default-namespace: biological_process

[Term]
id: GO:0002499 ! proteolysis within endosome associated with antigen processing and presentation
intersection_of: GO:0002496 ! proteolysis associated with antigen processing and presentation
intersection_of: occurs_in GO:0005768 ! endosome

[Term]
id: GO:0002500 ! proteolysis within lysosome associated with antigen processing and presentation
intersection_of: GO:0002496 ! proteolysis associated with antigen processing and presentation
intersection_of: occurs_in GO:0005764 ! lysosome

[Term]
id: GO:0006264 ! mitochondrial DNA replication
intersection_of: GO:0006260 ! DNA replication
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0006858 ! extracellular transport
intersection_of: GO:0006810 ! transport
intersection_of: occurs_in GO:0005576 ! extracellular region

[Term]
id: GO:0006859 ! extracellular carbohydrate transport
intersection_of: GO:0008643 ! carbohydrate transport
intersection_of: occurs_in GO:0005576 ! extracellular region

[Term]
id: GO:0006860 ! extracellular amino acid transport
intersection_of: GO:0006865 ! amino acid transport
intersection_of: occurs_in GO:0005576 ! extracellular region

[Term]
id: GO:0006886 ! intracellular protein transport
intersection_of: GO:0015031 ! protein transport
intersection_of: occurs_in GO:0005622 ! intracellular

[Term]
id: GO:0007039 ! vacuolar protein catabolic process
intersection_of: GO:0030163 ! protein catabolic process
intersection_of: occurs_in GO:0005773 ! vacuole

[Term]
id: GO:0007103 ! spindle pole body duplication in nuclear envelope
intersection_of: GO:0030474 ! spindle pole body duplication
intersection_of: occurs_in GO:0005635 ! nuclear envelope

[Term]
id: GO:0015680 ! intracellular copper ion transport
intersection_of: GO:0006825 ! copper ion transport
intersection_of: occurs_in GO:0005622 ! intracellular

[Term]
id: GO:0015859 ! intracellular nucleoside transport
intersection_of: GO:0015858 ! nucleoside transport
intersection_of: occurs_in GO:0005622 ! intracellular

[Term]
id: GO:0030472 ! mitotic spindle organization in nucleus
intersection_of: GO:0007052 ! mitotic spindle organization
intersection_of: occurs_in GO:0005634 ! nucleus

[Term]
id: GO:0030581 ! intracellular protein transport in host
intersection_of: GO:0015031 ! protein transport
intersection_of: occurs_in GO:0043657 ! host cell

[Term]
id: GO:0031046 ! spindle pole body duplication in cytoplasm
intersection_of: GO:0030474 ! spindle pole body duplication
intersection_of: occurs_in GO:0005737 ! cytoplasm

[Term]
id: GO:0032042 ! mitochondrial DNA metabolic process
intersection_of: GO:0006259 ! DNA metabolic process
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0032043 ! mitochondrial DNA catabolic process
intersection_of: GO:0006308 ! DNA catabolic process
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0032365 ! intracellular lipid transport
intersection_of: GO:0006869 ! lipid transport
intersection_of: occurs_in GO:0005622 ! intracellular

[Term]
id: GO:0032366 ! intracellular sterol transport
intersection_of: GO:0015918 ! sterol transport
intersection_of: occurs_in GO:0005622 ! intracellular

[Term]
id: GO:0032367 ! intracellular cholesterol transport
intersection_of: GO:0030301 ! cholesterol transport
intersection_of: occurs_in GO:0005622 ! intracellular

[Term]
id: GO:0043504 ! mitochondrial DNA repair
intersection_of: GO:0006281 ! DNA repair
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0046795 ! intracellular virion transport
intersection_of: GO:0046794 ! virion transport
intersection_of: occurs_in GO:0005622 ! intracellular

[Term]
id: GO:0046907 ! intracellular transport
intersection_of: GO:0006810 ! transport
intersection_of: occurs_in GO:0005622 ! intracellular

[Term]
id: GO:0048312 ! intracellular distribution of mitochondria
intersection_of: GO:0048311 ! mitochondrion distribution
intersection_of: occurs_in GO:0005622 ! intracellular
! correted diff; now ok

[Term]
id: GO:0051457 ! maintenance of protein location in nucleus
intersection_of: GO:0045185 ! maintenance of protein location
intersection_of: occurs_in GO:0005634 ! nucleus

[Term]
id: GO:0006624 ! vacuolar protein processing
intersection_of: GO:0016485 ! protein processing
intersection_of: occurs_in GO:0005773 ! vacuole

[Term]
id: GO:0033259 ! plastid DNA replication
intersection_of: GO:0006261 ! DNA-dependent DNA replication
intersection_of: occurs_in GO:0009536 ! plastid

[Term]
id: GO:0051220 ! cytoplasmic sequestering of protein
intersection_of: GO:0045185 ! maintenance of protein location
intersection_of: occurs_in GO:0005737 ! cytoplasm

[Term]
id: GO:0001507 ! acetylcholine catabolic process in synaptic cleft
intersection_of: GO:0006581 ! acetylcholine catabolic process
intersection_of: occurs_in GO:0043083 ! synaptic cleft

[Term]
id: GO:0006390 ! transcription from mitochondrial promoter
intersection_of: GO:0006351 ! transcription, DNA dependent
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0006393 ! termination of mitochondrial transcription
intersection_of: GO:0006353 ! transcription termination
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0033576 ! protein amino acid glycosylation in cytosol
intersection_of: GO:0006486 ! protein amino acid glycosylation
intersection_of: occurs_in GO:0005829 ! cytosol

[Term]
id: GO:0033577 ! protein amino acid glycosylation in endoplasmic reticulum
intersection_of: GO:0006486 ! protein amino acid glycosylation
intersection_of: occurs_in GO:0005783 ! endoplasmic reticulum

[Term]
id: GO:0033579 ! protein amino acid galactosylation in endoplasmic reticulum
intersection_of: GO:0042125 ! protein amino acid galactosylation
intersection_of: occurs_in GO:0005783 ! endoplasmic reticulum

[Term]
id: GO:0033582 ! protein amino acid galactosylation in cytosol
intersection_of: GO:0042125 ! protein amino acid galactosylation
intersection_of: occurs_in GO:0005829 ! cytosol

[Term]
id: GO:0051649 ! establishment of localization in cell
intersection_of: GO:0051234 ! establishment of localization
intersection_of: occurs_in GO:0005623 ! cell

[Term]
id: GO:0051668 ! localization within membrane
intersection_of: GO:0051179 ! localization
intersection_of: occurs_in GO:0016020 ! membrane

[Term]
id: GO:0032065 ! cortical protein anchoring
intersection_of: GO:0045185 ! maintenance of protein location
intersection_of: occurs_in GO:0005938 ! cell cortex

[Term]
id: GO:0032543 ! mitochondrial translation
intersection_of: GO:0006412 ! translation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0032544 ! plastid translation
intersection_of: GO:0006412 ! translation
intersection_of: occurs_in GO:0009536 ! plastid

[Term]
id: GO:0033578 ! protein amino acid glycosylation in Golgi
intersection_of: GO:0006486 ! protein amino acid glycosylation
intersection_of: occurs_in GO:0005794 ! Golgi apparatus

[Term]
id: GO:0033581 ! protein amino acid galactosylation in Golgi
intersection_of: GO:0042125 ! protein amino acid galactosylation
intersection_of: occurs_in GO:0005794 ! Golgi apparatus

[Term]
id: GO:0032507 ! maintenance of protein location in cell
intersection_of: GO:0045185 ! maintenance of protein location
intersection_of: occurs_in GO:0005623 ! cell

[Term]
id: GO:0051882 ! mitochondrial depolarization
intersection_of: GO:0051899 ! membrane depolarization
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0010938 ! cytoplasmic microtubule depolymerization
intersection_of: GO:0007019 ! microtubule depolymerization
intersection_of: occurs_in GO:0005737 ! cytoplasm

[Term]
id: GO:0042775 ! mitochondrial ATP synthesis coupled electron transport
intersection_of: GO:0042773 ! ATP synthesis coupled electron transport
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0060404 ! axonemal microtubule depolymerization
intersection_of: GO:0007019 ! microtubule depolymerization
intersection_of: occurs_in GO:0005930 ! axoneme

[Term]
id: GO:0070124 ! mitochondrial translational initiation
intersection_of: GO:0006413 ! translational initiation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070125 ! mitochondrial translational elongation
intersection_of: GO:0006414 ! translational elongation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070126 ! mitochondrial translational termination
intersection_of: GO:0006415 ! translational termination
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070143 ! mitochondrial alanyl-tRNA aminoacylation
intersection_of: GO:0006419 ! alanyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070144 ! mitochondrial arginyl-tRNA aminoacylation
intersection_of: GO:0006420 ! arginyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070145 ! mitochondrial asparaginyl-tRNA aminoacylation
intersection_of: GO:0006421 ! asparaginyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070146 ! mitochondrial aspartyl-tRNA aminoacylation
intersection_of: GO:0006422 ! aspartyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070147 ! mitochondrial cysteinyl-tRNA aminoacylation
intersection_of: GO:0006423 ! cysteinyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070148 ! mitochondrial glutaminyl-tRNA aminoacylation
intersection_of: GO:0006425 ! glutaminyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070149 ! mitochondrial glutamyl-tRNA aminoacylation
intersection_of: GO:0006424 ! glutamyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070150 ! mitochondrial glycyl-tRNA aminoacylation
intersection_of: GO:0006426 ! glycyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070151 ! mitochondrial histidyl-tRNA aminoacylation
intersection_of: GO:0006427 ! histidyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070152 ! mitochondrial isoleucyl-tRNA aminoacylation
intersection_of: GO:0006428 ! isoleucyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070153 ! mitochondrial leucyl-tRNA aminoacylation
intersection_of: GO:0006429 ! leucyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070154 ! mitochondrial lysyl-tRNA aminoacylation
intersection_of: GO:0006430 ! lysyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070155 ! mitochondrial methionyl-tRNA aminoacylation
intersection_of: GO:0006431 ! methionyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070156 ! mitochondrial phenylalanyl-tRNA aminoacylation
intersection_of: GO:0006432 ! phenylalanyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070157 ! mitochondrial prolyl-tRNA aminoacylation
intersection_of: GO:0006433 ! prolyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070158 ! mitochondrial seryl-tRNA aminoacylation
intersection_of: GO:0006434 ! seryl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070159 ! mitochondrial threonyl-tRNA aminoacylation
intersection_of: GO:0006435 ! threonyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070183 ! mitochondrial tryptophanyl-tRNA aminoacylation
intersection_of: GO:0006436 ! tryptophanyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070184 ! mitochondrial tyrosyl-tRNA aminoacylation
intersection_of: GO:0006437 ! tyrosyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070185 ! mitochondrial valyl-tRNA aminoacylation
intersection_of: GO:0006438 ! valyl-tRNA aminoacylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070899 ! mitochondrial tRNA wobble uridine modification
intersection_of: GO:0002098 ! wobble uridine modification
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070900 ! mitochondrial tRNA modification
intersection_of: GO:0006400 ! tRNA modification
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070901 ! mitochondrial tRNA methylation
intersection_of: GO:0030488 ! tRNA methylation
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070902 ! mitochondrial tRNA pseudouridine synthesis
intersection_of: GO:0031119 ! tRNA pseudouridine synthesis
intersection_of: occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0070903 ! mitochondrial tRNA thio-modification
intersection_of: GO:0034227 ! tRNA thio-modification
intersection_of: occurs_in GO:0005739 ! mitochondrion

!! Obol results May 2011, using conservative Reladj pattern:

[Term]
id: GO:0000957  ! mitochondrial RNA catabolic process
intersection_of: GO:0006401  ! RNA catabolic process
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0000958  ! mitochondrial mRNA catabolic process
intersection_of: GO:0006402  ! mRNA catabolic process
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0000959  ! mitochondrial RNA metabolic process
intersection_of: GO:0016070  ! RNA metabolic process
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0000963  ! mitochondrial RNA processing
intersection_of: GO:0006396  ! RNA processing
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0000964  ! mitochondrial RNA 5'-end processing
intersection_of: GO:0000966  ! RNA 5'-end processing
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0000965  ! mitochondrial RNA 3'-end processing
intersection_of: GO:0031123  ! RNA 3'-end processing
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0002753  ! cytoplasmic pattern recognition receptor signaling pathway
intersection_of: GO:0002221  ! pattern recognition receptor signaling pathway
intersection_of: occurs_in GO:0005737  ! cytoplasm

[Term]
id: GO:0002818  ! intracellular defense response
intersection_of: GO:0006952  ! defense response
intersection_of: occurs_in GO:0005622  ! intracellular

[Term]
id: GO:0005746  ! mitochondrial respiratory chain
intersection_of: GO:0022900  ! electron transport chain
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0007006  ! mitochondrial membrane organization
intersection_of: GO:0016044  ! cellular membrane organization
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0007035  ! vacuolar acidification
intersection_of: GO:0045851  ! pH reduction
intersection_of: occurs_in GO:0005773  ! vacuole

[Term]
id: GO:0007036  ! vacuolar calcium ion homeostasis
intersection_of: GO:0055074  ! calcium ion homeostasis
intersection_of: occurs_in GO:0005773  ! vacuole

[Term]
id: GO:0019093  ! mitochondrial RNA localization
intersection_of: GO:0006403  ! RNA localization
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0033615  ! mitochondrial proton-transporting ATP synthase complex assembly
intersection_of: GO:0043461  ! proton-transporting ATP synthase complex assembly
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0033617  ! mitochondrial respiratory chain complex IV assembly
intersection_of: GO:0008535  ! respiratory chain complex IV assembly
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0034551  ! mitochondrial respiratory chain complex III assembly
intersection_of: GO:0017062  ! respiratory chain complex III assembly
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0034553  ! mitochondrial respiratory chain complex II assembly
intersection_of: GO:0034552  ! respiratory chain complex II assembly
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0035556  ! intracellular signal transduction
intersection_of: GO:0007165  ! signal transduction
intersection_of: occurs_in GO:0005622  ! intracellular

[Term]
id: GO:0035694  ! mitochondrial protein catabolic process
intersection_of: GO:0030163  ! protein catabolic process
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0042776  ! mitochondrial ATP synthesis coupled proton transport
intersection_of: GO:0015986  ! ATP synthesis coupled proton transport
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0051452  ! intracellular pH reduction
intersection_of: GO:0045851  ! pH reduction
intersection_of: occurs_in GO:0005622  ! intracellular

[Term]
id: GO:0051454  ! intracellular pH elevation
intersection_of: GO:0045852  ! pH elevation
intersection_of: occurs_in GO:0005622  ! intracellular

[Term]
id: GO:0051480  ! cytosolic calcium ion homeostasis
intersection_of: GO:0055074  ! calcium ion homeostasis
intersection_of: occurs_in GO:0005829  ! cytosol

[Term]
id: GO:0051560  ! mitochondrial calcium ion homeostasis
intersection_of: GO:0055074  ! calcium ion homeostasis
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0065002  ! intracellular protein transmembrane transport
intersection_of: GO:0071806  ! protein transmembrane transport
intersection_of: occurs_in GO:0005622  ! intracellular

[Term]
id: GO:0070072  ! vacuolar proton-transporting V-type ATPase complex assembly
intersection_of: GO:0070070  ! proton-transporting V-type ATPase complex assembly
intersection_of: occurs_in GO:0005773  ! vacuole

[Term]
id: GO:0071026  ! cytoplasmic RNA surveillance
intersection_of: GO:0071025  ! RNA surveillance
intersection_of: occurs_in GO:0005737  ! cytoplasm

[Term]
id: GO:0072684  ! mitochondrial tRNA 3'-trailer cleavage, endonucleolytic
intersection_of: GO:0034414  ! tRNA 3'-trailer cleavage, endonucleolytic
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0080156  ! mitochondrial mRNA modification
intersection_of: GO:0016556  ! mRNA modification
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0080162  ! intracellular auxin transport
intersection_of: GO:0060918  ! auxin transport
intersection_of: occurs_in GO:0005622  ! intracellular

[Term]
id: GO:0090139  ! mitochondrial DNA packaging
intersection_of: GO:0006323  ! DNA packaging
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0090142  ! mitochondrial chromosome segregation
intersection_of: GO:0007059  ! chromosome segregation
intersection_of: occurs_in GO:0005739  ! mitochondrion

[Term]
id: GO:0090144  ! mitochondrial nucleoid organization
intersection_of: GO:0090143  ! nucleoid organization
intersection_of: occurs_in GO:0005739  ! mitochondrion


!! 

!! New relations to go into GO: 

[Typedef]
id: occurs_in
name: occurs in
xref: BFO:0000066
namespace: gene_ontology