format-version: 1.2 ontology: go/extensions/taxon-refg-subset [Term] id: NCBITaxon:1 name: root namespace: unknown synonym: "all" RELATED [] [Term] id: NCBITaxon:10066 name: Muridae namespace: unknown is_a: NCBITaxon:337687 ! Muroidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:10088 name: Mus namespace: unknown synonym: "Nannomys" RELATED [] synonym: "mice" EXACT [] is_a: NCBITaxon:39107 ! Murinae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:10090 name: Mus musculus namespace: unknown synonym: "Mus muscaris" RELATED [] synonym: "house mouse" EXACT [] synonym: "mice C57BL/6xCBA/CaJ hybrid" RELATED [] synonym: "mouse" EXACT [] is_a: NCBITaxon:10088 ! Mus property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:10114 name: Rattus namespace: unknown synonym: "rat" EXACT [] synonym: "rats" EXACT [] is_a: NCBITaxon:39107 ! Murinae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:10116 name: Rattus norvegicus namespace: unknown synonym: "Gunn rats" RELATED [] synonym: "Norway rat" EXACT [] synonym: "Rattus norvegicus8" RELATED [] synonym: "Rattus norwegicus" RELATED [] synonym: "Rattus rattiscus" RELATED [] synonym: "Rattus sp. strain Wistar" EXACT [] synonym: "brown rat" EXACT [] synonym: "rat" EXACT [] synonym: "rats" EXACT [] is_a: NCBITaxon:10114 ! Rattus property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:117570 name: Teleostomi namespace: unknown is_a: NCBITaxon:7776 ! Gnathostomata [Term] id: NCBITaxon:117571 name: Euteleostomi namespace: unknown synonym: "bony vertebrates" EXACT [] is_a: NCBITaxon:117570 ! Teleostomi [Term] id: NCBITaxon:119089 name: Chromadorea namespace: unknown synonym: "Adenophorea" RELATED [] is_a: NCBITaxon:6231 ! Nematoda property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:1224 name: Proteobacteria namespace: unknown synonym: "Proteobacteria (as class) Stackebrandt et al. 1988" RELATED [] synonym: "Proteobacteria Garrity et al. 2005" RELATED [] synonym: "not Proteobacteria Cavalier-Smith 2002" RELATED [] synonym: "proteobacteria" RELATED [] synonym: "purple bacteria" EXACT [] synonym: "purple bacteria and relatives" EXACT [] synonym: "purple non-sulfur bacteria" EXACT [] synonym: "purple photosynthetic bacteria" EXACT [] synonym: "purple photosynthetic bacteria and relatives" EXACT [] is_a: NCBITaxon:2 ! Bacteria property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:1236 name: Gammaproteobacteria namespace: unknown synonym: "Gammaproteobacteria Garrity et al. 2005" RELATED [] synonym: "Proteobacteria gamma subdivision" RELATED [] synonym: "Purple bacteria, gamma subdivision" RELATED [] synonym: "g-proteobacteria" RELATED [] synonym: "gamma proteobacteria" RELATED [] synonym: "gamma subdivision" RELATED [] synonym: "gamma subgroup" RELATED [] is_a: NCBITaxon:1224 ! Proteobacteria property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:131221 name: Streptophytina namespace: unknown synonym: "Charophyta/Embryophyta group" RELATED [] synonym: "charophyte/embryophyte group" RELATED [] is_a: NCBITaxon:35493 ! Streptophyta [Term] id: NCBITaxon:131567 name: cellular organisms namespace: unknown synonym: "biota" RELATED [] is_a: NCBITaxon:1 ! root [Term] id: NCBITaxon:142796 name: Mycetozoa namespace: unknown synonym: "mycetozoans" RELATED [] is_a: NCBITaxon:2759 ! Eukaryota [Term] id: NCBITaxon:147537 name: Saccharomycotina namespace: unknown is_a: NCBITaxon:4890 ! Ascomycota property_value: has_rank NCBITaxon:subphylum [Term] id: NCBITaxon:147554 name: Schizosaccharomycetes namespace: unknown synonym: "Archiascomycota" RELATED [] synonym: "Taphrinomycotina" RELATED [] is_a: NCBITaxon:4890 ! Ascomycota property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:186285 name: Drosophiliti namespace: unknown is_a: NCBITaxon:46879 ! Drosophilina [Term] id: NCBITaxon:186623 name: Actinopteri namespace: unknown is_a: NCBITaxon:7898 ! Actinopterygii [Term] id: NCBITaxon:186624 name: Elopocephala namespace: unknown is_a: NCBITaxon:32443 ! Teleostei [Term] id: NCBITaxon:186625 name: Clupeocephala namespace: unknown is_a: NCBITaxon:186624 ! Elopocephala [Term] id: NCBITaxon:186626 name: Otophysi namespace: unknown is_a: NCBITaxon:32519 ! Ostariophysi [Term] id: NCBITaxon:186627 name: Cypriniphysi namespace: unknown is_a: NCBITaxon:186626 ! Otophysi [Term] id: NCBITaxon:186634 name: Otocephala namespace: unknown is_a: NCBITaxon:186625 ! Clupeocephala [Term] id: NCBITaxon:197562 name: Pancrustacea namespace: unknown is_a: NCBITaxon:197563 ! Mandibulata [Term] id: NCBITaxon:197563 name: Mandibulata namespace: unknown synonym: "mandibulates" EXACT [] is_a: NCBITaxon:6656 ! Arthropoda [Term] id: NCBITaxon:2 name: Bacteria namespace: unknown synonym: "Monera" RELATED [] synonym: "Procaryotae" RELATED [] synonym: "Prokaryota" RELATED [] synonym: "Prokaryotae" RELATED [] synonym: "eubacteria" RELATED [] synonym: "not Bacteria Haeckel 1894" RELATED [] is_a: NCBITaxon:131567 ! cellular organisms property_value: has_rank NCBITaxon:superkingdom [Term] id: NCBITaxon:207598 name: Homo/Pan/Gorilla group namespace: unknown is_a: NCBITaxon:9604 ! Hominidae [Term] id: NCBITaxon:2759 name: Eukaryota namespace: unknown synonym: "Eucarya" RELATED [] synonym: "Eucaryotae" RELATED [] synonym: "Eukarya" RELATED [] synonym: "Eukaryotae" RELATED [] synonym: "eucaryotes" EXACT [] synonym: "eukaryotes" EXACT [] is_a: NCBITaxon:131567 ! cellular organisms property_value: has_rank NCBITaxon:superkingdom [Term] id: NCBITaxon:30727 name: Cyprinoidea namespace: unknown synonym: "Cyprinoidei" RELATED [] is_a: NCBITaxon:7952 ! Cypriniformes property_value: has_rank NCBITaxon:superfamily [Term] id: NCBITaxon:314146 name: Euarchontoglires namespace: unknown is_a: NCBITaxon:9347 ! Eutheria property_value: has_rank NCBITaxon:superorder [Term] id: NCBITaxon:314147 name: Glires namespace: unknown synonym: "Rodents and rabbits" EXACT [] is_a: NCBITaxon:314146 ! Euarchontoglires [Term] id: NCBITaxon:314293 name: Simiiformes namespace: unknown synonym: "Anthropoidea" RELATED [] is_a: NCBITaxon:376913 ! Haplorrhini property_value: has_rank NCBITaxon:infraorder [Term] id: NCBITaxon:314295 name: Hominoidea namespace: unknown synonym: "apes" EXACT [] is_a: NCBITaxon:9526 ! Catarrhini property_value: has_rank NCBITaxon:superfamily [Term] id: NCBITaxon:3193 name: Embryophyta namespace: unknown synonym: "higher plants" EXACT [] synonym: "land plants" EXACT [] synonym: "plants" EXACT [] is_a: NCBITaxon:131221 ! Streptophytina [Term] id: NCBITaxon:32341 name: Sophophora namespace: unknown is_a: NCBITaxon:7215 ! Drosophila property_value: has_rank NCBITaxon:subgenus [Term] id: NCBITaxon:32346 name: melanogaster group namespace: unknown is_a: NCBITaxon:32341 ! Sophophora property_value: has_rank NCBITaxon:species_group [Term] id: NCBITaxon:32351 name: melanogaster subgroup namespace: unknown is_a: NCBITaxon:32346 ! melanogaster group property_value: has_rank NCBITaxon:species_subgroup [Term] id: NCBITaxon:32443 name: Teleostei namespace: unknown synonym: "teleost fishes" EXACT [] is_a: NCBITaxon:41665 ! Neopterygii [Term] id: NCBITaxon:32519 name: Ostariophysi namespace: unknown is_a: NCBITaxon:186634 ! Otocephala [Term] id: NCBITaxon:32523 name: Tetrapoda namespace: unknown synonym: "tetrapods" EXACT [] is_a: NCBITaxon:8287 ! Sarcopterygii [Term] id: NCBITaxon:32524 name: Amniota namespace: unknown synonym: "amniotes" EXACT [] is_a: NCBITaxon:32523 ! Tetrapoda [Term] id: NCBITaxon:32525 name: Theria namespace: unknown is_a: NCBITaxon:40674 ! Mammalia [Term] id: NCBITaxon:32561 name: Sauria namespace: unknown synonym: "Diapsida" RELATED [] synonym: "diapsids" EXACT [] is_a: NCBITaxon:8457 ! Sauropsida [Term] id: NCBITaxon:33083 name: Dictyosteliida namespace: unknown synonym: "Dictyostelia" RELATED [] synonym: "Dictyosteliales" RELATED [] synonym: "Dictyostelida" RELATED [] synonym: "dictyostelid cellular slime molds" EXACT [] is_a: NCBITaxon:142796 ! Mycetozoa property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:33090 name: Viridiplantae namespace: unknown synonym: "Chlorobionta" RELATED [] synonym: "Chlorobionta Bremer 1985" RELATED [] synonym: "Chlorophyta/Embryophyta group" RELATED [] synonym: "Viridiplantae Cavalier-Smith 1981" RELATED [] synonym: "chlorophyte/embryophyte group" RELATED [] synonym: "green plants" EXACT [] is_a: NCBITaxon:2759 ! Eukaryota property_value: has_rank NCBITaxon:kingdom [Term] id: NCBITaxon:33154 name: Fungi/Metazoa group namespace: unknown is_a: NCBITaxon:2759 ! Eukaryota [Term] id: NCBITaxon:33208 name: Metazoa namespace: unknown synonym: "Animalia" RELATED [] synonym: "animals" RELATED [] synonym: "metazoans" EXACT [] synonym: "multicellular animals" EXACT [] is_a: NCBITaxon:33154 ! Fungi/Metazoa group property_value: has_rank NCBITaxon:kingdom [Term] id: NCBITaxon:33213 name: Bilateria namespace: unknown is_a: NCBITaxon:6072 ! Eumetazoa [Term] id: NCBITaxon:33217 name: Pseudocoelomata namespace: unknown is_a: NCBITaxon:33213 ! Bilateria [Term] id: NCBITaxon:33316 name: Coelomata namespace: unknown is_a: NCBITaxon:33213 ! Bilateria [Term] id: NCBITaxon:33317 name: Protostomia namespace: unknown is_a: NCBITaxon:33316 ! Coelomata [Term] id: NCBITaxon:33340 name: Neoptera namespace: unknown is_a: NCBITaxon:7496 ! Pterygota property_value: has_rank NCBITaxon:subclass [Term] id: NCBITaxon:33392 name: Endopterygota namespace: unknown synonym: "Holometabola" RELATED [] is_a: NCBITaxon:33340 ! Neoptera property_value: has_rank NCBITaxon:infraclass [Term] id: NCBITaxon:33511 name: Deuterostomia namespace: unknown is_a: NCBITaxon:33316 ! Coelomata [Term] id: NCBITaxon:33553 name: Sciurognathi namespace: unknown is_a: NCBITaxon:9989 ! Rodentia property_value: has_rank NCBITaxon:suborder [Term] id: NCBITaxon:337687 name: Muroidea namespace: unknown is_a: NCBITaxon:33553 ! Sciurognathi [Term] id: NCBITaxon:3398 name: Magnoliophyta namespace: unknown synonym: "Angiospermae" RELATED [] synonym: "angiosperms" EXACT [] synonym: "flowering plants" RELATED [] is_a: NCBITaxon:58024 ! Spermatophyta [Term] id: NCBITaxon:34346 name: Schizosaccharomycetales namespace: unknown is_a: NCBITaxon:147554 ! Schizosaccharomycetes property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:35493 name: Streptophyta namespace: unknown synonym: "Streptophyta Bremer 1985" RELATED [] is_a: NCBITaxon:33090 ! Viridiplantae property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:3699 name: Brassicales namespace: unknown synonym: "Capparales" RELATED [] is_a: NCBITaxon:91836 ! eurosids II property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:3700 name: Brassicaceae namespace: unknown synonym: "Cruciferae" RELATED [] synonym: "mustard family" EXACT [] is_a: NCBITaxon:3699 ! Brassicales property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:3701 name: Arabidopsis namespace: unknown synonym: "Arabidopsis Heynh." RELATED [] synonym: "Cardaminopsis" RELATED [] synonym: "Cardaminopsis Hayek" RELATED [] is_a: NCBITaxon:3700 ! Brassicaceae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:3702 name: Arabidopsis thaliana namespace: unknown synonym: "Arabidopsis thaliana (L.) Heynh." RELATED [] synonym: "Arbisopsis thaliana" RELATED [] synonym: "mouse-ear cress" EXACT [] synonym: "thale cress" EXACT [] synonym: "thale-cress" EXACT [] is_a: NCBITaxon:3701 ! Arabidopsis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:376913 name: Haplorrhini namespace: unknown is_a: NCBITaxon:9443 ! Primates property_value: has_rank NCBITaxon:suborder [Term] id: NCBITaxon:39107 name: Murinae namespace: unknown is_a: NCBITaxon:10066 ! Muridae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:39562 name: Rasborinae namespace: unknown synonym: "Danioninae" RELATED [] is_a: NCBITaxon:7953 ! Cyprinidae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:40674 name: Mammalia namespace: unknown synonym: "mammals" RELATED [] is_a: NCBITaxon:32524 ! Amniota property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:41665 name: Neopterygii namespace: unknown is_a: NCBITaxon:186623 ! Actinopteri [Term] id: NCBITaxon:436486 name: Dinosauria namespace: unknown is_a: NCBITaxon:8492 ! Archosauria [Term] id: NCBITaxon:436489 name: Saurischia namespace: unknown is_a: NCBITaxon:436486 ! Dinosauria [Term] id: NCBITaxon:436491 name: Theropoda namespace: unknown is_a: NCBITaxon:436489 ! Saurischia [Term] id: NCBITaxon:436492 name: Coelurosauria namespace: unknown is_a: NCBITaxon:436491 ! Theropoda [Term] id: NCBITaxon:43733 name: Muscomorpha namespace: unknown synonym: "Cyclorrhapha" RELATED [] is_a: NCBITaxon:7203 ! Brachycera property_value: has_rank NCBITaxon:infraorder [Term] id: NCBITaxon:43738 name: Schizophora namespace: unknown is_a: NCBITaxon:43733 ! Muscomorpha [Term] id: NCBITaxon:43741 name: Acalyptratae namespace: unknown is_a: NCBITaxon:43738 ! Schizophora [Term] id: NCBITaxon:43746 name: Ephydroidea namespace: unknown is_a: NCBITaxon:43741 ! Acalyptratae property_value: has_rank NCBITaxon:superfamily [Term] id: NCBITaxon:43845 name: Drosophilinae namespace: unknown is_a: NCBITaxon:7214 ! Drosophilidae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:44689 name: Dictyostelium discoideum namespace: unknown is_a: NCBITaxon:5782 ! Dictyostelium property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:46877 name: Drosophilini namespace: unknown is_a: NCBITaxon:43845 ! Drosophilinae property_value: has_rank NCBITaxon:tribe [Term] id: NCBITaxon:46879 name: Drosophilina namespace: unknown is_a: NCBITaxon:46877 ! Drosophilini property_value: has_rank NCBITaxon:subtribe [Term] id: NCBITaxon:4751 name: Fungi namespace: unknown synonym: "fungi" RELATED [] is_a: NCBITaxon:33154 ! Fungi/Metazoa group property_value: has_rank NCBITaxon:kingdom [Term] id: NCBITaxon:4890 name: Ascomycota namespace: unknown synonym: "ascomycetes" RELATED [] synonym: "sac fungi" EXACT [] is_a: NCBITaxon:4751 ! Fungi property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:4891 name: Saccharomycetes namespace: unknown synonym: "Hemiascomycetes" RELATED [] is_a: NCBITaxon:147537 ! Saccharomycotina property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:4892 name: Saccharomycetales namespace: unknown synonym: "Endomycetales" RELATED [] synonym: "budding yeasts" EXACT [] is_a: NCBITaxon:4891 ! Saccharomycetes property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:4893 name: Saccharomycetaceae namespace: unknown is_a: NCBITaxon:4892 ! Saccharomycetales property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:4894 name: Schizosaccharomycetaceae namespace: unknown synonym: "Schizosaccharomycetoideae" RELATED [] synonym: "fission yeasts" EXACT [] is_a: NCBITaxon:34346 ! Schizosaccharomycetales property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:4895 name: Schizosaccharomyces namespace: unknown is_a: NCBITaxon:4894 ! Schizosaccharomycetaceae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:4896 name: Schizosaccharomyces pombe namespace: unknown synonym: "Schizosaccharomyces malidevorans" RELATED [] synonym: "Schizosaccharomyces pombeP" RELATED [] synonym: "fission yeast" EXACT [] is_a: NCBITaxon:4895 ! Schizosaccharomyces property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:4930 name: Saccharomyces namespace: unknown synonym: "Pachytichospora" RELATED [] is_a: NCBITaxon:4893 ! Saccharomycetaceae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:4932 name: Saccharomyces cerevisiae namespace: unknown synonym: "Candida robusta" RELATED [] synonym: "Saccaromyces cerevisiae" RELATED [] synonym: "Saccharomyces capensis" RELATED [] synonym: "Saccharomyces italicus" RELATED [] synonym: "Saccharomyces oviformis" RELATED [] synonym: "Saccharomyces uvarum var. melibiosus" RELATED [] synonym: "Saccharomyes cerevisiae" RELATED [] synonym: "Sccharomyces cerevisiae" RELATED [] synonym: "baker's yeast" EXACT [] synonym: "brewer's yeast" EXACT [] synonym: "lager beer yeast" EXACT [] synonym: "yeast" EXACT [] is_a: NCBITaxon:4930 ! Saccharomyces property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:50557 name: Insecta namespace: unknown synonym: "true insects" EXACT [] is_a: NCBITaxon:6960 ! Hexapoda property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:543 name: Enterobacteriaceae namespace: unknown synonym: "Enterobacteraceae" RELATED [] synonym: "Enterobacteraceae (ex Lapage 1979) Lapage 1982, fam. nov., nom. rev." RELATED [] synonym: "Enterobacteriaceae (ex Rahn 1937) Ewing et al. 1980, fam. nov., nom. rev." RELATED [] synonym: "Enterobacteriaceae Rahn 1937" RELATED [] synonym: "gamma-3 proteobacteria" RELATED [] is_a: NCBITaxon:91347 ! Enterobacteriales property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:55879 name: Rhabditoidea namespace: unknown is_a: NCBITaxon:6236 ! Rhabditida property_value: has_rank NCBITaxon:superfamily [Term] id: NCBITaxon:55885 name: Peloderinae namespace: unknown is_a: NCBITaxon:6243 ! Rhabditidae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:561 name: Escherichia namespace: unknown synonym: "Escherchia" RELATED [] synonym: "Escherichia Castellani and Chalmers 1919" RELATED [] is_a: NCBITaxon:543 ! Enterobacteriaceae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:562 name: Escherichia coli namespace: unknown synonym: "Bacillus coli" RELATED [] synonym: "Bacterium coli" RELATED [] synonym: "Bacterium coli commune" RELATED [] synonym: "Escherchia coli" RELATED [] synonym: "Escherichia coli (Migula 1895) Castellani and Chalmers 1919" RELATED [] synonym: "Eschericia coli" RELATED [] is_a: NCBITaxon:561 ! Escherichia property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:5782 name: Dictyostelium namespace: unknown is_a: NCBITaxon:33083 ! Dictyosteliida property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:58023 name: Tracheophyta namespace: unknown synonym: "vascular plants" EXACT [] is_a: NCBITaxon:3193 ! Embryophyta [Term] id: NCBITaxon:58024 name: Spermatophyta namespace: unknown synonym: "seed plants" EXACT [] is_a: NCBITaxon:78536 ! Euphyllophyta [Term] id: NCBITaxon:6072 name: Eumetazoa namespace: unknown is_a: NCBITaxon:33208 ! Metazoa [Term] id: NCBITaxon:6231 name: Nematoda namespace: unknown synonym: "Nemata" RELATED [] synonym: "nematode" EXACT [] synonym: "nematodes" EXACT [] synonym: "roundworm" EXACT [] synonym: "roundworms" EXACT [] is_a: NCBITaxon:33217 ! Pseudocoelomata property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:6236 name: Rhabditida namespace: unknown is_a: NCBITaxon:119089 ! Chromadorea property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:6237 name: Caenorhabditis namespace: unknown is_a: NCBITaxon:55885 ! Peloderinae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:6239 name: Caenorhabditis elegans namespace: unknown synonym: "nematode" EXACT [] is_a: NCBITaxon:6237 ! Caenorhabditis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:6243 name: Rhabditidae namespace: unknown is_a: NCBITaxon:55879 ! Rhabditoidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:6656 name: Arthropoda namespace: unknown synonym: "arthropods" RELATED [] is_a: NCBITaxon:88770 ! Panarthropoda property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:6960 name: Hexapoda namespace: unknown synonym: "Atelocerata" RELATED [] synonym: "Tracheata" RELATED [] synonym: "Uniramia" RELATED [] synonym: "insects" RELATED [] is_a: NCBITaxon:197562 ! Pancrustacea property_value: has_rank NCBITaxon:superclass [Term] id: NCBITaxon:71240 name: eudicotyledons namespace: unknown synonym: "Dicotyledoneae" RELATED [] synonym: "Magnoliopsida" RELATED [] synonym: "dicots" RELATED [] synonym: "dicotyledons" RELATED [] synonym: "eudicots" RELATED [] is_a: NCBITaxon:3398 ! Magnoliophyta [Term] id: NCBITaxon:71275 name: rosids namespace: unknown synonym: "Rosidae" RELATED [] is_a: NCBITaxon:91827 ! core eudicotyledons property_value: has_rank NCBITaxon:subclass [Term] id: NCBITaxon:7147 name: Diptera namespace: unknown synonym: "flies" RELATED [] is_a: NCBITaxon:33392 ! Endopterygota property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:7203 name: Brachycera namespace: unknown is_a: NCBITaxon:7147 ! Diptera property_value: has_rank NCBITaxon:suborder [Term] id: NCBITaxon:7214 name: Drosophilidae namespace: unknown synonym: "pomace flies" EXACT [] is_a: NCBITaxon:43746 ! Ephydroidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:7215 name: Drosophila namespace: unknown synonym: "Drosophila Fallen, 1823" RELATED [] synonym: "fruit flies" EXACT [] is_a: NCBITaxon:186285 ! Drosophiliti property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:7227 name: Drosophila melanogaster namespace: unknown synonym: "Drosophila melangaster" RELATED [] synonym: "fruit fly" EXACT [] is_a: NCBITaxon:32351 ! melanogaster subgroup property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:7496 name: Pterygota namespace: unknown synonym: "winged insects" EXACT [] is_a: NCBITaxon:85512 ! Dicondylia [Term] id: NCBITaxon:7711 name: Chordata namespace: unknown synonym: "chordates" RELATED [] is_a: NCBITaxon:33511 ! Deuterostomia property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:7742 name: Vertebrata namespace: unknown synonym: "vertebrates" RELATED [] is_a: NCBITaxon:89593 ! Craniata [Term] id: NCBITaxon:7776 name: Gnathostomata namespace: unknown synonym: "jawed vertebrates" EXACT [] is_a: NCBITaxon:7742 ! Vertebrata property_value: has_rank NCBITaxon:superclass [Term] id: NCBITaxon:78536 name: Euphyllophyta namespace: unknown is_a: NCBITaxon:58023 ! Tracheophyta [Term] id: NCBITaxon:7898 name: Actinopterygii namespace: unknown synonym: "Osteichthyes" RELATED [] synonym: "bony fishes" RELATED [] synonym: "fishes" RELATED [] synonym: "ray-finned fishes" EXACT [] is_a: NCBITaxon:117571 ! Euteleostomi property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:7952 name: Cypriniformes namespace: unknown is_a: NCBITaxon:186627 ! Cypriniphysi property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:7953 name: Cyprinidae namespace: unknown is_a: NCBITaxon:30727 ! Cyprinoidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:7954 name: Danio namespace: unknown synonym: "Brachydanio" RELATED [] is_a: NCBITaxon:39562 ! Rasborinae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:7955 name: Danio rerio namespace: unknown synonym: "Brachidanio rerio" RELATED [] synonym: "Brachydanio rerio" RELATED [] synonym: "Cyprinus rerio" RELATED [] synonym: "Cyprinus rerio Hamilton, 1822" RELATED [] synonym: "Danio rerio (Hamilton, 1822)" RELATED [] synonym: "leopard danio" EXACT [] synonym: "zebra danio" EXACT [] synonym: "zebra fish" EXACT [] synonym: "zebrafish" EXACT [] is_a: NCBITaxon:7954 ! Danio property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:8287 name: Sarcopterygii namespace: unknown is_a: NCBITaxon:117571 ! Euteleostomi [Term] id: NCBITaxon:8457 name: Sauropsida namespace: unknown synonym: "sauropsids" EXACT [] is_a: NCBITaxon:32524 ! Amniota [Term] id: NCBITaxon:8492 name: Archosauria namespace: unknown is_a: NCBITaxon:32561 ! Sauria [Term] id: NCBITaxon:85512 name: Dicondylia namespace: unknown is_a: NCBITaxon:50557 ! Insecta [Term] id: NCBITaxon:8782 name: Aves namespace: unknown synonym: "birds" RELATED [] is_a: NCBITaxon:436492 ! Coelurosauria property_value: has_rank NCBITaxon:class [Term] id: NCBITaxon:8825 name: Neognathae namespace: unknown is_a: NCBITaxon:8782 ! Aves property_value: has_rank NCBITaxon:superorder [Term] id: NCBITaxon:88770 name: Panarthropoda namespace: unknown is_a: NCBITaxon:33317 ! Protostomia [Term] id: NCBITaxon:89593 name: Craniata namespace: unknown is_a: NCBITaxon:7711 ! Chordata property_value: has_rank NCBITaxon:subphylum [Term] id: NCBITaxon:8976 name: Galliformes namespace: unknown is_a: NCBITaxon:8825 ! Neognathae property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:9005 name: Phasianidae namespace: unknown synonym: "turkeys" EXACT [] is_a: NCBITaxon:8976 ! Galliformes property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:9030 name: Gallus namespace: unknown is_a: NCBITaxon:9072 ! Phasianinae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:9031 name: Gallus gallus namespace: unknown synonym: "Gallus domesticus" RELATED [] synonym: "Gallus gallus domesticus" RELATED [] synonym: "bantam" EXACT [] synonym: "chicken" EXACT [] synonym: "chickens" EXACT [] is_a: NCBITaxon:9030 ! Gallus property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:9072 name: Phasianinae namespace: unknown is_a: NCBITaxon:9005 ! Phasianidae property_value: has_rank NCBITaxon:subfamily [Term] id: NCBITaxon:91347 name: Enterobacteriales namespace: unknown synonym: "'Enterobacteriales'" RELATED [] synonym: "Enterobacteriaceae and related endosymbionts" RELATED [] synonym: "Enterobacteriaceae group" RELATED [] synonym: "enterobacteria" RELATED [] synonym: "gamma-3 proteobacteria" RELATED [] is_a: NCBITaxon:1236 ! Gammaproteobacteria property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:91827 name: core eudicotyledons namespace: unknown synonym: "core eudicots" RELATED [] is_a: NCBITaxon:71240 ! eudicotyledons [Term] id: NCBITaxon:91836 name: eurosids II namespace: unknown is_a: NCBITaxon:71275 ! rosids [Term] id: NCBITaxon:9347 name: Eutheria namespace: unknown synonym: "Placentalia" RELATED [] synonym: "eutherian mammals" EXACT [] synonym: "placental mammals" EXACT [] synonym: "placentals" EXACT [] is_a: NCBITaxon:32525 ! Theria [Term] id: NCBITaxon:9443 name: Primates namespace: unknown synonym: "Primata" RELATED [] synonym: "primate" EXACT [] synonym: "primates" RELATED [] is_a: NCBITaxon:314146 ! Euarchontoglires property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:9526 name: Catarrhini namespace: unknown is_a: NCBITaxon:314293 ! Simiiformes property_value: has_rank NCBITaxon:parvorder [Term] id: NCBITaxon:9604 name: Hominidae namespace: unknown synonym: "Pongidae" RELATED [] synonym: "great apes" EXACT [] is_a: NCBITaxon:314295 ! Hominoidea property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:9605 name: Homo namespace: unknown is_a: NCBITaxon:207598 ! Homo/Pan/Gorilla group property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:9606 name: Homo sapiens namespace: unknown synonym: "human" EXACT [] synonym: "man" EXACT [] is_a: NCBITaxon:9605 ! Homo property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:9989 name: Rodentia namespace: unknown synonym: "rodents" RELATED [] is_a: NCBITaxon:314147 ! Glires property_value: has_rank NCBITaxon:order [Typedef] id: has_rank name: has_rank def: "A metadata relation between a class and its taxonomic rank (eg species, family)" [] comment: This is an abstract class for use with the NCBI taxonomy to name the depth of the node within the tree. The link between the node term and the rank is only visible if you are using an obo 1.3 aware browser/editor; otherwise this can be ignored