#ID(s) interactor A	ID(s) interactor B	Alt. ID(s) interactor A	Alt. ID(s) interactor B	Alias(es) interactor A	Alias(es) interactor B	Interaction detection method(s)	Publication 1st author(s)	Publication Identifier(s)	Taxid interactor A	Taxid interactor B	Interaction type(s)	Source database(s)	Interaction identifier(s)	Confidence value(s)	Expansion method(s)	Biological role(s) interactor A	Biological role(s) interactor B	Experimental role(s) interactor A	Experimental role(s) interactor B	Type(s) interactor A	Type(s) interactor B	Xref(s) interactor A	Xref(s) interactor B	Interaction Xref(s)	Annotation(s) interactor A	Annotation(s) interactor B	Interaction annotation(s)	Host organism(s)	Interaction parameter(s)	Creation date	Update date	Checksum(s) interactor A	Checksum(s) interactor B	Interaction Checksum(s)	Negative	Feature(s) interactor A	Feature(s) interactor B	Stoichiometry(s) interactor A	Stoichiometry(s) interactor B	Identification method participant A	Identification method participant B
uniprotkb:Q8L5W8	uniprotkb:Q9LKL2	intact:EBI-630752|uniprotkb:Q84WY4|uniprotkb:O80727|ensemblplants:AT2G46970.1	intact:EBI-618423|ensemblplants:AT5G61380.1|uniprotkb:Q9M4B7	psi-mi:pil1_arath(display_long)|uniprotkb:BHLH124(gene name synonym)|uniprotkb:EN110(gene name synonym)|uniprotkb:PIL1(gene name)|psi-mi:PIL1(display_short)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 1(gene name synonym)|uniprotkb:Transcription factor EN 110(gene name synonym)|uniprotkb:bHLH transcription factor bHLH124(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 124(gene name synonym)|uniprotkb:F14M4.20(orf name)|uniprotkb:At2g46970(locus name)	psi-mi:aprr1_arath(display_long)|uniprotkb:APRR1(gene name)|psi-mi:APRR1(display_short)|uniprotkb:AIP1(gene name synonym)|uniprotkb:TOC1(gene name synonym)|uniprotkb:At5g61380(locus name)|uniprotkb:MFB13.16(orf name)|uniprotkb:Pseudo-response regulator 1(gene name synonym)|uniprotkb:Timing of CAB expression 1(gene name synonym)|uniprotkb:ABI3-interacting protein 1(gene name synonym)	psi-mi:"MI:0018"(two hybrid)	Matsushika et al. (2002)	pubmed:11828029	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-630757	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_182220.2|interpro:IPR011598(Helix-loop-helix DNA-binding)|ensemblplants:AT2G46970.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009641"(shade avoidance)|go:"GO:0010017"(red or far-red light signaling pathway)|go:"GO:0046983"(protein dimerization activity)|ensemblplants:AT2G46970(gene)|go:"GO:1990110"(callus formation)|interpro:IPR036638|interpro:IPR031066	interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR010402(CCT)|interpro:IPR011006(CheY-like)|ensemblplants:AT5G61380(gene)|ensemblplants:AT5G61380.1(transcript)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0007623"(circadian rhythm)|go:"GO:0009908"(flower development)|go:"GO:0010031"(circumnutation)|go:"GO:0010468"(regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|refseq:NP_200946.1|dip:DIP-33896N	-	-	-	comment:The authors note that the intro/exon alignment for the isolated PIL1 cDNA differed slightly from the annotated gene within Genbank.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2005/08/04	2014/10/16	rogid:I6IlsLO4EdJ1QWGQ+N7YX0WhHgM3702	rogid:fPd/KfK7URqhxA4fc8JCj3SuoAg3702	intact-crc:4A07A555B8DA67E0|rigid:Aoj9B6pNCzFTbDD7WL8RQx1dlYk	false	-	-	-	-	psi-mi:"MI:0078"(nucleotide sequence identification)	psi-mi:"MI:0078"(nucleotide sequence identification)
uniprotkb:Q9LKL2	uniprotkb:Q8L5W8	intact:EBI-618423|ensemblplants:AT5G61380.1|uniprotkb:Q9M4B7	intact:EBI-630752|uniprotkb:Q84WY4|uniprotkb:O80727|ensemblplants:AT2G46970.1	psi-mi:aprr1_arath(display_long)|uniprotkb:APRR1(gene name)|psi-mi:APRR1(display_short)|uniprotkb:AIP1(gene name synonym)|uniprotkb:TOC1(gene name synonym)|uniprotkb:At5g61380(locus name)|uniprotkb:MFB13.16(orf name)|uniprotkb:Pseudo-response regulator 1(gene name synonym)|uniprotkb:Timing of CAB expression 1(gene name synonym)|uniprotkb:ABI3-interacting protein 1(gene name synonym)	psi-mi:pil1_arath(display_long)|uniprotkb:BHLH124(gene name synonym)|uniprotkb:EN110(gene name synonym)|uniprotkb:PIL1(gene name)|psi-mi:PIL1(display_short)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 1(gene name synonym)|uniprotkb:Transcription factor EN 110(gene name synonym)|uniprotkb:bHLH transcription factor bHLH124(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 124(gene name synonym)|uniprotkb:F14M4.20(orf name)|uniprotkb:At2g46970(locus name)	psi-mi:"MI:0018"(two hybrid)	Matsushika et al. (2002)	pubmed:11828029	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-630764	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR010402(CCT)|interpro:IPR011006(CheY-like)|ensemblplants:AT5G61380(gene)|ensemblplants:AT5G61380.1(transcript)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0007623"(circadian rhythm)|go:"GO:0009908"(flower development)|go:"GO:0010031"(circumnutation)|go:"GO:0010468"(regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|refseq:NP_200946.1|dip:DIP-33896N	refseq:NP_182220.2|interpro:IPR011598(Helix-loop-helix DNA-binding)|ensemblplants:AT2G46970.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009641"(shade avoidance)|go:"GO:0010017"(red or far-red light signaling pathway)|go:"GO:0046983"(protein dimerization activity)|ensemblplants:AT2G46970(gene)|go:"GO:1990110"(callus formation)|interpro:IPR036638|interpro:IPR031066	-	-	-	caution:The C terminal region of APRR1 used as bait in this experiment was not presented in the paper.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2005/08/04	2014/10/16	rogid:fPd/KfK7URqhxA4fc8JCj3SuoAg3702	rogid:I6IlsLO4EdJ1QWGQ+N7YX0WhHgM3702	intact-crc:A1F30E158011ACF4|rigid:Aoj9B6pNCzFTbDD7WL8RQx1dlYk	false	binding-associated region:?-?	binding-associated region:94-416	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:Q9LKL2	uniprotkb:O80536	intact:EBI-618423|ensemblplants:AT5G61380.1|uniprotkb:Q9M4B7	intact:EBI-625701|uniprotkb:Q9SBC5|uniprotkb:A5Y7A2|uniprotkb:A5Y7A3|uniprotkb:A5Y7A4|uniprotkb:A5Y7A5|uniprotkb:A5Y7A6|uniprotkb:A5Y7A7|uniprotkb:A5Y7A8|uniprotkb:A5Y7A9|uniprotkb:A5Y7B0|uniprotkb:A5Y7B1|uniprotkb:A5Y7B2|uniprotkb:A5Y7B3|uniprotkb:A5Y7B4|uniprotkb:A5Y7B5|uniprotkb:A5Y7B6|ensemblplants:AT1G09530.1|ensemblplants:AT1G09530.2|ensemblplants:AT1G09530.3|ensemblplants:AT1G09530.4|ensemblplants:AT1G09530.5|ensemblplants:AT1G09530.6	psi-mi:aprr1_arath(display_long)|uniprotkb:APRR1(gene name)|psi-mi:APRR1(display_short)|uniprotkb:AIP1(gene name synonym)|uniprotkb:TOC1(gene name synonym)|uniprotkb:At5g61380(locus name)|uniprotkb:MFB13.16(orf name)|uniprotkb:Pseudo-response regulator 1(gene name synonym)|uniprotkb:Timing of CAB expression 1(gene name synonym)|uniprotkb:ABI3-interacting protein 1(gene name synonym)	psi-mi:pif3_arath(display_long)|uniprotkb:Phytochrome-associated protein 3(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 8(gene name synonym)|uniprotkb:PIF3(gene name)|psi-mi:PIF3(display_short)|uniprotkb:PAP3(gene name synonym)|uniprotkb:BHLH8(gene name synonym)|uniprotkb:At1g09530(locus name)|uniprotkb:F14J9.19(orf name)|uniprotkb:Transcription factor EN 100(gene name synonym)|uniprotkb:bHLH transcription factor bHLH008(gene name synonym)|uniprotkb:Phytochrome-interacting factor 3(gene name synonym)|uniprotkb:EN100(gene name synonym)	psi-mi:"MI:0018"(two hybrid)	Matsushika et al. (2002)	pubmed:11828029	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-630773	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR010402(CCT)|interpro:IPR011006(CheY-like)|ensemblplants:AT5G61380(gene)|ensemblplants:AT5G61380.1(transcript)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0007623"(circadian rhythm)|go:"GO:0009908"(flower development)|go:"GO:0010031"(circumnutation)|go:"GO:0010468"(regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|refseq:NP_200946.1|dip:DIP-33896N	ensemblplants:AT1G09530(gene)|ensemblplants:AT1G09530.1(transcript)|ensemblplants:AT1G09530.2(transcript)|ensemblplants:AT1G09530.3(transcript)|ensemblplants:AT1G09530.4(transcript)|ensemblplants:AT1G09530.5(transcript)|ensemblplants:AT1G09530.6(transcript)|go:"GO:0000976"(transcription cis-regulatory region binding)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009585"(red, far-red light phototransduction)|go:"GO:0009639"(response to red or far red light)|go:"GO:0009704"(de-etiolation)|go:"GO:0009740"(gibberellic acid mediated signaling pathway)|go:"GO:0031539"(positive regulation of anthocyanin metabolic process)|go:"GO:0042548"(regulation of photosynthesis, light reaction)|go:"GO:0042802"(identical protein binding)|go:"GO:0046983"(protein dimerization activity)|interpro:IPR011598(Helix-loop-helix DNA-binding)|interpro:IPR036638|interpro:IPR044273|go:"GO:0010017"(red or far-red light signaling pathway)|refseq:NP_172424.1|refseq:NP_849626.1|refseq:NP_001318964.1|refseq:NP_001318965.1|refseq:NP_001322700.1|refseq:NP_001322701.1|dip:DIP-33892N	-	-	-	caution:The C terminal region of APRR1 used as bait in this experiment was not presented in the paper.	taxid:4932(yeasx)|taxid:4932("Saccharomyces cerevisiae (Baker's yeast)")	-	2005/08/04	2014/10/16	rogid:fPd/KfK7URqhxA4fc8JCj3SuoAg3702	rogid:oS4sx9/jElePMaKnlIpLRcjOQpw3702	intact-crc:3E3AF10EB76FC464|rigid:JOnj0NyElxqTGihvFJ/tBiUGXyE	false	binding-associated region:?-?	-	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)
uniprotkb:Q8L5W8	uniprotkb:Q9LKL2	intact:EBI-630752|uniprotkb:Q84WY4|uniprotkb:O80727|ensemblplants:AT2G46970.1	intact:EBI-618423|ensemblplants:AT5G61380.1|uniprotkb:Q9M4B7	psi-mi:pil1_arath(display_long)|uniprotkb:BHLH124(gene name synonym)|uniprotkb:EN110(gene name synonym)|uniprotkb:PIL1(gene name)|psi-mi:PIL1(display_short)|uniprotkb:Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 1(gene name synonym)|uniprotkb:Transcription factor EN 110(gene name synonym)|uniprotkb:bHLH transcription factor bHLH124(gene name synonym)|uniprotkb:Basic helix-loop-helix protein 124(gene name synonym)|uniprotkb:F14M4.20(orf name)|uniprotkb:At2g46970(locus name)	psi-mi:aprr1_arath(display_long)|uniprotkb:APRR1(gene name)|psi-mi:APRR1(display_short)|uniprotkb:AIP1(gene name synonym)|uniprotkb:TOC1(gene name synonym)|uniprotkb:At5g61380(locus name)|uniprotkb:MFB13.16(orf name)|uniprotkb:Pseudo-response regulator 1(gene name synonym)|uniprotkb:Timing of CAB expression 1(gene name synonym)|uniprotkb:ABI3-interacting protein 1(gene name synonym)	psi-mi:"MI:0096"(pull down)	Matsushika et al. (2002)	pubmed:11828029	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	taxid:3702(arath)|taxid:3702("Arabidopsis thaliana (Mouse-ear cress)")	psi-mi:"MI:0915"(physical association)	psi-mi:"MI:0469"(IntAct)	intact:EBI-630785	-	-	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0499"(unspecified role)	psi-mi:"MI:0496"(bait)	psi-mi:"MI:0498"(prey)	psi-mi:"MI:0326"(protein)	psi-mi:"MI:0326"(protein)	refseq:NP_182220.2|interpro:IPR011598(Helix-loop-helix DNA-binding)|ensemblplants:AT2G46970.1(transcript)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0009641"(shade avoidance)|go:"GO:0010017"(red or far-red light signaling pathway)|go:"GO:0046983"(protein dimerization activity)|ensemblplants:AT2G46970(gene)|go:"GO:1990110"(callus formation)|interpro:IPR036638|interpro:IPR031066	interpro:IPR001789(Signal transduction response regulator, receiver region)|interpro:IPR010402(CCT)|interpro:IPR011006(CheY-like)|ensemblplants:AT5G61380(gene)|ensemblplants:AT5G61380.1(transcript)|go:"GO:0000160"(phosphorelay signal transduction system)|go:"GO:0003677"(DNA binding)|go:"GO:0003700"(DNA-binding transcription factor activity)|go:"GO:0005634"(nucleus)|go:"GO:0006351"(transcription, DNA-templated)|go:"GO:0006355"(regulation of transcription, DNA-templated)|go:"GO:0007623"(circadian rhythm)|go:"GO:0009908"(flower development)|go:"GO:0010031"(circumnutation)|go:"GO:0010468"(regulation of gene expression)|go:"GO:0010629"(negative regulation of gene expression)|refseq:NP_200946.1|dip:DIP-33896N	-	-	-	caution:The C terminal region of APRR1 used as bait in this experiment was not presented in the paper.	taxid:-1(in vitro)|taxid:-1(In vitro)	-	2005/08/04	2014/10/16	rogid:I6IlsLO4EdJ1QWGQ+N7YX0WhHgM3702	rogid:fPd/KfK7URqhxA4fc8JCj3SuoAg3702	intact-crc:6C50606E5790A51A|rigid:Aoj9B6pNCzFTbDD7WL8RQx1dlYk	false	binding-associated region:94-416|glutathione s tranferase tag:?-?	binding-associated region:?-?|myc tag:?-?	-	-	psi-mi:"MI:0396"(predetermined participant)	psi-mi:"MI:0396"(predetermined participant)