remark: internal cross-products between BP and CC. Partially vetted by cjm
! terms with genus anatomical structure formation could be changed to
! cellular component assembly, depending on the CC organization work
! (marked 'ok*' for now, since they're consistent with current
! parentage (2008-11-13)
!
! 2008-12-03: same holds for anatomical structure morphogenesis
!
! must clear up OBO_REL:results_in_organization_of issue - current specs for
! results_in_structural_organization_of don't work; more on wiki; xps
! marked 'ok' for now, because they will be fine once the relation
! issue is sorted
!
! for transport terms with a comment about occurs_in, could change to transport_involving
!
! 2008-12-21: CJM - changed results_in_removal_of relations
! changed r_i_developmental_progression_of to r_i_maturation_of for maturation terms
! made a few fixes as suggested by Midori, these are annotated as comments in this file

!![Term]
!!id: GO:0000032 ! cell wall mannoprotein biosynthetic process
!!intersection_of: GO:0006057 ! mannoprotein biosynthetic process
!!intersection_of: OBO_REL:occurs_in GO:0005618 ! cell wall
!! confirm this; the term may mean biosynthesis of mannoproteins destined for the cell wall
!! moved to bp-xp-self 2009-05-07

[Term]
id: GO:0000046 ! autophagic vacuole fusion
intersection_of: GO:0009987 ! cellular process
intersection_of: OBO_REL:results_in_fusion_of GO:0005776 ! autophagic vacuole
! ok, but doesn't capture that an autophagic vacuole fuses with a (non-autophagic, bog-standard) vacuole ... any way to do this with xps?
! would this work?
!   intersection_of: GO:0048284 ! organelle fusion
!   intersection_of: OBO_REL:results_in_fusion_of GO:0005776 ! autophagic vacuole
!   intersection_of: OBO_REL:results_in_fusion_of GO:0005773 ! vacuole ???
! could use GO:0009987 as genus if organelle fusion is too specific

[Term]
id: GO:0002753 ! cytoplasmic pattern recognition receptor signaling pathway
intersection_of: GO:0002221 ! pattern recognition receptor signaling pathway
intersection_of: OBO_REL:occurs_in GO:0005737 ! cytoplasm
!! probably ok, but confirm that 'cytoplasmic' refers to location of receptor, not type of pattern

!![Term]
!!id: GO:0006038 ! cell wall chitin biosynthetic process
!!intersection_of: GO:0006031 ! chitin biosynthetic process
!!intersection_of: OBO_REL:occurs_in GO:0005618 ! cell wall
!! confirm this; the term may mean biosynthesis of chitin destined for the cell wall
!! moved to bp-xp-self 2009-05-07

[Term]
id: GO:0006039 ! cell wall chitin catabolic process
intersection_of: GO:0006032 ! chitin catabolic process
intersection_of: OBO_REL:occurs_in GO:0005618 ! cell wall
!! probably ok

[Term]
id: GO:0006627 ! mitochondrial protein processing during import
intersection_of: GO:0016485 ! protein processing
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
!! probably ok; or maybe could say mito envelope?

[Term]
id: GO:0006843 ! mitochondrial citrate transport
intersection_of: GO:0015746 ! citrate transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005739 ! mitochondrion
!! use results_in_transport_involving? -- FIXED CJM 2010-01-20

[Term]
id: GO:0006847 ! plasma membrane acetate transport
intersection_of: GO:0006846 ! acetate transport
intersection_of: OBO_REL:results_in_transport_across GO:0005886 ! plasma membrane
! OBO_REL:results_in_transport_through GO:0005886 would be better, but results_in_transport_through isn't defined (just the ID and name are in ro_test.obo)
! -- FIXED CJM 2010-01-20

[Term]
id: GO:0006849 ! plasma membrane pyruvate transport
intersection_of: GO:0006848 ! pyruvate transport
intersection_of: OBO_REL:results_in_transport_across GO:0005886 ! plasma membrane
! OBO_REL:results_in_transport_through GO:0005886 would be better, but results_in_transport_through isn't defined (just the ID and name are in ro_test.obo)
! -- FIXED CJM 2010-01-20

[Term]
id: GO:0006850 ! mitochondrial pyruvate transport
intersection_of: GO:0006848 ! pyruvate transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005739 ! mitochondrion
!! use results_in_transport_involving?
! -- FIXED CJM 2010-01-20

[Term]
id: GO:0006851 ! mitochondrial calcium ion transport
intersection_of: GO:0006816 ! calcium ion transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005739 ! mitochondrion
!! use results_in_transport_involving?
! -- FIXED CJM 2010-01-20

! is this sufficient? TODO
[Term]
id: GO:0006900 ! membrane budding
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_formation_of GO:0031982 ! vesicle
! looks consistent with the text def; could perhaps use genus GO:0016044 membrane organization if it's not undesirably specific


[Term]
id: GO:0016182 ! synaptic vesicle budding from endosome
intersection_of: GO:0070142 ! synaptic vesicle budding
intersection_of: OBO_REL:results_in_transport_to_from_or_in GO:0005768 ! endosome
! TODO:
! GO:0016182 ! endosome to synaptic vesicle budding
!! what a yucky name! I'll check on this ...
!! renamed GO:0016182 to 'synaptic vesicle budding from endosome', and made some related changes
!! TODO use same relation as GO:0016197 ! endosome transport, but see comments for that term
! -- FIXED CJM 2010-01-20 - but needs checked


[Term]
id: GO:0007018 ! microtubule-based movement
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_along  GO:0005874 ! microtubule
!!intersection_of: OBO_REL:occurs_in  GO:0005874 ! microtubule
!! hmmm. OBO_REL:unfolds_around GO:0005874 might be better ...
!! FIXED

![Term]
!id: GO:0007027 ! negative regulation of microtubule depolymerization in axoneme
!intersection_of: GO:0007026 ! negative regulation of microtubule depolymerization
!intersection_of: OBO_REL:occurs_in GO:0005930 ! axoneme
!! probably ok, but get D&T to confirm.
!! actually, this is in xp_regulates -- CJM

[Term]
id: GO:0007034 ! vacuolar transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_to_from_or_in GO:0005773 ! vacuole
!! wrong; GO:0007034 means transport into, out of, or within vacuole
! -- FIXED CJM 2010-01-20

[Term]
id: GO:0007035 ! vacuolar acidification
intersection_of: GO:0045851 ! pH reduction
intersection_of: OBO_REL:occurs_in GO:0005773 ! vacuole
!! use results_in_transport_involving?
!! CJM - not sure what you mean here..
!! and now (feb. 2 '09) I can't remember myself ...
!! anyway, what I'd ask now is whether occurs_in vacuole allows for
!!   protons being pumped in from outside the vacuole; if so, it's fine
!! -- it doesn't preclude it, I don't think. The acidification process is confined
!!   within the vacuole (should it be lumen?).
!!   hmm, but if we were to add a has_part GO:0015992 ! proton transport, then
!!   this would be problematic because the transport process here necessarily extends outside.
!!   but if the acidification is regulated_by proton transport then all is good, because regulation
!!   doesn't imply containment. I say we just add it for now...

[Term]
id: GO:0007036 ! vacuolar calcium ion homeostasis
intersection_of: GO:0055074 ! calcium ion homeostasis
intersection_of: OBO_REL:occurs_in GO:0005773 ! vacuole
!! might be ok - does this cover the "or between a vacuole and its surroundings" part of the GO:0007036 def?

[Term]
id: GO:0007037 ! vacuolar phosphate transport
intersection_of: GO:0006817 ! phosphate transport
intersection_of: OBO_REL:results_in_transport_to_from_or_in GO:0005773 ! vacuole
!! use results_in_transport_involving?
! -- FIXED CJM 2010-01-20
!    there is a question here as to whether to be consistent about a primary axis; e.g. we could define this in xp_chebi, and use VT as genus.
!    logically it doesn't matter, the reasoned graph remains the same. but one might be 'nicer' from an aesthetic POV. Can always be changed...

[Term]
id: GO:0007041 ! lysosomal transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_to_from_or_in GO:0005764 ! lysosome
!!intersection_of: OBO_REL:results_in_transport_of GO:0005764 ! lysosome
!! wrong; GO:0007041 means transport into, out of, or within lysosome
! -- FIXED CJM 2010-01-20

[Term]
id: GO:0007045 ! hemi-adherens junction assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005925 ! focal adhesion
!! not sure; junction terms need work in both BP and CC

[Term]
id: GO:0007528 ! neuromuscular junction development
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_organization_of GO:0031594 ! neuromuscular junction
!!intersection_of: OBO_REL:results_in_complete_development_of GO:0031594 ! neuromuscular junction
!! why not parallel with parent synapse organization, i.e. genus GO:0022607? would be consistent with both BP and CC graphs 
!! Changed but needs checked - CJM
!! looks ok, as far as I can tell - mah
!! OK - maybe lets look at all organization/development CC terms en masse though...

[Term]
id: GO:0008088 ! axon cargo transport
intersection_of: GO:0007018 ! microtubule-based transport
intersection_of: OBO_REL:occurs_in GO:0030424 ! axon
!! intersection_of: OBO_REL:results_in_transport_along GO:0005874 ! microtubule -- we get this from the genus
!! another one where OBO_REL:unfolds_around GO:0005874 might be better for 2nd diff
!! FIXED --CJM
!! oops, I might've made it unclear, or made a mistake; 
!! I meant how about unfolds_around axon? since "in" sounds like it means on the inside of a compartment (or is that a misinterpretation?)

!!!!! I made it this far --CJM !!!!
!!!!! Second pass, 2010-01-20, I'm going in deeper... -- CJM !!!!

[Term]
id: GO:0008608 ! attachment of spindle microtubules to kinetochore
intersection_of: GO:0008150 ! biological_process
intersection_of: OBO_REL:results_in_connection_of GO:0005819 ! spindle
intersection_of: OBO_REL:results_in_connection_of GO:0000776 ! kinetochore
! ok, I think

[Term]
id: GO:0009272 ! fungal-type cell wall biogenesis
intersection_of: GO:0044085 ! cellular component biogenesis
intersection_of: OBO_REL:results_in_formation_of GO:0009277 ! fungal-type cell wall
!! probably ok, but check assembly vs. organization vs. biogenesis

[Term]
id: GO:0009273 ! peptidoglycan-based cell wall biogenesis
intersection_of: GO:0044085 ! cellular component biogenesis
intersection_of: OBO_REL:results_in_formation_of GO:0009274 ! peptidoglycan-based cell wall
!! probably ok, but check assembly vs. organization vs. biogenesis

[Term]
id: GO:0009296 ! flagellum biogenesis
intersection_of: GO:0044085 ! cellular component biogenesis
intersection_of: OBO_REL:results_in_formation_of GO:0019861 ! flagellum
!! probably ok, but check assembly vs. organization vs. biogenesis

[Term]
id: GO:0009832 ! plant-type cell wall biogenesis
intersection_of: GO:0044085 ! cellular component biogenesis
intersection_of: OBO_REL:results_in_formation_of GO:0009505 ! plant-type cell wall
!! probably ok, but check assembly vs. organization vs. biogenesis

[Term]
id: GO:0010020 ! chloroplast fission
intersection_of: GO:0048285 ! organelle fission
intersection_of: OBO_REL:results_in_division_of GO:0009507 ! chloroplast
!! ok, but why genus GO:0048285 here and not for other organelle fission terms?
! FIXED ---CJM - others are now consistent

[Term]
id: GO:0010215 ! cellulose microfibril organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_organization_of GO:0009549 ! cellulose microfibril
!! BP & CC look inconsistent; ask plant people

!https://sourceforge.net/tracker/?func=detail&atid=440764&aid=2026818&group_id=36855
![Term]
!id: GO:0010258 ! NADH dehydrogenase complex (plastoquinone) assembly
!intersection_of: GO:0022607 ! cellular component assembly
!intersection_of: OBO_REL:results_in_formation_of GO:0030964 ! NADH dehydrogenase complex
!! updated SF link

[Term]
id: GO:0015679 ! plasma membrane copper ion transport
intersection_of: GO:0006825 ! copper ion transport
intersection_of: OBO_REL:results_in_transport_across GO:0005886 ! plasma membrane
!! see comment on GO:0006847
! -- FIXED CJM 2010-01-20


![Term]
!id: GO:0015776 ! capsular polysaccharide transport
!intersection_of: GO:0015774 ! polysaccharide transport
!intersection_of: OBO_REL:occurs_in GO:0042603 ! capsule
!! might be undesirable -- according to GO:0015776 def, capsular polysacch refers to the type of carb moved into, out of, within or btw cells, not to a constraint on where the stuff moves

[Term]
id: GO:0015842 ! synaptic vesicle amine transport
intersection_of: GO:0015837 ! amine transport
intersection_of: OBO_REL:results_in_transport_to_from_or_in GO:0008021 ! synaptic vesicle
!! genus ok, but diff is wrong -- amines get transported into or out of (or within??) synaptic vesicles
! -- FIXED CJM 2010-01-20

[Term]
id: GO:0015911 ! plasma membrane long-chain fatty acid transport
intersection_of: GO:0015909 ! long-chain fatty acid transport
intersection_of: OBO_REL:results_in_transport_across GO:0005886 ! plasma membrane
!! see comment on GO:0006847
! -- FIXED CJM 2010-01-20

[Term]
id: GO:0015919 ! peroxisomal membrane transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_across GO:0005778 ! peroxisomal membrane
!! see comment on GO:0006847; also, results_in_transport_involving isn't in ro.obo or ro_test.obo
! -- FIXED CJM 2010-01-20

[Term]
id: GO:0016079 ! synaptic vesicle exocytosis
intersection_of: GO:0006887 ! exocytosis
intersection_of: OBO_REL:occurs_in GO:0045202 ! synapse
intersection_of: OBO_REL:results_in_transport_of GO:0008021 ! synaptic vesicle
!! genus & 1st diff ok; the synaptic vesicle is transported, so 2nd diff is probably ok, but the xp def is missing the fact the synaptic vesicle fuses with the presynaptic membrane. is that ok?

[Term]
id: GO:0016081 ! synaptic vesicle docking during exocytosis
intersection_of: GO:0006904 ! vesicle docking during exocytosis
intersection_of: OBO_REL:results_in_transport_of GO:0008021 ! synaptic vesicle
!! maybe ... transport_of vesicle is maybe not perfect, since in this process the vesicle becomes attached to the membrane; maybe a couple of results_in_connection_of statements would be better

[Term]
id: GO:0016183 ! synaptic vesicle coating
intersection_of: GO:0006901 ! vesicle coating
intersection_of: OBO_REL:occurs_in GO:0045202 ! synapse
!! maybe ... must check where vesicles coat, and whether that's considered part of the synapse

[Term]
id: GO:0016197 ! endosome transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_to_from_or_in GO:0005768 ! endosome
!! wrong; GO:0016197 means transport into, out of, or within endosome
! -- FIXED CJM 2010-01-20 - however, double check required. def says: 'or mediated by an endosome'. have to check 'within' -
! two senses: (a) cargo static within/relative to a moving container
!             (b) cargo moving relative to the boundaries of a static (or moving) container
!                 (e.g. from one side to another)
! there are actually 2x2 possibilities. It's unlikely we need a relation for each. However, we should be sure which cases
! we need to discriminate against and then define the most general relation. It seems there are two cases:
! things like cytoplasmic transport, where the goal is to go from one place to another in the cytoplasm, and things like endosome transport,
! where the cargo is a relatively passive cargo??
! I think we should just go with results_in_transport_to_from_or_in for now, and define results_in_transport_within in the most general way

[Term]
id: GO:0016240 ! autophagic vacuole docking
intersection_of: GO:0022406 ! membrane docking
intersection_of: OBO_REL:results_in_connection_of GO:0005776 ! autophagic vacuole
intersection_of: OBO_REL:results_in_connection_of GO:0016020 ! membrane
!! probably ok, but GO:0016240 isn't defined

[Term]
id: GO:0016482 ! cytoplasmic transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005737 ! cytoplasm
!! use results_in_transport_involving?
! -- FIXED CJM 2010-01-20

[Term]
id: GO:0016559 ! peroxisome fission
intersection_of: GO:0048285 ! organelle fission
intersection_of: OBO_REL:results_in_division_of GO:0005777 ! peroxisome
! is intersection_of: GO:0048285 ! organelle fission undesirably specific? if so, ok as is
! FIXED ---CJM

!!   [Term]
!!   id: GO:0016568 ! chromatin modification
!!   intersection_of: GO:0009987 ! cellular process
!!   intersection_of: OBO_REL:has_input GO:0000785 ! chromatin
!!   ! ok

![Term]
!id: GO:0019070 ! viral genome maturation
!intersection_of: GO:0021700 ! developmental maturation
!intersection_of: OBO_REL:results_in_maturation_of GO:0019015 ! viral genome
!! term has a fairly unhelpful text def

[Term]
id: GO:0019750 ! chloroplast transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_localization_of GO:0009507 ! chloroplast
! changed diff rel; now ok (this one's different from most other organelle x transport terms)

![Term]
!id: GO:0022614 ! membrane to membrane docking
!relationship: OBO_REL:results_in_connection_of GO:0016020 ! membrane
!! no genus?!?

![Term]
!id: GO:0030398 ! peroxisomal membrane disassembly
! intersection_of: GO:0030397 ! membrane disassembly
! intersection_of: OBO_REL:occurs_in GO:0005777 ! peroxisome
! this seems better biologically:
!  intersection_of: GO:0022411 ! cellular component disassembly
!  intersection_of: OBO_REL:results_in_breakdown_of GO:0005778 ! peroxisomal membrane

![Term]
!id: GO:0030999 ! linear element formation
!intersection_of: GO:0022607 ! cellular component assembly
!intersection_of: OBO_REL:results_in_formation_of GO:0030998 ! linear element
!! probably could use genus GO:0022607 ! cellular component assembly
! -- changed CJM 2010-01-20
!  BUT this probably still isn't right. There is no parentage to CC assembly in the current ontology..

![Term]
!id: GO:0031103 ! axon regeneration
!intersection_of: GO:0031099 ! regeneration
!intersection_of: OBO_REL:results_in_developmental_progression_of GO:0030424 ! axon
!! I wouldn't use this, because GO has regeneration (GO:0031099) defined as happening at the tissue or organ level
!! -- in that case why is regeneration an is_a ancestor?? -- CJM 2010-01-20

![Term]
!id: GO:0031104 ! dendrite regeneration
!intersection_of: GO:0031099 ! regeneration
!intersection_of: OBO_REL:results_in_developmental_progression_of GO:0030425 ! dendrite
!! I wouldn't use this, because GO has regeneration (GO:0031099) defined as happening at the tissue or organ level
!! -- in that case why is regeneration an is_a ancestor?? -- CJM 2010-01-20

!![Term]
!!id: GO:0031506 ! cell wall glycoprotein biosynthetic process
!!intersection_of: GO:0009101 ! glycoprotein biosynthetic process
!!intersection_of: OBO_REL:occurs_in GO:0005618 ! cell wall
!! confirm this; the term may mean biosynthesis of glycoproteins destined for the cell wall
!! moved to bp-xp-self 2009-05-07

[Term]
id: GO:0031556 ! transcriptional attenuation by ribosome
intersection_of: GO:0031555  !transcriptional attenuation
intersection_of: OBO_REL:mediated_by GO:0005840 ! ribosome
!! ok, I think

!![Term]
!!id: GO:0032022 ! multicellular pellicle formation
!!intersection_of: GO:0010926 ! anatomical structure formation
!!intersection_of: OBO_REL:results_in_formation_of GO:0020039 ! pellicle
! rejected -- this turns out to be a completely different sense of 'pellicle'; GO:0032022 renamed

[Term]
id: GO:0032468 ! Golgi calcium ion homeostasis
intersection_of: GO:0055074 ! calcium ion homeostasis
intersection_of: OBO_REL:occurs_in GO:0005794 ! Golgi apparatus
!! might be ok - does this cover the "or between the Golgi and its surroundings" part of the GO:0032468 def?
!! -- no not really. wait on this one. lets come up with a general solution for all homeostasis -- CJM 2010-01-20

[Term]
id: GO:0032469 ! endoplasmic reticulum calcium ion homeostasis
intersection_of: GO:0055074 ! calcium ion homeostasis
intersection_of: OBO_REL:occurs_in GO:0005783 ! endoplasmic reticulum
!! might be ok - does this cover the "or between the ER and its surroundings" part of the GO:0032469 def?
!! -- no not really. wait on this one. lets come up with a general solution for all homeostasis -- CJM 2010-01-20

[Term]
id: GO:0032472 ! Golgi calcium ion transport
intersection_of: GO:0006816 ! calcium ion transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005794 ! Golgi apparatus
!! use results_in_transport_involving?
! FIXED  -- CJM 2010-01-20

[Term]
id: GO:0042052 ! rhabdomere development
!!intersection_of: GO:0032502 ! developmental process
!!intersection_of: OBO_REL:results_in_complete_development_of GO:0016028 ! rhabdomere
!! I guess developmental process is biologically correct, given the path via photoreceptor cell differentiation, neuron development, etc. But this could also work, based on the def and the organelle organization parent:
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_organization of GO:0016028 ! rhabdomere
! DONE -- CJM

[Term]
id: GO:0042545 ! cell wall modification
intersection_of: GO:0009987 ! cellular process
intersection_of: OBO_REL:has_input GO:0005618 ! cell wall
!! cell wall modification doesn't have a path to metabolic process at present, but this xp doesn't look wrong
!! Changed -- CJM. Still not sure about this, the def looks underconstrained

[Term]
id: GO:0042714 ! dosage compensation complex assembly
intersection_of: GO:0065003 ! macromolecular complex assembly
!intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0046536 ! dosage compensation complex
! now ok; ontology fixed too

[Term]
id: GO:0042776 ! mitochondrial ATP synthesis coupled proton transport
intersection_of: GO:0015986 ! ATP synthesis coupled proton transport
intersection_of: OBO_REL:results_in_transport_across GO:0031966 ! mitochondrial membrane
!! not sure, because GO:0042776 is transport across the mitochondrial membrane
! FIXED  -- CJM 2010-01-20

[Term]
id: GO:0042777 ! plasma membrane ATP synthesis coupled proton transport
intersection_of: GO:0015986 ! ATP synthesis coupled proton transport
intersection_of: OBO_REL:results_in_transport_across GO:0005886 ! plasma membrane
!! not sure; GO:0042777 is transport across plasma membrane
! FIXED  -- CJM 2010-01-20

[Term]
id: GO:0043572 ! plastid fission
intersection_of: GO:0048285 ! organelle fission
intersection_of: OBO_REL:results_in_division_of GO:0009536 ! plastid
! is intersection_of: GO:0048285 ! organelle fission undesirably specific? if so, ok as is
! FIXED ---CJM

[Term]
id: GO:0043573 ! leucoplast fission
intersection_of: GO:0048285 ! organelle fission
intersection_of: OBO_REL:results_in_division_of GO:0009516 ! leucoplast
! is intersection_of: GO:0048285 ! organelle fission undesirably specific? if so, ok as is
! FIXED ---CJM

[Term]
id: GO:0043574 ! peroxisomal transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005777 ! peroxisome
!! use results_in_transport_involving?
! FIXED  -- CJM 2010-01-20

[Term]
id: GO:0044406 ! adhesion to host
intersection_of: GO:0022610 ! biological adhesion
intersection_of: OBO_REL:results_in_connection_of GO:0018995 ! host
!! looks ok, but have Jane check

[Term]
id: GO:0045016 ! mitochondrial magnesium ion transport
intersection_of: GO:0015693 ! magnesium ion transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005739 ! mitochondrion
!! use results_in_transport_involving?
! FIXED  -- CJM 2010-01-20

[Term]
id: GO:0045226 ! extracellular polysaccharide biosynthetic process
intersection_of: GO:0000271 ! polysaccharide biosynthetic process
intersection_of: OBO_REL:occurs_in GO:0005576 ! extracellular region
!! no; def says it's synthesis of polysaccharides destined for the extracellular region
!! move to bp-xp-self? would need genus term ...

![Term]
!id: GO:0045227 ! capsule polysaccharide biosynthetic process
!intersection_of: GO:0000271 ! polysaccharide biosynthetic process
!intersection_of: part_of GO:0045230 ! capsule organization
!! no, because we've now defined organization as excluding component synthesis

![Term]
!id: GO:0045228 ! slime layer polysaccharide biosynthetic process
!intersection_of: GO:0000271 ! polysaccharide biosynthetic process
!intersection_of: part_of GO:0045231 ! slime layer organization
!! no, because we've now defined organization as excluding component synthesis

! CHECK
[Term]
id: GO:0046467 ! membrane lipid biosynthetic process
intersection_of: GO:0008610 ! lipid biosynthetic process
intersection_of: OBO_REL:occurs_in GO:0016020 ! membrane
!! confirm this; the term may mean biosynthesis of lipids destined for the membrane

[Term]
id: GO:0046797 ! viral procapsid maturation
intersection_of: GO:0021700 ! developmental maturation
intersection_of: OBO_REL:results_in_maturation_of GO:0046729 ! viral procapsid
!! looks ok, but have virus wg check

[Term]
id: GO:0046931 ! pore complex biogenesis
intersection_of: GO:0044085 ! cellular component biogenesis
intersection_of: OBO_REL:results_in_formation_of GO:0046930 ! pore complex
!! check organization vs biogenesis

[Term]
id: GO:0048193 ! Golgi vesicle transport
intersection_of: GO:0016192 ! vesicle-mediated transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005794 ! Golgi apparatus
!! better to say this, if allowable:
!! intersection_of: OBO_REL:results_in_transport_involving GO:0005794 ! Golgi apparatus
!! intersection_of: OBO_REL:mediated_by GO:0031982 ! vesicle
! FIXED  -- CJM 2010-01-20 (mediated-by comes from genus)

[Term]
id: GO:0048250 ! mitochondrial iron ion transport
intersection_of: GO:0006826 ! iron ion transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005739 ! mitochondrion
!! use results_in_transport_involving?
! FIXED  -- CJM 2010-01-20

[Term]
id: GO:0048488 ! synaptic vesicle endocytosis
intersection_of: GO:0006897 ! endocytosis
intersection_of: OBO_REL:occurs_in GO:0045202 ! synapse
!! might be ok ...
!! -- let's do all tricky synapse ones in one batch.. CJM

[Term]
id: GO:0048489 ! synaptic vesicle transport
intersection_of: GO:0016192 ! vesicle-mediated transport
intersection_of: OBO_REL:occurs_in GO:0045202 ! synapse
!! maybe ok, but check on early steps


[Term]
id: GO:0048757 ! pigment granule maturation
intersection_of: GO:0021700 ! developmental maturation
intersection_of: OBO_REL:results_in_maturation_of GO:0048770 ! pigment granule
!! probably ok

[Term]
id: GO:0051169 ! nuclear transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_involving GO:0005634 ! nucleus
!! use results_in_transport_involving?
! FIXED  -- CJM 2010-01-20

[Term]
id: GO:0051205 ! protein insertion into membrane
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:results_in_localization_of GO:0016020 ! membrane
! dif is wrong, but I'm not sure what to use ... maybe results_in_transport to GO::0016020 ! membrane!

!![Term]
!!id: GO:0051278 ! fungal-type cell wall polysaccharide biosynthetic process
!!intersection_of: GO:0000271 ! polysaccharide biosynthetic process
!!intersection_of: OBO_REL:occurs_in GO:0009277 ! fungal-type cell wall
!! confirm this; the term may mean biosynthesis of polysaccharides destined for the cell wall
!! moved to bp-xp-self 2009-05-07

[Term]
id: GO:0051313 ! attachment of spindle microtubules to chromosome
intersection_of: GO:0008150 ! biological_process
intersection_of: OBO_REL:results_in_connection_of GO:0005819 ! spindle
intersection_of: OBO_REL:results_in_connection_of GO:0005694 ! chromosome
!! ok, pending outcome of MT attachment discussion on email  + Sf

[Term]
id: GO:0051426 ! spindle pole body maturation
intersection_of: GO:0021700 ! developmental maturation
intersection_of: OBO_REL:results_in_maturation_of GO:0005816 ! spindle pole body
!! maybe ok

[Term]
id: GO:0051480 ! cytosolic calcium ion homeostasis
intersection_of: GO:0055074 ! calcium ion homeostasis
intersection_of: OBO_REL:occurs_in GO:0005829 ! cytosol
!! might be ok - does this cover the "or between the cytosol and its surroundings" part of the GO:0051480 def?
!! -- no, see previous cmnts. CJM

[Term]
id: GO:0051560 ! mitochondrial calcium ion homeostasis
intersection_of: GO:0055074 ! calcium ion homeostasis
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
!! might be ok - does this cover the "or between the mitochondrion and its surroundings" part of the GO:0051560 def?
!! -- no, see previous cmnts. CJM

[Term]
id: GO:0051563 ! smooth endoplasmic reticulum calcium ion homeostasis
intersection_of: GO:0055074 ! calcium ion homeostasis
intersection_of: OBO_REL:occurs_in GO:0005790 ! smooth endoplasmic reticulum
!! might be ok - does this cover the "or between the smooth ER and its surroundings" part of the GO:0051563 def?
!! -- no, see previous cmnts. CJM

!![Term]
!!id: GO:0052324 ! cell wall cellulose biosynthetic process
!!intersection_of: GO:0030244 ! cellulose biosynthetic process
!!intersection_of: OBO_REL:occurs_in GO:0005618 ! cell wall
!! confirm this; the term may mean biosynthesis of cellulose destined for the cell wall
!! moved to bp-xp-self 2009-05-07

[Term]
id: GO:0006968 ! cellular defense response
intersection_of: GO:0006952 ! defense response
intersection_of: OBO_REL:mediated_by GO:0005623 ! cell
!! ok, I think; ask Alex

[Term]
id: GO:0015841 ! chromaffin granule amine transport
intersection_of: GO:0015837 ! amine transport
intersection_of: OBO_REL:results_in_transport_within GO:0042583 ! chromaffin granule
!! no def for GO:0015841

[Term]
id: GO:0031532 ! actin cytoskeleton reorganization
intersection_of: GO:0016043 ! cellular component organization
!intersection_of: GO:0032502 ! developmental process
intersection_of: OBO_REL:results_in_remodeling_of GO:0015629 ! actin cytoskeleton
!! cellular component organization probably better
!! DONE -- CJM

[Term]
id: GO:0006338 ! chromatin remodeling
intersection_of: GO:0016043 ! cellular component organization
!intersection_of: GO:0032502 ! developmental process
intersection_of: OBO_REL:results_in_remodeling_of GO:0000785 ! chromatin
!! cellular component organization probably better
!! DONE -- CJM

!! made it as far as here 2010-01-20 CJM !!

[Term]
id: GO:0009768 ! photosynthesis, light harvesting in photosystem I
intersection_of: GO:0009765 ! photosynthesis, light harvesting
intersection_of: OBO_REL:occurs_in GO:0009522 ! photosystem I
!! not sure -- occurs_in seems a bit odd for something that happens "in" a protein complex

[Term]
id: GO:0009769 ! photosynthesis, light harvesting in photosystem II
intersection_of: GO:0009765 ! photosynthesis, light harvesting
intersection_of: OBO_REL:occurs_in GO:0009523 ! photosystem II
!! not sure -- occurs_in seems a bit odd for something that happens "in" a protein complex

[Term]
id: GO:0009770 ! primary charge separation in photosystem I
intersection_of: GO:0009766 ! primary charge separation
intersection_of: OBO_REL:occurs_in GO:0009522 ! photosystem I
!! not sure -- occurs_in seems a bit odd for something that happens "in" a protein complex

[Term]
id: GO:0009771 ! primary charge separation in photosystem II
intersection_of: GO:0009766 ! primary charge separation
intersection_of: OBO_REL:occurs_in GO:0009523 ! photosystem II
!! not sure -- occurs_in seems a bit odd for something that happens "in" a protein complex

!! todo: check - unfolds_around?
[Term]
id: GO:0014730 ! skeletal muscle regeneration at neuromuscular junction
intersection_of: GO:0043403 ! skeletal muscle regeneration
intersection_of: OBO_REL:occurs_in GO:0031594 ! neuromuscular junction
!! must think about GO:0014730 def - may have to ask muscle group for clarification

[Term]
id: GO:0014808 ! release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
intersection_of: GO:0051209 ! release of sequestered calcium ion into cytosol
intersection_of: OBO_REL:mediated_by GO:0016529 ! sarcoplasmic reticulum
!! this is release, i.e. transport, from the sarcoplasmic reticulum

[Term]
id: GO:0014814 ! axon regeneration at neuromuscular junction
intersection_of: GO:0031103 ! axon regeneration
intersection_of: OBO_REL:occurs_in GO:0031594 ! neuromuscular junction
!! will work same way as GO:0014730 xp

[Term]
id: GO:0000956 ! nuclear-transcribed mRNA catabolic process
intersection_of: GO:0006402 ! mRNA catabolic process
intersection_of: OBO_REL:occurs_in GO:0005634 ! nucleus
!! no, 'nuclear-transcribed' refers only to site of transcription; the mRNA may be in the cytoplasm when it's degraded

[Term]
id: GO:0000957 ! mitochondrial RNA catabolic process
intersection_of: GO:0006401 ! RNA catabolic process
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
!! I think this is OK, but double-check

[Term]
id: GO:0000958 ! mitochondrial mRNA catabolic process
intersection_of: GO:0006402 ! mRNA catabolic process
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
!! I think this is OK, but double-check

[Term]
id: GO:0000959 ! mitochondrial RNA metabolic process
intersection_of: GO:0016070 ! RNA metabolic process
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
!! I think this is OK, but double-check

[Term]
id: GO:0000963 ! mitochondrial RNA processing
intersection_of: GO:0006396 ! RNA processing
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
!! I think this is OK, but double-check

[Term]
id: GO:0000964 ! mitochondrial RNA 5'-end processing
intersection_of: GO:0000966 ! RNA 5'-end processing
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
!! I think this is OK, but double-check

[Term]
id: GO:0000965 ! mitochondrial RNA 3'-end processing
intersection_of: GO:0031123 ! RNA 3'-end processing
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
!! I think this is OK, but double-check

[Term]
id: GO:0006610 ! ribosomal protein import into nucleus
intersection_of: GO:0006606 ! protein import into nucleus
intersection_of: OBO_REL:occurs_in GO:0005840 ! ribosome
!! no, this is protein transport from cytoplasm to nucleus; the proteins are destined to become part of the ribosome

[Term]
id: GO:0033365 ! protein localization in organelle
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:occurs_in GO:0043226 ! organelle
!! not sure - GO:0033365 def says "transported to or maintained in", i.e. includes results_in_transport_to; change std def or xp?

[Term]
id: GO:0033366 ! protein localization in secretory granule
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:occurs_in GO:0030141 ! secretory granule
!! not sure - GO:0033366 def says "transported to or maintained in", i.e. includes results_in_transport_to; change std def or xp?

[Term]
id: GO:0033575 ! protein amino acid glycosylation at cell surface
intersection_of: GO:0006486 ! protein amino acid glycosylation
intersection_of: OBO_REL:unfolds_around GO:0009986 ! cell surface
!! don't think unfolds_around sounds right -- the glycosylation process doesn't contain the whole cell surface; it's closer to occurs_in, except that it's not exactly "inside" the cell surface ...

[Term]
id: GO:0033580 ! protein amino acid galactosylation at cell surface
intersection_of: GO:0042125 ! protein amino acid galactosylation
intersection_of: OBO_REL:unfolds_around GO:0009986 ! cell surface
!! same problem as GO:0033575 xp

[Term]
id: GO:0034067 ! protein localization in Golgi apparatus
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:occurs_in GO:0005794 ! Golgi apparatus
!! not sure - GO:0033365 def says "transported to or maintained in", i.e. includes results_in_transport_to; change std def or xp?

[Term]
id: GO:0034382 ! chylomicron remnant clearance
intersection_of: GO:0032984 ! macromolecular complex disassembly
intersection_of: OBO_REL:results_in_breakdown_of GO:0034360 ! chylomicron remnant
!!intersection_of: OBO_REL:results_in_removal_of GO:0034360 ! chylomicron remnant
!! probably ok, tho there's not much on results_in_removal_of in ro_test.obo
!! also, could use genus macromolecular complex disassembly


[Term]
id: GO:0034383 ! low-density lipoprotein particle clearance
intersection_of: GO:0032984 ! macromolecular complex disassembly
intersection_of: OBO_REL:results_in_breakdown_of GO:0034362 ! low-density lipoprotein particle
!!intersection_of: OBO_REL:results_in_removal_of GO:0034362 ! low-density lipoprotein particle
!! same comments as GO:0034382 xp

[Term]
id: GO:0034384 ! high-density lipoprotein particle clearance
intersection_of: GO:0032984 ! macromolecular complex disassembly
intersection_of: OBO_REL:results_in_breakdown_of GO:0034364 ! high-density lipoprotein particle
!!intersection_of: OBO_REL:results_in_removal_of GO:0034364 ! high-density lipoprotein particle
!! same comments as GO:0034382 xp

[Term]
id: GO:0034394 ! protein localization at cell surface
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:unfolds_around GO:0009986 ! cell surface
!! same problem as GO:0033575 xp

[Term]
id: GO:0034447 ! very-low-density lipoprotein particle clearance
intersection_of: GO:0032984 ! macromolecular complex disassembly
intersection_of: OBO_REL:results_in_breakdown_of GO:0034361 ! very-low-density lipoprotein particle
!!intersection_of: OBO_REL:results_in_removal_of GO:0034361 ! very-low-density lipoprotein particle
!! same comments as GO:0034382 xp

[Term]
id: GO:0034460 ! uropod assembly
intersection_of: GO:0022607 ! cellular component assembly
!intersection_of: GO:0032989 ! cellular structure morphogenesis
intersection_of: OBO_REL:results_in_formation_of GO:0001931 ! uropod
! term name changed in BP and here; ok (old xp wasn't exactly wrong, but this is better)

[Term]
id: GO:0034504 ! protein localization in nucleus
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:occurs_in GO:0005634 ! nucleus
!! not sure - GO:0033365 def says "transported to or maintained in", i.e. includes results_in_transport_to; change std def or xp?

[Term]
id: GO:0045175 ! basal protein localization
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:occurs_in GO:0045178 ! basal part of cell
!! not sure - GO:0033365 def says "transported to or maintained in", i.e. includes results_in_transport_to; change std def or xp?

[Term]
id: GO:0045176 ! apical protein localization
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:occurs_in GO:0045177 ! apical part of cell
!! not sure - GO:0033365 def says "transported to or maintained in", i.e. includes results_in_transport_to; change std def or xp?

[Term]
id: GO:0051643 ! ER localization
intersection_of: GO:0051179 ! localization
intersection_of: OBO_REL:results_in_localization_to GO:0005783 ! endoplasmic reticulum
!! might be ok, but I'm not sure; also includes "maintained in"

[Term]
id: GO:0001771 ! formation of immunological synapse
intersection_of: GO:0010926 ! anatomical structure formation
intersection_of: OBO_REL:results_in_formation_of GO:0001772 ! immunological synapse
!! same comment as GO:0001325 xp

[Term]
id: GO:0034058 ! endosomal vesicle fusion
intersection_of: GO:0006906 ! vesicle fusion
intersection_of: OBO_REL:results_in_formation_of GO:0005768 ! endosome
!! not sure - accurate for some instances, but there are also instances where an endosome alreadp exists, and more vesicles fuse with it

!![Term]
!!id: GO:0034221 ! fungal-type cell wall chitin biosynthetic process
!!intersection_of: GO:0006038 ! cell wall chitin biosynthetic process
!!intersection_of: OBO_REL:occurs_in GO:0009277 ! fungal-type cell wall
!! might mean synthesis of chitin destined for fungal cell wall
!! moved to bp-xp-self 2009-05-07

[Term]
id: GO:0034367 ! macromolecular complex remodeling
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_remodeling_of GO:0032991 ! macromolecular complex
!! huh? genus is same as term!
!! should it be cellular component organization or macromolecular complex subunit organization?
!! FIXED --CJM

!![Term]
!!id: GO:0034410 ! cell wall beta-glucan biosynthetic process
!!intersection_of: GO:0051274 ! beta-glucan biosynthetic process
!!intersection_of: OBO_REL:occurs_in GO:0005618 ! cell wall
!! might mean destined for cell wall
!! moved to bp-xp-self 2009-05-07

!![Term]
!!id: GO:0034411 ! cell wall 1,3-beta-glucan biosynthetic process
!!intersection_of: GO:0006075 ! 1,3-beta-glucan biosynthetic process
!!intersection_of: OBO_REL:occurs_in GO:0005618 ! cell wall
!! might mean destined for cell wall
!! moved to bp-xp-self 2009-05-07

[Term]
id: GO:0034454 ! microtubule anchoring at centrosome
intersection_of: GO:0034453 ! microtubule anchoring
intersection_of: OBO_REL:unfolds_around GO:0005813 ! centrosome
!! probably ok

[Term]
id: GO:0034551 ! mitochondrial respiratory chain complex III assembly
!intersection_of: GO:0017062 ! cytochrome bc(1) complex assembly
!intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
intersection_of: GO:0006461 ! protein complex assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005750 ! mitochondrial respiratory chain complex III
! renamed GO:0034551; obol-suggested xp might not be wrong, because the complex probably is assembled in the mito, but I like the new xp def better

[Term]
id: GO:0034553 ! mitochondrial respiratory chain complex II assembly
!intersection_of: GO:0034552 ! respiratory chain complex II assembly
!intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion
intersection_of: GO:0006461 ! protein complex assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005749 ! mitochondrial respiratory chain complex II
! obol-suggested xp might not be wrong, because the complex probably is assembled in the mito, but I like the new xp def better

[Term]
id: GO:0034631 ! microtubule anchoring at spindle pole body
intersection_of: GO:0034453 ! microtubule anchoring
intersection_of: OBO_REL:unfolds_around GO:0005816 ! spindle pole body
!! might be ok

!!! Midori's progress-measuring comment 
!!! stanza above is last one evaluated (move this as needed)

[Term]
id: GO:0006897 ! endocytosis
intersection_of: GO:0016192 ! vesicle-mediated transport
intersection_of: OBO_REL:results_in_transport_from GO:0005576 ! extracellular region
intersection_of: OBO_REL:results_in_transport_within GO:0016023 ! cytoplasmic membrane-bounded vesicle
intersection_of: OBO_REL:results_in_transport_across GO:0005886 ! plasma membrane
! thought it was ok, but now questioning it (see SF 2713459)

[Term]
id: GO:0006909 ! phagocytosis
intersection_of: GO:0006897 ! endocytosis
intersection_of: OBO_REL:has_participant GO:0045335 ! phagocytic vesicle
!! probably ok

[Term]
id: GO:0006810 ! transport
intersection_of: GO:0008150 ! biological_process
intersection_of: OBO_REL:results_in_transport_involving GO:0005623 ! cell
!! probably ok

[Term]
id: GO:0042254 ! ribosome biogenesis
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_formation_of GO:0005840 ! ribosome
!! still some work to do - ought to have a CC biogenesis term

[Term]
id: GO:0042273 ! ribosomal large subunit biogenesis
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_formation_of GO:0015934 ! large ribosomal subunit
!! still some work to do - ought to have a CC biogenesis term

[Term]
id: GO:0042274 ! ribosomal small subunit biogenesis
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_formation_of GO:0015935 ! small ribosomal subunit
!! still some work to do - ought to have a CC biogenesis term

[Term]
id: GO:0043165 ! cell outer membrane assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0009279 ! cell outer membrane
! now ok; GO:0043165 text def describes assembly term, so renamed

[Term]
id: GO:0006342 ! chromatin silencing
intersection_of: GO:0016458 ! gene silencing
intersection_of: regulates GO:0006350 ! transcription
intersection_of: OBO_REL:results_in_formation_of GO:0000792 ! heterochromatin
!! chromatin silencing no longer has path to heterochromatin formation; Val says silencing isn't always by heterochromatin formation, so probably shouldn't use this xp def

[Term]
id: GO:0009833 ! primary cell wall biogenesis
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_formation_of GO:0009530 ! primary cell wall
!! rename assembly?

[Term]
id: GO:0009834 ! secondary cell wall biogenesis
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_formation_of GO:0009531 ! secondary cell wall
! rename assembly?

[Term]
id: GO:0032581 ! ER-dependent peroxisome biogenesis
intersection_of: GO:0007031 ! peroxisome organization
intersection_of: OBO_REL:dependent_on GO:0005783 ! endoplasmic reticulum
!! check biogenesis vs. organization

[Term]
id: GO:0033628 ! regulation of cell adhesion mediated by integrin
intersection_of: GO:0030155 ! regulation of cell adhesion
intersection_of: OBO_REL:mediated_by GO:0008305 ! integrin complex
!! ask D&T -- it's the adhesion that's mediated by integrins, not necessarily the regulation 

[Term]
id: GO:0033629 ! negative regulation of cell adhesion mediated by integrin
intersection_of: GO:0007162 ! negative regulation of cell adhesion
intersection_of: OBO_REL:mediated_by GO:0008305 ! integrin complex
!! same comment as GO:0033628

[Term]
id: GO:0033630 ! positive regulation of cell adhesion mediated by integrin
intersection_of: GO:0045785 ! positive regulation of cell adhesion
intersection_of: OBO_REL:mediated_by GO:0008305 ! integrin complex
!! same comment as GO:0033628

[Term]
id: GO:0033632 ! regulation of cell-cell adhesion mediated by integrin
intersection_of: GO:0022407 ! regulation of cell-cell adhesion
intersection_of: OBO_REL:mediated_by GO:0008305 ! integrin complex
!! same comment as GO:0033628

[Term]
id: GO:0033633 ! negative regulation of cell-cell adhesion mediated by integrin
intersection_of: GO:0022408 ! negative regulation of cell-cell adhesion
intersection_of: OBO_REL:mediated_by GO:0008305 ! integrin complex
!! same comment as GO:0033628

[Term]
id: GO:0033634 ! positive regulation of cell-cell adhesion mediated by integrin
intersection_of: GO:0022409 ! positive regulation of cell-cell adhesion
intersection_of: OBO_REL:mediated_by GO:0008305 ! integrin complex
!! same comment as GO:0033628

[Term]
id: GO:0045048 ! protein insertion into ER membrane
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:occurs_in GO:0005789 ! endoplasmic reticulum membrane
!! results_in_transport_to GO:0005789 probably better

[Term]
id: GO:0051204 ! protein insertion into mitochondrial membrane
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:occurs_in GO:0031966 ! mitochondrial membrane
!! results_in_transport_to GO:0031966 probably better

!! ****************************************
!! removed status to unvetted on 2008/03/26 !!
!! ****************************************

[Term]
id: GO:0016568 ! chromatin modification
intersection_of: GO:0008152 ! metabolic process
intersection_of: OBO_REL:results_in_change_to GO:0000785 ! chromatin
! not a type of metabolism (i.e. GO:0016568 has no path to metabolic process at present)

!! ****************************************
!! EVERYTHING BELOW HERE : post - 2008/03/26 !!
!! ****************************************

[Term]
id: GO:0001788 ! antibody-dependent cellular cytotoxicity
intersection_of: GO:0008219 ! cell death
intersection_of: OBO_REL:dependent_on GO:0042571 ! immunoglobulin complex, circulating
! CJM: DUBIOUS
! mah: let's ask Alex

[Term]
id: GO:0002378 ! immunoglobulin biosynthetic process
intersection_of: GO:0009058 ! biosynthetic process
intersection_of: OBO_REL:results_in_formation_of GO:0042571 ! immunoglobulin complex, circulating
! CJM: DUBIOUS
! mah: might be better to use OBO_REL:results_in_formation_of GO:0019814 ! immunoglobulin complex; probably another one for Alex

[Term]
id: GO:0019068 ! virion assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0019012 ! virion
! CJM: I recall thinking this was dubious from a previous round, cant remember why now
! mah: maybe because all the virus-related stuff is maddening?
! Jane, Michelle, et al. are revamping the virus terms, so perhaps wait for that, and have them look at this xp

!![Term]
!!id: GO:0034217 ! ascospore wall chitin biosynthetic process
!!intersection_of: GO:0006031 ! chitin biosynthetic process
!!intersection_of: OBO_REL:results_in_formation_of GO:0005619 ! ascospore wall
! DUBIOUS
! mah: term is likely to mean synthesis of chitin destined for the ascospore wall
!! moved to bp-xp-self 2009-05-07

!![Term]
!!id: GO:0034412 ! ascospore wall beta-glucan biosynthetic process
!!intersection_of: GO:0051274 ! beta-glucan biosynthetic process
!!intersection_of: OBO_REL:results_in_formation_of GO:0005619 ! ascospore wall
! DUBIOUS
! mah: term is likely to mean synthesis of beta-glucan destined for the ascospore wall
!! moved to bp-xp-self 2009-05-07

!![Term]
!!id: GO:0034413 ! ascospore wall 1,3-beta-glucan biosynthetic process
!!intersection_of: GO:0006075 ! 1,3-beta-glucan biosynthetic process
!!intersection_of: OBO_REL:results_in_formation_of GO:0005619 ! ascospore wall
! DUBIOUS
! mah: term is likely to mean synthesis of 1,3-beta-glucan destined for the ascospore wall
!! moved to bp-xp-self 2009-05-07

[Term]
id: GO:0035316 ! non-sensory hair organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:results_in_organization_of GO:0070451 ! cell hair
! CHECK. Seems ok?
! mah: I can't find anything obviously wrong with it

[Term]
id: GO:0044038 ! cell wall biosynthetic process
intersection_of: GO:0009058 ! biosynthetic process
intersection_of: OBO_REL:results_in_formation_of GO:0005618 ! cell wall
! CHECK. Seems odd to include the biosynthesis ones here
! mah: I think GO:0044038 and similar are going to be renamed to '[CC] macromolecule biosynthesis'; they refer to synthesis of the proteins, carbohydrates, or other molecules that get together to form the CC

[Term]
id: GO:0048305 ! immunoglobulin secretion
intersection_of: GO:0046903 ! secretion
intersection_of: OBO_REL:results_in_transport_of GO:0042571 ! immunoglobulin complex, circulating
! SEE ABOVE
! mah: looks ok to me, but ask Alex

[Term]
id: GO:0060401 ! cytosolic calcium ion transport
intersection_of: GO:0006816 ! calcium ion transport
intersection_of: OBO_REL:occurs_in GO:0005829 ! cytosol
! mah: this is one of those 'into, out of or within' defs

[Term]
id: GO:0070072 ! vacuolar proton-transporting V-type ATPase complex assembly
intersection_of: GO:0070070 ! proton-transporting V-type ATPase complex assembly
! intersection_of: OBO_REL:occurs_in GO:0005773 ! vacuole
! mah: I would use OBO_REL:results_in_formation_of GO:0016471 ! vacuolar proton-transporting V-type ATPase complex

[Term]
id: GO:0070502 ! capsule poly-gamma-glutamate biosynthetic process
intersection_of: GO:0070501 ! poly-gamma-glutamate biosynthetic process
intersection_of: OBO_REL:results_in_formation_of GO:0042603 ! capsule
! mah: term means synthesis of poly-gamma-glutamate destined for the capsule

!! we have to use cardinality for this one; otherwise
!! we end up with things wrongly classified under this
[Term]
id: GO:0006944 ! membrane fusion
intersection_of: GO:0009987 ! cellular process
intersection_of: OBO_REL:results_in_fusion_of GO:0016020 {cardinality="2"} ! membrane


[Term]
id: GO:0010151 ! chloroplast elongation
intersection_of: GO:0008150 ! biological_process
intersection_of: results_in_increased_length_of GO:0009507 ! chloroplast

[Term]
id: GO:0051231 ! spindle elongation
intersection_of: GO:0008150 ! biological_process
intersection_of: results_in_increased_length_of GO:0005819 ! spindle

! in GO this is is_a ATP biosynth, not part_of 
! see also: http://www.reactome.org/cgi-bin/eventbrowser?DB=gk_current&FOCUS_SPECIES=Homo%20sapiens&ID=164834&
[Term]
id: GO:0042776 ! mitochondrial ATP synthesis coupled proton transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_from GO:0005758 ! mitochondrial intermembrane space
intersection_of: OBO_REL:results_in_transport_to GO:0005759 ! mitochondrial matrix
intersection_of: part_of GO:0006754 ! ATP biosynthetic process

!! obol, 2010-01-17

[Term]
id: GO:0001677 ! formation of translation initiation ternary complex
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0044207 ! translation initiation ternary complex

[Term]
id: GO:0001731 ! formation of translation preinitiation complex
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0070993 ! translation preinitiation complex

[Term]
id: GO:0001732 ! formation of translation initiation complex
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0070992 ! translation initiation complex

[Term]
id: GO:0001905 ! activation of membrane attack complex
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005579 ! membrane attack complex

[Term]
id: GO:0003399 ! cytoneme morphogenesis
intersection_of: GO:0009653 ! anatomical structure morphogenesis
intersection_of: OBO_REL:results_in_maturation_of GO:0035230 ! cytoneme

[Term]
id: GO:0006325 ! chromatin organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0000785 ! chromatin

[Term]
id: GO:0007183 ! SMAD protein complex assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0071141 ! SMAD protein complex

[Term]
id: GO:0010970 ! microtubule-based transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:has_participant GO:0005874 ! microtubule

[Term]
id: GO:0015869 ! protein-DNA complex transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_of GO:0032993 ! protein-DNA complex

[Term]
id: GO:0016049 ! cell growth
intersection_of: GO:0040007 ! growth
intersection_of: OBO_REL:results_in_increase_in_mass_of GO:0005623 ! cell

[Term]
id: GO:0031102 ! neuron projection regeneration
intersection_of: GO:0031099 ! regeneration
intersection_of: OBO_REL:results_in_maturation_of GO:0043005 ! neuron projection

[Term]
id: GO:0031175 ! neuron projection development
intersection_of: GO:0032502 ! developmental process
intersection_of: OBO_REL:results_in_complete_development_of GO:0043005 ! neuron projection

[Term]
id: GO:0016358 ! dendrite development
intersection_of: GO:0032502 ! developmental process
intersection_of: OBO_REL:results_in_complete_development_of GO:0030425 ! dendrite

[Term]
id: GO:0032118 ! horsetail-astral microtubule organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0032117 ! horsetail-astral microtubule array

[Term]
id: GO:0034080 ! CenH3-containing nucleosome assembly at centromere
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0043505 ! centromere-specific nucleosome

[Term]
id: GO:0034975 ! protein folding in endoplasmic reticulum
intersection_of: GO:0006457 ! protein folding
intersection_of: OBO_REL:occurs_in GO:0005783 ! endoplasmic reticulum

[Term]
id: GO:0042793 ! transcription from plastid promoter
intersection_of: GO:0006350 ! transcription
intersection_of: OBO_REL:results_in_formation_of GO:0009536 ! plastid

[Term]
id: GO:0043683 ! type IV pilus biogenesis
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0044096 ! type IV pilus

[Term]
id: GO:0043697 ! cell dedifferentiation
intersection_of: GO:0043696 ! dedifferentiation
intersection_of: OBO_REL:results_in_maturation_of GO:0005623 ! cell

[Term]
id: GO:0043711 ! pilus organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0009289 ! pilus

[Term]
id: GO:0044234 ! cell wall organization in other organism
intersection_of: GO:0071555 ! cell wall organization
intersection_of: OBO_REL:occurs_in GO:0044215 ! other organism

[Term]
id: GO:0044235 ! cellular component organization in other organism
intersection_of: GO:0016043 ! cellular component organization
intersection_of: OBO_REL:occurs_in GO:0044215 ! other organism

[Term]
id: GO:0044277 ! cell wall disassembly
intersection_of: GO:0022411 ! cellular component disassembly
intersection_of: OBO_REL:results_in_breakdown_of GO:0005618 ! cell wall

[Term]
id: GO:0046801 ! intracellular transport of viral capsid in host cell
intersection_of: GO:0019060 ! intracellular transport of viral proteins in host cell
intersection_of: OBO_REL:results_in_transport_of GO:0019028 ! viral capsid

!! Obol 2010-02-15


[Term]
id: GO:0002159 ! desmosome assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0030057 ! desmosome

[Term]
id: GO:0048208 ! COPII vesicle coating
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0030127 ! COPII vesicle coat

[Term]
id: GO:0048812 ! neuron projection morphogenesis
intersection_of: GO:0009653 ! anatomical structure morphogenesis
intersection_of: OBO_REL:results_in_maturation_of GO:0043005 ! neuron projection

[Term]
id: GO:0060471 ! cortical granule exocytosis
intersection_of: GO:0006887 ! exocytosis
intersection_of: OBO_REL:results_in_transport_of GO:0060473 ! cortical granule

[Term]
id: GO:0060478 ! acrosomal vesicle exocytosis
intersection_of: GO:0006887 ! exocytosis
intersection_of: OBO_REL:results_in_transport_of GO:0001669 ! acrosomal vesicle

[Term]
id: GO:0060881 ! basal lamina disassembly
intersection_of: GO:0022411 ! cellular component disassembly
intersection_of: OBO_REL:results_in_breakdown_of GO:0005605 ! basal lamina

[Term]
id: GO:0060988 ! lipid tube assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0060987 ! lipid tube

[Term]
id: GO:0060996 ! dendritic spine development
intersection_of: GO:0032502 ! developmental process
intersection_of: OBO_REL:results_in_complete_development_of GO:0043197 ! dendritic spine

[Term]
id: GO:0060997 ! dendritic spine morphogenesis
intersection_of: GO:0009653 ! anatomical structure morphogenesis
intersection_of: OBO_REL:results_in_maturation_of GO:0043197 ! dendritic spine

[Term]
id: GO:0061024 ! membrane organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0016020 ! membrane

[Term]
id: GO:0061025 ! membrane fusion
intersection_of: GO:0009987 ! cellular process
intersection_of: OBO_REL:results_in_fusion_of GO:0016020 ! membrane

[Term]
id: GO:0070584 ! mitochondrion morphogenesis
intersection_of: GO:0009653 ! anatomical structure morphogenesis
intersection_of: OBO_REL:results_in_maturation_of GO:0005739 ! mitochondrion

[Term]
id: GO:0070585 ! protein localization in mitochondrion
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:results_in_localization_to GO:0005739 ! mitochondrion

[Term]
id: GO:0070589 ! cellular component macromolecule biosynthetic process
intersection_of: GO:0009059 ! macromolecule biosynthetic process
intersection_of: OBO_REL:results_in_formation_of GO:0005575 ! cellular_component

[Term]
id: GO:0070625 ! zymogen granule exocytosis
intersection_of: GO:0006887 ! exocytosis
intersection_of: OBO_REL:results_in_transport_of GO:0042588 ! zymogen granule

[Term]
id: GO:0070631 ! spindle pole body localization
intersection_of: GO:0051179 ! localization
intersection_of: OBO_REL:results_in_localization_of GO:0005816 ! spindle pole body

[Term]
id: GO:0070682 ! proteasome regulatory particle assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005838 ! proteasome regulatory particle

[Term]
id: GO:0070726 ! cell wall assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005618 ! cell wall

[Term]
id: GO:0070817 ! P-TEFb-cap methyltransferase complex localization
intersection_of: GO:0051179 ! localization
intersection_of: OBO_REL:results_in_localization_of GO:0070693 ! P-TEFb-cap methyltransferase complex

[Term]
id: GO:0070828 ! heterochromatin organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0000792 ! heterochromatin

[Term]
id: GO:0070830 ! tight junction assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005923 ! tight junction

[Term]
id: GO:0070831 ! basement membrane assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005604 ! basement membrane

[Term]
id: GO:0070836 ! caveola assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005901 ! caveola

[Term]
id: GO:0070841 ! inclusion body assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0016234 ! inclusion body

[Term]
id: GO:0070842 ! aggresome assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0016235 ! aggresome

[Term]
id: GO:0070880 ! fungal-type cell wall beta-glucan biosynthetic process
intersection_of: GO:0051274 ! beta-glucan biosynthetic process
intersection_of: OBO_REL:results_in_formation_of GO:0009277 ! fungal-type cell wall

[Term]
id: GO:0070889 ! platelet alpha granule organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0031091 ! platelet alpha granule

[Term]
id: GO:0070925 ! organelle assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0043226 ! organelle

[Term]
id: GO:0070941 ! eisosome assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0032126 ! eisosome

[Term]
id: GO:0070972 ! protein localization in endoplasmic reticulum
intersection_of: GO:0008104 ! protein localization
intersection_of: OBO_REL:results_in_localization_to GO:0005783 ! endoplasmic reticulum

[Term]
id: GO:0070978 ! voltage-gated calcium channel complex assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005891 ! voltage-gated calcium channel complex

[Term]
id: GO:0071026 ! cytoplasmic RNA surveillance
intersection_of: GO:0071025 ! RNA surveillance
intersection_of: OBO_REL:occurs_in GO:0005737 ! cytoplasm

[Term]
id: GO:0071027 ! nuclear RNA surveillance
intersection_of: GO:0071025 ! RNA surveillance
intersection_of: OBO_REL:occurs_in GO:0005634 ! nucleus

[Term]
id: GO:0071042 ! nuclear polyadenylation-dependent mRNA catabolic process
intersection_of: GO:0071047 ! polyadenylation-dependent mRNA catabolic process
intersection_of: OBO_REL:occurs_in GO:0005634 ! nucleus

[Term]
id: GO:0071045 ! nuclear histone mRNA catabolic process
intersection_of: GO:0071044 ! histone mRNA catabolic process
intersection_of: OBO_REL:occurs_in GO:0005634 ! nucleus

[Term]
id: GO:0071046 ! nuclear polyadenylation-dependent ncRNA catabolic process
intersection_of: GO:0043634 ! polyadenylation-dependent ncRNA catabolic process
intersection_of: OBO_REL:occurs_in GO:0005634 ! nucleus

[Term]
id: GO:0071163 ! DNA replication preinitiation complex assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0031261 ! DNA replication preinitiation complex

[Term]
id: GO:0071165 ! GINS complex assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0000811 ! GINS complex

[Term]
id: GO:0071166 ! ribonucleoprotein complex localization
intersection_of: GO:0051179 ! localization
intersection_of: OBO_REL:results_in_localization_of GO:0030529 ! ribonucleoprotein complex

[Term]
id: GO:0071167 ! ribonucleoprotein complex import into nucleus
intersection_of: GO:0051170 ! nuclear import
intersection_of: OBO_REL:results_in_transport_of GO:0030529 ! ribonucleoprotein complex

[Term]
id: GO:0071255 ! CVT vesicle assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0033107 ! CVT vesicle

[Term]
id: GO:0071426 ! ribonucleoprotein complex export from nucleus
intersection_of: GO:0051168 ! nuclear export
intersection_of: OBO_REL:results_in_transport_of GO:0030529 ! ribonucleoprotein complex

[Term]
id: GO:0071555 ! cell wall organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0005618 ! cell wall

[Term]
id: GO:0071562 ! nucleus-vacuole junction assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0071561 ! nucleus-vacuole junction

[Term]
id: GO:0071573 ! telosome assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0070187 ! telosome

[Term]
id: GO:0071668 ! plant-type cell wall assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0009505 ! plant-type cell wall

[Term]
id: GO:0080006 ! internode patterning
intersection_of: GO:0007389 ! pattern specification process
intersection_of: OBO_REL:results_in_specification_of GO:0033269 ! internode region of axon

[Term]
id: GO:0080119 ! ER body organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0010168 ! ER body

[Term]
id: GO:0080129 ! proteasome core complex assembly
intersection_of: GO:0022607 ! cellular component assembly
intersection_of: OBO_REL:results_in_formation_of GO:0005839 ! proteasome core complex

[Term]
id: GO:0090002 ! establishment of protein localization in plasma membrane
intersection_of: GO:0045184 ! establishment of protein localization
intersection_of: OBO_REL:occurs_in GO:0005886 ! plasma membrane

[Term]
id: GO:0090120 ! lysosome to ER cholesterol transport
intersection_of: GO:0030301 ! cholesterol transport
intersection_of: OBO_REL:results_in_transport_from GO:0005764 ! lysosome
intersection_of: OBO_REL:results_in_transport_to GO:0005783 ! endoplasmic reticulum

[Term]
id: GO:0090139 ! mitochondrial DNA packaging
intersection_of: GO:0006323 ! DNA packaging
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0090142 ! mitochondrial chromosome segregation
intersection_of: GO:0007059 ! chromosome segregation
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0090143 ! nucleoid organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0009295 ! nucleoid

[Term]
id: GO:0090144 ! mitochondrial nucleoid organization
intersection_of: GO:0090143 ! nucleoid organization
intersection_of: OBO_REL:occurs_in GO:0005739 ! mitochondrion

[Term]
id: GO:0090148 ! membrane fission
intersection_of: GO:0009987 ! cellular process
intersection_of: OBO_REL:results_in_division_of GO:0016020 ! membrane

[Term]
id: GO:0090150 ! establishment of protein localization in membrane
intersection_of: GO:0045184 ! establishment of protein localization
intersection_of: OBO_REL:occurs_in GO:0016020 ! membrane

[Term]
id: GO:0090151 ! establishment of protein localization in mitochondrial membrane
intersection_of: GO:0045184 ! establishment of protein localization
intersection_of: OBO_REL:occurs_in GO:0031966 ! mitochondrial membrane

[Term]
id: GO:0090158 ! endoplasmic reticulum membrane organization
intersection_of: GO:0016043 ! cellular component organization
intersection_of: results_in_organization_of GO:0005789 ! endoplasmic reticulum membrane

[Term]
id: GO:0090160 ! Golgi to lysosome transport
intersection_of: GO:0006810 ! transport
intersection_of: OBO_REL:results_in_transport_from GO:0005794 ! Golgi apparatus
intersection_of: OBO_REL:results_in_transport_to GO:0005764 ! lysosome

[Term]
id: GO:0090166 ! Golgi disassembly
intersection_of: GO:0022411 ! cellular component disassembly
intersection_of: OBO_REL:results_in_breakdown_of GO:0005794 ! Golgi apparatus

[Term]
id: GO:0090174 ! organelle membrane fusion
intersection_of: GO:0009987 ! cellular process
intersection_of: OBO_REL:results_in_fusion_of GO:0031090 ! organelle membrane