic catabolism of deadenylated mRNA)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071034"(CUT catabolic process)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071049"|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR004088(K Homology, type 1)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR026699|interpro:IPR036612|interpro:IPR037319|interpro:IPR041054|rcsb pdb:2JA9|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:62B3A30348BBAA7C	figure legend:3B, Table II, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46|comment:In this experiment thay did not detect Rrp6, Ski7, Lrp1, Rrp4 and Rrp43, which were deteceted in the LC MS-MS experiment.|caution:These proteins were identified as being the same as those in the LS MS-MS identification of the components of the exosome complexes only by comparison of their determined mass with the mass predicted on the basis of the LS MS-MS experiment.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:3sdpWE2qP6cVgcD2b8VDWV0ox4g559292	intact-crc:9339F261EC3FC473|rigid:syB9qUoEE9a+aimvQplHt+JaGM0	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)
uniprotkb:P53859	uniprotkb:Q08162	intact:EBI-1731|uniprotkb:D6W0W0|ensemblfungi:YNL232W	intact:EBI-1740|uniprotkb:D6W244|ensemblfungi:YOL021C	psi-mi:csl4_yeast(display_long)|uniprotkb:CSL4(gene name)|psi-mi:CSL4(display_short)|uniprotkb:YNL232W(locus name)|uniprotkb:N1154(orf name)|uniprotkb:SKI4(gene name synonym)|uniprotkb:CEP1 synthetic lethal protein 4(gene name synonym)	psi-mi:rrp44_yeast(display_long)|uniprotkb:DIS3(gene name)|psi-mi:DIS3(display_short)|uniprotkb:Ribosomal RNA-processing protein 44(gene name synonym)|uniprotkb:Chromosome disjunction protein 3(gene name synonym)|uniprotkb:RRP44(gene name synonym)|uniprotkb:O2197(orf name)|uniprotkb:YOL021C(locus name)	psi-mi:"MI:0676"(tandem affinity purification)	Synowsky et al. (2006)	pubmed:16829593	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	taxid:559292(yeast)|taxid:559292(Saccharomyces cerevisiae)	psi-mi:"MI:0914"(association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-1009086	-	psi-mi:"MI:1060"(spoke expansion)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	sgd:S000005176|refseq:NP_014167.1|dip:DIP-6785N|mint:P53859|ensemblfungi:YNL232W(gene)|ensemblfungi:YNL232W_mRNA(transcript)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0003723"(RNA binding)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005737"(cytoplasm)|go:"GO:0006397"(mRNA processing)|go:"GO:0034427"(nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR019495|interpro:IPR039771|rcsb pdb:4IFD|rcsb pdb:4OO1|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5OKZ|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513|reactome:R-SCE-6791226	sgd:S000005381|refseq:NP_014621.1|dip:DIP-2355N|mint:Q08162|ensemblfungi:YOL021C(gene)|ensemblfungi:YOL021C_mRNA(transcript)|go:"GO:0000049"(tRNA binding)|go:"GO:0000175"(3'-5'-exoribonuclease activity)|go:"GO:0000176"("nuclear exosome (RNase complex)")|go:"GO:0000177"("cytoplasmic exosome (RNase complex)")|go:"GO:0000178"("exosome (RNase complex)")|go:"GO:0000467"("exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)")|go:"GO:0004519"(endonuclease activity)|go:"GO:0004521"(endoribonuclease activity)|go:"GO:0005634"(nucleus)|go:"GO:0005730"(nucleolus)|go:"GO:0005739"(mitochondrion)|go:"GO:0006397"(mRNA processing)|go:"GO:0016075"(rRNA catabolic process)|go:"GO:0043628"(ncRNA 3'-end processing)|go:"GO:0070478"(nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay)|go:"GO:0070481"(nuclear-transcribed mRNA catabolic process, non-stop decay)|go:"GO:0070651"(nonfunctional rRNA decay)|go:"GO:0071028"(nuclear mRNA surveillance)|go:"GO:0071035"(nuclear polyadenylation-dependent rRNA catabolic process)|go:"GO:0071038"(nuclear polyadenylation-dependent tRNA catabolic process)|go:"GO:0071039"(nuclear polyadenylation-dependent CUT catabolic process)|go:"GO:0071042"(nuclear polyadenylation-dependent mRNA catabolic process)|go:"GO:0071051"(polyadenylation-dependent snoRNA 3'-end processing)|interpro:IPR001900(Ribonuclease II and R)|interpro:IPR002716(PilT protein, N-terminal)|interpro:IPR003029(S1, RNA binding)|interpro:IPR012340(Nucleic acid-binding, OB-fold)|interpro:IPR022966|interpro:IPR022967|interpro:IPR029060|interpro:IPR033770|interpro:IPR033771|interpro:IPR041505|rcsb pdb:2VNU|rcsb pdb:2WP8|rcsb pdb:4IFD|rcsb pdb:5C0W|rcsb pdb:5C0X|rcsb pdb:5G06|rcsb pdb:5JEA|rcsb pdb:5K36|rcsb pdb:5VZJ|rcsb pdb:6FSZ|rcsb pdb:6LQS|rcsb pdb:7AJT|rcsb pdb:7AJU|reactome:R-SCE-429958|reactome:R-SCE-450385|reactome:R-SCE-450513	go:"GO:0016070"(RNA metabolic process)	crc64:52D3416EA183583B	crc64:00DD31BD2D6904F4	figure legend:3B, Table II, Supp. table 1|comment:All proteins except Mtr3 lacked the N-terminal methionine residue.|comment:The data suggest that the purified exosome complexes contained only the short form of Rrp46|comment:In this experiment thay did not detect Rrp6, Ski7, Lrp1, Rrp4 and Rrp43, which were deteceted in the LC MS-MS experiment.|caution:These proteins were identified as being the same as those in the LS MS-MS identification of the components of the exosome complexes only by comparison of their determined mass with the mass predicted on the basis of the LS MS-MS experiment.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2006/09/12	2014/10/16	rogid:pXrzOxfgb4fz6zCg/ZX8/gNjTvE559292	rogid:YpToZNRenOPYsPJdGKEWBLsc4zA559292	intact-crc:9339F261EC3FC473|rigid:syB9qUoEE9a+aimvQplHt+JaGM0	false	calmodulin binding peptide plus protein a tag:c-c|monoacetylated residue:n-n|O-phospho-L-serine:94-94	monoacetylated residue:n-n	-	-	psi-mi:"MI:0427"(Identification by mass spectrometry)	psi-mi:"MI:0427"(Identification by mass spectrometry)