! No parse for: GO:0000015 phosphopyruvate hydratase complex ! No parse for: GO:0000108 repairosome ! No parse for: GO:0000109 nucleotide-excision repair complex ! No parse for: GO:0000110 nucleotide-excision repair factor 1 complex ! No parse for: GO:0000111 nucleotide-excision repair factor 2 complex ! No parse for: GO:0000112 nucleotide-excision repair factor 3 complex ! No parse for: GO:0000113 nucleotide-excision repair factor 4 complex ! No parse for: GO:0000118 histone deacetylase complex ! No parse for: GO:0000119 mediator complex ! No parse for: GO:0000120 RNA polymerase I transcription factor complex ! No parse for: GO:0000123 histone acetyltransferase complex ! No parse for: GO:0000124 SAGA complex ! No parse for: GO:0000125 PCAF complex ! No parse for: GO:0000126 transcription factor TFIIIB complex ! No parse for: GO:0000127 transcription factor TFIIIC complex ! No parse for: GO:0000131 incipient cellular bud site ! No parse for: GO:0000133 polarisome ! No parse for: GO:0000136 alpha-1,6-mannosyltransferase complex ! No parse for: GO:0000137 Golgi cis cisterna ! No parse for: GO:0000138 Golgi trans cisterna ! parse: GO:0000139 using "Golgi membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005794]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding any of the compartments of the Golgi apparatus." ! PROPOSED: membrane that OBO_REL:part_of Golgi apparatus [cdef(GO:0016020, [OBO_REL:part_of=GO:0005794])] [Term] id: GO:0000139 ! Golgi membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005794 ! Golgi apparatus synonym: "Golgi apparatus membrane" EXACT [OBOL:automatic] synonym: "Golgi complex membrane" EXACT [OBOL:automatic] ! parse: GO:0000142 using "cellular bud neck contractile ring" => cdef(GO:0005826, [OBO_REL:part_of=GO:0005935]) [-2] ! no existing xp def ! def: "A contractile ring, i.e. a cytoskeletal structure composed of actin filaments and myosin, that forms beneath the plasma membrane at the mother-bud neck in mitotic cells that divide by budding in preparation for completing cytokinesis." ! PROPOSED: contractile ring that OBO_REL:part_of cellular bud neck [cdef(GO:0005826, [OBO_REL:part_of=GO:0005935])] [Term] id: GO:0000142 ! cellular bud neck contractile ring intersection_of: GO:0005826 ! contractile ring intersection_of: OBO_REL:part_of GO:0005935 ! cellular bud neck synonym: "cellular bud neck CAR" EXACT [OBOL:automatic] synonym: "cellular bud neck contractile actomyosin ring" EXACT [OBOL:automatic] ! parse: GO:0000144 using "cellular bud neck septin ring" => cdef(GO:0005940, [OBO_REL:part_of=GO:0005935]) [-2] ! no existing xp def ! def: "A ring-shaped structure that forms at the site of cytokinesis; composed of members of the conserved family of filament forming proteins called septins as well as septin-associated proteins. In S. cerevisiae, this structure forms at the time of bud emergence and the septins show a high rate of exchange." ! PROPOSED: septin ring that OBO_REL:part_of cellular bud neck [cdef(GO:0005940, [OBO_REL:part_of=GO:0005935])] [Term] id: GO:0000144 ! cellular bud neck septin ring intersection_of: GO:0005940 ! septin ring intersection_of: OBO_REL:part_of GO:0005935 ! cellular bud neck ! No parse for: GO:0000145 exocyst ! No parse for: GO:0000148 1,3-beta-glucan synthase complex ! No parse for: GO:0000151 ubiquitin ligase complex ! No parse for: GO:0000152 nuclear ubiquitin ligase complex ! No parse for: GO:0000153 cytoplasmic ubiquitin ligase complex ! No parse for: GO:0000159 protein phosphatase type 2A complex ! No parse for: GO:0000164 protein phosphatase type 1 complex ! No parse for: GO:0000172 ribonuclease MRP complex ! No parse for: GO:0000176 nuclear exosome (RNase complex) ! No parse for: GO:0000177 cytoplasmic exosome (RNase complex) ! No parse for: GO:0000178 exosome (RNase complex) ! No parse for: GO:0000214 tRNA-intron endonuclease complex ! No parse for: GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain ! No parse for: GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain ! parse: GO:0000222 using "plasma membrane proton-transporting V-type ATPase, V0 domain" => cdef(GO:0033179, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "The V0 domain of a proton-transporting V-type ATPase found in the plasma membrane." ! PROPOSED: proton-transporting V-type ATPase, V0 domain that OBO_REL:part_of plasma membrane [cdef(GO:0033179, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0000222 ! plasma membrane proton-transporting V-type ATPase, V0 domain intersection_of: GO:0033179 ! proton-transporting V-type ATPase, V0 domain intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane proton-transporting V-type ATPase, V 0 domain" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting V-type ATPase, V 0 domain" EXACT [OBOL:automatic] synonym: "plasma membrane proton-transporting V-type ATPase, V 0 domain" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting V-type ATPase, V 0 domain" EXACT [OBOL:automatic] ! parse: GO:0000223 using "plasma membrane proton-transporting V-type ATPase, V1 domain" => cdef(GO:0033180, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "The V1 domain of a proton-transporting V-type ATPase found in the plasma membrane." ! PROPOSED: proton-transporting V-type ATPase, V1 domain that OBO_REL:part_of plasma membrane [cdef(GO:0033180, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0000223 ! plasma membrane proton-transporting V-type ATPase, V1 domain intersection_of: GO:0033180 ! proton-transporting V-type ATPase, V1 domain intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane proton-transporting V-type ATPase, V 1 domain" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting V-type ATPase, V 1 domain" EXACT [OBOL:automatic] synonym: "plasma membrane proton-transporting V-type ATPase, V 1 domain" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting V-type ATPase, V 1 domain" EXACT [OBOL:automatic] ! No parse for: GO:0000228 nuclear chromosome ! No parse for: GO:0000229 cytoplasmic chromosome ! No parse for: GO:0000235 astral microtubule ! No parse for: GO:0000242 pericentriolar material ! No parse for: GO:0000243 commitment complex ! No parse for: GO:0000262 mitochondrial chromosome ! No parse for: GO:0000267 cell fraction ! No parse for: GO:0000274 mitochondrial proton-transporting ATP synthase, stator stalk ! No parse for: GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) ! No parse for: GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) ! No parse for: GO:0000299 integral to membrane of membrane fraction ! No parse for: GO:0000300 peripheral to membrane of membrane fraction ! No parse for: GO:0000306 extrinsic to vacuolar membrane ! No parse for: GO:0000307 cyclin-dependent protein kinase holoenzyme complex ! No parse for: GO:0000308 cytoplasmic cyclin-dependent protein kinase holoenzyme complex ! parse: GO:0000311 using "plastid large ribosomal subunit" => cdef(GO:0015934, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "The larger of the two subunits of a plastid ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site)." ! PROPOSED: large ribosomal subunit that OBO_REL:part_of plastid [cdef(GO:0015934, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0000311 ! plastid large ribosomal subunit intersection_of: GO:0015934 ! large ribosomal subunit intersection_of: OBO_REL:part_of GO:0009536 ! plastid synonym: "plastid ribosomal large subunit" EXACT [OBOL:automatic] ! parse: GO:0000312 using "plastid small ribosomal subunit" => cdef(GO:0015935, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "The smaller of the two subunits of a plastid ribosome." ! PROPOSED: small ribosomal subunit that OBO_REL:part_of plastid [cdef(GO:0015935, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0000312 ! plastid small ribosomal subunit intersection_of: GO:0015935 ! small ribosomal subunit intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0000313 organellar ribosome ! No parse for: GO:0000314 organellar small ribosomal subunit ! No parse for: GO:0000315 organellar large ribosomal subunit ! No parse for: GO:0000322 storage vacuole ! No parse for: GO:0000323 lytic vacuole ! No parse for: GO:0000324 vacuole, cell cycle-correlated morphology ! No parse for: GO:0000325 vacuole, cell cycle independent morphology ! No parse for: GO:0000326 protein storage vacuole ! No parse for: GO:0000327 lytic vacuole within protein storage vacuole ! No parse for: GO:0000328 lumen of vacuole with cell cycle-correlated morphology ! No parse for: GO:0000329 membrane of vacuole with cell cycle-correlated morphology ! No parse for: GO:0000330 lumen of vacuole with cell cycle-independent morphology ! No parse for: GO:0000331 contractile vacuole ! No parse for: GO:0000333 telomerase catalytic core complex ! No parse for: GO:0000343 plastid-encoded plastid RNA polymerase complex A ! No parse for: GO:0000344 plastid-encoded plastid RNA polymerase complex B ! No parse for: GO:0000345 cytosolic DNA-directed RNA polymerase complex ! No parse for: GO:0000346 transcription export complex ! No parse for: GO:0000347 THO complex ! No parse for: GO:0000399 cellular bud neck septin structure ! No parse for: GO:0000407 pre-autophagosomal structure ! No parse for: GO:0000408 EKC/KEOPS protein complex ! No parse for: GO:0000417 HIR complex ! No parse for: GO:0000418 DNA-directed RNA polymerase IV complex ! No parse for: GO:0000419 DNA-directed RNA polymerase IVb complex ! No parse for: GO:0000420 DNA-directed RNA polymerase IVa complex ! parse: GO:0000421 using "autophagic vacuole membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005776]) [-2] ! parse: GO:0000421 using "autophagosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005776]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding an autophagic vacuole, a double-membrane bound vesicle in which endogenous cellular material is sequestered." ! PROPOSED: membrane that OBO_REL:part_of autophagic vacuole [cdef(GO:0016020, [OBO_REL:part_of=GO:0005776])] [Term] id: GO:0000421 ! autophagic vacuole membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005776 ! autophagic vacuole ! No parse for: GO:0000427 plastid-encoded plastid RNA polymerase complex ! No parse for: GO:0000428 DNA-directed RNA polymerase complex ! No parse for: GO:0000438 core TFIIH complex portion of holo TFIIH complex ! No parse for: GO:0000439 core TFIIH complex ! No parse for: GO:0000440 core TFIIH complex portion of NEF3 complex ! No parse for: GO:0000441 SSL2-core TFIIH complex ! No parse for: GO:0000442 SSL2-core TFIIH complex portion of NEF3 complex ! No parse for: GO:0000443 SSL2-core TFIIH complex portion of holo TFIIH complex ! No parse for: GO:0000444 MIS12/MIND type complex ! No parse for: GO:0000445 THO complex part of transcription export complex ! No parse for: GO:0000446 nucleoplasmic THO complex ! No parse for: GO:0000500 RNA polymerase I upstream activating factor complex ! No parse for: GO:0000502 proteasome complex (sensu Eukaryota) ! No parse for: GO:0000503 proteasome core complex (sensu Bacteria) ! No parse for: GO:0000504 proteasome regulatory particle (sensu Bacteria) ! No parse for: GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex ! No parse for: GO:0000508 Rpd3L complex ! No parse for: GO:0000509 Rpd3S complex ! No parse for: GO:0000775 chromosome, pericentric region ! No parse for: GO:0000776 kinetochore ! parse: GO:0000777 using "condensed chromosome kinetochore" => cdef(GO:0000776, [OBO_REL:part_of=GO:0000793]) [-2] ! no existing xp def ! def: "A multisubunit complex that is located at the pericentric region of a condensed chromosome and provides an attachment point for the spindle microtubules." ! PROPOSED: kinetochore that OBO_REL:part_of condensed chromosome [cdef(GO:0000776, [OBO_REL:part_of=GO:0000793])] [Term] id: GO:0000777 ! condensed chromosome kinetochore intersection_of: GO:0000776 ! kinetochore intersection_of: OBO_REL:part_of GO:0000793 ! condensed chromosome ! parse: GO:0000778 using "condensed nuclear chromosome kinetochore" => cdef(GO:0000776, [OBO_REL:part_of=GO:0000794]) [-2] ! no existing xp def ! def: "A multisubunit complex that is located at the pericentric region of a condensed chromosome in the nucleus and provides an attachment point for the spindle microtubules." ! PROPOSED: kinetochore that OBO_REL:part_of condensed nuclear chromosome [cdef(GO:0000776, [OBO_REL:part_of=GO:0000794])] [Term] id: GO:0000778 ! condensed nuclear chromosome kinetochore intersection_of: GO:0000776 ! kinetochore intersection_of: OBO_REL:part_of GO:0000794 ! condensed nuclear chromosome ! No parse for: GO:0000779 condensed chromosome, pericentric region ! No parse for: GO:0000780 condensed nuclear chromosome, pericentric region ! No parse for: GO:0000781 chromosome, telomeric region ! No parse for: GO:0000782 telomere cap complex ! No parse for: GO:0000783 nuclear telomere cap complex ! No parse for: GO:0000784 nuclear chromosome, telomeric region ! No parse for: GO:0000785 chromatin ! No parse for: GO:0000786 nucleosome ! No parse for: GO:0000787 cytoplasmic nucleosome ! No parse for: GO:0000788 nuclear nucleosome ! No parse for: GO:0000789 cytoplasmic chromatin ! No parse for: GO:0000790 nuclear chromatin ! No parse for: GO:0000791 euchromatin ! No parse for: GO:0000792 heterochromatin ! No parse for: GO:0000793 condensed chromosome ! No parse for: GO:0000794 condensed nuclear chromosome ! No parse for: GO:0000795 synaptonemal complex ! No parse for: GO:0000796 condensin complex ! No parse for: GO:0000797 condensin core heterodimer ! No parse for: GO:0000798 nuclear cohesin complex ! No parse for: GO:0000799 nuclear condensin complex ! No parse for: GO:0000800 lateral element ! No parse for: GO:0000801 central element ! No parse for: GO:0000802 transverse filament ! No parse for: GO:0000803 sex chromosome ! No parse for: GO:0000804 W chromosome ! No parse for: GO:0000805 X chromosome ! No parse for: GO:0000806 Y chromosome ! No parse for: GO:0000807 Z chromosome ! No parse for: GO:0000808 origin recognition complex ! No parse for: GO:0000809 cytoplasmic origin of replication recognition complex ! No parse for: GO:0000811 GINS complex ! No parse for: GO:0000812 SWR1 complex ! No parse for: GO:0000813 ESCRT I complex ! No parse for: GO:0000814 ESCRT II complex ! No parse for: GO:0000815 ESCRT III complex ! No parse for: GO:0000817 COMA complex ! No parse for: GO:0000818 MIND complex ! No parse for: GO:0000922 spindle pole ! No parse for: GO:0000923 equatorial microtubule organizing center ! No parse for: GO:0000924 gamma-tubulin ring complex, centrosomal ! No parse for: GO:0000927 gamma-tubulin small complex, centrosomal ! No parse for: GO:0000928 gamma-tubulin small complex, spindle pole body ! No parse for: GO:0000930 gamma-tubulin complex ! No parse for: GO:0000931 gamma-tubulin large complex ! No parse for: GO:0000932 cytoplasmic mRNA processing body ! No parse for: GO:0000933 adventitious septum ! No parse for: GO:0000934 porous cell septum ! No parse for: GO:0000935 barrier septum ! No parse for: GO:0000936 primary cell septum ! No parse for: GO:0000937 dolipore septum ! No parse for: GO:0000938 GARP complex ! No parse for: GO:0000939 inner kinetochore of condensed chromosome ! No parse for: GO:0000940 outer kinetochore of condensed chromosome ! No parse for: GO:0000941 inner kinetochore of condensed nuclear chromosome ! No parse for: GO:0000942 outer kinetochore of condensed nuclear chromosome ! No parse for: GO:0000943 retrotransposon nucleocapsid ! No parse for: GO:0001400 mating projection base ! No parse for: GO:0001401 mitochondrial sorting and assembly machinery complex ! No parse for: GO:0001405 presequence translocase-associated import motor ! No parse for: GO:0001411 hyphal tip ! No parse for: GO:0001518 voltage-gated sodium channel complex ! No parse for: GO:0001520 outer dense fiber ! No parse for: GO:0001527 microfibril ! No parse for: GO:0001533 cornified envelope ! No parse for: GO:0001534 radial spoke ! No parse for: GO:0001535 radial spokehead ! No parse for: GO:0001536 radial spoke stalk ! No parse for: GO:0001650 fibrillar center ! No parse for: GO:0001651 dense fibrillar component ! No parse for: GO:0001652 granular component ! No parse for: GO:0001669 acrosome ! No parse for: GO:0001673 male germ cell nucleus ! No parse for: GO:0001674 female germ cell nucleus ! No parse for: GO:0001725 stress fiber ! No parse for: GO:0001726 ruffle ! No parse for: GO:0001739 sex chromatin ! No parse for: GO:0001740 Barr body ! No parse for: GO:0001741 XY body ! No parse for: GO:0001750 photoreceptor outer segment ! No parse for: GO:0001772 immunological synapse ! No parse for: GO:0001891 phagocytic cup ! No parse for: GO:0001917 photoreceptor inner segment ! No parse for: GO:0001931 uropod ! No parse for: GO:0001939 female pronucleus ! No parse for: GO:0001940 male pronucleus ! No parse for: GO:0001950 PME fraction ! No parse for: GO:0002079 inner acrosomal membrane ! No parse for: GO:0002080 acrosomal membrane ! No parse for: GO:0002081 outer acrosomal membrane ! No parse for: GO:0002095 caveolar macromolecular signaling complex ! No parse for: GO:0002096 polkadots ! No parse for: GO:0002102 podosome ! No parse for: GO:0005575 cellular_component ! No parse for: GO:0005576 extracellular region ! No parse for: GO:0005577 fibrinogen complex ! No parse for: GO:0005578 proteinaceous extracellular matrix ! No parse for: GO:0005579 membrane attack complex ! No parse for: GO:0005581 collagen ! No parse for: GO:0005582 collagen type XV ! No parse for: GO:0005583 fibrillar collagen ! No parse for: GO:0005584 collagen type I ! No parse for: GO:0005585 collagen type II ! No parse for: GO:0005586 collagen type III ! No parse for: GO:0005587 collagen type IV ! No parse for: GO:0005588 collagen type V ! No parse for: GO:0005589 collagen type VI ! No parse for: GO:0005590 collagen type VII ! No parse for: GO:0005591 collagen type VIII ! No parse for: GO:0005592 collagen type XI ! No parse for: GO:0005593 FACIT collagen ! No parse for: GO:0005594 collagen type IX ! No parse for: GO:0005595 collagen type XII ! No parse for: GO:0005596 collagen type XIV ! No parse for: GO:0005597 collagen type XVI ! No parse for: GO:0005598 short-chain collagen ! No parse for: GO:0005599 collagen type X ! No parse for: GO:0005600 collagen type XIII ! No parse for: GO:0005601 classical-complement-pathway C3/C5 convertase complex ! No parse for: GO:0005602 complement component C1 complex ! No parse for: GO:0005604 basement membrane ! No parse for: GO:0005605 basal lamina ! No parse for: GO:0005606 laminin-1 complex ! No parse for: GO:0005607 laminin-2 complex ! No parse for: GO:0005608 laminin-3 complex ! No parse for: GO:0005609 laminin-4 complex ! No parse for: GO:0005610 laminin-5 complex ! No parse for: GO:0005611 laminin-6 complex ! No parse for: GO:0005612 laminin-7 complex ! No parse for: GO:0005614 interstitial matrix ! No parse for: GO:0005615 extracellular space ! No parse for: GO:0005616 larval serum protein complex ! No parse for: GO:0005618 cell wall ! No parse for: GO:0005619 spore wall (sensu Fungi) ! No parse for: GO:0005621 cellular bud scar ! No parse for: GO:0005622 intracellular ! No parse for: GO:0005623 cell ! No parse for: GO:0005624 membrane fraction ! No parse for: GO:0005625 soluble fraction ! No parse for: GO:0005626 insoluble fraction ! parse: GO:0005628 using "prospore membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042764]) [-2] ! no existing xp def ! def: "The prospore membrane is a double-membraned structure that extends from the cytoplasmic face of the spindle pole bodies to encompass the spindle pole bodies and the four nuclear lobes that are formed during meiosis. It helps isolate the meiotic nuclei from the cytoplasm during spore formation and serves as a foundation for the formation of the spore walls." ! PROPOSED: membrane that OBO_REL:part_of prospore [cdef(GO:0016020, [OBO_REL:part_of=GO:0042764])] [Term] id: GO:0005628 ! prospore membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042764 ! prospore synonym: "forespore (sensu Fungi) membrane" EXACT [OBOL:automatic] ! No parse for: GO:0005630 dityrosine layer of spore wall ! No parse for: GO:0005631 chitosan layer of spore wall ! No parse for: GO:0005632 inner layer of spore wall ! No parse for: GO:0005633 ascus lipid droplet ! No parse for: GO:0005634 nucleus ! No parse for: GO:0005635 nuclear envelope ! No parse for: GO:0005637 nuclear inner membrane ! No parse for: GO:0005638 lamin filament ! No parse for: GO:0005639 integral to nuclear inner membrane ! No parse for: GO:0005640 nuclear outer membrane ! No parse for: GO:0005641 nuclear envelope lumen ! No parse for: GO:0005642 annulate lamellae ! No parse for: GO:0005643 nuclear pore ! No parse for: GO:0005652 nuclear lamina ! No parse for: GO:0005654 nucleoplasm ! No parse for: GO:0005655 nucleolar ribonuclease P complex ! No parse for: GO:0005656 pre-replicative complex ! No parse for: GO:0005657 replication fork ! No parse for: GO:0005658 alpha DNA polymerase:primase complex ! No parse for: GO:0005662 DNA replication factor A complex ! No parse for: GO:0005663 DNA replication factor C complex ! No parse for: GO:0005664 nuclear origin of replication recognition complex ! No parse for: GO:0005665 DNA-directed RNA polymerase II, core complex ! No parse for: GO:0005666 DNA-directed RNA polymerase III complex ! No parse for: GO:0005667 transcription factor complex ! No parse for: GO:0005668 selectivity factor SL1 complex ! No parse for: GO:0005669 transcription factor TFIID complex ! No parse for: GO:0005671 Ada2/Gcn5/Ada3 transcription activator complex ! No parse for: GO:0005672 transcription factor TFIIA complex ! No parse for: GO:0005673 transcription factor TFIIE complex ! No parse for: GO:0005674 transcription factor TFIIF complex ! No parse for: GO:0005675 holo TFIIH complex ! No parse for: GO:0005677 chromatin silencing complex ! No parse for: GO:0005678 chromatin assembly complex ! No parse for: GO:0005680 anaphase-promoting complex ! No parse for: GO:0005681 spliceosome ! No parse for: GO:0005682 snRNP U5 ! No parse for: GO:0005683 snRNP U7 ! No parse for: GO:0005684 U2-dependent spliceosome ! No parse for: GO:0005685 snRNP U1 ! No parse for: GO:0005686 snRNP U2 ! No parse for: GO:0005687 snRNP U4 ! No parse for: GO:0005688 snRNP U6 ! No parse for: GO:0005689 U12-dependent spliceosome ! No parse for: GO:0005690 snRNP U4atac ! No parse for: GO:0005691 snRNP U6atac ! No parse for: GO:0005692 snRNP U11 ! No parse for: GO:0005693 snRNP U12 ! No parse for: GO:0005694 chromosome ! No parse for: GO:0005697 telomerase holoenzyme complex ! No parse for: GO:0005700 polytene chromosome ! parse: GO:0005701 using "polytene chromosome chromocenter" => cdef(GO:0010369, [OBO_REL:part_of=GO:0005700]) [-2] ! no existing xp def ! def: "A region at which the centric regions of polytene chromosomes are joined together." ! PROPOSED: chromocenter that OBO_REL:part_of polytene chromosome [cdef(GO:0010369, [OBO_REL:part_of=GO:0005700])] [Term] id: GO:0005701 ! polytene chromosome chromocenter intersection_of: GO:0010369 ! chromocenter intersection_of: OBO_REL:part_of GO:0005700 ! polytene chromosome ! No parse for: GO:0005702 polytene chromosome weak point ! No parse for: GO:0005703 polytene chromosome puff ! No parse for: GO:0005704 polytene chromosome band ! No parse for: GO:0005705 polytene chromosome interband ! No parse for: GO:0005706 polytene chromosome ectopic fiber ! No parse for: GO:0005712 chiasma ! No parse for: GO:0005713 recombination nodule ! No parse for: GO:0005714 early recombination nodule ! No parse for: GO:0005715 late recombination nodule ! No parse for: GO:0005719 nuclear euchromatin ! No parse for: GO:0005720 nuclear heterochromatin ! No parse for: GO:0005721 centric heterochromatin ! No parse for: GO:0005722 beta-heterochromatin ! No parse for: GO:0005723 alpha-heterochromatin ! No parse for: GO:0005724 nuclear telomeric heterochromatin ! No parse for: GO:0005725 intercalary heterochromatin ! No parse for: GO:0005726 perichromatin fibrils ! No parse for: GO:0005727 extrachromosomal circular DNA ! No parse for: GO:0005728 extrachromosomal rDNA circle ! No parse for: GO:0005729 2-micrometer circle DNA ! No parse for: GO:0005730 nucleolus ! No parse for: GO:0005731 nucleolus organizer region ! No parse for: GO:0005732 small nucleolar ribonucleoprotein complex ! No parse for: GO:0005736 DNA-directed RNA polymerase I complex ! No parse for: GO:0005737 cytoplasm ! No parse for: GO:0005739 mitochondrion ! No parse for: GO:0005740 mitochondrial envelope ! No parse for: GO:0005741 mitochondrial outer membrane ! No parse for: GO:0005742 mitochondrial outer membrane translocase complex ! No parse for: GO:0005743 mitochondrial inner membrane ! No parse for: GO:0005744 mitochondrial inner membrane presequence translocase complex ! No parse for: GO:0005745 m-AAA complex ! No parse for: GO:0005746 mitochondrial respiratory chain ! No parse for: GO:0005747 mitochondrial respiratory chain complex I ! No parse for: GO:0005749 mitochondrial respiratory chain complex II ! parse: GO:0005750 using "mitochondrial respiratory chain complex III" => cdef(GO:0032842, [OBO_REL:part_of=GO:0005746]) [-2] ! no existing xp def ! def: "A part of the respiratory chain located in the mitochondrion, containing about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1." ! PROPOSED: cytochrome bc(1) complex that OBO_REL:part_of mitochondrial respiratory chain [cdef(GO:0032842, [OBO_REL:part_of=GO:0005746])] [Term] id: GO:0005750 ! mitochondrial respiratory chain complex III intersection_of: GO:0032842 ! cytochrome bc(1) complex intersection_of: OBO_REL:part_of GO:0005746 ! mitochondrial respiratory chain synonym: "mitochondrial electron transport chain complex III" EXACT [OBOL:automatic] synonym: "mitochondrial electron transport chain cytochrome bc (1) complex" EXACT [OBOL:automatic] synonym: "mitochondrial electron transport chain cytochrome bc 1 complex" EXACT [OBOL:automatic] synonym: "mitochondrial respiratory chain cytochrome bc (1) complex" EXACT [OBOL:automatic] synonym: "mitochondrial respiratory chain cytochrome bc 1 complex" EXACT [OBOL:automatic] ! No parse for: GO:0005751 mitochondrial respiratory chain complex IV ! No parse for: GO:0005753 mitochondrial proton-transporting ATP synthase complex ! No parse for: GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core ! No parse for: GO:0005756 mitochondrial proton-transporting ATP synthase, central stalk ! No parse for: GO:0005757 mitochondrial permeability transition pore complex ! No parse for: GO:0005758 mitochondrial intermembrane space ! No parse for: GO:0005759 mitochondrial matrix ! No parse for: GO:0005760 gamma DNA polymerase complex ! No parse for: GO:0005761 mitochondrial ribosome ! No parse for: GO:0005762 mitochondrial large ribosomal subunit ! No parse for: GO:0005763 mitochondrial small ribosomal subunit ! No parse for: GO:0005764 lysosome ! No parse for: GO:0005765 lysosomal membrane ! No parse for: GO:0005766 primary lysosome ! No parse for: GO:0005767 secondary lysosome ! No parse for: GO:0005768 endosome ! No parse for: GO:0005769 early endosome ! No parse for: GO:0005770 late endosome ! No parse for: GO:0005771 multivesicular body ! No parse for: GO:0005773 vacuole ! No parse for: GO:0005774 vacuolar membrane ! No parse for: GO:0005775 vacuolar lumen ! No parse for: GO:0005776 autophagic vacuole ! No parse for: GO:0005777 peroxisome ! No parse for: GO:0005778 peroxisomal membrane ! No parse for: GO:0005779 integral to peroxisomal membrane ! No parse for: GO:0005780 extrinsic to intraperoxisomal membrane ! No parse for: GO:0005782 peroxisomal matrix ! No parse for: GO:0005783 endoplasmic reticulum ! No parse for: GO:0005784 translocon complex ! parse: GO:0005785 using "signal recognition particle receptor complex" => cdef(GO:0043235, [OBO_REL:part_of=GO:0048500]) [-2] ! parse: GO:0005785 using "signal recognition particle receptor complex" => cdef(GO:0043235, [binds_to=anon(signal recognition particle, cell)]) [-28] ! no existing xp def ! def: "A transmembrane heterodimeric protein located in the membrane of the rough endoplasmic reticulum. Both subunits contain GTPase domains with which signal recognition particle interacts. In the presence of GTP and SRP receptor, SRP is released from the ribosome-nascent chain complex." ! PROPOSED: receptor complex that OBO_REL:part_of signal recognition particle [cdef(GO:0043235, [OBO_REL:part_of=GO:0048500])] [Term] id: GO:0005785 ! signal recognition particle receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: OBO_REL:part_of GO:0048500 ! signal recognition particle ! parse: GO:0005786 using "signal sequence receptor complex" => cdef(GO:0043235, [binds_to=anon(signal sequence, cell)]) [-16] ! no existing xp def ! def: "A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA." ! PROPOSED: receptor complex that binds_to anon(signal sequence, cell) [cdef(GO:0043235, [binds_to=anon(signal sequence, cell)])] [Term] id: GO:0005786 ! signal recognition particle, endoplasmic reticulum targeting intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:signal_sequence ! No parse for: GO:0005787 signal peptidase complex ! No parse for: GO:0005788 endoplasmic reticulum lumen ! parse: GO:0005789 using "ER membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005783]) [-2] ! parse: GO:0005789 using "endoplasmic reticulum membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005783]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding the endoplasmic reticulum." ! PROPOSED: membrane that OBO_REL:part_of endoplasmic reticulum [cdef(GO:0016020, [OBO_REL:part_of=GO:0005783])] [Term] id: GO:0005789 ! endoplasmic reticulum membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005783 ! endoplasmic reticulum ! No parse for: GO:0005790 smooth endoplasmic reticulum ! No parse for: GO:0005791 rough endoplasmic reticulum ! No parse for: GO:0005792 microsome ! No parse for: GO:0005793 ER-Golgi intermediate compartment ! No parse for: GO:0005794 Golgi apparatus ! No parse for: GO:0005795 Golgi stack ! No parse for: GO:0005796 Golgi lumen ! No parse for: GO:0005797 Golgi medial cisterna ! No parse for: GO:0005798 Golgi-associated vesicle ! No parse for: GO:0005801 cis-Golgi network ! No parse for: GO:0005802 trans-Golgi network ! No parse for: GO:0005811 lipid particle ! No parse for: GO:0005813 centrosome ! No parse for: GO:0005814 centriole ! No parse for: GO:0005815 microtubule organizing center ! No parse for: GO:0005816 spindle pole body ! No parse for: GO:0005818 aster ! No parse for: GO:0005819 spindle ! No parse for: GO:0005821 intermediate layer of spindle pole body ! No parse for: GO:0005822 inner plaque of spindle pole body ! No parse for: GO:0005823 central plaque of spindle pole body ! No parse for: GO:0005824 outer plaque of spindle pole body ! No parse for: GO:0005825 half bridge of spindle pole body ! No parse for: GO:0005826 contractile ring ! No parse for: GO:0005827 polar microtubule ! parse: GO:0005828 using "kinetochore microtubule" => cdef(GO:0005874, [OBO_REL:part_of=GO:0000776]) [-2] ! no existing xp def ! def: "Any of the spindle microtubules that attach to the kinetochores of chromosomes by their plus ends, and maneuver the chromosomes during mitotic or meiotic chromosome segregation." ! PROPOSED: microtubule that OBO_REL:part_of kinetochore [cdef(GO:0005874, [OBO_REL:part_of=GO:0000776])] [Term] id: GO:0005828 ! kinetochore microtubule intersection_of: GO:0005874 ! microtubule intersection_of: OBO_REL:part_of GO:0000776 ! kinetochore ! No parse for: GO:0005829 cytosol ! No parse for: GO:0005830 cytosolic ribosome (sensu Eukaryota) ! No parse for: GO:0005831 steroid hormone aporeceptor complex ! No parse for: GO:0005832 chaperonin-containing T-complex ! No parse for: GO:0005833 hemoglobin complex ! No parse for: GO:0005834 heterotrimeric G-protein complex ! No parse for: GO:0005835 fatty acid synthase complex ! No parse for: GO:0005836 fatty-acyl-CoA synthase complex ! No parse for: GO:0005838 proteasome regulatory particle (sensu Eukaryota) ! No parse for: GO:0005839 proteasome core complex (sensu Eukaryota) ! No parse for: GO:0005840 ribosome ! No parse for: GO:0005842 cytosolic large ribosomal subunit (sensu Eukaryota) ! No parse for: GO:0005843 cytosolic small ribosomal subunit (sensu Eukaryota) ! No parse for: GO:0005844 polysome ! No parse for: GO:0005845 mRNA cap complex ! No parse for: GO:0005846 nuclear cap binding complex ! No parse for: GO:0005847 mRNA cleavage and polyadenylation specificity factor complex ! No parse for: GO:0005848 mRNA cleavage stimulating factor complex ! No parse for: GO:0005849 mRNA cleavage factor complex ! No parse for: GO:0005850 eukaryotic translation initiation factor 2 complex ! No parse for: GO:0005851 eukaryotic translation initiation factor 2B complex ! No parse for: GO:0005852 eukaryotic translation initiation factor 3 complex ! No parse for: GO:0005853 eukaryotic translation elongation factor 1 complex ! No parse for: GO:0005854 nascent polypeptide-associated complex ! No parse for: GO:0005856 cytoskeleton ! No parse for: GO:0005858 axonemal dynein complex ! No parse for: GO:0005859 muscle myosin complex ! No parse for: GO:0005861 troponin complex ! No parse for: GO:0005862 muscle thin filament tropomyosin ! No parse for: GO:0005863 striated muscle thick filament ! No parse for: GO:0005865 striated muscle thin filament ! No parse for: GO:0005868 cytoplasmic dynein complex ! No parse for: GO:0005869 dynactin complex ! No parse for: GO:0005870 actin capping protein of dynactin complex ! No parse for: GO:0005871 kinesin complex ! No parse for: GO:0005872 minus-end kinesin complex ! No parse for: GO:0005873 plus-end kinesin complex ! No parse for: GO:0005874 microtubule ! No parse for: GO:0005875 microtubule associated complex ! parse: GO:0005876 using "spindle microtubule" => cdef(GO:0005874, [OBO_REL:part_of=GO:0005819]) [-2] ! no existing xp def ! def: "Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole." ! PROPOSED: microtubule that OBO_REL:part_of spindle [cdef(GO:0005874, [OBO_REL:part_of=GO:0005819])] [Term] id: GO:0005876 ! spindle microtubule intersection_of: GO:0005874 ! microtubule intersection_of: OBO_REL:part_of GO:0005819 ! spindle ! No parse for: GO:0005879 axonemal microtubule ! No parse for: GO:0005880 nuclear microtubule ! No parse for: GO:0005881 cytoplasmic microtubule ! No parse for: GO:0005882 intermediate filament ! No parse for: GO:0005883 neurofilament ! No parse for: GO:0005884 actin filament ! No parse for: GO:0005885 Arp2/3 protein complex ! No parse for: GO:0005886 plasma membrane ! No parse for: GO:0005887 integral to plasma membrane ! No parse for: GO:0005889 hydrogen:potassium-exchanging ATPase complex ! No parse for: GO:0005890 sodium:potassium-exchanging ATPase complex ! No parse for: GO:0005891 voltage-gated calcium channel complex ! No parse for: GO:0005892 nicotinic acetylcholine-gated receptor-channel complex ! parse: GO:0005893 using "interleukin-2 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-2, cell)]) [-14] ! no existing xp def ! def: "Complex that binds interleukin-2; comprises alpha, beta, and gamma subunits." ! PROPOSED: receptor complex that binds_to anon(interleukin-2, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-2, cell)])] [Term] id: GO:0005893 ! interleukin-2 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_2 ! parse: GO:0005894 using "interleukin-3 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-3, cell)]) [-14] ! no existing xp def ! def: "Complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-3 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-5." ! PROPOSED: receptor complex that binds_to anon(interleukin-3, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-3, cell)])] [Term] id: GO:0005894 ! interleukin-3 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_3 ! parse: GO:0005895 using "interleukin-5 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-5, cell)]) [-14] ! no existing xp def ! def: "Complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-5 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-3." ! PROPOSED: receptor complex that binds_to anon(interleukin-5, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-5, cell)])] [Term] id: GO:0005895 ! interleukin-5 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_5 ! parse: GO:0005896 using "interleukin-6 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-6, cell)]) [-14] ! no existing xp def ! def: "A hexameric complex consisting of two molecules each of interleukin-6, interleukin-6 receptor alpha chain, and gp-130." ! PROPOSED: receptor complex that binds_to anon(interleukin-6, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-6, cell)])] [Term] id: GO:0005896 ! interleukin-6 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_6 ! parse: GO:0005897 using "interleukin-9 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-9, cell)]) [-14] ! no existing xp def ! def: "Complex that binds interleukin-9; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-9 receptor, whereas the beta chain is shared with the receptors for several other interleukins." ! PROPOSED: receptor complex that binds_to anon(interleukin-9, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-9, cell)])] [Term] id: GO:0005897 ! interleukin-9 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_9 ! parse: GO:0005898 using "interleukin-13 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-1 3, cell)]) [-16] ! no existing xp def ! def: "A complex that binds interleukin-13; consists of two chains, interleukin-4 receptor alpha chain and interleukin-4 receptor alpha chain." ! PROPOSED: receptor complex that binds_to anon(interleukin-1 3, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-1 3, cell)])] [Term] id: GO:0005898 ! interleukin-13 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_1_3 synonym: "interleukin-1 3 receptor complex" EXACT [OBOL:automatic] ! parse: GO:0005899 using "insulin receptor complex" => cdef(GO:0043235, [binds_to=anon(insulin, cell)]) [-8] ! no existing xp def ! def: "A disulfide-bonded, heterotetrameric receptor complex. The alpha chains are entirely extracellular, while each beta chain has one transmembrane domain. The ligand binds to the alpha subunit extracellular domain and the kinase is associated with the beta subunit intracellular domain." ! PROPOSED: receptor complex that binds_to anon(insulin, cell) [cdef(GO:0043235, [binds_to=anon(insulin, cell)])] [Term] id: GO:0005899 ! insulin receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:insulin ! parse: GO:0005900 using "oncostatin-M receptor complex" => cdef(GO:0043235, [binds_to=anon(oncostatin-M, cell)]) [-13] ! no existing xp def ! def: "A heterodimeric receptor for the cytokine oncostatin-M (OSM). In humans the receptor complex is made up of the gene products gp130 and OSMR-beta." ! PROPOSED: receptor complex that binds_to anon(oncostatin-M, cell) [cdef(GO:0043235, [binds_to=anon(oncostatin-M, cell)])] [Term] id: GO:0005900 ! oncostatin-M receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:oncostatin_-_M ! No parse for: GO:0005901 caveola ! No parse for: GO:0005902 microvillus ! No parse for: GO:0005903 brush border ! No parse for: GO:0005904 plasma membrane lipid bilayer ! No parse for: GO:0005905 coated pit ! No parse for: GO:0005911 intercellular junction ! No parse for: GO:0005912 adherens junction ! No parse for: GO:0005913 cell-cell adherens junction ! No parse for: GO:0005914 spot adherens junction ! No parse for: GO:0005915 zonula adherens ! No parse for: GO:0005916 fascia adherens ! No parse for: GO:0005917 nephrocyte junction ! No parse for: GO:0005918 septate junction ! No parse for: GO:0005919 pleated septate junction ! No parse for: GO:0005920 smooth septate junction ! No parse for: GO:0005921 gap junction ! No parse for: GO:0005922 connexon complex ! No parse for: GO:0005923 tight junction ! No parse for: GO:0005924 cell-substrate adherens junction ! parse: GO:0005925 using "focal adhesion" => cdef(GO:0022610, [OBO_REL:results_in_adhesion_to=anon(focal, cell)]) [-6] ! no existing xp def ! def: "Small region on the surface of a cell that anchors the cell to the extracellular matrix and that are points of termination of actin filaments." ! PROPOSED: biological adhesion that OBO_REL:results_in_adhesion_to anon(focal, cell) [cdef(GO:0022610, [OBO_REL:results_in_adhesion_to=anon(focal, cell)])] [Term] id: GO:0005925 ! focal adhesion intersection_of: GO:0022610 ! biological adhesion intersection_of: OBO_REL:results_in_adhesion_to cell:focal synonym: "focal biological adhesion" EXACT [OBOL:automatic] ! No parse for: GO:0005926 connecting hemi-adherens junction ! No parse for: GO:0005927 muscle tendon junction ! No parse for: GO:0005928 apical hemi-adherens junction ! No parse for: GO:0005929 cilium ! No parse for: GO:0005930 axoneme ! No parse for: GO:0005931 nexin complex ! No parse for: GO:0005932 basal body ! No parse for: GO:0005933 cellular bud ! No parse for: GO:0005934 cellular bud tip ! No parse for: GO:0005935 cellular bud neck ! No parse for: GO:0005937 mating projection ! No parse for: GO:0005938 cell cortex ! No parse for: GO:0005940 septin ring ! No parse for: GO:0005941 unlocalized protein complex ! No parse for: GO:0005942 phosphoinositide 3-kinase complex ! No parse for: GO:0005943 1-phosphatidylinositol-4-phosphate kinase, class IA complex ! No parse for: GO:0005944 1-phosphatidylinositol-4-phosphate kinase, class IB complex ! No parse for: GO:0005945 6-phosphofructokinase complex ! No parse for: GO:0005946 alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) ! No parse for: GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex ! No parse for: GO:0005948 acetolactate synthase complex ! No parse for: GO:0005950 anthranilate synthase complex ! No parse for: GO:0005951 carbamoyl-phosphate synthase complex ! No parse for: GO:0005952 cAMP-dependent protein kinase complex ! No parse for: GO:0005953 CAAX-protein geranylgeranyltransferase complex ! No parse for: GO:0005954 calcium- and calmodulin-dependent protein kinase complex ! No parse for: GO:0005955 calcineurin complex ! No parse for: GO:0005956 protein kinase CK2 complex ! No parse for: GO:0005958 DNA-dependent protein kinase complex ! No parse for: GO:0005960 glycine cleavage complex ! No parse for: GO:0005961 glycine dehydrogenase complex (decarboxylating) ! No parse for: GO:0005962 mitochondrial isocitrate dehydrogenase complex (NAD+) ! No parse for: GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex ! No parse for: GO:0005964 phosphorylase kinase complex ! No parse for: GO:0005965 protein farnesyltransferase complex ! No parse for: GO:0005966 photoreceptor cyclic-nucleotide phosphodiesterase complex ! No parse for: GO:0005967 mitochondrial pyruvate dehydrogenase complex ! No parse for: GO:0005968 Rab-protein geranylgeranyltransferase complex ! No parse for: GO:0005969 serine-pyruvate aminotransferase, type 2B complex ! No parse for: GO:0005970 serine-pyruvate aminotransferase, type 1 complex ! No parse for: GO:0005971 ribonucleoside-diphosphate reductase complex ! No parse for: GO:0008002 lamina lucida ! No parse for: GO:0008003 lamina densa ! No parse for: GO:0008004 lamina reticularis ! No parse for: GO:0008021 synaptic vesicle ! No parse for: GO:0008023 transcription elongation factor complex ! No parse for: GO:0008024 transcription elongation factor complex b ! No parse for: GO:0008043 ferritin complex ! No parse for: GO:0008074 guanylate cyclase complex, soluble ! No parse for: GO:0008076 voltage-gated potassium channel complex ! No parse for: GO:0008087 light-activated voltage-gated calcium channel complex ! No parse for: GO:0008091 spectrin ! No parse for: GO:0008180 signalosome ! No parse for: GO:0008230 ecdysone receptor holocomplex ! parse: GO:0008231 using "repressor ecdysone receptor complex" => cdef(GO:0043235, [binds_to=anon(repressor ecdysone, cell)]) [-19] ! no existing xp def ! def: "A protein complex consisting of a heterodimer of Ecdysone receptor (EcR) and ultraspiracle (usp) plus an associated corepressor such as SMRTER, which represses transcription of target genes." ! PROPOSED: receptor complex that binds_to anon(repressor ecdysone, cell) [cdef(GO:0043235, [binds_to=anon(repressor ecdysone, cell)])] [Term] id: GO:0008231 ! repressor ecdysone receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:repressor_ecdysone ! parse: GO:0008232 using "activator ecdysone receptor complex" => cdef(GO:0043235, [binds_to=anon(activator ecdysone, cell)]) [-19] ! no existing xp def ! def: "A protein complex consisting of a heterodimer of Ecdysone receptor (EcR) and ultraspiracle (usp) bound to the ligand ecdysone, which activates transcription of target genes." ! PROPOSED: receptor complex that binds_to anon(activator ecdysone, cell) [cdef(GO:0043235, [binds_to=anon(activator ecdysone, cell)])] [Term] id: GO:0008232 ! activator ecdysone receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:activator_ecdysone ! No parse for: GO:0008247 2-acetyl-1-alkylglycerophosphocholine esterase complex ! No parse for: GO:0008250 oligosaccharyl transferase complex ! No parse for: GO:0008274 gamma-tubulin ring complex ! No parse for: GO:0008275 gamma-tubulin small complex ! No parse for: GO:0008278 cohesin complex ! No parse for: GO:0008280 cohesin core heterodimer ! No parse for: GO:0008282 ATP-sensitive potassium channel complex ! No parse for: GO:0008287 protein serine/threonine phosphatase complex ! No parse for: GO:0008290 F-actin capping protein complex ! No parse for: GO:0008303 caspase complex ! No parse for: GO:0008305 integrin complex ! parse: GO:0008328 using "ionotropic glutamate receptor complex" => cdef(GO:0043235, [binds_to=anon(ionotropic glutamate, cell)]) [-21] ! no existing xp def ! def: "A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex." ! PROPOSED: receptor complex that binds_to anon(ionotropic glutamate, cell) [cdef(GO:0043235, [binds_to=anon(ionotropic glutamate, cell)])] [Term] id: GO:0008328 ! ionotropic glutamate receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:ionotropic_glutamate ! No parse for: GO:0008352 katanin complex ! No parse for: GO:0008385 IkappaB kinase complex ! No parse for: GO:0008537 proteasome activator complex ! No parse for: GO:0008540 proteasome regulatory particle, base subcomplex (sensu Eukaryota) ! No parse for: GO:0008541 proteasome regulatory particle, lid subcomplex (sensu Eukaryota) ! No parse for: GO:0008622 epsilon DNA polymerase complex ! No parse for: GO:0008623 chromatin accessibility complex ! No parse for: GO:0009274 peptidoglycan-based cell wall ! No parse for: GO:0009275 20-80nm peptidoglycan-based cell wall ! No parse for: GO:0009276 1-2nm peptidoglycan-based cell wall ! No parse for: GO:0009277 chitin- and beta-glucan-containing cell wall ! No parse for: GO:0009279 cell outer membrane ! No parse for: GO:0009281 cytosolic ribosome (sensu Bacteria) ! No parse for: GO:0009282 cytosolic large ribosomal subunit (sensu Bacteria) ! No parse for: GO:0009283 cytosolic small ribosomal subunit (sensu Bacteria) ! No parse for: GO:0009288 flagellin-based flagellum ! No parse for: GO:0009289 fimbrium ! No parse for: GO:0009295 nucleoid ! No parse for: GO:0009316 3-isopropylmalate dehydratase complex ! No parse for: GO:0009317 acetyl-CoA carboxylase complex ! No parse for: GO:0009318 exodeoxyribonuclease VII complex ! No parse for: GO:0009319 cytochrome o ubiquinol oxidase complex ! No parse for: GO:0009320 phosphoribosylaminoimidazole carboxylase complex ! No parse for: GO:0009321 alkyl hydroperoxide reductase complex ! No parse for: GO:0009322 trimethylamine-N-oxide reductase complex ! No parse for: GO:0009323 ribosomal-protein-alanine N-acetyltransferase complex ! No parse for: GO:0009324 D-amino-acid dehydrogenase complex ! No parse for: GO:0009325 nitrate reductase complex ! No parse for: GO:0009326 formate dehydrogenase complex ! No parse for: GO:0009327 NAD(P)+ transhydrogenase complex (AB-specific) ! No parse for: GO:0009328 phenylalanine-tRNA ligase complex ! No parse for: GO:0009329 acetate CoA-transferase complex ! No parse for: GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing) ! No parse for: GO:0009331 glycerol-3-phosphate dehydrogenase complex ! No parse for: GO:0009332 glutamate-tRNA ligase complex ! No parse for: GO:0009333 cysteine synthase complex ! No parse for: GO:0009334 3-phenylpropionate dioxygenase complex ! No parse for: GO:0009336 sulfate adenylyltransferase complex (ATP) ! No parse for: GO:0009337 sulfite reductase complex (NADPH) ! No parse for: GO:0009338 exodeoxyribonuclease V complex ! No parse for: GO:0009339 glycolate oxidase complex ! No parse for: GO:0009340 DNA topoisomerase IV complex ! No parse for: GO:0009341 beta-galactosidase complex ! No parse for: GO:0009342 glutamate synthase complex (NADPH) ! No parse for: GO:0009343 biotin carboxylase complex ! No parse for: GO:0009344 nitrite reductase complex [NAD(P)H] ! No parse for: GO:0009345 glycine-tRNA ligase complex ! No parse for: GO:0009346 citrate lyase complex ! No parse for: GO:0009347 aspartate carbamoyltransferase complex ! No parse for: GO:0009348 ornithine carbamoyltransferase complex ! No parse for: GO:0009349 riboflavin synthase complex ! No parse for: GO:0009350 ethanolamine ammonia-lyase complex ! No parse for: GO:0009353 mitochondrial oxoglutarate dehydrogenase complex ! No parse for: GO:0009355 DNA polymerase V complex ! No parse for: GO:0009356 aminodeoxychorismate synthase complex ! No parse for: GO:0009357 protein-N(PI)-phosphohistidine-sugar phosphotransferase complex ! No parse for: GO:0009358 polyphosphate kinase complex ! No parse for: GO:0009359 Type II site-specific deoxyribonuclease complex ! No parse for: GO:0009360 DNA polymerase III complex ! No parse for: GO:0009361 succinate-CoA ligase complex (ADP-forming) ! No parse for: GO:0009365 protein histidine kinase complex ! No parse for: GO:0009366 enterobactin synthetase complex ! No parse for: GO:0009367 prepilin peptidase complex ! No parse for: GO:0009368 endopeptidase Clp complex ! No parse for: GO:0009375 ferredoxin hydrogenase complex ! No parse for: GO:0009376 HslUV protease complex ! No parse for: GO:0009379 Holliday junction helicase complex ! No parse for: GO:0009380 excinuclease ABC complex ! No parse for: GO:0009382 imidazoleglycerol-phosphate synthase complex ! No parse for: GO:0009390 dimethyl sulfoxide reductase complex ! No parse for: GO:0009418 fimbrial shaft ! No parse for: GO:0009419 fimbrial tip ! No parse for: GO:0009420 flagellar filament ! No parse for: GO:0009421 flagellar filament cap ! No parse for: GO:0009422 flagellar hook-filament junction ! No parse for: GO:0009424 flagellar hook ! parse: GO:0009425 using "flagellin-based flagellum basal body" => cdef(GO:0005932, [OBO_REL:part_of=GO:0009288]) [-2] ! no existing xp def ! def: "One of the three major substructures of the flagellin-based flagellum; a structure consisting of a rod, a series of rings, the Mot proteins, the switch complex and the flagellum-specific export apparatus. The rings anchor the flagellum to the cytoplasmic membrane (MS ring), the peptidoglycan (P ring) and the outer membrane (L ring)." ! PROPOSED: basal body that OBO_REL:part_of flagellin-based flagellum [cdef(GO:0005932, [OBO_REL:part_of=GO:0009288])] [Term] id: GO:0009425 ! flagellin-based flagellum basal body intersection_of: GO:0005932 ! basal body intersection_of: OBO_REL:part_of GO:0009288 ! flagellin-based flagellum synonym: "flagellum (sensu Bacteria) basal body" EXACT [OBOL:automatic] ! No parse for: GO:0009426 flagellar basal body, distal rod ! No parse for: GO:0009427 flagellar basal body, distal rod, L ring ! No parse for: GO:0009428 flagellar basal body, distal rod, P ring ! No parse for: GO:0009429 flagellar basal body, proximal rod ! No parse for: GO:0009431 flagellar basal body, MS ring ! No parse for: GO:0009433 flagellar basal body, C ring ! No parse for: GO:0009434 microtubule-based flagellum ! No parse for: GO:0009501 amyloplast ! No parse for: GO:0009502 photosynthetic electron transport chain ! parse: GO:0009503 using "thylakoid light-harvesting complex" => cdef(GO:0030076, [OBO_REL:part_of=GO:0009579]) [-2] ! no existing xp def ! def: "A thylakoid membrane complex of chlorophylls a and b together with chlorophyll a-b binding proteins. In addition, LHCs contain a number of other proteins, the function of which is speculative, together with accessory pigments. The LHCs capture and transfer energy to photosystems I and II. As in, but not restricted to, green plants and algae (Viridiplantae, ncbi_taxonomy_id:33090)." ! PROPOSED: light-harvesting complex that OBO_REL:part_of thylakoid [cdef(GO:0030076, [OBO_REL:part_of=GO:0009579])] [Term] id: GO:0009503 ! thylakoid light-harvesting complex intersection_of: GO:0030076 ! light-harvesting complex intersection_of: OBO_REL:part_of GO:0009579 ! thylakoid ! No parse for: GO:0009504 cell plate ! No parse for: GO:0009505 cellulose and pectin-containing cell wall ! No parse for: GO:0009506 plasmodesma ! No parse for: GO:0009507 chloroplast ! parse: GO:0009508 using "plastid chromosome" => cdef(GO:0005694, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "A circular DNA molecule containing plastid encoded genes." ! PROPOSED: chromosome that OBO_REL:part_of plastid [cdef(GO:0005694, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0009508 ! plastid chromosome intersection_of: GO:0005694 ! chromosome intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0009509 chromoplast ! No parse for: GO:0009510 plasmodesmatal desmotubule ! No parse for: GO:0009511 plasmodesmatal endoplasmic reticulum ! No parse for: GO:0009512 cytochrome b6f complex ! No parse for: GO:0009513 etioplast ! No parse for: GO:0009514 glyoxysome ! No parse for: GO:0009515 granal stacked thylakoid ! No parse for: GO:0009516 leucoplast ! No parse for: GO:0009517 PSII associated light-harvesting complex II ! No parse for: GO:0009518 PSI associated light-harvesting complex I ! No parse for: GO:0009519 middle lamella ! No parse for: GO:0009521 photosystem ! No parse for: GO:0009522 photosystem I ! No parse for: GO:0009523 photosystem II ! No parse for: GO:0009524 phragmoplast ! No parse for: GO:0009525 phragmosome ! parse: GO:0009526 using "plastid envelope" => cdef(GO:0031975, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "The double lipid bilayer enclosing a plastid and separating its contents from the rest of the cytoplasm; includes the intermembrane space." ! PROPOSED: envelope that OBO_REL:part_of plastid [cdef(GO:0031975, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0009526 ! plastid envelope intersection_of: GO:0031975 ! envelope intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! parse: GO:0009527 using "plastid outer membrane" => cdef(GO:0019867, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "The outer, i.e. cytoplasm-facing, lipid bilayer of the plastid envelope." ! PROPOSED: outer membrane that OBO_REL:part_of plastid [cdef(GO:0019867, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0009527 ! plastid outer membrane intersection_of: GO:0019867 ! outer membrane intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0009528 plastid inner membrane ! No parse for: GO:0009529 plastid intermembrane space ! No parse for: GO:0009530 primary cell wall ! No parse for: GO:0009531 secondary cell wall ! No parse for: GO:0009532 plastid stroma ! No parse for: GO:0009533 chloroplast stromal thylakoid ! parse: GO:0009534 using "chloroplast thylakoid" => cdef(GO:0009579, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana." ! PROPOSED: thylakoid that OBO_REL:part_of chloroplast [cdef(GO:0009579, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0009534 ! chloroplast thylakoid intersection_of: GO:0009579 ! thylakoid intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! parse: GO:0009535 using "chloroplast thylakoid membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0009534]) [-2] ! parse: GO:0009535 using "chloroplast thylakoid membrane" => cdef(GO:0042651, [OBO_REL:part_of=GO:0009507]) [-2] ! parse: GO:0009535 using "chloroplast thylakoid membrane" => cdef(cdef(GO:0016020, [OBO_REL:part_of=GO:0009579]), [OBO_REL:part_of=GO:0009507]) [-3] ! no existing xp def ! def: "The pigmented membrane of a chloroplast thylakoid." ! PROPOSED: thylakoid membrane that OBO_REL:part_of chloroplast [cdef(GO:0042651, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0009535 ! chloroplast thylakoid membrane intersection_of: GO:0042651 ! thylakoid membrane intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0009536 plastid ! No parse for: GO:0009537 proplastid ! No parse for: GO:0009538 photosystem I reaction center ! No parse for: GO:0009539 photosystem II reaction center ! No parse for: GO:0009541 etioplast prolamellar body ! No parse for: GO:0009542 granum ! parse: GO:0009543 using "chloroplast thylakoid lumen" => cdef(GO:0031977, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "The cavity enclosed within the chloroplast thylakoid membrane." ! PROPOSED: thylakoid lumen that OBO_REL:part_of chloroplast [cdef(GO:0031977, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0009543 ! chloroplast thylakoid lumen intersection_of: GO:0031977 ! thylakoid lumen intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0009544 chloroplast ATP synthase complex ! No parse for: GO:0009545 elaioplast ! No parse for: GO:0009546 plasmodesmatal cytoplasmic sleeve ! parse: GO:0009547 using "plastid ribosome" => cdef(GO:0005840, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "A ribosome contained within a plastid." ! PROPOSED: ribosome that OBO_REL:part_of plastid [cdef(GO:0005840, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0009547 ! plastid ribosome intersection_of: GO:0005840 ! ribosome intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0009548 plasmodesmatal plasma membrane ! No parse for: GO:0009549 cellulose microfibril ! No parse for: GO:0009550 primary plasmodesma ! No parse for: GO:0009551 secondary plasmodesma ! parse: GO:0009568 using "amyloplast starch grain" => cdef(GO:0043036, [OBO_REL:part_of=GO:0009501]) [-2] ! parse: GO:0009568 using "amyloplast starch granule" => cdef(GO:0043036, [OBO_REL:part_of=GO:0009501]) [-2] ! no existing xp def ! def: "Plant storage body for amylose and amylopectin, 1-100um in diameter, and located in amyloplasts. Also contains small amounts of enzymes, amino acids, lipids and nucleic acids. The shape of the grain varies widely amongst species, but is often spherical or disk-shaped." ! PROPOSED: starch grain that OBO_REL:part_of amyloplast [cdef(GO:0043036, [OBO_REL:part_of=GO:0009501])] [Term] id: GO:0009568 ! amyloplast starch grain intersection_of: GO:0043036 ! starch grain intersection_of: OBO_REL:part_of GO:0009501 ! amyloplast ! parse: GO:0009569 using "chloroplast starch grain" => cdef(GO:0043036, [OBO_REL:part_of=GO:0009507]) [-2] ! parse: GO:0009569 using "chloroplast starch granule" => cdef(GO:0043036, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "Plant storage body for amylose and amylopectin, 1-100um in diameter, and located in chloroplasts. Also contains small amounts of enzymes, amino acids, lipids and nucleic acids. The shape of the grain varies widely amongst species, but is often spherical or disk-shaped." ! PROPOSED: starch grain that OBO_REL:part_of chloroplast [cdef(GO:0043036, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0009569 ! chloroplast starch grain intersection_of: GO:0043036 ! starch grain intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0009570 chloroplast stroma ! No parse for: GO:0009571 proplastid stroma ! parse: GO:0009573 using "chloroplast ribulose bisphosphate carboxylase complex" => cdef(GO:0048492, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "A complex containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate." ! PROPOSED: ribulose bisphosphate carboxylase complex that OBO_REL:part_of chloroplast [cdef(GO:0048492, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0009573 ! chloroplast ribulose bisphosphate carboxylase complex intersection_of: GO:0048492 ! ribulose bisphosphate carboxylase complex intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast synonym: "chloroplast RubisCO complex" EXACT [OBOL:automatic] ! No parse for: GO:0009574 preprophase band ! No parse for: GO:0009575 chromoplast stroma ! No parse for: GO:0009576 leucoplast stroma ! No parse for: GO:0009577 elaioplast stroma ! No parse for: GO:0009578 etioplast stroma ! No parse for: GO:0009579 thylakoid ! No parse for: GO:0009654 oxygen evolving complex ! No parse for: GO:0009655 PSII associated light-harvesting complex II, core complex ! No parse for: GO:0009656 PSII associated light-harvesting complex II, peripheral complex ! No parse for: GO:0009705 membrane of vacuole with cell cycle-independent morphology ! No parse for: GO:0009706 chloroplast inner membrane ! parse: GO:0009707 using "chloroplast outer membrane" => cdef(GO:0019867, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope." ! PROPOSED: outer membrane that OBO_REL:part_of chloroplast [cdef(GO:0019867, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0009707 ! chloroplast outer membrane intersection_of: GO:0019867 ! outer membrane intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0009782 photosystem I antenna complex ! No parse for: GO:0009783 photosystem II antenna complex ! No parse for: GO:0009840 chloroplastic endopeptidase Clp complex ! No parse for: GO:0009841 mitochondrial endopeptidase Clp complex ! No parse for: GO:0009842 cyanelle ! parse: GO:0009843 using "cyanelle thylakoid" => cdef(GO:0009579, [OBO_REL:part_of=GO:0009842]) [-2] ! no existing xp def ! def: "Photosynthetic membrane resembling that of cyanobacteria found in the cyanelles of certain algae." ! PROPOSED: thylakoid that OBO_REL:part_of cyanelle [cdef(GO:0009579, [OBO_REL:part_of=GO:0009842])] [Term] id: GO:0009843 ! cyanelle thylakoid intersection_of: GO:0009579 ! thylakoid intersection_of: OBO_REL:part_of GO:0009842 ! cyanelle ! No parse for: GO:0009897 external side of plasma membrane ! No parse for: GO:0009898 internal side of plasma membrane ! No parse for: GO:0009921 auxin efflux carrier complex ! No parse for: GO:0009923 fatty acid elongase complex ! No parse for: GO:0009925 basal plasma membrane ! No parse for: GO:0009930 longitudinal side of cell surface ! parse: GO:0009941 using "chloroplast envelope" => cdef(GO:0031975, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space." ! PROPOSED: envelope that OBO_REL:part_of chloroplast [cdef(GO:0031975, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0009941 ! chloroplast envelope intersection_of: GO:0031975 ! envelope intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0009986 cell surface ! No parse for: GO:0010005 cortical microtubule, transverse to long axis ! No parse for: GO:0010006 Toc complex ! No parse for: GO:0010007 magnesium chelatase complex ! parse: GO:0010008 using "endosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005768]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding an endosome." ! PROPOSED: membrane that OBO_REL:part_of endosome [cdef(GO:0016020, [OBO_REL:part_of=GO:0005768])] [Term] id: GO:0010008 ! endosome membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005768 ! endosome ! No parse for: GO:0010009 external side of endosome membrane ! No parse for: GO:0010168 ER body ! No parse for: GO:0010169 myrosinase complex ! No parse for: GO:0010170 glucose-1-phosphate adenylyltransferase complex ! parse: GO:0010240 using "plastid pyruvate dehydrogenase complex" => cdef(GO:0045254, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). This complex is found in plant plastids and is distinct from the one found in mitochondria." ! PROPOSED: pyruvate dehydrogenase complex that OBO_REL:part_of plastid [cdef(GO:0045254, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0010240 ! plastid pyruvate dehydrogenase complex intersection_of: GO:0045254 ! pyruvate dehydrogenase complex intersection_of: OBO_REL:part_of GO:0009536 ! plastid synonym: "plastid pyruvate dehydrogenase complex (lipoamide)" EXACT [OBOL:automatic] ! No parse for: GO:0010278 chloroplast outer membrane translocon ! No parse for: GO:0010282 senescence associated vacuole ! No parse for: GO:0010287 plastoglobule ! No parse for: GO:0010316 pyrophosphate-dependent phosphofructokinase complex ! No parse for: GO:0010317 pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex ! No parse for: GO:0010318 pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex ! No parse for: GO:0010319 stromule ! No parse for: GO:0010330 cellulose synthase complex ! No parse for: GO:0010339 external side of cell wall ! parse: GO:0010367 using "extracellular isoamylase complex" => cdef(GO:0043033, [OBO_REL:part_of=GO:0005576]) [-2] ! no existing xp def ! def: "A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages. Isoamylases in animals are localized in the extracellular space." ! PROPOSED: isoamylase complex that OBO_REL:part_of extracellular region [cdef(GO:0043033, [OBO_REL:part_of=GO:0005576])] [Term] id: GO:0010367 ! extracellular isoamylase complex intersection_of: GO:0043033 ! isoamylase complex intersection_of: OBO_REL:part_of GO:0005576 ! extracellular region synonym: "extracellular region isoamylase complex" EXACT [OBOL:automatic] ! parse: GO:0010368 using "chloroplast isoamylase complex" => cdef(GO:0043033, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages. Isoamylases in plants are intracellular and probably chloroplast localised." ! PROPOSED: isoamylase complex that OBO_REL:part_of chloroplast [cdef(GO:0043033, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0010368 ! chloroplast isoamylase complex intersection_of: GO:0043033 ! isoamylase complex intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0010369 chromocenter ! No parse for: GO:0010370 perinucleolar chromocenter ! No parse for: GO:0012505 endomembrane system ! parse: GO:0012506 using "vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031982]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding any membrane-bounded vesicle in the cell." ! PROPOSED: membrane that OBO_REL:part_of vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0031982])] [Term] id: GO:0012506 ! vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0031982 ! vesicle ! parse: GO:0012507 using "ER to Golgi transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030134]) [-2] ! parse: GO:0012507 using "ER-Golgi transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030134]) [-2] ! parse: GO:0012507 using "endoplasmic reticulum to Golgi transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030134]) [-2] ! parse: GO:0012507 using "endoplasmic reticulum-Golgi transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030134]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi." ! PROPOSED: membrane that OBO_REL:part_of ER to Golgi transport vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0030134])] [Term] id: GO:0012507 ! ER to Golgi transport vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0030134 ! ER to Golgi transport vesicle synonym: "COPII-coated vesicle membrane" EXACT [OBOL:automatic] ! parse: GO:0012508 using "Golgi to ER transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030142]) [-2] ! parse: GO:0012508 using "Golgi to endoplasmic reticulum transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030142]) [-2] ! parse: GO:0012508 using "Golgi-ER transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030142]) [-2] ! parse: GO:0012508 using "Golgi-endoplasmic reticulum transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030142]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a vesicle transporting substances from the Golgi to the ER." ! PROPOSED: membrane that OBO_REL:part_of Golgi to ER transport vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0030142])] [Term] id: GO:0012508 ! Golgi to ER transport vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0030142 ! Golgi to ER transport vesicle ! parse: GO:0012509 using "inter-Golgi transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030143]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a vesicle transporting substances within the Golgi." ! PROPOSED: membrane that OBO_REL:part_of inter-Golgi transport vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0030143])] [Term] id: GO:0012509 ! inter-Golgi transport vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0030143 ! inter-Golgi transport vesicle ! parse: GO:0012510 using "TGN transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030140]) [-2] ! parse: GO:0012510 using "TGN transport vesicle membrane" => cdef(GO:0030658, [OBO_REL:part_of=GO:0005802]) [-2] ! parse: GO:0012510 using "TGN transport vesicle membrane" => cdef(cdef(GO:0016020, [OBO_REL:part_of=GO:0030133]), [OBO_REL:part_of=GO:0005802]) [-3] ! parse: GO:0012510 using "trans-Golgi network transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030140]) [-2] ! parse: GO:0012510 using "trans-Golgi network transport vesicle membrane" => cdef(GO:0030658, [OBO_REL:part_of=GO:0005802]) [-2] ! parse: GO:0012510 using "trans-Golgi network transport vesicle membrane" => cdef(cdef(GO:0016020, [OBO_REL:part_of=GO:0030133]), [OBO_REL:part_of=GO:0005802]) [-3] ! no existing xp def ! def: "The lipid bilayer surrounding a vesicle transporting substances between the trans-Golgi network and other parts of the cell." ! PROPOSED: transport vesicle membrane that OBO_REL:part_of trans-Golgi network [cdef(GO:0030658, [OBO_REL:part_of=GO:0005802])] [Term] id: GO:0012510 ! trans-Golgi network transport vesicle membrane intersection_of: GO:0030658 ! transport vesicle membrane intersection_of: OBO_REL:part_of GO:0005802 ! trans-Golgi network ! No parse for: GO:0012511 monolayer-surrounded lipid storage body ! No parse for: GO:0014069 postsynaptic density ! No parse for: GO:0015030 Cajal body ! No parse for: GO:0015050 methane monooxygenase complex ! No parse for: GO:0015627 type II protein secretion system complex ! No parse for: GO:0015629 actin cytoskeleton ! parse: GO:0015630 using "microtubule cytoskeleton" => cdef(GO:0005856, [OBO_REL:part_of=GO:0005874]) [-2] ! no existing xp def ! def: "The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins." ! PROPOSED: cytoskeleton that OBO_REL:part_of microtubule [cdef(GO:0005856, [OBO_REL:part_of=GO:0005874])] [Term] id: GO:0015630 ! microtubule cytoskeleton intersection_of: GO:0005856 ! cytoskeleton intersection_of: OBO_REL:part_of GO:0005874 ! microtubule ! No parse for: GO:0015934 large ribosomal subunit ! No parse for: GO:0015935 small ribosomal subunit ! No parse for: GO:0016006 Nebenkern ! No parse for: GO:0016007 mitochondrial derivative ! No parse for: GO:0016008 major mitochondrial derivative ! No parse for: GO:0016009 minor mitochondrial derivative ! No parse for: GO:0016010 dystrophin-associated glycoprotein complex ! No parse for: GO:0016011 dystroglycan complex ! No parse for: GO:0016012 sarcoglycan complex ! No parse for: GO:0016013 syntrophin complex ! No parse for: GO:0016014 dystrobrevin complex ! No parse for: GO:0016020 membrane ! No parse for: GO:0016021 integral to membrane ! No parse for: GO:0016022 endoplasmic reticulum cisterna ! No parse for: GO:0016023 cytoplasmic membrane-bound vesicle ! No parse for: GO:0016027 inaD signaling complex ! No parse for: GO:0016028 rhabdomere ! No parse for: GO:0016029 subrhabdomeral cisterna ! No parse for: GO:0016035 zeta DNA polymerase complex ! No parse for: GO:0016222 procollagen-proline, 2-oxoglutarate-4-dioxygenase complex ! No parse for: GO:0016234 inclusion body ! No parse for: GO:0016235 aggresome ! No parse for: GO:0016272 prefoldin complex ! No parse for: GO:0016281 eukaryotic translation initiation factor 4F complex ! No parse for: GO:0016282 eukaryotic 43S preinitiation complex ! No parse for: GO:0016283 eukaryotic 48S initiation complex ! No parse for: GO:0016323 basolateral plasma membrane ! No parse for: GO:0016324 apical plasma membrane ! No parse for: GO:0016327 apicolateral plasma membrane ! No parse for: GO:0016328 lateral plasma membrane ! No parse for: GO:0016342 catenin complex ! No parse for: GO:0016363 nuclear matrix ! No parse for: GO:0016442 RNA-induced silencing complex ! No parse for: GO:0016456 X chromosome located dosage compensation complex, transcription activating ! No parse for: GO:0016459 myosin complex ! No parse for: GO:0016460 myosin II complex ! No parse for: GO:0016461 unconventional myosin complex ! No parse for: GO:0016465 chaperonin ATPase complex ! No parse for: GO:0016469 proton-transporting two-sector ATPase complex ! No parse for: GO:0016471 vacuolar proton-transporting V-type ATPase complex ! No parse for: GO:0016472 sodium ion-transporting two-sector ATPase complex ! No parse for: GO:0016473 sodium ion-transporting F-type ATPase complex ! No parse for: GO:0016474 sodium ion-transporting V-type ATPase complex ! No parse for: GO:0016507 fatty acid beta-oxidation multienzyme complex ! No parse for: GO:0016513 core-binding factor complex ! No parse for: GO:0016514 SWI/SNF complex ! parse: GO:0016516 using "interleukin-4 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-4, cell)]) [-14] ! no existing xp def ! def: "Complexes that bind interleukin-4; consist of alpha, beta, and gamma chains and exist in three forms, one containing extracellular transmembrane and cytoplasmic domains, one lacking the cytoplasmic domain and a third that is secreted." ! PROPOSED: receptor complex that binds_to anon(interleukin-4, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-4, cell)])] [Term] id: GO:0016516 ! interleukin-4 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_4 ! No parse for: GO:0016528 sarcoplasm ! No parse for: GO:0016529 sarcoplasmic reticulum ! No parse for: GO:0016533 cyclin-dependent protein kinase 5 activator complex ! No parse for: GO:0016580 Sin3 complex ! No parse for: GO:0016581 NuRD complex ! No parse for: GO:0016585 chromatin remodeling complex ! No parse for: GO:0016586 RSC complex ! No parse for: GO:0016587 ISW1 complex ! No parse for: GO:0016589 NURF complex ! No parse for: GO:0016590 ACF complex ! No parse for: GO:0016591 DNA-directed RNA polymerase II, holoenzyme ! No parse for: GO:0016592 Srb-mediator complex ! No parse for: GO:0016593 Cdc73/Paf1 complex ! No parse for: GO:0016599 caveolar membrane ! No parse for: GO:0016600 flotillin complex ! No parse for: GO:0016602 CCAAT-binding factor complex ! No parse for: GO:0016604 nuclear body ! No parse for: GO:0016605 PML body ! No parse for: GO:0016606 Lands ! No parse for: GO:0016607 nuclear speck ! No parse for: GO:0016610 nitrogenase complex ! No parse for: GO:0016611 iron-iron nitrogenase complex ! No parse for: GO:0016612 molybdenum-iron nitrogenase complex ! No parse for: GO:0016613 vanadium-iron nitrogenase complex ! No parse for: GO:0016914 follicle-stimulating hormone complex ! No parse for: GO:0016935 glycine-gated chloride channel complex ! No parse for: GO:0016938 kinesin I complex ! No parse for: GO:0016939 kinesin II complex ! No parse for: GO:0016942 insulin-like growth factor binding protein complex ! No parse for: GO:0017023 myosin phosphatase complex ! No parse for: GO:0017053 transcriptional repressor complex ! No parse for: GO:0017054 negative cofactor 2 complex ! No parse for: GO:0017059 serine C-palmitoyltransferase complex ! No parse for: GO:0017071 intracellular cyclic nucleotide activated cation channel complex ! No parse for: GO:0017086 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) complex ! No parse for: GO:0017087 mitochondrial processing peptidase complex ! No parse for: GO:0017090 meprin A complex ! No parse for: GO:0017101 aminoacyl-tRNA synthetase multienzyme complex ! No parse for: GO:0017102 methionyl glutamyl tRNA synthetase complex ! No parse for: GO:0017109 glutamate-cysteine ligase complex ! No parse for: GO:0017117 single-stranded DNA-dependent ATP-dependent DNA helicase complex ! No parse for: GO:0017119 Golgi transport complex ! No parse for: GO:0017122 UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase complex ! No parse for: GO:0017133 mitochondrial electron transfer flavoprotein complex ! parse: GO:0017146 using "N-methyl-D-aspartate selective glutamate receptor complex" => cdef(GO:0043235, [binds_to=anon(N-methyl-D-aspartate selective glutamate, cell)]) [-41] ! no existing xp def ! def: "An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. NMDA receptors are composed of assemblies of NR1 subunits (Figure 3) and NR2 subunits, which can be one of four separate gene products (NR2A-D). Expression of both subunits are required to form functional channels. The glutamate binding domain is formed at the junction of NR1 and NR2 subunits. NMDA receptors are permeable to calcium ions as well as being permeable to other ions. Thus NMDA receptor activation leads to a calcium influx into the post-synaptic cells, a signal thought to be crucial for the induction of NMDA-receptor dependent LTP and LTD." ! PROPOSED: receptor complex that binds_to anon(N-methyl-D-aspartate selective glutamate, cell) [cdef(GO:0043235, [binds_to=anon(N-methyl-D-aspartate selective glutamate, cell)])] [Term] id: GO:0017146 ! N-methyl-D-aspartate selective glutamate receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:N_-_methyl_-_D_-_aspartate_selective_glutamate ! No parse for: GO:0017177 alpha-glucosidase II complex ! No parse for: GO:0018444 translation release factor complex ! No parse for: GO:0018994 polar granule ! No parse for: GO:0018995 host ! No parse for: GO:0019005 SCF ubiquitin ligase complex ! No parse for: GO:0019008 molybdopterin synthase complex ! No parse for: GO:0019012 virion ! No parse for: GO:0019013 viral nucleocapsid ! No parse for: GO:0019015 viral genome ! No parse for: GO:0019016 non-segmented viral genome ! No parse for: GO:0019017 segmented viral genome ! No parse for: GO:0019018 bipartite viral genome ! No parse for: GO:0019019 tripartite viral genome ! No parse for: GO:0019020 multipartite viral genome ! No parse for: GO:0019021 DNA viral genome ! No parse for: GO:0019022 RNA viral genome ! No parse for: GO:0019023 dsRNA viral genome ! No parse for: GO:0019024 ssRNA viral genome ! No parse for: GO:0019025 positive sense viral genome ! No parse for: GO:0019026 negative sense viral genome ! No parse for: GO:0019027 ambisense viral genome ! No parse for: GO:0019028 viral capsid ! No parse for: GO:0019029 helical viral capsid ! No parse for: GO:0019030 icosahedral viral capsid ! No parse for: GO:0019031 viral envelope ! No parse for: GO:0019033 viral tegument ! No parse for: GO:0019034 viral replication complex ! No parse for: GO:0019035 viral integration complex ! No parse for: GO:0019036 viral transcriptional complex ! No parse for: GO:0019037 viral assembly intermediate ! No parse for: GO:0019038 provirus ! No parse for: GO:0019183 histamine-gated chloride channel complex ! No parse for: GO:0019185 snRNA-activating protein complex ! No parse for: GO:0019197 phosphoenolpyruvate-dependent sugar phosphotransferase complex ! No parse for: GO:0019717 synaptosome ! No parse for: GO:0019718 rough microsome ! No parse for: GO:0019719 smooth microsome ! No parse for: GO:0019773 proteasome core complex, alpha-subunit complex (sensu Eukaryota) ! No parse for: GO:0019774 proteasome core complex, beta-subunit complex (sensu Eukaryota) ! No parse for: GO:0019804 quinolinate synthetase complex ! No parse for: GO:0019812 Type I site-specific deoxyribonuclease complex ! No parse for: GO:0019813 Type III site-specific deoxyribonuclease complex ! No parse for: GO:0019814 immunoglobulin complex ! parse: GO:0019815 using "B cell receptor complex" => cdef(GO:0043235, [binds_to=CL:0000236]) [-2] ! parse: GO:0019815 using "B lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=CL:0000236]) [-2] ! parse: GO:0019815 using "B-cell receptor complex" => cdef(GO:0043235, [binds_to=CL:0000236]) [-2] ! parse: GO:0019815 using "B-lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=CL:0000236]) [-2] ! no existing xp def ! def: "A membrane-bound antigen receptor complex consisting in its basic form of an antigen-binding subunit (the membrane immunoglobulin or mIg), comprised of two identical heavy chains and two identical light chains held together by disulfide bonds, and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins." ! PROPOSED: receptor complex that binds_to B cell [cdef(GO:0043235, [binds_to=CL:0000236])] [Term] id: GO:0019815 ! B cell receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to CL:0000236 ! B cell ! No parse for: GO:0019819 P1 peroxisome ! No parse for: GO:0019820 P2 peroxisome ! No parse for: GO:0019821 P3 peroxisome ! No parse for: GO:0019822 P4 peroxisome ! No parse for: GO:0019823 P5 peroxisome ! No parse for: GO:0019824 P6 peroxisome ! No parse for: GO:0019861 flagellum ! No parse for: GO:0019866 organelle inner membrane ! No parse for: GO:0019867 outer membrane ! No parse for: GO:0019897 extrinsic to plasma membrane ! No parse for: GO:0019898 extrinsic to membrane ! No parse for: GO:0019907 cyclin-dependent protein kinase activating kinase holoenzyme complex ! No parse for: GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex ! No parse for: GO:0019910 mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase complex ! parse: GO:0020002 using "host cell plasma membrane" => cdef(GO:0005886, [OBO_REL:part_of=GO:0043657]) [-2] ! no existing xp def ! def: "The plasma membrane surrounding a host cell." ! PROPOSED: plasma membrane that OBO_REL:part_of host cell [cdef(GO:0005886, [OBO_REL:part_of=GO:0043657])] [Term] id: GO:0020002 ! host cell plasma membrane intersection_of: GO:0005886 ! plasma membrane intersection_of: OBO_REL:part_of GO:0043657 ! host cell synonym: "host cell cell membrane" EXACT [OBOL:automatic] synonym: "host cell cytoplasmic membrane" EXACT [OBOL:automatic] synonym: "host cell plasmalemma" EXACT [OBOL:automatic] ! No parse for: GO:0020003 parasitophorous vacuole ! No parse for: GO:0020004 parasitophorous vacuolar space ! No parse for: GO:0020005 parasitophorous vacuolar membrane ! No parse for: GO:0020006 parasitophorous vacuolar membrane network ! No parse for: GO:0020007 apical complex ! No parse for: GO:0020008 rhoptry ! No parse for: GO:0020009 microneme ! No parse for: GO:0020010 conoid ! No parse for: GO:0020011 apicoplast ! No parse for: GO:0020015 glycosome ! No parse for: GO:0020016 flagellar pocket ! No parse for: GO:0020017 flagellar membrane ! parse: GO:0020018 using "flagellar pocket membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0020016]) [-2] ! no existing xp def ! def: "That part of the plasma membrane found in the flagellar pocket." ! PROPOSED: membrane that OBO_REL:part_of flagellar pocket [cdef(GO:0016020, [OBO_REL:part_of=GO:0020016])] [Term] id: GO:0020018 ! flagellar pocket membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0020016 ! flagellar pocket ! No parse for: GO:0020020 food vacuole ! No parse for: GO:0020022 acidocalcisome ! No parse for: GO:0020023 kinetoplast ! No parse for: GO:0020025 subpellicular microtubule ! No parse for: GO:0020026 merozoite dense granule ! No parse for: GO:0020030 infected host cell surface knob ! No parse for: GO:0020031 polar ring of apical complex ! No parse for: GO:0020032 basal ring of apical complex ! No parse for: GO:0020036 Maurer's cleft ! No parse for: GO:0020038 subpellicular network ! No parse for: GO:0020039 pellicle ! No parse for: GO:0030008 TRAPP complex ! No parse for: GO:0030014 CCR4-NOT complex ! No parse for: GO:0030015 CCR4-NOT core complex ! No parse for: GO:0030016 myofibril ! No parse for: GO:0030017 sarcomere ! No parse for: GO:0030018 Z disc ! No parse for: GO:0030027 lamellipodium ! No parse for: GO:0030054 cell junction ! No parse for: GO:0030055 cell-matrix junction ! No parse for: GO:0030056 hemidesmosome ! No parse for: GO:0030057 desmosome ! No parse for: GO:0030061 mitochondrial crista ! No parse for: GO:0030062 mitochondrial tricarboxylic acid cycle enzyme complex ! No parse for: GO:0030075 plasma membrane-derived thylakoid ! No parse for: GO:0030076 light-harvesting complex ! parse: GO:0030077 using "plasma membrane light-harvesting complex" => cdef(GO:0030076, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A plasma membrane protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center." ! PROPOSED: light-harvesting complex that OBO_REL:part_of plasma membrane [cdef(GO:0030076, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0030077 ! plasma membrane light-harvesting complex intersection_of: GO:0030076 ! light-harvesting complex intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane light-harvesting complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane light-harvesting complex" EXACT [OBOL:automatic] synonym: "plasmalemma light-harvesting complex" EXACT [OBOL:automatic] ! No parse for: GO:0030078 light-harvesting complex, core complex ! No parse for: GO:0030079 light-harvesting complex, peripheral complex ! No parse for: GO:0030080 B875 antenna complex ! No parse for: GO:0030081 B800-820 antenna complex ! No parse for: GO:0030082 B800-850 antenna complex ! No parse for: GO:0030083 PSI associated light-harvesting complex I, LHCIa subcomplex ! No parse for: GO:0030084 PSI associated light-harvesting complex I, LHCIb subcomplex ! No parse for: GO:0030085 PSII associated light-harvesting complex II, peripheral complex, LHCIIb subcomplex ! No parse for: GO:0030089 phycobilisome ! No parse for: GO:0030090 reaction center (sensu ProteoBacteria) ! parse: GO:0030093 using "chloroplast photosystem I" => cdef(GO:0009522, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "Photosystem located in the chloroplast that functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin." ! PROPOSED: photosystem I that OBO_REL:part_of chloroplast [cdef(GO:0009522, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0030093 ! chloroplast photosystem I intersection_of: GO:0009522 ! photosystem I intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! parse: GO:0030094 using "plasma membrane photosystem I" => cdef(GO:0009522, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A protein complex located in the plasma membrane-derived thylakoid. The photosystem functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin." ! PROPOSED: photosystem I that OBO_REL:part_of plasma membrane [cdef(GO:0009522, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0030094 ! plasma membrane-derived photosystem I intersection_of: GO:0009522 ! photosystem I intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane photosystem I" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane photosystem I" EXACT [OBOL:automatic] synonym: "plasmalemma photosystem I" EXACT [OBOL:automatic] ! parse: GO:0030095 using "chloroplast photosystem II" => cdef(GO:0009523, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "An integral chloroplast membrane complex containing the P680 reaction center. In the light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone." ! PROPOSED: photosystem II that OBO_REL:part_of chloroplast [cdef(GO:0009523, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0030095 ! chloroplast photosystem II intersection_of: GO:0009523 ! photosystem II intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! parse: GO:0030096 using "plasma membrane photosystem II" => cdef(GO:0009523, [OBO_REL:part_of=GO:0005886]) [-2] ! parse: GO:0030096 using "plasma membrane-derived thylakoid photosystem II" => cdef(GO:0009523, [OBO_REL:part_of=GO:0030075]) [-2] ! no existing xp def ! def: "A protein complex, located in the membrane-derived thylakoid, containing the P680 reaction center. In the light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone." ! PROPOSED: photosystem II that OBO_REL:part_of plasma membrane-derived thylakoid [cdef(GO:0009523, [OBO_REL:part_of=GO:0030075])] [Term] id: GO:0030096 ! plasma membrane-derived thylakoid photosystem II intersection_of: GO:0009523 ! photosystem II intersection_of: OBO_REL:part_of GO:0030075 ! plasma membrane-derived thylakoid synonym: "thylakoid (sensu Cyanobacteria) photosystem II" EXACT [OBOL:automatic] ! No parse for: GO:0030112 glycocalyx ! No parse for: GO:0030114 slime layer ! No parse for: GO:0030115 S-layer ! No parse for: GO:0030117 membrane coat ! No parse for: GO:0030118 clathrin coat ! No parse for: GO:0030119 membrane coat adaptor complex ! No parse for: GO:0030120 vesicle coat ! No parse for: GO:0030121 AP-1 adaptor complex ! No parse for: GO:0030122 AP-2 adaptor complex ! No parse for: GO:0030123 AP-3 adaptor complex ! No parse for: GO:0030124 AP-4 adaptor complex ! No parse for: GO:0030125 clathrin vesicle coat ! No parse for: GO:0030126 COPI vesicle coat ! No parse for: GO:0030127 COPII vesicle coat ! No parse for: GO:0030128 clathrin coat of endocytic vesicle ! No parse for: GO:0030129 clathrin coat of synaptic vesicle ! No parse for: GO:0030130 clathrin coat of trans-Golgi network vesicle ! No parse for: GO:0030131 clathrin adaptor complex ! No parse for: GO:0030132 clathrin coat of coated pit ! No parse for: GO:0030133 transport vesicle ! No parse for: GO:0030134 ER to Golgi transport vesicle ! No parse for: GO:0030135 coated vesicle ! No parse for: GO:0030136 clathrin-coated vesicle ! No parse for: GO:0030137 COPI-coated vesicle ! No parse for: GO:0030139 endocytic vesicle ! parse: GO:0030140 using "TGN transport vesicle" => cdef(GO:0030133, [OBO_REL:part_of=GO:0005802]) [-2] ! parse: GO:0030140 using "trans-Golgi network transport vesicle" => cdef(GO:0030133, [OBO_REL:part_of=GO:0005802]) [-2] ! no existing xp def ! def: "A vesicle that mediates transport between the trans-Golgi network and other parts of the cell." ! PROPOSED: transport vesicle that OBO_REL:part_of trans-Golgi network [cdef(GO:0030133, [OBO_REL:part_of=GO:0005802])] [Term] id: GO:0030140 ! trans-Golgi network transport vesicle intersection_of: GO:0030133 ! transport vesicle intersection_of: OBO_REL:part_of GO:0005802 ! trans-Golgi network ! No parse for: GO:0030141 secretory granule ! No parse for: GO:0030142 Golgi to ER transport vesicle ! No parse for: GO:0030143 inter-Golgi transport vesicle ! No parse for: GO:0030173 integral to Golgi membrane ! No parse for: GO:0030175 filopodium ! No parse for: GO:0030176 integral to endoplasmic reticulum membrane ! No parse for: GO:0030232 insulin control element activator complex ! No parse for: GO:0030256 type I protein secretion system complex ! No parse for: GO:0030257 type III protein secretion system complex ! No parse for: GO:0030285 integral to synaptic vesicle membrane ! No parse for: GO:0030286 dynein complex ! No parse for: GO:0030287 cell wall-bounded periplasmic space ! No parse for: GO:0030288 outer membrane-bounded periplasmic space ! No parse for: GO:0030289 protein phosphatase 4 complex ! No parse for: GO:0030312 external encapsulating structure ! No parse for: GO:0030313 cell envelope ! No parse for: GO:0030314 junctional membrane complex ! No parse for: GO:0030315 T-tubule ! No parse for: GO:0030386 ferredoxin:thioredoxin reductase complex ! No parse for: GO:0030424 axon ! No parse for: GO:0030425 dendrite ! No parse for: GO:0030426 growth cone ! parse: GO:0030427 using "site of polarized growth" => cdef(GO:0040007, [OBO_REL:results_in_increase_in_mass_of=anon(site of polarized, cell)]) [-18] ! no existing xp def ! def: "Any part of a cell where non-isotropic growth takes place." ! PROPOSED: growth that OBO_REL:results_in_increase_in_mass_of anon(site of polarized, cell) [cdef(GO:0040007, [OBO_REL:results_in_increase_in_mass_of=anon(site of polarized, cell)])] [Term] id: GO:0030427 ! site of polarized growth intersection_of: GO:0040007 ! growth intersection_of: OBO_REL:results_in_increase_in_mass_of cell:site_of_polarized ! No parse for: GO:0030428 cell septum ! parse: GO:0030430 using "host cell cytoplasm" => cdef(GO:0005737, [OBO_REL:part_of=GO:0043657]) [-2] ! no existing xp def ! def: "The cytoplasm of a host cell." ! PROPOSED: cytoplasm that OBO_REL:part_of host cell [cdef(GO:0005737, [OBO_REL:part_of=GO:0043657])] [Term] id: GO:0030430 ! host cell cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: OBO_REL:part_of GO:0043657 ! host cell ! No parse for: GO:0030445 yeast-form cell wall ! No parse for: GO:0030446 hyphal cell wall ! No parse for: GO:0030478 actin cap ! No parse for: GO:0030479 actin cortical patch ! No parse for: GO:0030482 actin cable ! No parse for: GO:0030485 smooth muscle contractile fiber ! No parse for: GO:0030486 smooth muscle dense body ! No parse for: GO:0030496 midbody ! No parse for: GO:0030526 granulocyte macrophage colony-stimulating factor receptor complex ! No parse for: GO:0030529 ribonucleoprotein complex ! No parse for: GO:0030530 heterogeneous nuclear ribonucleoprotein complex ! No parse for: GO:0030531 small cytoplasmic ribonucleoprotein complex ! No parse for: GO:0030532 small nuclear ribonucleoprotein complex ! parse: GO:0030658 using "transport vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030133]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a transport vesicle." ! PROPOSED: membrane that OBO_REL:part_of transport vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0030133])] [Term] id: GO:0030658 ! transport vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0030133 ! transport vesicle ! parse: GO:0030659 using "cytoplasmic vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031410]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a cytoplasmic vesicle." ! PROPOSED: membrane that OBO_REL:part_of cytoplasmic vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0031410])] [Term] id: GO:0030659 ! cytoplasmic vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0031410 ! cytoplasmic vesicle ! parse: GO:0030660 using "Golgi-associated vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005798]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a vesicle associated with the Golgi apparatus." ! PROPOSED: membrane that OBO_REL:part_of Golgi-associated vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0005798])] [Term] id: GO:0030660 ! Golgi-associated vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005798 ! Golgi-associated vesicle ! parse: GO:0030661 using "chitosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0045009]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a chitosome." ! PROPOSED: membrane that OBO_REL:part_of chitosome [cdef(GO:0016020, [OBO_REL:part_of=GO:0045009])] [Term] id: GO:0030661 ! chitosome membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0045009 ! chitosome ! parse: GO:0030662 using "coated vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030135]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a coated vesicle." ! PROPOSED: membrane that OBO_REL:part_of coated vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0030135])] [Term] id: GO:0030662 ! coated vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0030135 ! coated vesicle ! No parse for: GO:0030663 COPI coated vesicle membrane ! No parse for: GO:0030665 clathrin coated vesicle membrane ! parse: GO:0030666 using "endocytic vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030139]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding an endocytic vesicle." ! PROPOSED: membrane that OBO_REL:part_of endocytic vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0030139])] [Term] id: GO:0030666 ! endocytic vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0030139 ! endocytic vesicle synonym: "endocytotic transport vesicle membrane" EXACT [OBOL:automatic] synonym: "endocytotic vesicle membrane" EXACT [OBOL:automatic] ! parse: GO:0030667 using "secretory granule membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030141]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a secretory granule." ! PROPOSED: membrane that OBO_REL:part_of secretory granule [cdef(GO:0016020, [OBO_REL:part_of=GO:0030141])] [Term] id: GO:0030667 ! secretory granule membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0030141 ! secretory granule ! parse: GO:0030668 using "merozoite dense granule membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0020026]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a dense granule of the type found in apicomplexan parasites." ! PROPOSED: membrane that OBO_REL:part_of merozoite dense granule [cdef(GO:0016020, [OBO_REL:part_of=GO:0020026])] [Term] id: GO:0030668 ! merozoite dense granule membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0020026 ! merozoite dense granule synonym: "dense body membrane" EXACT [OBOL:automatic] synonym: "dense granule (sensu Apicomplexa) membrane" EXACT [OBOL:automatic] ! parse: GO:0030669 using "clathrin-coated endocytic vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0045334]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a clathrin-coated endocytic vesicle." ! PROPOSED: membrane that OBO_REL:part_of clathrin-coated endocytic vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0045334])] [Term] id: GO:0030669 ! clathrin-coated endocytic vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0045334 ! clathrin-coated endocytic vesicle ! parse: GO:0030670 using "phagocytic vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0045335]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a phagocytic vesicle." ! PROPOSED: membrane that OBO_REL:part_of phagocytic vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0045335])] [Term] id: GO:0030670 ! phagocytic vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0045335 ! phagocytic vesicle synonym: "phagosome membrane" EXACT [OBOL:automatic] ! parse: GO:0030671 using "clathrin-coated phagocytic vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0045336]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a clathrin-coated phagocytic vesicle." ! PROPOSED: membrane that OBO_REL:part_of clathrin-coated phagocytic vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0045336])] [Term] id: GO:0030671 ! clathrin-coated phagocytic vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0045336 ! clathrin-coated phagocytic vesicle synonym: "clathrin-coated phagosome membrane" EXACT [OBOL:automatic] ! parse: GO:0030672 using "synaptic vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0008021]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a synaptic vesicle." ! PROPOSED: membrane that OBO_REL:part_of synaptic vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0008021])] [Term] id: GO:0030672 ! synaptic vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0008021 ! synaptic vesicle ! No parse for: GO:0030673 axolemma ! No parse for: GO:0030677 ribonuclease P complex ! No parse for: GO:0030678 mitochondrial ribonuclease P complex ! parse: GO:0030679 using "cyanelle RNase P complex" => cdef(GO:0030677, [OBO_REL:part_of=GO:0009842]) [-2] ! parse: GO:0030679 using "cyanelle ribonuclease P complex" => cdef(GO:0030677, [OBO_REL:part_of=GO:0009842]) [-2] ! no existing xp def ! def: "A ribonuclease P complex located in the cyanelle, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. The best characterized cyanelle ribonuclease P complex, from the alga Cyanophora paradoxa, contains a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules." ! PROPOSED: ribonuclease P complex that OBO_REL:part_of cyanelle [cdef(GO:0030677, [OBO_REL:part_of=GO:0009842])] [Term] id: GO:0030679 ! cyanelle ribonuclease P complex intersection_of: GO:0030677 ! ribonuclease P complex intersection_of: OBO_REL:part_of GO:0009842 ! cyanelle ! No parse for: GO:0030680 dimeric ribonuclease P complex ! No parse for: GO:0030681 multimeric ribonuclease P complex ! No parse for: GO:0030684 preribosome ! No parse for: GO:0030685 nucleolar preribosome ! No parse for: GO:0030686 90S preribosome ! No parse for: GO:0030687 nucleolar preribosome, large subunit precursor ! No parse for: GO:0030688 nucleolar preribosome, small subunit precursor ! No parse for: GO:0030689 Noc complex ! No parse for: GO:0030690 Noc1p-Noc2p complex ! No parse for: GO:0030691 Noc2p-Noc3p complex ! No parse for: GO:0030692 Noc4p-Nop14p complex ! No parse for: GO:0030694 flagellar basal body, rod ! No parse for: GO:0030700 glycine reductase complex ! No parse for: GO:0030849 autosome ! No parse for: GO:0030863 cortical cytoskeleton ! No parse for: GO:0030864 cortical actin cytoskeleton ! parse: GO:0030867 using "rough ER membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005791]) [-2] ! parse: GO:0030867 using "rough endoplasmic reticulum membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005791]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding the rough endoplasmic reticulum." ! PROPOSED: membrane that OBO_REL:part_of rough endoplasmic reticulum [cdef(GO:0016020, [OBO_REL:part_of=GO:0005791])] [Term] id: GO:0030867 ! rough endoplasmic reticulum membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005791 ! rough endoplasmic reticulum ! parse: GO:0030868 using "smooth ER membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005790]) [-2] ! parse: GO:0030868 using "smooth endoplasmic reticulum membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005790]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding the smooth endoplasmic reticulum." ! PROPOSED: membrane that OBO_REL:part_of smooth endoplasmic reticulum [cdef(GO:0016020, [OBO_REL:part_of=GO:0005790])] [Term] id: GO:0030868 ! smooth endoplasmic reticulum membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005790 ! smooth endoplasmic reticulum ! No parse for: GO:0030869 RENT complex ! No parse for: GO:0030870 Mre11 complex ! No parse for: GO:0030871 cytosolic ribosome (sensu Archaea) ! No parse for: GO:0030872 cytosolic large ribosomal subunit (sensu Archaea) ! No parse for: GO:0030873 cytosolic small ribosomal subunit (sensu Archaea) ! No parse for: GO:0030874 nucleolar chromatin ! No parse for: GO:0030875 rDNA protrusion ! parse: GO:0030876 using "interleukin-20 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-2 0, cell)]) [-16] ! no existing xp def ! def: "Complex that binds interleukin-20; comprises an alpha and a beta subunit." ! PROPOSED: receptor complex that binds_to anon(interleukin-2 0, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-2 0, cell)])] [Term] id: GO:0030876 ! interleukin-20 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_2_0 synonym: "interleukin-2 0 receptor complex" EXACT [OBOL:automatic] ! No parse for: GO:0030877 beta-catenin destruction complex ! No parse for: GO:0030880 RNA polymerase complex ! No parse for: GO:0030891 VCB complex ! No parse for: GO:0030892 mitotic cohesin complex ! No parse for: GO:0030893 meiotic cohesin complex ! No parse for: GO:0030894 replisome ! No parse for: GO:0030895 apolipoprotein B mRNA editing enzyme complex ! No parse for: GO:0030896 checkpoint clamp complex ! No parse for: GO:0030897 HOPS complex ! No parse for: GO:0030904 retromer complex ! No parse for: GO:0030905 retromer complex, outer shell ! No parse for: GO:0030906 retromer complex, inner shell ! No parse for: GO:0030907 MBF transcription complex ! No parse for: GO:0030914 STAGA complex ! No parse for: GO:0030915 Smc5-Smc6 complex ! No parse for: GO:0030929 ADPG pyrophosphorylase complex ! No parse for: GO:0030930 homotetrameric ADPG pyrophosphorylase complex ! No parse for: GO:0030931 heterotetrameric ADPG pyrophosphorylase complex ! parse: GO:0030932 using "amyloplast ADPG pyrophosphorylase complex" => cdef(GO:0030929, [OBO_REL:part_of=GO:0009501]) [-2] ! no existing xp def ! def: "An ADPG pyrophosphorylase complex found in the amyloplast." ! PROPOSED: ADPG pyrophosphorylase complex that OBO_REL:part_of amyloplast [cdef(GO:0030929, [OBO_REL:part_of=GO:0009501])] [Term] id: GO:0030932 ! amyloplast ADPG pyrophosphorylase complex intersection_of: GO:0030929 ! ADPG pyrophosphorylase complex intersection_of: OBO_REL:part_of GO:0009501 ! amyloplast ! parse: GO:0030933 using "chloroplast ADPG pyrophosphorylase complex" => cdef(GO:0030929, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "An ADPG pyrophosphorylase complex found in the chloroplast." ! PROPOSED: ADPG pyrophosphorylase complex that OBO_REL:part_of chloroplast [cdef(GO:0030929, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0030933 ! chloroplast ADPG pyrophosphorylase complex intersection_of: GO:0030929 ! ADPG pyrophosphorylase complex intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0030934 anchoring collagen ! No parse for: GO:0030935 sheet-forming collagen ! parse: GO:0030936 using "transmembrane collagen" => cdef(GO:0005581, [OBO_REL:part_of=GO:0016021]) [-2] ! no existing xp def ! def: "Any collagen polymer that passes through a lipid bilayer membrane." ! PROPOSED: collagen that OBO_REL:part_of integral to membrane [cdef(GO:0005581, [OBO_REL:part_of=GO:0016021])] [Term] id: GO:0030936 ! transmembrane collagen intersection_of: GO:0005581 ! collagen intersection_of: OBO_REL:part_of GO:0016021 ! integral to membrane synonym: "integral to membrane collagen" EXACT [OBOL:automatic] ! No parse for: GO:0030937 collagen type XVII ! No parse for: GO:0030938 collagen type XVIII ! No parse for: GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex ! No parse for: GO:0030958 RITS complex ! No parse for: GO:0030964 NADH dehydrogenase complex (quinone) ! No parse for: GO:0030966 NADH dehydrogenase complex (quinone) (sensu Bacteria) ! parse: GO:0030981 using "cortical microtubule cytoskeleton" => cdef(GO:0005856, [OBO_REL:part_of=GO:0055028]) [-2] ! no existing xp def ! def: "The portion of the microtubule cytoskeleton that lies just beneath the plasma membrane." ! PROPOSED: cytoskeleton that OBO_REL:part_of cortical microtubule [cdef(GO:0005856, [OBO_REL:part_of=GO:0055028])] [Term] id: GO:0030981 ! cortical microtubule cytoskeleton intersection_of: GO:0005856 ! cytoskeleton intersection_of: OBO_REL:part_of GO:0055028 ! cortical microtubule ! parse: GO:0030988 using "high molecular weight kininogen receptor complex" => cdef(GO:0043235, [binds_to=anon(high molecular weight kininogen, cell)]) [-32] ! no existing xp def ! def: "A protein complex that acts as a receptor for high molecular weight kininogens. In humans, this receptor includes the CK1 and uPAR proteins." ! PROPOSED: receptor complex that binds_to anon(high molecular weight kininogen, cell) [cdef(GO:0043235, [binds_to=anon(high molecular weight kininogen, cell)])] [Term] id: GO:0030988 ! high molecular weight kininogen receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:high_molecular_weight_kininogen ! No parse for: GO:0030990 intraflagellar transport particle ! No parse for: GO:0030991 intraflagellar transport particle A ! No parse for: GO:0030992 intraflagellar transport particle B ! No parse for: GO:0030993 axonemal heterotrimeric kinesin-II complex ! No parse for: GO:0030998 linear element ! No parse for: GO:0031002 actin rod ! No parse for: GO:0031003 actin tubule ! No parse for: GO:0031004 potassium ion-transporting ATPase complex ! parse: GO:0031009 using "plastid ADPG pyrophosphorylase complex" => cdef(GO:0030929, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "An ADPG pyrophosphorylase complex found in a plastid." ! PROPOSED: ADPG pyrophosphorylase complex that OBO_REL:part_of plastid [cdef(GO:0030929, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0031009 ! plastid ADPG pyrophosphorylase complex intersection_of: GO:0030929 ! ADPG pyrophosphorylase complex intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0031010 ISWI complex ! No parse for: GO:0031011 INO80 complex ! No parse for: GO:0031012 extracellular matrix ! No parse for: GO:0031015 karyopherin docking complex ! No parse for: GO:0031019 mitochondrial mRNA editing complex ! parse: GO:0031020 using "plastid editosome" => cdef(GO:0045293, [OBO_REL:part_of=GO:0009536]) [-2] ! parse: GO:0031020 using "plastid mRNA editing complex" => cdef(GO:0045293, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "An mRNA editing complex found in a plastid." ! PROPOSED: mRNA editing complex that OBO_REL:part_of plastid [cdef(GO:0045293, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0031020 ! plastid mRNA editing complex intersection_of: GO:0045293 ! mRNA editing complex intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0031021 interphase microtubule organizing center ! No parse for: GO:0031026 glutamate synthase complex ! No parse for: GO:0031027 glutamate synthase complex (NADH) ! No parse for: GO:0031039 macronucleus ! No parse for: GO:0031040 micronucleus ! No parse for: GO:0031045 dense core granule ! No parse for: GO:0031074 nucleocytoplasmic shuttling complex ! No parse for: GO:0031080 Nup107-160 complex ! No parse for: GO:0031082 BLOC complex ! No parse for: GO:0031083 BLOC-1 complex ! No parse for: GO:0031084 BLOC-2 complex ! No parse for: GO:0031085 BLOC-3 complex ! parse: GO:0031088 using "platelet dense granule membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042827]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding the platelet dense granule." ! PROPOSED: membrane that OBO_REL:part_of platelet dense granule [cdef(GO:0016020, [OBO_REL:part_of=GO:0042827])] [Term] id: GO:0031088 ! platelet dense granule membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042827 ! platelet dense granule synonym: "bull ' s eye body membrane" EXACT [OBOL:automatic] synonym: "platelet dense body membrane" EXACT [OBOL:automatic] ! No parse for: GO:0031089 platelet dense granule lumen ! parse: GO:0031090 using "organelle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0043226]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding an organelle." ! PROPOSED: membrane that OBO_REL:part_of organelle [cdef(GO:0016020, [OBO_REL:part_of=GO:0043226])] [Term] id: GO:0031090 ! organelle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0043226 ! organelle ! No parse for: GO:0031091 platelet alpha granule ! parse: GO:0031092 using "platelet alpha granule membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031091]) [-2] ! parse: GO:0031092 using "platelet alpha-granule membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031091]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding the platelet alpha granule." ! PROPOSED: membrane that OBO_REL:part_of platelet alpha granule [cdef(GO:0016020, [OBO_REL:part_of=GO:0031091])] [Term] id: GO:0031092 ! platelet alpha granule membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0031091 ! platelet alpha granule ! No parse for: GO:0031093 platelet alpha granule lumen ! No parse for: GO:0031094 platelet dense tubular network ! parse: GO:0031095 using "platelet dense tubular network membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031094]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding the platelet dense tubular network." ! PROPOSED: membrane that OBO_REL:part_of platelet dense tubular network [cdef(GO:0016020, [OBO_REL:part_of=GO:0031094])] [Term] id: GO:0031095 ! platelet dense tubular network membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0031094 ! platelet dense tubular network ! No parse for: GO:0031096 platelet dense tubular network lumen ! No parse for: GO:0031097 medial ring ! No parse for: GO:0031105 septin complex ! No parse for: GO:0031143 pseudopodium ! No parse for: GO:0031160 spore wall ! No parse for: GO:0031164 contractile vacuolar membrane ! No parse for: GO:0031165 integral to contractile vacuolar membrane ! No parse for: GO:0031166 integral to vacuolar membrane ! No parse for: GO:0031201 SNARE complex ! No parse for: GO:0031205 endoplasmic reticulum Sec complex ! No parse for: GO:0031206 Sec complex-associated translocon complex ! No parse for: GO:0031207 Sec62/Sec63 complex ! No parse for: GO:0031209 SCAR complex ! No parse for: GO:0031211 palmitoyltransferase complex ! No parse for: GO:0031213 RSF complex ! No parse for: GO:0031224 intrinsic to membrane ! No parse for: GO:0031225 anchored to membrane ! No parse for: GO:0031226 intrinsic to plasma membrane ! No parse for: GO:0031227 intrinsic to endoplasmic reticulum membrane ! No parse for: GO:0031228 intrinsic to Golgi membrane ! No parse for: GO:0031229 intrinsic to nuclear inner membrane ! No parse for: GO:0031230 intrinsic to cell outer membrane ! No parse for: GO:0031231 intrinsic to peroxisomal membrane ! No parse for: GO:0031232 extrinsic to external side of plasma membrane ! No parse for: GO:0031233 intrinsic to external side of plasma membrane ! No parse for: GO:0031234 extrinsic to internal side of plasma membrane ! No parse for: GO:0031235 intrinsic to internal side of plasma membrane ! No parse for: GO:0031236 extrinsic to external side of plasma membrane, in periplasmic space ! No parse for: GO:0031237 intrinsic to external side of plasma membrane, in periplasmic space ! No parse for: GO:0031240 external side of cell outer membrane ! No parse for: GO:0031241 internal side of cell outer membrane ! No parse for: GO:0031242 extrinsic to external side of cell outer membrane ! No parse for: GO:0031243 intrinsic to external side of cell outer membrane ! No parse for: GO:0031244 extrinsic to cell outer membrane ! No parse for: GO:0031245 extrinsic to internal side of cell outer membrane ! No parse for: GO:0031246 intrinsic to internal side of cell outer membrane ! No parse for: GO:0031248 protein acetyltransferase complex ! No parse for: GO:0031250 anaerobic ribonucleoside-triphosphate reductase complex ! No parse for: GO:0031251 PAN complex ! No parse for: GO:0031252 leading edge ! parse: GO:0031253 using "cell projection membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042995]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding a cell surface projection." ! PROPOSED: membrane that OBO_REL:part_of cell projection [cdef(GO:0016020, [OBO_REL:part_of=GO:0042995])] [Term] id: GO:0031253 ! cell projection membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042995 ! cell projection ! No parse for: GO:0031254 trailing edge ! No parse for: GO:0031255 lateral part of motile cell ! parse: GO:0031256 using "leading edge membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031252]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding the leading edge of a motile cell." ! PROPOSED: membrane that OBO_REL:part_of leading edge [cdef(GO:0016020, [OBO_REL:part_of=GO:0031252])] [Term] id: GO:0031256 ! leading edge membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0031252 ! leading edge synonym: "front of cell membrane" EXACT [OBOL:automatic] ! parse: GO:0031257 using "trailing edge membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031254]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding the trailing edge of a motile cell." ! PROPOSED: membrane that OBO_REL:part_of trailing edge [cdef(GO:0016020, [OBO_REL:part_of=GO:0031254])] [Term] id: GO:0031257 ! trailing edge membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0031254 ! trailing edge synonym: "back of cell membrane" EXACT [OBOL:automatic] ! parse: GO:0031258 using "lamellipodium membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030027]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding a lamellipodium." ! PROPOSED: membrane that OBO_REL:part_of lamellipodium [cdef(GO:0016020, [OBO_REL:part_of=GO:0030027])] [Term] id: GO:0031258 ! lamellipodium membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0030027 ! lamellipodium ! parse: GO:0031259 using "uropod membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0001931]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding a uropod." ! PROPOSED: membrane that OBO_REL:part_of uropod [cdef(GO:0016020, [OBO_REL:part_of=GO:0001931])] [Term] id: GO:0031259 ! uropod membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0001931 ! uropod ! parse: GO:0031260 using "pseudopodium membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031143]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding a pseudopodium." ! PROPOSED: membrane that OBO_REL:part_of pseudopodium [cdef(GO:0016020, [OBO_REL:part_of=GO:0031143])] [Term] id: GO:0031260 ! pseudopodium membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0031143 ! pseudopodium synonym: "pseudopod membrane" EXACT [OBOL:automatic] ! No parse for: GO:0031261 DNA replication preinitiation complex ! No parse for: GO:0031262 Ndc80 complex ! No parse for: GO:0031264 death-inducing signaling complex ! No parse for: GO:0031265 CD95 death-inducing signaling complex ! No parse for: GO:0031266 TRAIL death-inducing signaling complex ! No parse for: GO:0031298 replication fork protection complex ! No parse for: GO:0031300 intrinsic to organelle membrane ! No parse for: GO:0031301 integral to organelle membrane ! No parse for: GO:0031302 intrinsic to endosome membrane ! No parse for: GO:0031303 integral to endosome membrane ! No parse for: GO:0031304 intrinsic to mitochondrial inner membrane ! No parse for: GO:0031305 integral to mitochondrial inner membrane ! No parse for: GO:0031306 intrinsic to mitochondrial outer membrane ! No parse for: GO:0031307 integral to mitochondrial outer membrane ! No parse for: GO:0031308 intrinsic to nuclear outer membrane ! No parse for: GO:0031309 integral to nuclear outer membrane ! No parse for: GO:0031310 intrinsic to vacuolar membrane ! No parse for: GO:0031311 intrinsic to contractile vacuolar membrane ! No parse for: GO:0031312 extrinsic to organelle membrane ! No parse for: GO:0031313 extrinsic to endosome membrane ! No parse for: GO:0031314 extrinsic to mitochondrial inner membrane ! No parse for: GO:0031315 extrinsic to mitochondrial outer membrane ! No parse for: GO:0031316 extrinsic to nuclear outer membrane ! No parse for: GO:0031317 tripartite ATP-independent periplasmic transporter complex ! No parse for: GO:0031332 RNAi effector complex ! No parse for: GO:0031350 intrinsic to plastid membrane ! No parse for: GO:0031351 integral to plastid membrane ! No parse for: GO:0031352 intrinsic to plastid inner membrane ! No parse for: GO:0031353 integral to plastid inner membrane ! No parse for: GO:0031354 intrinsic to plastid outer membrane ! No parse for: GO:0031355 integral to plastid outer membrane ! No parse for: GO:0031356 intrinsic to chloroplast inner membrane ! No parse for: GO:0031357 integral to chloroplast inner membrane ! No parse for: GO:0031358 intrinsic to chloroplast outer membrane ! No parse for: GO:0031359 integral to chloroplast outer membrane ! No parse for: GO:0031360 intrinsic to thylakoid membrane ! No parse for: GO:0031361 integral to thylakoid membrane ! No parse for: GO:0031362 anchored to external side of plasma membrane ! No parse for: GO:0031371 ubiquitin conjugating enzyme complex ! No parse for: GO:0031372 UBC13-MMS2 complex ! No parse for: GO:0031373 cytosolic fatty acid synthase complex ! No parse for: GO:0031374 cytosolic type I fatty acid synthase complex ! No parse for: GO:0031375 type II fatty acid synthase complex ! No parse for: GO:0031376 cytosolic type II fatty acid synthase complex ! No parse for: GO:0031377 mitochondrial type II fatty acid synthase complex ! parse: GO:0031378 using "plastid type II fatty acid synthase complex" => cdef(GO:0031375, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "A fatty acid synthase complex in which each polypeptide chain catalyzes a single activity, located in a plastid." ! PROPOSED: type II fatty acid synthase complex that OBO_REL:part_of plastid [cdef(GO:0031375, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0031378 ! plastid type II fatty acid synthase complex intersection_of: GO:0031375 ! type II fatty acid synthase complex intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0031379 RNA-directed RNA polymerase complex ! No parse for: GO:0031380 nuclear RNA-directed RNA polymerase complex ! No parse for: GO:0031381 viral RNA-directed RNA polymerase complex ! No parse for: GO:0031387 MPF complex ! No parse for: GO:0031389 Rad17 RFC-like complex ! No parse for: GO:0031390 Ctf18 RFC-like complex ! No parse for: GO:0031391 Elg1 RFC-like complex ! No parse for: GO:0031395 bursicon neuropeptide hormone complex ! No parse for: GO:0031410 cytoplasmic vesicle ! No parse for: GO:0031411 gas vesicle ! No parse for: GO:0031414 N-terminal protein acetyltransferase complex ! No parse for: GO:0031415 NatA complex ! No parse for: GO:0031416 NatB complex ! No parse for: GO:0031417 NatC complex ! No parse for: GO:0031421 invertasome ! No parse for: GO:0031422 RecQ helicase-Topo III complex ! No parse for: GO:0031428 box C/D snoRNP complex ! No parse for: GO:0031429 box H/ACA snoRNP complex ! No parse for: GO:0031430 M line ! No parse for: GO:0031431 Dbf4-dependent protein kinase complex ! No parse for: GO:0031436 BRCA1-BARD1 complex ! No parse for: GO:0031461 cullin-RING ubiquitin ligase complex ! No parse for: GO:0031462 Cul2-RING ubiquitin ligase complex ! No parse for: GO:0031463 Cul3-RING ubiquitin ligase complex ! No parse for: GO:0031464 Cul4A-RING ubiquitin ligase complex ! No parse for: GO:0031465 Cul4B-RING ubiquitin ligase complex ! No parse for: GO:0031466 Cul5-RING ubiquitin ligase complex ! No parse for: GO:0031467 Cul7-RING ubiquitin ligase complex ! No parse for: GO:0031469 polyhedral organelle ! No parse for: GO:0031470 carboxysome ! No parse for: GO:0031471 ethanolamine degradation polyhedral organelle ! No parse for: GO:0031472 propanediol degradation polyhedral organelle ! No parse for: GO:0031474 myosin IV complex ! No parse for: GO:0031475 myosin V complex ! No parse for: GO:0031476 myosin VI complex ! No parse for: GO:0031477 myosin VII complex ! No parse for: GO:0031478 myosin VIII complex ! No parse for: GO:0031479 myosin IX complex ! No parse for: GO:0031480 myosin X complex ! No parse for: GO:0031481 myosin XI complex ! No parse for: GO:0031482 myosin XII complex ! No parse for: GO:0031483 myosin XIII complex ! No parse for: GO:0031484 myosin XIV complex ! No parse for: GO:0031485 myosin XV complex ! No parse for: GO:0031486 myosin XVI complex ! No parse for: GO:0031487 myosin XVII complex ! No parse for: GO:0031488 myosin XVIII complex ! No parse for: GO:0031499 TRAMP complex ! No parse for: GO:0031500 Tea1 cell-end complex ! No parse for: GO:0031501 mannosyltransferase complex ! No parse for: GO:0031502 dolichyl-phosphate-mannose-protein mannosyltransferase complex ! No parse for: GO:0031510 SUMO activating enzyme complex ! No parse for: GO:0031511 Mis6-Sim4 complex ! No parse for: GO:0031512 motile primary cilium ! No parse for: GO:0031513 nonmotile primary cilium ! No parse for: GO:0031514 motile secondary cilium ! No parse for: GO:0031515 tRNA (m1A) methyltransferase complex ! No parse for: GO:0031518 CBF3 complex ! No parse for: GO:0031519 PcG protein complex ! No parse for: GO:0031520 plasma membrane of cell tip ! No parse for: GO:0031521 spitzenkorper ! No parse for: GO:0031522 plasma membrane Sec complex ! No parse for: GO:0031523 Myb complex ! parse: GO:0031526 using "brush border membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005903]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding the brush border." ! PROPOSED: membrane that OBO_REL:part_of brush border [cdef(GO:0016020, [OBO_REL:part_of=GO:0005903])] [Term] id: GO:0031526 ! brush border membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005903 ! brush border ! parse: GO:0031527 using "filopodium membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030175]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding a filopodium." ! PROPOSED: membrane that OBO_REL:part_of filopodium [cdef(GO:0016020, [OBO_REL:part_of=GO:0030175])] [Term] id: GO:0031527 ! filopodium membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0030175 ! filopodium synonym: "microspike membrane" EXACT [OBOL:automatic] ! parse: GO:0031528 using "microvillus membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005902]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding a microvillus." ! PROPOSED: membrane that OBO_REL:part_of microvillus [cdef(GO:0016020, [OBO_REL:part_of=GO:0005902])] [Term] id: GO:0031528 ! microvillus membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005902 ! microvillus ! No parse for: GO:0031533 mRNA capping enzyme complex ! parse: GO:0031560 using "cellular bud neck polarisome" => cdef(GO:0000133, [OBO_REL:part_of=GO:0005935]) [-2] ! no existing xp def ! def: "Protein complex that has a role in determining cell polarity, found at the neck of a fungal bud before and during cytokinesis." ! PROPOSED: polarisome that OBO_REL:part_of cellular bud neck [cdef(GO:0000133, [OBO_REL:part_of=GO:0005935])] [Term] id: GO:0031560 ! cellular bud neck polarisome intersection_of: GO:0000133 ! polarisome intersection_of: OBO_REL:part_of GO:0005935 ! cellular bud neck ! parse: GO:0031561 using "cellular bud tip polarisome" => cdef(GO:0000133, [OBO_REL:part_of=GO:0005934]) [-2] ! no existing xp def ! def: "Protein complex that has a role in determining cell polarity, found at the tip of a growing fungal bud." ! PROPOSED: polarisome that OBO_REL:part_of cellular bud tip [cdef(GO:0000133, [OBO_REL:part_of=GO:0005934])] [Term] id: GO:0031561 ! cellular bud tip polarisome intersection_of: GO:0000133 ! polarisome intersection_of: OBO_REL:part_of GO:0005934 ! cellular bud tip ! parse: GO:0031562 using "hyphal tip polarisome" => cdef(GO:0000133, [OBO_REL:part_of=GO:0001411]) [-2] ! no existing xp def ! def: "Protein complex that has a role in determining cell polarity, found at the tip of a growing fungal hypha." ! PROPOSED: polarisome that OBO_REL:part_of hyphal tip [cdef(GO:0000133, [OBO_REL:part_of=GO:0001411])] [Term] id: GO:0031562 ! hyphal tip polarisome intersection_of: GO:0000133 ! polarisome intersection_of: OBO_REL:part_of GO:0001411 ! hyphal tip ! parse: GO:0031563 using "mating projection tip polarisome" => cdef(GO:0000133, [OBO_REL:part_of=GO:0043332]) [-2] ! no existing xp def ! def: "Protein complex that has a role in determining cell polarity, found at the tip of the mating projection in unicellular fungi exposed to mating pheromone." ! PROPOSED: polarisome that OBO_REL:part_of mating projection tip [cdef(GO:0000133, [OBO_REL:part_of=GO:0043332])] [Term] id: GO:0031563 ! mating projection tip polarisome intersection_of: GO:0000133 ! polarisome intersection_of: OBO_REL:part_of GO:0043332 ! mating projection tip ! No parse for: GO:0031588 AMP-activated protein kinase complex ! No parse for: GO:0031592 centrosomal corona ! No parse for: GO:0031594 neuromuscular junction ! No parse for: GO:0031595 nuclear proteasome complex ! No parse for: GO:0031596 ER proteasome complex ! No parse for: GO:0031597 cytosolic proteasome complex (sensu Eukaryota) ! No parse for: GO:0031598 nuclear proteasome regulatory particle ! No parse for: GO:0031599 ER proteasome regulatory particle ! No parse for: GO:0031600 cytosolic proteasome regulatory particle (sensu Eukaryota) ! No parse for: GO:0031601 nuclear proteasome core complex ! No parse for: GO:0031602 ER proteasome core complex ! No parse for: GO:0031603 cytosolic proteasome core complex (sensu Eukaryota) ! No parse for: GO:0031604 nuclear proteasome core complex, alpha-subunit complex ! No parse for: GO:0031605 ER proteasome core complex, alpha-subunit complex ! No parse for: GO:0031606 cytosolic proteasome core complex, alpha-subunit complex (sensu Eukaryota) ! No parse for: GO:0031607 nuclear proteasome core complex, beta-subunit complex ! No parse for: GO:0031608 ER proteasome core complex, beta-subunit complex ! No parse for: GO:0031609 cytosolic proteasome core complex, beta-subunit complex (sensu Eukaryota) ! No parse for: GO:0031610 nuclear proteasome regulatory particle, base subcomplex ! No parse for: GO:0031611 ER proteasome regulatory particle, base subcomplex ! No parse for: GO:0031612 cytosolic proteasome regulatory particle, base subcomplex (sensu Eukaryota) ! No parse for: GO:0031613 nuclear proteasome regulatory particle, lid subcomplex ! No parse for: GO:0031614 ER proteasome regulatory particle, lid subcomplex ! No parse for: GO:0031615 cytosolic proteasome regulatory particle, lid subcomplex (sensu Eukaryota) ! parse: GO:0031616 using "spindle pole centrosome" => cdef(GO:0005813, [OBO_REL:part_of=GO:0000922]) [-2] ! no existing xp def ! def: "A centrosome from which one pole of a mitotic or meiotic spindle is organized." ! PROPOSED: centrosome that OBO_REL:part_of spindle pole [cdef(GO:0005813, [OBO_REL:part_of=GO:0000922])] [Term] id: GO:0031616 ! spindle pole centrosome intersection_of: GO:0005813 ! centrosome intersection_of: OBO_REL:part_of GO:0000922 ! spindle pole ! No parse for: GO:0031617 NMS complex ! No parse for: GO:0031618 nuclear centric heterochromatin ! No parse for: GO:0031633 xanthophore ! No parse for: GO:0031672 A band ! No parse for: GO:0031673 H zone ! No parse for: GO:0031674 I band ! No parse for: GO:0031675 NADH dehydrogenase complex (plastoquinone) ! parse: GO:0031676 using "plasma membrane thylakoid membrane" => cdef(GO:0042651, [OBO_REL:part_of=GO:0005886]) [-2] ! parse: GO:0031676 using "plasma membrane thylakoid membrane" => cdef(cdef(GO:0016020, [OBO_REL:part_of=GO:0009579]), [OBO_REL:part_of=GO:0005886]) [-3] ! parse: GO:0031676 using "plasma membrane-derived thylakoid membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0030075]) [-2] ! no existing xp def ! def: "The pigmented membrane of a plasma membrane-derived thylakoid." ! PROPOSED: thylakoid membrane that OBO_REL:part_of plasma membrane [cdef(GO:0042651, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0031676 ! plasma membrane-derived thylakoid membrane intersection_of: GO:0042651 ! thylakoid membrane intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane thylakoid membrane" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane thylakoid membrane" EXACT [OBOL:automatic] synonym: "plasmalemma thylakoid membrane" EXACT [OBOL:automatic] ! parse: GO:0031677 using "plastid NADH dehydrogenase complex (plastoquinone)" => cdef(GO:0031675, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "A NADH dehydrogenase complex (plastoquinone) complex found in a plastid." ! PROPOSED: NADH dehydrogenase complex (plastoquinone) that OBO_REL:part_of plastid [cdef(GO:0031675, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0031677 ! plastid NADH dehydrogenase complex (plastoquinone) intersection_of: GO:0031675 ! NADH dehydrogenase complex (plastoquinone) intersection_of: OBO_REL:part_of GO:0009536 ! plastid synonym: "plastid NADH : plastoquinone reductase complex" EXACT [OBOL:automatic] ! No parse for: GO:0031678 NADH dehydrogenase complex (plastoquinone) (sensu Cyanobacteria) ! No parse for: GO:0031680 G-protein beta/gamma-subunit complex ! No parse for: GO:0031838 haptoglobin-hemoglobin complex ! No parse for: GO:0031897 Tic complex ! parse: GO:0031898 using "chromoplast envelope" => cdef(GO:0031975, [OBO_REL:part_of=GO:0009509]) [-2] ! no existing xp def ! def: "The double lipid bilayer enclosing the chromoplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space." ! PROPOSED: envelope that OBO_REL:part_of chromoplast [cdef(GO:0031975, [OBO_REL:part_of=GO:0009509])] [Term] id: GO:0031898 ! chromoplast envelope intersection_of: GO:0031975 ! envelope intersection_of: OBO_REL:part_of GO:0009509 ! chromoplast ! No parse for: GO:0031899 chromoplast inner membrane ! parse: GO:0031900 using "chromoplast outer membrane" => cdef(GO:0019867, [OBO_REL:part_of=GO:0009509]) [-2] ! no existing xp def ! def: "The outer, i.e. cytoplasm-facing, lipid bilayer of the chromoplast envelope." ! PROPOSED: outer membrane that OBO_REL:part_of chromoplast [cdef(GO:0019867, [OBO_REL:part_of=GO:0009509])] [Term] id: GO:0031900 ! chromoplast outer membrane intersection_of: GO:0019867 ! outer membrane intersection_of: OBO_REL:part_of GO:0009509 ! chromoplast ! parse: GO:0031901 using "early endosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005769]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding an early endosome." ! PROPOSED: membrane that OBO_REL:part_of early endosome [cdef(GO:0016020, [OBO_REL:part_of=GO:0005769])] [Term] id: GO:0031901 ! early endosome membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005769 ! early endosome ! parse: GO:0031902 using "late endosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005770]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a late endosome." ! PROPOSED: membrane that OBO_REL:part_of late endosome [cdef(GO:0016020, [OBO_REL:part_of=GO:0005770])] [Term] id: GO:0031902 ! late endosome membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005770 ! late endosome synonym: "prevacuolar compartment membrane" EXACT [OBOL:automatic] ! parse: GO:0031903 using "microbody membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042579]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a microbody." ! PROPOSED: membrane that OBO_REL:part_of microbody [cdef(GO:0016020, [OBO_REL:part_of=GO:0042579])] [Term] id: GO:0031903 ! microbody membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042579 ! microbody ! No parse for: GO:0031904 endosome lumen ! No parse for: GO:0031905 early endosome lumen ! No parse for: GO:0031906 late endosome lumen ! No parse for: GO:0031907 microbody lumen ! No parse for: GO:0031908 glyoxysomal lumen ! No parse for: GO:0031909 peroxisomal lumen ! No parse for: GO:0031910 cytostome ! No parse for: GO:0031911 cytoproct ! No parse for: GO:0031912 oral apparatus ! parse: GO:0031913 using "contractile vacuole pore" => cdef(GO:0046930, [OBO_REL:part_of=GO:0000331]) [-2] ! no existing xp def ! def: "Stable structure that regulates the flow of liquid between the contractile vacuole and the surrounding medium." ! PROPOSED: pore complex that OBO_REL:part_of contractile vacuole [cdef(GO:0046930, [OBO_REL:part_of=GO:0000331])] [Term] id: GO:0031913 ! contractile vacuole pore intersection_of: GO:0046930 ! pore complex intersection_of: OBO_REL:part_of GO:0000331 ! contractile vacuole synonym: "contractile vacuole pore complex" EXACT [OBOL:automatic] ! No parse for: GO:0031931 TORC 1 complex ! No parse for: GO:0031932 TORC 2 complex ! No parse for: GO:0031933 telomeric heterochromatin ! No parse for: GO:0031934 mating-type region heterochromatin ! No parse for: GO:0031941 filamentous actin ! No parse for: GO:0031942 i-AAA complex ! No parse for: GO:0031965 nuclear membrane ! No parse for: GO:0031966 mitochondrial membrane ! parse: GO:0031967 using "organelle envelope" => cdef(GO:0031975, [OBO_REL:part_of=GO:0043226]) [-2] ! no existing xp def ! def: "A double membrane structure enclosing an organelle, including two lipid bilayers and the region between them. In some cases, an organelle envelope may have more than two membranes." ! PROPOSED: envelope that OBO_REL:part_of organelle [cdef(GO:0031975, [OBO_REL:part_of=GO:0043226])] [Term] id: GO:0031967 ! organelle envelope intersection_of: GO:0031975 ! envelope intersection_of: OBO_REL:part_of GO:0043226 ! organelle ! parse: GO:0031968 using "organelle outer membrane" => cdef(GO:0019867, [OBO_REL:part_of=GO:0043226]) [-2] ! no existing xp def ! def: "The outer, i.e. cytoplasm-facing, lipid bilayer of an organelle envelope." ! PROPOSED: outer membrane that OBO_REL:part_of organelle [cdef(GO:0019867, [OBO_REL:part_of=GO:0043226])] [Term] id: GO:0031968 ! organelle outer membrane intersection_of: GO:0019867 ! outer membrane intersection_of: OBO_REL:part_of GO:0043226 ! organelle ! parse: GO:0031969 using "chloroplast membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope." ! PROPOSED: membrane that OBO_REL:part_of chloroplast [cdef(GO:0016020, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0031969 ! chloroplast membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0031970 organelle envelope lumen ! No parse for: GO:0031972 chloroplast intermembrane space ! No parse for: GO:0031973 chromoplast intermembrane space ! No parse for: GO:0031974 membrane-enclosed lumen ! No parse for: GO:0031975 envelope ! parse: GO:0031976 using "plastid thylakoid" => cdef(GO:0009579, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "Any thylakoid within a plastid." ! PROPOSED: thylakoid that OBO_REL:part_of plastid [cdef(GO:0009579, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0031976 ! plastid thylakoid intersection_of: GO:0009579 ! thylakoid intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0031977 thylakoid lumen ! parse: GO:0031978 using "plastid thylakoid lumen" => cdef(GO:0031977, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "The volume enclosed by a plastid thylakoid membrane." ! PROPOSED: thylakoid lumen that OBO_REL:part_of plastid [cdef(GO:0031977, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0031978 ! plastid thylakoid lumen intersection_of: GO:0031977 ! thylakoid lumen intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! parse: GO:0031979 using "plasma membrane thylakoid lumen" => cdef(GO:0031977, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "The volume enclosed by a plasma membrane-derived thylakoid." ! PROPOSED: thylakoid lumen that OBO_REL:part_of plasma membrane [cdef(GO:0031977, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0031979 ! plasma membrane-derived thylakoid lumen intersection_of: GO:0031977 ! thylakoid lumen intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane thylakoid lumen" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane thylakoid lumen" EXACT [OBOL:automatic] synonym: "plasmalemma thylakoid lumen" EXACT [OBOL:automatic] ! No parse for: GO:0031980 mitochondrial lumen ! No parse for: GO:0031981 nuclear lumen ! No parse for: GO:0031982 vesicle ! No parse for: GO:0031983 vesicle lumen ! No parse for: GO:0031984 organelle subcompartment ! No parse for: GO:0031985 Golgi cisterna ! No parse for: GO:0031986 proteinoplast ! No parse for: GO:0031988 membrane-bound vesicle ! parse: GO:0032002 using "interleukin-28 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-2 8, cell)]) [-16] ! no existing xp def ! def: "A protein complex that binds interleukin-28 and interleukin-29. Composed of two subunits, IL-28R alpha and IL-10R beta." ! PROPOSED: receptor complex that binds_to anon(interleukin-2 8, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-2 8, cell)])] [Term] id: GO:0032002 ! interleukin-28 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_2_8 synonym: "interleukin-2 8 receptor complex" EXACT [OBOL:automatic] ! No parse for: GO:0032009 early phagosome ! No parse for: GO:0032010 phagolysosome ! No parse for: GO:0032019 mitochondrial cloud ! No parse for: GO:0032021 NELF complex ! No parse for: GO:0032039 integrator complex ! No parse for: GO:0032040 small subunit processome ! No parse for: GO:0032044 DSIF complex ! No parse for: GO:0032045 guanyl-nucleotide exchange factor complex ! No parse for: GO:0032046 micropexophagy-specific membrane apparatus ! No parse for: GO:0032047 mitosome ! No parse for: GO:0032059 bleb ! No parse for: GO:0032068 Type IV site-specific deoxyribonuclease complex ! No parse for: GO:0032116 cohesin loading complex ! No parse for: GO:0032117 horsetail-astral microtubule array ! No parse for: GO:0032123 deep fiber ! No parse for: GO:0032126 eisosome ! parse: GO:0032127 using "dense core granule membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031045]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a dense core granule." ! PROPOSED: membrane that OBO_REL:part_of dense core granule [cdef(GO:0016020, [OBO_REL:part_of=GO:0031045])] [Term] id: GO:0032127 ! dense core granule membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0031045 ! dense core granule ! No parse for: GO:0032133 chromosome passenger complex ! No parse for: GO:0032144 4-aminobutyrate transaminase complex ! No parse for: GO:0032151 mitotic septin complex ! No parse for: GO:0032152 meiotic septin complex ! No parse for: GO:0032153 cell division site ! No parse for: GO:0032154 cleavage furrow ! parse: GO:0032155 using "cell division plane part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0032153]) [-2] ! parse: GO:0032155 using "cell division site part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0032153]) [-2] ! no existing xp def ! def: "Any constituent part of the cell division plane, the eventual plane of cell division in a dividing cell." ! PROPOSED: cellular_component that OBO_REL:part_of cell division site [cdef(GO:0005575, [OBO_REL:part_of=GO:0032153])] [Term] id: GO:0032155 ! cell division site part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0032153 ! cell division site synonym: "cell division plane cellular component" EXACT [OBOL:automatic] synonym: "cell division site cellular component" EXACT [OBOL:automatic] ! No parse for: GO:0032156 septin cytoskeleton ! parse: GO:0032157 using "prospore contractile ring" => cdef(GO:0005826, [OBO_REL:part_of=GO:0042764]) [-2] ! no existing xp def ! def: "A contractile ring, i.e. a cytoskeletal structure composed of actin filaments and myosin, that forms beneath the plasma membrane of the prospore envelope in meiotic cells in preparation for completing cytokinesis." ! PROPOSED: contractile ring that OBO_REL:part_of prospore [cdef(GO:0005826, [OBO_REL:part_of=GO:0042764])] [Term] id: GO:0032157 ! prospore contractile ring intersection_of: GO:0005826 ! contractile ring intersection_of: OBO_REL:part_of GO:0042764 ! prospore synonym: "forespore (sensu Fungi) CAR" EXACT [OBOL:automatic] synonym: "forespore (sensu Fungi) contractile actomyosin ring" EXACT [OBOL:automatic] synonym: "forespore (sensu Fungi) contractile ring" EXACT [OBOL:automatic] synonym: "prospore CAR" EXACT [OBOL:automatic] synonym: "prospore contractile actomyosin ring" EXACT [OBOL:automatic] ! No parse for: GO:0032158 septin band ! No parse for: GO:0032159 septin cap ! No parse for: GO:0032160 septin filament array ! No parse for: GO:0032161 cleavage apparatus septin structure ! parse: GO:0032162 using "mating projection septin band" => cdef(GO:0032158, [OBO_REL:part_of=GO:0005937]) [-2] ! no existing xp def ! def: "A septin band, i.e. a diffuse ring composed of a series of septin bars running parallel to the long axis of the cell, located at the neck of a shmoo (mating projection)." ! PROPOSED: septin band that OBO_REL:part_of mating projection [cdef(GO:0032158, [OBO_REL:part_of=GO:0005937])] [Term] id: GO:0032162 ! mating projection septin band intersection_of: GO:0032158 ! septin band intersection_of: OBO_REL:part_of GO:0005937 ! mating projection ! No parse for: GO:0032163 hyphal septin band ! No parse for: GO:0032164 hyphal septin cap ! parse: GO:0032165 using "prospore septin filament array" => cdef(GO:0032160, [OBO_REL:part_of=GO:0042764]) [-2] ! no existing xp def ! def: "Arrays of septin filaments, or bars, found in a series of filamentous structures; observed in the prospore membrane during spore formation." ! PROPOSED: septin filament array that OBO_REL:part_of prospore [cdef(GO:0032160, [OBO_REL:part_of=GO:0042764])] [Term] id: GO:0032165 ! prospore septin filament array intersection_of: GO:0032160 ! septin filament array intersection_of: OBO_REL:part_of GO:0042764 ! prospore synonym: "forespore (sensu Fungi) septin filament array" EXACT [OBOL:automatic] ! No parse for: GO:0032166 chlamydospore septin filament array ! No parse for: GO:0032168 hyphal septin ring ! parse: GO:0032169 using "prospore septin ring" => cdef(GO:0005940, [OBO_REL:part_of=GO:0042764]) [-2] ! no existing xp def ! def: "A tight ring-shaped structure that forms in the division plane at the site of cytokinesis in a prospore; composed of septins as well as septin-associated proteins." ! PROPOSED: septin ring that OBO_REL:part_of prospore [cdef(GO:0005940, [OBO_REL:part_of=GO:0042764])] [Term] id: GO:0032169 ! prospore septin ring intersection_of: GO:0005940 ! septin ring intersection_of: OBO_REL:part_of GO:0042764 ! prospore synonym: "forespore (sensu Fungi) septin ring" EXACT [OBOL:automatic] ! No parse for: GO:0032170 pseudohyphal septin ring ! parse: GO:0032171 using "germ tube septin cap" => cdef(GO:0032159, [OBO_REL:part_of=GO:0032179]) [-2] ! no existing xp def ! def: "A faint structure formed of septins found at the leading edge of growth in germ tubes of fungal cells growing filamentiously. This cap of septins colocalizes with a region of the plasma membrane that is rich in ergosterol." ! PROPOSED: septin cap that OBO_REL:part_of germ tube [cdef(GO:0032159, [OBO_REL:part_of=GO:0032179])] [Term] id: GO:0032171 ! germ tube septin cap intersection_of: GO:0032159 ! septin cap intersection_of: OBO_REL:part_of GO:0032179 ! germ tube ! parse: GO:0032172 using "germ tube septin ring" => cdef(GO:0005940, [OBO_REL:part_of=GO:0032179]) [-2] ! no existing xp def ! def: "A tight ring-shaped structure that forms in the division plane within the germ tube of filamentous fungi at sites where a septum will form; composed of septins as well as septin-associated proteins." ! PROPOSED: septin ring that OBO_REL:part_of germ tube [cdef(GO:0005940, [OBO_REL:part_of=GO:0032179])] [Term] id: GO:0032172 ! germ tube septin ring intersection_of: GO:0005940 ! septin ring intersection_of: OBO_REL:part_of GO:0032179 ! germ tube ! No parse for: GO:0032173 septin collar ! parse: GO:0032174 using "cellular bud neck septin collar" => cdef(GO:0032173, [OBO_REL:part_of=GO:0005935]) [-2] ! no existing xp def ! def: "A tubular structure with flared ends, shaped like an hourglass and composed of highly ordered arrays of septin filaments, that forms at the bud neck of a dividing cell. In S. cerevisiae, this structure is located at the bud neck throughout most of the cell cycle and the septins are fixed within the structure, not exchanging with soluble septins. This septin structure acts as a scaffold for other proteins that function at the bud neck." ! PROPOSED: septin collar that OBO_REL:part_of cellular bud neck [cdef(GO:0032173, [OBO_REL:part_of=GO:0005935])] [Term] id: GO:0032174 ! cellular bud neck septin collar intersection_of: GO:0032173 ! septin collar intersection_of: OBO_REL:part_of GO:0005935 ! cellular bud neck ! parse: GO:0032175 using "mating projection septin ring" => cdef(GO:0005940, [OBO_REL:part_of=GO:0005937]) [-2] ! no existing xp def ! def: "A septin ring, i.e. a ring-shaped structure composed of septins and septin-associated proteins, located at the neck of a shmoo (mating projection). The septin ring in the neck of a shmoo may act as a barrier to localize mating factors in the shmoo tip." ! PROPOSED: septin ring that OBO_REL:part_of mating projection [cdef(GO:0005940, [OBO_REL:part_of=GO:0005937])] [Term] id: GO:0032175 ! mating projection septin ring intersection_of: GO:0005940 ! septin ring intersection_of: OBO_REL:part_of GO:0005937 ! mating projection ! No parse for: GO:0032176 split septin rings ! parse: GO:0032177 using "cellular bud neck split septin rings" => cdef(GO:0032176, [OBO_REL:part_of=GO:0005935]) [-2] ! no existing xp def ! def: "Two separate septin rings that are formed from the septin collar at the time of cytokinesis in cells that divide by budding. These two rings are thought to delineate a special compartment in which factors involved in cytokinesis are concentrated." ! PROPOSED: split septin rings that OBO_REL:part_of cellular bud neck [cdef(GO:0032176, [OBO_REL:part_of=GO:0005935])] [Term] id: GO:0032177 ! cellular bud neck split septin rings intersection_of: GO:0032176 ! split septin rings intersection_of: OBO_REL:part_of GO:0005935 ! cellular bud neck ! No parse for: GO:0032178 medial membrane band ! No parse for: GO:0032179 germ tube ! No parse for: GO:0032195 post-lysosomal vacuole ! No parse for: GO:0032221 Clr6 histone deacetylase complex ! No parse for: GO:0032279 asymmetric synapse ! No parse for: GO:0032280 symmetric synapse ! parse: GO:0032281 using "AMPA-selective glutamate receptor complex" => cdef(GO:0043235, [binds_to=anon(AMPA-selective glutamate, cell)]) [-25] ! parse: GO:0032281 using "alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex" => cdef(GO:0043235, [binds_to=anon(alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate, cell)]) [-77] ! no existing xp def ! def: "An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. The AMPA receptors mediate fast synaptic transmission in the CNS and are composed of subunits GluR1-4, products from separate genes. These subunits have an extracellular N-terminus and an intracellular C-terminus." ! PROPOSED: receptor complex that binds_to anon(AMPA-selective glutamate, cell) [cdef(GO:0043235, [binds_to=anon(AMPA-selective glutamate, cell)])] [Term] id: GO:0032281 ! alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:AMPA_-_selective_glutamate ! parse: GO:0032282 using "plastid ACCase complex" => cdef(GO:0009317, [OBO_REL:part_of=GO:0009536]) [-2] ! parse: GO:0032282 using "plastid acetyl-CoA carboxylase complex" => cdef(GO:0009317, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "An acetyl-CoA carboxylase complex located in the stroma of a plastid." ! PROPOSED: acetyl-CoA carboxylase complex that OBO_REL:part_of plastid [cdef(GO:0009317, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0032282 ! plastid acetyl-CoA carboxylase complex intersection_of: GO:0009317 ! acetyl-CoA carboxylase complex intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! parse: GO:0032283 using "plastid acetate CoA-transferase complex" => cdef(GO:0009329, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "An acetate CoA-transferase complex located in the stroma of a plastid." ! PROPOSED: acetate CoA-transferase complex that OBO_REL:part_of plastid [cdef(GO:0009329, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0032283 ! plastid acetate CoA-transferase complex intersection_of: GO:0009329 ! acetate CoA-transferase complex intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! parse: GO:0032284 using "plastid biotin carboxylase complex" => cdef(GO:0009343, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "A biotin carboxylase complex located in the stroma of a plastid." ! PROPOSED: biotin carboxylase complex that OBO_REL:part_of plastid [cdef(GO:0009343, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0032284 ! plastid biotin carboxylase complex intersection_of: GO:0009343 ! biotin carboxylase complex intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0032299 ribonuclease H2 complex ! No parse for: GO:0032300 mismatch repair complex ! No parse for: GO:0032301 MutSalpha complex ! No parse for: GO:0032302 MutSbeta complex ! No parse for: GO:0032311 angiogenin-PRI complex ! No parse for: GO:0032389 MutLalpha complex ! No parse for: GO:0032390 MutLbeta complex ! No parse for: GO:0032391 photoreceptor connecting cilium ! No parse for: GO:0032398 MHC class Ib protein complex ! No parse for: GO:0032419 extrinsic to lysosome membrane ! No parse for: GO:0032420 stereocilium ! No parse for: GO:0032421 stereocilium bundle ! No parse for: GO:0032426 stereocilium bundle tip ! No parse for: GO:0032432 actin filament bundle ! No parse for: GO:0032433 filopodium tip ! No parse for: GO:0032437 cuticular plate ! No parse for: GO:0032444 activin responsive factor complex ! No parse for: GO:0032449 CBM complex ! No parse for: GO:0032473 external side of mitochondrial outer membrane ! No parse for: GO:0032476 decaprenyl diphosphate synthase complex ! No parse for: GO:0032477 homodimeric decaprenyl diphosphate synthase complex ! No parse for: GO:0032478 heterotetrameric decaprenyl diphosphate synthase complex ! No parse for: GO:0032766 NHE3/E3KARP/ACTN4 complex ! No parse for: GO:0032777 Piccolo NuA4 histone acetyltransferase complex ! No parse for: GO:0032783 ELL-EAF complex ! No parse for: GO:0032797 SMN complex ! No parse for: GO:0032798 Swi5-Sfr1 complex ! No parse for: GO:0032806 carboxy-terminal domain protein kinase complex ! No parse for: GO:0032807 DNA ligase IV complex ! parse: GO:0032809 using "cell body membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0043025]) [-2] ! parse: GO:0032809 using "cell soma membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0043025]) [-2] ! no existing xp def ! def: "The plasma membrane of a cell that bears surface projections such as axons, dendrites, cilia, or flagella, excluding the plasma membrane on cell projections." ! PROPOSED: membrane that OBO_REL:part_of cell soma [cdef(GO:0016020, [OBO_REL:part_of=GO:0043025])] [Term] id: GO:0032809 ! cell soma membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0043025 ! cell soma ! parse: GO:0032838 using "cell projection cytoplasm" => cdef(GO:0005737, [OBO_REL:part_of=GO:0042995]) [-2] ! no existing xp def ! def: "All of the contents of a cell projection, excluding the plasma membrane surrounding the projection." ! PROPOSED: cytoplasm that OBO_REL:part_of cell projection [cdef(GO:0005737, [OBO_REL:part_of=GO:0042995])] [Term] id: GO:0032838 ! cell projection cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: OBO_REL:part_of GO:0042995 ! cell projection ! parse: GO:0032839 using "dendrite cytoplasm" => cdef(GO:0005737, [OBO_REL:part_of=GO:0030425]) [-2] ! no existing xp def ! def: "All of the contents of a dendrite, excluding the surrounding plasma membrane." ! PROPOSED: cytoplasm that OBO_REL:part_of dendrite [cdef(GO:0005737, [OBO_REL:part_of=GO:0030425])] [Term] id: GO:0032839 ! dendrite cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: OBO_REL:part_of GO:0030425 ! dendrite ! No parse for: GO:0032842 cytochrome bc(1) complex ! No parse for: GO:0032865 Mdm10/Mdm12/Mmm1 complex ! No parse for: GO:0032921 sarcosine oxidase complex ! No parse for: GO:0032936 SREBP-SCAP complex ! No parse for: GO:0032937 SREBP-SCAP-Insig complex ! No parse for: GO:0032969 endosomal scaffold complex ! No parse for: GO:0032982 myosin filament ! parse: GO:0032983 using "kainate selective glutamate receptor complex" => cdef(GO:0043235, [binds_to=anon(kainate selective glutamate, cell)]) [-28] ! no existing xp def ! def: "An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluR5-7 and KA-1/2 subunits." ! PROPOSED: receptor complex that binds_to anon(kainate selective glutamate, cell) [cdef(GO:0043235, [binds_to=anon(kainate selective glutamate, cell)])] [Term] id: GO:0032983 ! kainate selective glutamate receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:kainate_selective_glutamate ! No parse for: GO:0032991 macromolecular complex ! No parse for: GO:0032992 protein-carbohydrate complex ! No parse for: GO:0032993 protein-DNA complex ! No parse for: GO:0032994 protein-lipid complex ! No parse for: GO:0032996 Bcl3-Bcl10 complex ! parse: GO:0032997 using "Fc receptor complex" => cdef(GO:0043235, [binds_to=anon(Fc, cell)]) [-3] ! no existing xp def ! def: "A protein complex composed of a subunit or subunits capable of binding the Fc portion of an immunoglobulin with additional signaling components. The complex functions as a receptor for immunoglobulin." ! PROPOSED: receptor complex that binds_to anon(Fc, cell) [cdef(GO:0043235, [binds_to=anon(Fc, cell)])] [Term] id: GO:0032997 ! Fc receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:Fc ! No parse for: GO:0032998 Fc-epsilon receptor I complex ! No parse for: GO:0032999 Fc-alpha receptor I complex ! No parse for: GO:0033000 Fc-gamma receptor I complex ! No parse for: GO:0033001 Fc-gamma receptor III complex ! No parse for: GO:0033009 nucleomorph ! No parse for: GO:0033010 paranodal junction ! No parse for: GO:0033011 perinuclear theca ! No parse for: GO:0033012 porosome ! parse: GO:0033016 using "rhoptry membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0020008]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a rhoptry." ! PROPOSED: membrane that OBO_REL:part_of rhoptry [cdef(GO:0016020, [OBO_REL:part_of=GO:0020008])] [Term] id: GO:0033016 ! rhoptry membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0020008 ! rhoptry ! parse: GO:0033017 using "sarcoplasmic reticulum membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0016529]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding the sarcoplasmic reticulum." ! PROPOSED: membrane that OBO_REL:part_of sarcoplasmic reticulum [cdef(GO:0016020, [OBO_REL:part_of=GO:0016529])] [Term] id: GO:0033017 ! sarcoplasmic reticulum membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0016529 ! sarcoplasmic reticulum ! No parse for: GO:0033018 sarcoplasmic reticulum lumen ! No parse for: GO:0033061 DNA recombinase mediator complex ! No parse for: GO:0033062 Rhp55-Rhp57 complex ! No parse for: GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex ! No parse for: GO:0033064 XRCC2-RAD51D complex ! No parse for: GO:0033065 Rad51C-XRCC3 complex ! No parse for: GO:0033066 Rad51B-Rad51C complex ! No parse for: GO:0033093 Weibel-Palade body ! No parse for: GO:0033095 aleurone grain ! parse: GO:0033096 using "amyloplast envelope" => cdef(GO:0031975, [OBO_REL:part_of=GO:0009501]) [-2] ! no existing xp def ! def: "The double lipid bilayer enclosing the amyloplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space." ! PROPOSED: envelope that OBO_REL:part_of amyloplast [cdef(GO:0031975, [OBO_REL:part_of=GO:0009501])] [Term] id: GO:0033096 ! amyloplast envelope intersection_of: GO:0031975 ! envelope intersection_of: OBO_REL:part_of GO:0009501 ! amyloplast ! parse: GO:0033097 using "amyloplast membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0009501]) [-2] ! no existing xp def ! def: "Either of the lipid bilayers that surround an amyloplast and form the amyloplast envelope." ! PROPOSED: membrane that OBO_REL:part_of amyloplast [cdef(GO:0016020, [OBO_REL:part_of=GO:0009501])] [Term] id: GO:0033097 ! amyloplast membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0009501 ! amyloplast ! No parse for: GO:0033098 amyloplast inner membrane ! No parse for: GO:0033099 attachment organelle ! No parse for: GO:0033100 NuA3 histone acetyltransferase complex ! parse: GO:0033101 using "cellular bud membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005933]) [-2] ! parse: GO:0033101 using "cellular bud plasma membrane" => cdef(GO:0005886, [OBO_REL:part_of=GO:0005933]) [-2] ! no existing xp def ! def: "The portion of the plasma membrane surrounding a cellular bud." ! PROPOSED: membrane that OBO_REL:part_of cellular bud [cdef(GO:0016020, [OBO_REL:part_of=GO:0005933])] [Term] id: GO:0033101 ! cellular bud membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005933 ! cellular bud ! parse: GO:0033102 using "acidocalcisome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0020022]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding an acidocalcisome." ! PROPOSED: membrane that OBO_REL:part_of acidocalcisome [cdef(GO:0016020, [OBO_REL:part_of=GO:0020022])] [Term] id: GO:0033102 ! acidocalcisome membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0020022 ! acidocalcisome ! No parse for: GO:0033104 type VI protein secretion system complex ! parse: GO:0033105 using "chlorosome envelope" => cdef(GO:0031975, [OBO_REL:part_of=GO:0046858]) [-2] ! parse: GO:0033105 using "chlorosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0046858]) [-2] ! no existing xp def ! def: "The membrane-like structure, composed of glycolipids and proteins, that encloses the pigments and other contents of the chlorosome." ! PROPOSED: envelope that OBO_REL:part_of chlorosome [cdef(GO:0031975, [OBO_REL:part_of=GO:0046858])] [Term] id: GO:0033105 ! chlorosome envelope intersection_of: GO:0031975 ! envelope intersection_of: OBO_REL:part_of GO:0046858 ! chlorosome ! parse: GO:0033106 using "cis Golgi network membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005801]) [-2] ! parse: GO:0033106 using "cis-Golgi network membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005801]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding any of the compartments that make up the cis-Golgi network." ! PROPOSED: membrane that OBO_REL:part_of cis-Golgi network [cdef(GO:0016020, [OBO_REL:part_of=GO:0005801])] [Term] id: GO:0033106 ! cis-Golgi network membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005801 ! cis-Golgi network ! No parse for: GO:0033107 CVT vesicle ! parse: GO:0033110 using "CVT vesicle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0033107]) [-2] ! no existing xp def ! def: "The double lipid bilayer surrounding a CVT vesicle." ! PROPOSED: membrane that OBO_REL:part_of CVT vesicle [cdef(GO:0016020, [OBO_REL:part_of=GO:0033107])] [Term] id: GO:0033110 ! CVT vesicle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0033107 ! CVT vesicle ! parse: GO:0033111 using "attachment organelle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0033099]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding an attachment organelle." ! PROPOSED: membrane that OBO_REL:part_of attachment organelle [cdef(GO:0016020, [OBO_REL:part_of=GO:0033099])] [Term] id: GO:0033111 ! attachment organelle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0033099 ! attachment organelle ! parse: GO:0033112 using "cyanelle envelope" => cdef(GO:0031975, [OBO_REL:part_of=GO:0009842]) [-2] ! no existing xp def ! def: "The double lipid bilayer enclosing the cyanelle and separating its contents from the rest of the cytoplasm; includes the intermembrane space." ! PROPOSED: envelope that OBO_REL:part_of cyanelle [cdef(GO:0031975, [OBO_REL:part_of=GO:0009842])] [Term] id: GO:0033112 ! cyanelle envelope intersection_of: GO:0031975 ! envelope intersection_of: OBO_REL:part_of GO:0009842 ! cyanelle ! parse: GO:0033113 using "cyanelle membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0009842]) [-2] ! no existing xp def ! def: "Either of the lipid bilayers that surround a cyanelle and form the cyanelle envelope." ! PROPOSED: membrane that OBO_REL:part_of cyanelle [cdef(GO:0016020, [OBO_REL:part_of=GO:0009842])] [Term] id: GO:0033113 ! cyanelle membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0009842 ! cyanelle ! parse: GO:0033114 using "cyanelle thylakoid lumen" => cdef(GO:0031977, [OBO_REL:part_of=GO:0009842]) [-2] ! no existing xp def ! def: "The volume enclosed by a cyanelle thylakoid membrane." ! PROPOSED: thylakoid lumen that OBO_REL:part_of cyanelle [cdef(GO:0031977, [OBO_REL:part_of=GO:0009842])] [Term] id: GO:0033114 ! cyanelle thylakoid lumen intersection_of: GO:0031977 ! thylakoid lumen intersection_of: OBO_REL:part_of GO:0009842 ! cyanelle ! parse: GO:0033115 using "cyanelle thylakoid membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0009843]) [-2] ! parse: GO:0033115 using "cyanelle thylakoid membrane" => cdef(GO:0042651, [OBO_REL:part_of=GO:0009842]) [-2] ! parse: GO:0033115 using "cyanelle thylakoid membrane" => cdef(cdef(GO:0016020, [OBO_REL:part_of=GO:0009579]), [OBO_REL:part_of=GO:0009842]) [-3] ! no existing xp def ! def: "The lipid bilayer membrane of any thylakoid within a cyanelle." ! PROPOSED: thylakoid membrane that OBO_REL:part_of cyanelle [cdef(GO:0042651, [OBO_REL:part_of=GO:0009842])] [Term] id: GO:0033115 ! cyanelle thylakoid membrane intersection_of: GO:0042651 ! thylakoid membrane intersection_of: OBO_REL:part_of GO:0009842 ! cyanelle ! parse: GO:0033116 using "ER-Golgi intermediate compartment membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0005793]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding any of the compartments of the ER-Golgi intermediate compartment system." ! PROPOSED: membrane that OBO_REL:part_of ER-Golgi intermediate compartment [cdef(GO:0016020, [OBO_REL:part_of=GO:0005793])] [Term] id: GO:0033116 ! ER-Golgi intermediate compartment membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0005793 ! ER-Golgi intermediate compartment synonym: "ERGIC membrane" EXACT [OBOL:automatic] synonym: "endoplasmic reticulum-Golgi intermediate compartment membrane" EXACT [OBOL:automatic] synonym: "pre-Golgi intermediate compartment membrane" EXACT [OBOL:automatic] ! No parse for: GO:0033117 esterosome ! parse: GO:0033118 using "esterosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0033117]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding an esterosome. This membrane has characteristics of rough endoplasmic reticulum (RER) membranes." ! PROPOSED: membrane that OBO_REL:part_of esterosome [cdef(GO:0016020, [OBO_REL:part_of=GO:0033117])] [Term] id: GO:0033118 ! esterosome membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0033117 ! esterosome ! No parse for: GO:0033150 cytoskeletal calyx ! parse: GO:0033162 using "melanosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042470]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a melanosome." ! PROPOSED: membrane that OBO_REL:part_of melanosome [cdef(GO:0016020, [OBO_REL:part_of=GO:0042470])] [Term] id: GO:0033162 ! melanosome membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042470 ! melanosome ! parse: GO:0033163 using "microneme membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0020009]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a microneme." ! PROPOSED: membrane that OBO_REL:part_of microneme [cdef(GO:0016020, [OBO_REL:part_of=GO:0020009])] [Term] id: GO:0033163 ! microneme membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0020009 ! microneme ! No parse for: GO:0033165 interphotoreceptor matrix ! No parse for: GO:0033166 hyaline layer ! No parse for: GO:0033167 ARC complex ! No parse for: GO:0033172 gas vesicle shell ! No parse for: GO:0033174 chloroplast proton-transporting ATP synthase complex, catalytic core CF(1) ! No parse for: GO:0033175 chloroplast proton-transporting ATP synthase complex, coupling factor CF(o) ! No parse for: GO:0033176 proton-transporting V-type ATPase complex ! No parse for: GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain ! No parse for: GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain ! No parse for: GO:0033179 proton-transporting V-type ATPase, V0 domain ! No parse for: GO:0033180 proton-transporting V-type ATPase, V1 domain ! parse: GO:0033181 using "plasma membrane proton-transporting V-type ATPase complex" => cdef(GO:0033176, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A proton-transporting two-sector ATPase complex found in the plasma membrane." ! PROPOSED: proton-transporting V-type ATPase complex that OBO_REL:part_of plasma membrane [cdef(GO:0033176, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0033181 ! plasma membrane proton-transporting V-type ATPase complex intersection_of: GO:0033176 ! proton-transporting V-type ATPase complex intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane hydrogen-translocating V-type ATPase complex" EXACT [OBOL:automatic] synonym: "cell membrane proton-transporting V-type ATPase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane hydrogen-translocating V-type ATPase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting V-type ATPase complex" EXACT [OBOL:automatic] synonym: "plasma membrane hydrogen-translocating V-type ATPase complex" EXACT [OBOL:automatic] synonym: "plasmalemma hydrogen-translocating V-type ATPase complex" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting V-type ATPase complex" EXACT [OBOL:automatic] ! No parse for: GO:0033185 dolichol-phosphate-mannose synthase complex ! No parse for: GO:0033186 CAF-1 complex ! No parse for: GO:0033193 Lsd1/2 complex ! No parse for: GO:0033202 DNA helicase complex ! No parse for: GO:0033203 DNA helicase A complex ! No parse for: GO:0033254 vacuolar transporter chaperone complex ! No parse for: GO:0033255 SAS acetyltransferase complex ! No parse for: GO:0033256 I-kappaB/NF-kappaB complex ! No parse for: GO:0033257 Bcl3/NF-kappaB2 complex ! No parse for: GO:0033263 CORVET complex ! parse: GO:0033267 using "axon part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0030424]) [-2] ! no existing xp def ! def: "A cell projection part that is part of an axon." ! PROPOSED: cellular_component that OBO_REL:part_of axon [cdef(GO:0005575, [OBO_REL:part_of=GO:0030424])] [Term] id: GO:0033267 ! axon part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0030424 ! axon synonym: "axon cellular component" EXACT [OBOL:automatic] ! No parse for: GO:0033268 node of Ranvier ! No parse for: GO:0033269 internode region of axon ! No parse for: GO:0033270 paranode region of axon ! No parse for: GO:0033276 transcription factor TFTC complex ! No parse for: GO:0035003 subapical complex ! No parse for: GO:0035012 polytene chromosome, telomeric region ! No parse for: GO:0035030 phosphoinositide 3-kinase complex, class IA ! No parse for: GO:0035031 phosphoinositide 3-kinase complex, class IB ! No parse for: GO:0035032 phosphoinositide 3-kinase complex, class III ! No parse for: GO:0035059 RCAF complex ! No parse for: GO:0035060 brahma complex ! No parse for: GO:0035061 interchromatin granule ! No parse for: GO:0035062 omega speckle ! No parse for: GO:0035068 micro-ribonucleoprotein complex ! parse: GO:0035085 using "cilium axoneme" => cdef(GO:0005930, [OBO_REL:part_of=GO:0005929]) [-2] ! no existing xp def ! def: "The bundle of microtubules and associated proteins that forms the core of cilia in eukaryotic cells and is responsible for their movements." ! PROPOSED: axoneme that OBO_REL:part_of cilium [cdef(GO:0005930, [OBO_REL:part_of=GO:0005929])] [Term] id: GO:0035085 ! cilium axoneme intersection_of: GO:0005930 ! axoneme intersection_of: OBO_REL:part_of GO:0005929 ! cilium ! No parse for: GO:0035086 flagellar axoneme ! No parse for: GO:0035097 histone methyltransferase complex ! No parse for: GO:0035098 ESC/E(Z) complex ! No parse for: GO:0035101 FACT complex ! No parse for: GO:0035102 PRC1 complex ! No parse for: GO:0035145 exon-exon junction complex ! No parse for: GO:0035182 germline ring canal outer rim ! No parse for: GO:0035183 germline ring canal inner rim ! No parse for: GO:0035189 Rb-E2F complex ! No parse for: GO:0035230 cytoneme ! No parse for: GO:0035253 ciliary rootlet ! No parse for: GO:0035267 NuA4 histone acetyltransferase complex ! No parse for: GO:0035301 Hedgehog signaling complex ! parse: GO:0042022 using "interleukin-12 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-1 2, cell)]) [-16] ! no existing xp def ! def: "Complex that binds interleukin-12; comprises an alpha and a beta subunit." ! PROPOSED: receptor complex that binds_to anon(interleukin-1 2, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-1 2, cell)])] [Term] id: GO:0042022 ! interleukin-12 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_1_2 synonym: "interleukin-1 2 receptor complex" EXACT [OBOL:automatic] ! parse: GO:0042025 using "host cell nucleus" => cdef(GO:0005634, [OBO_REL:part_of=GO:0043657]) [-2] ! no existing xp def ! def: "The nucleus of a host cell." ! PROPOSED: nucleus that OBO_REL:part_of host cell [cdef(GO:0005634, [OBO_REL:part_of=GO:0043657])] [Term] id: GO:0042025 ! host cell nucleus intersection_of: GO:0005634 ! nucleus intersection_of: OBO_REL:part_of GO:0043657 ! host cell ! parse: GO:0042101 using "T cell receptor complex" => cdef(GO:0043235, [binds_to=CL:0000084]) [-2] ! parse: GO:0042101 using "T lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=CL:0000084]) [-2] ! parse: GO:0042101 using "T-lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=CL:0000084]) [-2] ! no existing xp def ! def: "A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains." ! PROPOSED: receptor complex that binds_to T cell [cdef(GO:0043235, [binds_to=CL:0000084])] [Term] id: GO:0042101 ! T cell receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to CL:0000084 ! T cell synonym: "T-cell receptor complex" EXACT [OBOL:automatic] ! parse: GO:0042105 using "alpha-beta T cell receptor complex" => cdef(GO:0043235, [binds_to=CL:0000789]) [-2] ! parse: GO:0042105 using "alpha-beta T lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=CL:0000789]) [-2] ! parse: GO:0042105 using "alpha-beta T-cell receptor complex" => cdef(GO:0043235, [binds_to=CL:0000789]) [-2] ! parse: GO:0042105 using "alpha-beta T-lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=CL:0000789]) [-2] ! no existing xp def ! def: "A T cell receptor complex in which the TCR heterodimer comprises alpha and beta chains, associated with the CD3 complex; recognizes a complex consisting of an antigen-derived peptide bound to a class I or class II MHC protein." ! PROPOSED: receptor complex that binds_to alpha-beta T cell [cdef(GO:0043235, [binds_to=CL:0000789])] [Term] id: GO:0042105 ! alpha-beta T cell receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to CL:0000789 ! alpha-beta T cell ! parse: GO:0042106 using "gamma-delta T cell receptor complex" => cdef(GO:0043235, [binds_to=CL:0000798]) [-2] ! parse: GO:0042106 using "gamma-delta T lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=CL:0000798]) [-2] ! parse: GO:0042106 using "gamma-delta T-cell receptor complex" => cdef(GO:0043235, [binds_to=CL:0000798]) [-2] ! parse: GO:0042106 using "gamma-delta T-lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=CL:0000798]) [-2] ! no existing xp def ! def: "A T cell receptor complex in which the TCR heterodimer comprises gamma and delta chains, associated with the CD3 complex; recognizes antigen directly, without a requirement for processing and presentation by an MHC protein." ! PROPOSED: receptor complex that binds_to gamma-delta T cell [cdef(GO:0043235, [binds_to=CL:0000798])] [Term] id: GO:0042106 ! gamma-delta T cell receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to CL:0000798 ! gamma-delta T cell ! No parse for: GO:0042151 nematocyst ! parse: GO:0042170 using "plastid membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "Either of the lipid bilayers that surround a plastid and form the plastid envelope." ! PROPOSED: membrane that OBO_REL:part_of plastid [cdef(GO:0016020, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0042170 ! plastid membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! No parse for: GO:0042175 nuclear envelope-endoplasmic reticulum network ! No parse for: GO:0042272 nuclear RNA export factor complex ! No parse for: GO:0042382 paraspeckles ! No parse for: GO:0042383 sarcolemma ! No parse for: GO:0042385 myosin III complex ! No parse for: GO:0042405 nuclear inclusion body ! No parse for: GO:0042406 extrinsic to endoplasmic reticulum membrane ! No parse for: GO:0042470 melanosome ! No parse for: GO:0042555 MCM complex ! No parse for: GO:0042563 importin alpha-subunit nuclear export complex ! No parse for: GO:0042564 NLS-dependent protein nuclear import complex ! No parse for: GO:0042565 RNA nuclear export complex ! No parse for: GO:0042566 hydrogenosome ! No parse for: GO:0042567 insulin-like growth factor ternary complex ! No parse for: GO:0042568 insulin-like growth factor binary complex ! No parse for: GO:0042571 immunoglobulin complex, circulating ! No parse for: GO:0042575 DNA polymerase complex ! No parse for: GO:0042579 microbody ! No parse for: GO:0042580 mannosome ! No parse for: GO:0042581 specific granule ! No parse for: GO:0042582 azurophil granule ! No parse for: GO:0042583 chromaffin granule ! parse: GO:0042584 using "chromaffin granule membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042583]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a chromaffin granule, a specialized secretory vesicle found in the cells of adrenal glands and various other organs, which is concerned with the synthesis, storage, metabolism, and secretion of epinephrine and norepinephrine." ! PROPOSED: membrane that OBO_REL:part_of chromaffin granule [cdef(GO:0016020, [OBO_REL:part_of=GO:0042583])] [Term] id: GO:0042584 ! chromaffin granule membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042583 ! chromaffin granule ! No parse for: GO:0042585 germinal vesicle ! No parse for: GO:0042587 glycogen granule ! No parse for: GO:0042588 zymogen granule ! parse: GO:0042589 using "zymogen granule membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042588]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a zymogen granule." ! PROPOSED: membrane that OBO_REL:part_of zymogen granule [cdef(GO:0016020, [OBO_REL:part_of=GO:0042588])] [Term] id: GO:0042589 ! zymogen granule membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042588 ! zymogen granule ! No parse for: GO:0042597 periplasmic space ! No parse for: GO:0042598 vesicular fraction ! No parse for: GO:0042599 lamellar body ! No parse for: GO:0042600 chorion ! No parse for: GO:0042601 endospore-forming forespore ! No parse for: GO:0042603 capsule ! No parse for: GO:0042611 MHC protein complex ! No parse for: GO:0042612 MHC class I protein complex ! No parse for: GO:0042613 MHC class II protein complex ! parse: GO:0042622 using "photoreceptor outer segment membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0001750]) [-2] ! no existing xp def ! def: "The membrane surrounding the outer segment of a vertebrate photoreceptor." ! PROPOSED: membrane that OBO_REL:part_of photoreceptor outer segment [cdef(GO:0016020, [OBO_REL:part_of=GO:0001750])] [Term] id: GO:0042622 ! photoreceptor outer segment membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0001750 ! photoreceptor outer segment ! No parse for: GO:0042627 chylomicron ! No parse for: GO:0042629 mast cell granule ! No parse for: GO:0042641 actomyosin ! No parse for: GO:0042642 actomyosin, myosin complex part ! No parse for: GO:0042643 actomyosin, actin part ! parse: GO:0042644 using "chloroplast nucleoid" => cdef(GO:0009295, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "The region of a chloroplast to which the DNA is confined." ! PROPOSED: nucleoid that OBO_REL:part_of chloroplast [cdef(GO:0009295, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0042644 ! chloroplast nucleoid intersection_of: GO:0009295 ! nucleoid intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0042645 mitochondrial nucleoid ! parse: GO:0042646 using "plastid nucleoid" => cdef(GO:0009295, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "The region of a plastid to which the DNA is confined." ! PROPOSED: nucleoid that OBO_REL:part_of plastid [cdef(GO:0009295, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0042646 ! plastid nucleoid intersection_of: GO:0009295 ! nucleoid intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! parse: GO:0042647 using "proplastid nucleoid" => cdef(GO:0009295, [OBO_REL:part_of=GO:0009537]) [-2] ! no existing xp def ! def: "The region of a proplastid to which the DNA is confined." ! PROPOSED: nucleoid that OBO_REL:part_of proplastid [cdef(GO:0009295, [OBO_REL:part_of=GO:0009537])] [Term] id: GO:0042647 ! proplastid nucleoid intersection_of: GO:0009295 ! nucleoid intersection_of: OBO_REL:part_of GO:0009537 ! proplastid ! parse: GO:0042648 using "chloroplast chromosome" => cdef(GO:0005694, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "A circular DNA molecule containing chloroplast encoded genes." ! PROPOSED: chromosome that OBO_REL:part_of chloroplast [cdef(GO:0005694, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0042648 ! chloroplast chromosome intersection_of: GO:0005694 ! chromosome intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0042649 prothylakoid ! parse: GO:0042650 using "prothylakoid membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042649]) [-2] ! no existing xp def ! def: "The membrane of prothylakoids, underdeveloped thylakoids found in etioplasts, lacking competent photosynthetic membranes." ! PROPOSED: membrane that OBO_REL:part_of prothylakoid [cdef(GO:0016020, [OBO_REL:part_of=GO:0042649])] [Term] id: GO:0042650 ! prothylakoid membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042649 ! prothylakoid ! parse: GO:0042651 using "thylakoid membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0009579]) [-2] ! no existing xp def ! def: "The pigmented membrane of any thylakoid." ! PROPOSED: membrane that OBO_REL:part_of thylakoid [cdef(GO:0016020, [OBO_REL:part_of=GO:0009579])] [Term] id: GO:0042651 ! thylakoid membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0009579 ! thylakoid ! No parse for: GO:0042652 mitochondrial respiratory chain complex I, peripheral segment ! No parse for: GO:0042653 mitochondrial respiratory chain complex I, membrane segment ! No parse for: GO:0042709 succinate-CoA ligase complex ! No parse for: GO:0042716 chromatophore ! parse: GO:0042717 using "chromatophore membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042716]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a chromatophore, a pigment-bearing vesicle found in certain photosynthetic bacteria and cyanobacteria." ! PROPOSED: membrane that OBO_REL:part_of chromatophore [cdef(GO:0016020, [OBO_REL:part_of=GO:0042716])] [Term] id: GO:0042717 ! chromatophore membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042716 ! chromatophore synonym: "chromatophore vesicle membrane" EXACT [OBOL:automatic] ! No parse for: GO:0042718 yolk granule ! No parse for: GO:0042719 mitochondrial intermembrane space protein transporter complex ! No parse for: GO:0042720 mitochondrial inner membrane peptidase complex ! No parse for: GO:0042721 mitochondrial inner membrane protein insertion complex ! No parse for: GO:0042729 DASH complex ! No parse for: GO:0042734 presynaptic membrane ! No parse for: GO:0042735 protein body ! No parse for: GO:0042757 giant axon ! No parse for: GO:0042763 immature spore ! No parse for: GO:0042764 prospore ! No parse for: GO:0042765 GPI-anchor transamidase complex ! No parse for: GO:0042788 polysomal ribosome ! No parse for: GO:0042807 central vacuole ! No parse for: GO:0042824 MHC class I peptide loading complex ! parse: GO:0042825 using "transporter associated with antigen presentation" => cdef(GO:0019882, [OBO_REL:mediated_by=anon(transporter associated with, cell)]) [-28] ! no existing xp def ! def: "A heterodimer composed of the subunits TAP1 and TAP2 (transporter associated with antigen presentation). Functions in the transport of antigenic peptides from the cytosol to the lumen of the endoplasmic reticulum." ! PROPOSED: antigen processing and presentation that OBO_REL:mediated_by anon(transporter associated with, cell) [cdef(GO:0019882, [OBO_REL:mediated_by=anon(transporter associated with, cell)])] [Term] id: GO:0042825 ! TAP complex intersection_of: GO:0019882 ! antigen processing and presentation intersection_of: OBO_REL:mediated_by cell:transporter_associated_with synonym: "antigen presentation mediated by transporter associated with antigen presentation" EXACT [OBOL:automatic] synonym: "antigen presentation mediated by transporter associated with antigen processing" EXACT [OBOL:automatic] synonym: "antigen processing mediated by transporter associated with antigen presentation" EXACT [OBOL:automatic] synonym: "antigen processing mediated by transporter associated with antigen processing" EXACT [OBOL:automatic] synonym: "transporter associated with antigen processing" EXACT [OBOL:automatic] synonym: "transporter associated with antigen processing and presentation" EXACT [OBOL:automatic] synonym: "transporter associated with mediated antigen presentation" EXACT [OBOL:automatic] synonym: "transporter associated with mediated antigen processing" EXACT [OBOL:automatic] synonym: "transporter associated with mediated antigen processing and presentation" EXACT [OBOL:automatic] ! No parse for: GO:0042827 platelet dense granule ! No parse for: GO:0042995 cell projection ! No parse for: GO:0043005 neuron projection ! No parse for: GO:0043020 NADPH oxidase complex ! No parse for: GO:0043025 cell soma ! No parse for: GO:0043033 isoamylase complex ! No parse for: GO:0043034 costamere ! No parse for: GO:0043036 starch grain ! No parse for: GO:0043073 germ cell nucleus ! No parse for: GO:0043076 megasporocyte nucleus ! No parse for: GO:0043078 polar nucleus ! No parse for: GO:0043079 antipodal cell nucleus ! No parse for: GO:0043082 megagametophyte egg cell nucleus ! No parse for: GO:0043083 synaptic cleft ! No parse for: GO:0043159 acrosomal matrix ! No parse for: GO:0043160 acrosomal lumen ! No parse for: GO:0043186 P granule ! No parse for: GO:0043187 cell septum surface ! No parse for: GO:0043188 cell septum edging ! No parse for: GO:0043189 H4/H2A histone acetyltransferase complex ! No parse for: GO:0043190 ATP-binding cassette (ABC) transporter complex ! No parse for: GO:0043194 initial segment ! No parse for: GO:0043195 terminal button ! No parse for: GO:0043196 varicosity ! No parse for: GO:0043197 dendritic spine ! No parse for: GO:0043198 dendritic shaft ! No parse for: GO:0043202 lysosomal lumen ! No parse for: GO:0043203 axon hillock ! No parse for: GO:0043204 perikaryon ! No parse for: GO:0043205 fibril ! No parse for: GO:0043209 myelin sheath ! No parse for: GO:0043218 compact myelin ! No parse for: GO:0043219 lateral loop ! No parse for: GO:0043220 Schmidt-Lanterman cleft ! No parse for: GO:0043222 SMC/kleisin ring complex ! No parse for: GO:0043223 cytoplasmic SCF ubiquitin ligase complex ! No parse for: GO:0043224 nuclear SCF ubiquitin ligase complex ! No parse for: GO:0043226 organelle ! No parse for: GO:0043227 membrane-bound organelle ! No parse for: GO:0043228 non-membrane-bound organelle ! parse: GO:0043229 using "intracellular organelle" => cdef(GO:0043226, [OBO_REL:part_of=GO:0005622]) [-2] ! parse: GO:0043229 using "intracellular organelle" => cdef(GO:0043226, [contained_by=CL:0000000]) [-2] ! parse: GO:0043229 using "intracellular organelle" => cdef(GO:0043226, [contained_by=GO:0005623]) [-2] ! no existing xp def ! def: "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." ! PROPOSED: organelle that contained_by cell [cdef(GO:0043226, [contained_by=GO:0005623])] [Term] id: GO:0043229 ! intracellular organelle intersection_of: GO:0043226 ! organelle intersection_of: contained_by GO:0005623 ! cell ! parse: GO:0043230 using "extracellular organelle" => cdef(GO:0043226, [OBO_REL:part_of=GO:0005576]) [-2] ! no existing xp def ! def: "Organized structure of distinctive morphology and function, occurring outside the cell. Includes, for example, extracellular membrane vesicles (EMVs) and the cellulosomes of anaerobic bacteria and fungi." ! PROPOSED: organelle that OBO_REL:part_of extracellular region [cdef(GO:0043226, [OBO_REL:part_of=GO:0005576])] [Term] id: GO:0043230 ! extracellular organelle intersection_of: GO:0043226 ! organelle intersection_of: OBO_REL:part_of GO:0005576 ! extracellular region synonym: "extracellular region organelle" EXACT [OBOL:automatic] ! parse: GO:0043231 using "intracellular membrane-bound organelle" => cdef(GO:0043227, [OBO_REL:part_of=GO:0005622]) [-2] ! parse: GO:0043231 using "intracellular membrane-bound organelle" => cdef(GO:0043227, [contained_by=CL:0000000]) [-2] ! parse: GO:0043231 using "intracellular membrane-bound organelle" => cdef(GO:0043227, [contained_by=GO:0005623]) [-2] ! no existing xp def ! def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." ! PROPOSED: membrane-bound organelle that contained_by cell [cdef(GO:0043227, [contained_by=GO:0005623])] [Term] id: GO:0043231 ! intracellular membrane-bound organelle intersection_of: GO:0043227 ! membrane-bound organelle intersection_of: contained_by GO:0005623 ! cell ! parse: GO:0043232 using "intracellular non-membrane-bound organelle" => cdef(GO:0043228, [OBO_REL:part_of=GO:0005622]) [-2] ! parse: GO:0043232 using "intracellular non-membrane-bound organelle" => cdef(GO:0043228, [contained_by=CL:0000000]) [-2] ! parse: GO:0043232 using "intracellular non-membrane-bound organelle" => cdef(GO:0043228, [contained_by=GO:0005623]) [-2] ! no existing xp def ! def: "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes." ! PROPOSED: non-membrane-bound organelle that contained_by cell [cdef(GO:0043228, [contained_by=GO:0005623])] [Term] id: GO:0043232 ! intracellular non-membrane-bound organelle intersection_of: GO:0043228 ! non-membrane-bound organelle intersection_of: contained_by GO:0005623 ! cell ! No parse for: GO:0043233 organelle lumen ! No parse for: GO:0043234 protein complex ! No parse for: GO:0043235 receptor complex ! No parse for: GO:0043240 Fanconi anaemia nuclear complex ! No parse for: GO:0043245 extraorganismal space ! No parse for: GO:0043246 megasome ! parse: GO:0043253 using "chloroplast ribosome" => cdef(GO:0005840, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "A ribosome contained within a chloroplast." ! PROPOSED: ribosome that OBO_REL:part_of chloroplast [cdef(GO:0005840, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0043253 ! chloroplast ribosome intersection_of: GO:0005840 ! ribosome intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast ! No parse for: GO:0043256 laminin complex ! No parse for: GO:0043257 laminin-8 complex ! No parse for: GO:0043258 laminin-9 complex ! No parse for: GO:0043259 laminin-10 complex ! No parse for: GO:0043260 laminin-11 complex ! No parse for: GO:0043261 laminin-12 complex ! No parse for: GO:0043263 cellulosome ! parse: GO:0043264 using "extracellular non-membrane-bound organelle" => cdef(GO:0043228, [OBO_REL:part_of=GO:0005576]) [-2] ! no existing xp def ! def: "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring outside the cell." ! PROPOSED: non-membrane-bound organelle that OBO_REL:part_of extracellular region [cdef(GO:0043228, [OBO_REL:part_of=GO:0005576])] [Term] id: GO:0043264 ! extracellular non-membrane-bound organelle intersection_of: GO:0043228 ! non-membrane-bound organelle intersection_of: OBO_REL:part_of GO:0005576 ! extracellular region synonym: "extracellular region non-membrane-bound organelle" EXACT [OBOL:automatic] ! No parse for: GO:0043265 ectoplasm ! No parse for: GO:0043291 RAVE complex ! No parse for: GO:0043292 contractile fiber ! No parse for: GO:0043293 apoptosome ! No parse for: GO:0043294 mitochondrial glutamate synthase complex (NADH) ! No parse for: GO:0043296 apical junction complex ! No parse for: GO:0043332 mating projection tip ! parse: GO:0043384 using "pre-T cell receptor complex" => cdef(GO:0042101, [binds_to=anon(pre-, cell)]) [-5] ! parse: GO:0043384 using "pre-T cell receptor complex" => cdef(GO:0043235, [binds_to=anon(pre-T cell, cell)]) [-11] ! parse: GO:0043384 using "pre-T lymphocyte receptor complex" => cdef(GO:0042101, [binds_to=anon(pre-, cell)]) [-5] ! parse: GO:0043384 using "pre-T lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=anon(pre-T lymphocyte, cell)]) [-17] ! parse: GO:0043384 using "pre-T-cell receptor complex" => cdef(GO:0043235, [binds_to=anon(pre-T-cell, cell)]) [-11] ! parse: GO:0043384 using "pre-T-lymphocyte receptor complex" => cdef(GO:0042101, [binds_to=anon(pre-, cell)]) [-5] ! parse: GO:0043384 using "pre-T-lymphocyte receptor complex" => cdef(GO:0043235, [binds_to=anon(pre-T-lymphocyte, cell)]) [-17] ! no existing xp def ! def: "A receptor complex found on immature T cells consisting of a T cell receptor beta chain and the pre-TCR-alpha chain, along with additional signaling components including CD3 family members and additional signaling proteins." ! PROPOSED: T cell receptor complex that binds_to anon(pre-, cell) [cdef(GO:0042101, [binds_to=anon(pre-, cell)])] [Term] id: GO:0043384 ! pre-T cell receptor complex intersection_of: GO:0042101 ! T cell receptor complex intersection_of: binds_to cell:pre_- synonym: "pre-TCR" EXACT [OBOL:automatic] ! No parse for: GO:0043493 phage terminase complex ! No parse for: GO:0043494 Rik1-E3 ubiquitin ligase complex ! No parse for: GO:0043505 centromere-specific nucleosome ! No parse for: GO:0043509 activin A complex ! No parse for: GO:0043510 activin B complex ! No parse for: GO:0043511 inhibin complex ! No parse for: GO:0043512 inhibin A complex ! No parse for: GO:0043513 inhibin B complex ! No parse for: GO:0043514 interleukin-12 complex ! No parse for: GO:0043527 tRNA methyltransferase complex ! No parse for: GO:0043528 tRNA (m2G10) methyltransferase complex ! No parse for: GO:0043529 GET complex ! No parse for: GO:0043540 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex ! No parse for: GO:0043541 UDP-N-acetylglucosamine transferase complex ! No parse for: GO:0043564 Ku70:Ku80 complex ! No parse for: GO:0043590 bacterial nucleoid ! No parse for: GO:0043591 endospore external encapsulating structure ! No parse for: GO:0043592 exosporium ! No parse for: GO:0043593 endospore coat ! No parse for: GO:0043594 outer endospore membrane ! No parse for: GO:0043595 endospore cortex ! No parse for: GO:0043596 nuclear replication fork ! No parse for: GO:0043597 cytoplasmic replication fork ! No parse for: GO:0043598 cytoplasmic DNA replication factor C complex ! No parse for: GO:0043599 nuclear DNA replication factor C complex ! No parse for: GO:0043600 cytoplasmic replisome ! No parse for: GO:0043601 nuclear replisome ! No parse for: GO:0043614 multi-eIF complex ! No parse for: GO:0043625 delta DNA polymerase complex ! No parse for: GO:0043626 PCNA complex ! parse: GO:0043655 using "host extracellular space" => cdef(GO:0005615, [OBO_REL:part_of=GO:0018995]) [-2] ! no existing xp def ! def: "The space within a host but external to the plasma membrane of host cells, e.g. within host bloodstream." ! PROPOSED: extracellular space that OBO_REL:part_of host [cdef(GO:0005615, [OBO_REL:part_of=GO:0018995])] [Term] id: GO:0043655 ! extracellular space of host intersection_of: GO:0005615 ! extracellular space intersection_of: OBO_REL:part_of GO:0018995 ! host synonym: "host organism extracellular space" EXACT [OBOL:automatic] ! parse: GO:0043656 using "host intracellular" => cdef(GO:0005622, [OBO_REL:part_of=GO:0018995]) [-2] ! no existing xp def ! def: "That space within the plasma membrane of a host cell." ! PROPOSED: intracellular that OBO_REL:part_of host [cdef(GO:0005622, [OBO_REL:part_of=GO:0018995])] [Term] id: GO:0043656 ! intracellular region of host intersection_of: GO:0005622 ! intracellular intersection_of: OBO_REL:part_of GO:0018995 ! host synonym: "host organism intracellular" EXACT [OBOL:automatic] synonym: "host organism protoplasm" EXACT [OBOL:automatic] synonym: "host protoplasm" EXACT [OBOL:automatic] ! No parse for: GO:0043657 host cell ! parse: GO:0043658 using "host symbiosome" => cdef(GO:0043659, [OBO_REL:part_of=GO:0018995]) [-2] ! no existing xp def ! def: "A double-enveloped cell compartment, composed of the endosymbiont with its plasmalemma (as inner envelope) and an outer envelope (the perisymbiontic membrane) derived from the host cell." ! PROPOSED: symbiosome that OBO_REL:part_of host [cdef(GO:0043659, [OBO_REL:part_of=GO:0018995])] [Term] id: GO:0043658 ! host symbiosome intersection_of: GO:0043659 ! symbiosome intersection_of: OBO_REL:part_of GO:0018995 ! host synonym: "host organism symbiosome" EXACT [OBOL:automatic] ! No parse for: GO:0043659 symbiosome ! No parse for: GO:0043660 bacteroid-containing symbiosome ! No parse for: GO:0043661 peribacteroid membrane ! No parse for: GO:0043662 peribacteroid fluid ! parse: GO:0043663 using "host bacteroid-containing symbiosome" => cdef(GO:0043660, [OBO_REL:part_of=GO:0018995]) [-2] ! no existing xp def ! def: "A symbiosome containing any of various structurally modified bacteria, such as those occurring on the root nodules of leguminous plants, of a host cell." ! PROPOSED: bacteroid-containing symbiosome that OBO_REL:part_of host [cdef(GO:0043660, [OBO_REL:part_of=GO:0018995])] [Term] id: GO:0043663 ! host bacteroid-containing symbiosome intersection_of: GO:0043660 ! bacteroid-containing symbiosome intersection_of: OBO_REL:part_of GO:0018995 ! host synonym: "host organism bacteroid-containing symbiosome" EXACT [OBOL:automatic] ! parse: GO:0043664 using "host peribacteroid membrane" => cdef(GO:0043661, [OBO_REL:part_of=GO:0018995]) [-2] ! no existing xp def ! def: "A host-derived membrane that surrounds one or more bacteroids (such as nitrogen-fixing bacteroids within legume root nodule cells)." ! PROPOSED: peribacteroid membrane that OBO_REL:part_of host [cdef(GO:0043661, [OBO_REL:part_of=GO:0018995])] [Term] id: GO:0043664 ! host peribacteroid membrane intersection_of: GO:0043661 ! peribacteroid membrane intersection_of: OBO_REL:part_of GO:0018995 ! host synonym: "host organism peribacteroid membrane" EXACT [OBOL:automatic] ! parse: GO:0043665 using "host peribacteroid fluid" => cdef(GO:0043662, [OBO_REL:part_of=GO:0018995]) [-2] ! no existing xp def ! def: "The soluble material inside the peribacteroid membrane, but outside of the bacteroid, within a bacteroid-containing symbiosome of a host cell." ! PROPOSED: peribacteroid fluid that OBO_REL:part_of host [cdef(GO:0043662, [OBO_REL:part_of=GO:0018995])] [Term] id: GO:0043665 ! host peribacteroid fluid intersection_of: GO:0043662 ! peribacteroid fluid intersection_of: OBO_REL:part_of GO:0018995 ! host synonym: "host organism peribacteroid fluid" EXACT [OBOL:automatic] ! No parse for: GO:0043667 pollen wall ! No parse for: GO:0043668 exine ! No parse for: GO:0043669 ectexine ! No parse for: GO:0043670 foot layer ! No parse for: GO:0043671 endexine ! No parse for: GO:0043672 nexine ! No parse for: GO:0043673 sexine ! No parse for: GO:0043674 columella ! No parse for: GO:0043675 sculpture element ! No parse for: GO:0043676 tectum ! No parse for: GO:0043677 germination pore ! No parse for: GO:0043678 intine ! No parse for: GO:0043679 nerve terminal ! No parse for: GO:0043680 filiform apparatus ! No parse for: GO:0043684 type IV protein secretion system complex ! No parse for: GO:0043698 iridosome ! No parse for: GO:0043699 leucosome ! No parse for: GO:0043700 pterinosome ! No parse for: GO:0043701 cyanosome ! No parse for: GO:0043702 carotenoid vesicle ! No parse for: GO:0043769 telomere binding complex ! parse: GO:0044420 using "extracellular matrix part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0031012]) [-2] ! no existing xp def ! def: "Any constituent part of the extracellular matrix, the structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as often seen in plants)." ! PROPOSED: cellular_component that OBO_REL:part_of extracellular matrix [cdef(GO:0005575, [OBO_REL:part_of=GO:0031012])] [Term] id: GO:0044420 ! extracellular matrix part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0031012 ! extracellular matrix synonym: "extracellular matrix cellular component" EXACT [OBOL:automatic] ! parse: GO:0044421 using "extracellular region part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005576]) [-2] ! no existing xp def ! def: "Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite." ! PROPOSED: cellular_component that OBO_REL:part_of extracellular region [cdef(GO:0005575, [OBO_REL:part_of=GO:0005576])] [Term] id: GO:0044421 ! extracellular region part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005576 ! extracellular region synonym: "extracellular cellular component" EXACT [OBOL:automatic] synonym: "extracellular part" EXACT [OBOL:automatic] synonym: "extracellular region cellular component" EXACT [OBOL:automatic] ! parse: GO:0044422 using "organelle part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0043226]) [-2] ! no existing xp def ! def: "Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane." ! PROPOSED: cellular_component that OBO_REL:part_of organelle [cdef(GO:0005575, [OBO_REL:part_of=GO:0043226])] [Term] id: GO:0044422 ! organelle part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0043226 ! organelle synonym: "organelle cellular component" EXACT [OBOL:automatic] ! parse: GO:0044423 using "virion part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0019012]) [-2] ! no existing xp def ! def: "Any constituent part of a virion, a complete fully infectious extracellular virus particle." ! PROPOSED: cellular_component that OBO_REL:part_of virion [cdef(GO:0005575, [OBO_REL:part_of=GO:0019012])] [Term] id: GO:0044423 ! virion part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0019012 ! virion synonym: "complete virus particle cellular component" EXACT [OBOL:automatic] synonym: "complete virus particle part" EXACT [OBOL:automatic] synonym: "virion cellular component" EXACT [OBOL:automatic] ! parse: GO:0044424 using "intracellular part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005622]) [-2] ! no existing xp def ! def: "Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." ! PROPOSED: cellular_component that OBO_REL:part_of intracellular [cdef(GO:0005575, [OBO_REL:part_of=GO:0005622])] [Term] id: GO:0044424 ! intracellular part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005622 ! intracellular synonym: "intracellular cellular component" EXACT [OBOL:automatic] synonym: "protoplasm cellular component" EXACT [OBOL:automatic] synonym: "protoplasm part" EXACT [OBOL:automatic] ! parse: GO:0044425 using "membrane part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0016020]) [-2] ! no existing xp def ! def: "Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins." ! PROPOSED: cellular_component that OBO_REL:part_of membrane [cdef(GO:0005575, [OBO_REL:part_of=GO:0016020])] [Term] id: GO:0044425 ! membrane part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0016020 ! membrane synonym: "membrane cellular component" EXACT [OBOL:automatic] ! parse: GO:0044426 using "cell wall part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005618]) [-2] ! no existing xp def ! def: "Any constituent part of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis." ! PROPOSED: cellular_component that OBO_REL:part_of cell wall [cdef(GO:0005575, [OBO_REL:part_of=GO:0005618])] [Term] id: GO:0044426 ! cell wall part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005618 ! cell wall synonym: "cell wall cellular component" EXACT [OBOL:automatic] ! No parse for: GO:0044427 chromosomal part ! No parse for: GO:0044428 nuclear part ! No parse for: GO:0044429 mitochondrial part ! No parse for: GO:0044430 cytoskeletal part ! parse: GO:0044431 using "Golgi apparatus part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005794]) [-2] ! no existing xp def ! def: "Any constituent part of the Golgi apparatus, a compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack." ! PROPOSED: cellular_component that OBO_REL:part_of Golgi apparatus [cdef(GO:0005575, [OBO_REL:part_of=GO:0005794])] [Term] id: GO:0044431 ! Golgi apparatus part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005794 ! Golgi apparatus synonym: "Golgi apparatus cellular component" EXACT [OBOL:automatic] synonym: "Golgi cellular component" EXACT [OBOL:automatic] synonym: "Golgi complex cellular component" EXACT [OBOL:automatic] synonym: "Golgi complex part" EXACT [OBOL:automatic] synonym: "Golgi part" EXACT [OBOL:automatic] ! parse: GO:0044432 using "endoplasmic reticulum part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005783]) [-2] ! no existing xp def ! def: "Any constituent part of the endoplasmic reticulum, the irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae." ! PROPOSED: cellular_component that OBO_REL:part_of endoplasmic reticulum [cdef(GO:0005575, [OBO_REL:part_of=GO:0005783])] [Term] id: GO:0044432 ! endoplasmic reticulum part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005783 ! endoplasmic reticulum synonym: "ER cellular component" EXACT [OBOL:automatic] synonym: "ER part" EXACT [OBOL:automatic] synonym: "endoplasmic reticulum cellular component" EXACT [OBOL:automatic] ! parse: GO:0044433 using "cytoplasmic vesicle part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0031410]) [-2] ! no existing xp def ! def: "Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell." ! PROPOSED: cellular_component that OBO_REL:part_of cytoplasmic vesicle [cdef(GO:0005575, [OBO_REL:part_of=GO:0031410])] [Term] id: GO:0044433 ! cytoplasmic vesicle part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0031410 ! cytoplasmic vesicle synonym: "cytoplasmic vesicle cellular component" EXACT [OBOL:automatic] ! parse: GO:0044434 using "chloroplast part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "Any constituent part of a chloroplast, a chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma." ! PROPOSED: cellular_component that OBO_REL:part_of chloroplast [cdef(GO:0005575, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0044434 ! chloroplast part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast synonym: "chloroplast cellular component" EXACT [OBOL:automatic] ! parse: GO:0044435 using "plastid part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0009536]) [-2] ! no existing xp def ! def: "Any constituent part of a plastid, a member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid." ! PROPOSED: cellular_component that OBO_REL:part_of plastid [cdef(GO:0005575, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0044435 ! plastid part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0009536 ! plastid synonym: "plastid cellular component" EXACT [OBOL:automatic] ! parse: GO:0044436 using "thylakoid part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0009579]) [-2] ! no existing xp def ! def: "Any constituent part of a thylakoid, a sac-like vesicle that bears the photosynthetic pigments in photosynthetic organisms." ! PROPOSED: cellular_component that OBO_REL:part_of thylakoid [cdef(GO:0005575, [OBO_REL:part_of=GO:0009579])] [Term] id: GO:0044436 ! thylakoid part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0009579 ! thylakoid synonym: "thylakoid cellular component" EXACT [OBOL:automatic] ! No parse for: GO:0044437 vacuolar part ! parse: GO:0044438 using "microbody part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0042579]) [-2] ! no existing xp def ! def: "Any constituent part of a microbody, a cytoplasmic organelle, spherical or oval in shape, that is bounded by a single membrane and contains oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2)." ! PROPOSED: cellular_component that OBO_REL:part_of microbody [cdef(GO:0005575, [OBO_REL:part_of=GO:0042579])] [Term] id: GO:0044438 ! microbody part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0042579 ! microbody synonym: "microbody cellular component" EXACT [OBOL:automatic] ! No parse for: GO:0044439 peroxisomal part ! No parse for: GO:0044440 endosomal part ! parse: GO:0044441 using "cilium part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005929]) [-2] ! no existing xp def ! def: "Any constituent part of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole." ! PROPOSED: cellular_component that OBO_REL:part_of cilium [cdef(GO:0005575, [OBO_REL:part_of=GO:0005929])] [Term] id: GO:0044441 ! cilium part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005929 ! cilium synonym: "cilium cellular component" EXACT [OBOL:automatic] ! parse: GO:0044442 using "microtubule-based flagellum part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0009434]) [-2] ! no existing xp def ! def: "Any constituent part of a microtubule-based flagellum, a long, whiplike protrusion from the surface of a eukaryotic cell, whose undulations drive the cell through a liquid medium; similar in structure to a cilium. The flagellum is based on a 9+2 arrangement of microtubules." ! PROPOSED: cellular_component that OBO_REL:part_of microtubule-based flagellum [cdef(GO:0005575, [OBO_REL:part_of=GO:0009434])] [Term] id: GO:0044442 ! microtubule-based flagellum part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0009434 ! microtubule-based flagellum synonym: "flagellum (sensu Eukaryota) cellular component" EXACT [OBOL:automatic] synonym: "flagellum (sensu Eukaryota) part" EXACT [OBOL:automatic] synonym: "microtubule-based flagellum cellular component" EXACT [OBOL:automatic] ! No parse for: GO:0044443 fimbrial part ! No parse for: GO:0044444 cytoplasmic part ! No parse for: GO:0044445 cytosolic part ! parse: GO:0044446 using "intracellular organelle part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0043229]) [-2] ! parse: GO:0044446 using "intracellular organelle part" => cdef(GO:0044422, [OBO_REL:part_of=GO:0005622]) [-2] ! parse: GO:0044446 using "intracellular organelle part" => cdef(GO:0044422, [contained_by=CL:0000000]) [-2] ! parse: GO:0044446 using "intracellular organelle part" => cdef(GO:0044422, [contained_by=GO:0005623]) [-2] ! parse: GO:0044446 using "intracellular organelle part" => cdef(cdef(GO:0005575, [OBO_REL:part_of=GO:0043226]), [OBO_REL:part_of=GO:0005622]) [-3] ! parse: GO:0044446 using "intracellular organelle part" => cdef(cdef(GO:0005575, [OBO_REL:part_of=GO:0043226]), [contained_by=CL:0000000]) [-3] ! parse: GO:0044446 using "intracellular organelle part" => cdef(cdef(GO:0005575, [OBO_REL:part_of=GO:0043226]), [contained_by=GO:0005623]) [-3] ! no existing xp def ! def: "A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane." ! PROPOSED: organelle part that contained_by cell [cdef(GO:0044422, [contained_by=GO:0005623])] [Term] id: GO:0044446 ! intracellular organelle part intersection_of: GO:0044422 ! organelle part intersection_of: contained_by GO:0005623 ! cell ! parse: GO:0044447 using "axoneme part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005930]) [-2] ! no existing xp def ! def: "Any constituent part of an axoneme, the bundle of microtubules and associated proteins that forms the core of cilia and flagella in eukaryotic cells and is responsible for their movements." ! PROPOSED: cellular_component that OBO_REL:part_of axoneme [cdef(GO:0005575, [OBO_REL:part_of=GO:0005930])] [Term] id: GO:0044447 ! axoneme part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005930 ! axoneme synonym: "axoneme cellular component" EXACT [OBOL:automatic] ! parse: GO:0044448 using "cell cortex part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005938]) [-2] ! no existing xp def ! def: "Any constituent part of the cell cortex, the region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins." ! PROPOSED: cellular_component that OBO_REL:part_of cell cortex [cdef(GO:0005575, [OBO_REL:part_of=GO:0005938])] [Term] id: GO:0044448 ! cell cortex part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005938 ! cell cortex synonym: "cell cortex cellular component" EXACT [OBOL:automatic] ! parse: GO:0044449 using "contractile fiber part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0043292]) [-2] ! no existing xp def ! def: "Any constituent part of a contractile fiber, a fiber composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle." ! PROPOSED: cellular_component that OBO_REL:part_of contractile fiber [cdef(GO:0005575, [OBO_REL:part_of=GO:0043292])] [Term] id: GO:0044449 ! contractile fiber part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0043292 ! contractile fiber synonym: "contractile fiber cellular component" EXACT [OBOL:automatic] synonym: "contractile fibre cellular component" EXACT [OBOL:automatic] synonym: "contractile fibre part" EXACT [OBOL:automatic] ! parse: GO:0044450 using "microtubule organizing center part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005815]) [-2] ! no existing xp def ! def: "Any constituent part of a microtubule organizing center, a region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow." ! PROPOSED: cellular_component that OBO_REL:part_of microtubule organizing center [cdef(GO:0005575, [OBO_REL:part_of=GO:0005815])] [Term] id: GO:0044450 ! microtubule organizing center part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005815 ! microtubule organizing center synonym: "MTOC cellular component" EXACT [OBOL:automatic] synonym: "MTOC part" EXACT [OBOL:automatic] synonym: "microtubule organising centre cellular component" EXACT [OBOL:automatic] synonym: "microtubule organising centre part" EXACT [OBOL:automatic] synonym: "microtubule organizing center cellular component" EXACT [OBOL:automatic] ! parse: GO:0044451 using "nucleoplasm part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005654]) [-2] ! no existing xp def ! def: "Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus." ! PROPOSED: cellular_component that OBO_REL:part_of nucleoplasm [cdef(GO:0005575, [OBO_REL:part_of=GO:0005654])] [Term] id: GO:0044451 ! nucleoplasm part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005654 ! nucleoplasm synonym: "nucleoplasm cellular component" EXACT [OBOL:automatic] ! No parse for: GO:0044452 nucleolar part ! parse: GO:0044453 using "nuclear membrane part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0031965]) [-2] ! no existing xp def ! def: "Any constituent part of the nuclear membrane, the envelope that surrounds the nucleus of eukaryotic cells." ! PROPOSED: cellular_component that OBO_REL:part_of nuclear membrane [cdef(GO:0005575, [OBO_REL:part_of=GO:0031965])] [Term] id: GO:0044453 ! nuclear membrane part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0031965 ! nuclear membrane synonym: "nuclear membrane cellular component" EXACT [OBOL:automatic] ! parse: GO:0044454 using "nuclear chromosome part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0000228]) [-2] ! no existing xp def ! def: "Any constituent part of a nuclear chromosome, a chromosome found in the nucleus of a eukaryotic cell." ! PROPOSED: cellular_component that OBO_REL:part_of nuclear chromosome [cdef(GO:0005575, [OBO_REL:part_of=GO:0000228])] [Term] id: GO:0044454 ! nuclear chromosome part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0000228 ! nuclear chromosome synonym: "nuclear chromosome cellular component" EXACT [OBOL:automatic] ! parse: GO:0044455 using "mitochondrial membrane part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0031966]) [-2] ! no existing xp def ! def: "Any constituent part of the mitochondrial membrane, either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope." ! PROPOSED: cellular_component that OBO_REL:part_of mitochondrial membrane [cdef(GO:0005575, [OBO_REL:part_of=GO:0031966])] [Term] id: GO:0044455 ! mitochondrial membrane part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0031966 ! mitochondrial membrane synonym: "mitochondrial membrane cellular component" EXACT [OBOL:automatic] ! parse: GO:0044456 using "synapse part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0045202]) [-2] ! no existing xp def ! def: "The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell." ! PROPOSED: cellular_component that OBO_REL:part_of synapse [cdef(GO:0005575, [OBO_REL:part_of=GO:0045202])] [Term] id: GO:0044456 ! synapse part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0045202 ! synapse synonym: "synapse cellular component" EXACT [OBOL:automatic] synonym: "synaptic junction cellular component" EXACT [OBOL:automatic] synonym: "synaptic junction part" EXACT [OBOL:automatic] ! parse: GO:0044457 using "cell septum part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0030428]) [-2] ! no existing xp def ! def: "Any constituent part of a cell septum, a structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells." ! PROPOSED: cellular_component that OBO_REL:part_of cell septum [cdef(GO:0005575, [OBO_REL:part_of=GO:0030428])] [Term] id: GO:0044457 ! cell septum part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0030428 ! cell septum synonym: "cell septum cellular component" EXACT [OBOL:automatic] synonym: "cross wall cellular component" EXACT [OBOL:automatic] synonym: "cross wall part" EXACT [OBOL:automatic] ! parse: GO:0044459 using "plasma membrane part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." ! PROPOSED: cellular_component that OBO_REL:part_of plasma membrane [cdef(GO:0005575, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0044459 ! plasma membrane part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane cellular component" EXACT [OBOL:automatic] synonym: "cell membrane part" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane cellular component" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane part" EXACT [OBOL:automatic] synonym: "plasma membrane cellular component" EXACT [OBOL:automatic] synonym: "plasmalemma cellular component" EXACT [OBOL:automatic] synonym: "plasmalemma part" EXACT [OBOL:automatic] ! parse: GO:0044460 using "flagellum part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0019861]) [-2] ! no existing xp def ! def: "Any constituent part of a flagellum, a long whiplike or feathery structure borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium." ! PROPOSED: cellular_component that OBO_REL:part_of flagellum [cdef(GO:0005575, [OBO_REL:part_of=GO:0019861])] [Term] id: GO:0044460 ! flagellum part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0019861 ! flagellum synonym: "flagellum cellular component" EXACT [OBOL:automatic] ! parse: GO:0044461 using "flagellin-based flagellum part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0009288]) [-2] ! no existing xp def ! def: "Any constituent part of flagellum, a 20 nm diameter filament composed of subunits of flagellin driven passively at its base by a motor powered by the transmembrane proton potential." ! PROPOSED: cellular_component that OBO_REL:part_of flagellin-based flagellum [cdef(GO:0005575, [OBO_REL:part_of=GO:0009288])] [Term] id: GO:0044461 ! flagellin-based flagellum part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0009288 ! flagellin-based flagellum synonym: "flagellin-based flagellum cellular component" EXACT [OBOL:automatic] synonym: "flagellum (sensu Bacteria) cellular component" EXACT [OBOL:automatic] synonym: "flagellum (sensu Bacteria) part" EXACT [OBOL:automatic] ! parse: GO:0044462 using "external encapsulating structure part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0030312]) [-2] ! no existing xp def ! def: "Any constituent part of an external encapsulating structure, a structure that lies outside the plasma membrane and surrounds the entire cell." ! PROPOSED: cellular_component that OBO_REL:part_of external encapsulating structure [cdef(GO:0005575, [OBO_REL:part_of=GO:0030312])] [Term] id: GO:0044462 ! external encapsulating structure part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0030312 ! external encapsulating structure synonym: "external encapsulating structure cellular component" EXACT [OBOL:automatic] ! parse: GO:0044463 using "cell projection part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0042995]) [-2] ! no existing xp def ! def: "Any constituent part of a cell projection, a prolongation or process extending from a cell, e.g. a flagellum or axon." ! PROPOSED: cellular_component that OBO_REL:part_of cell projection [cdef(GO:0005575, [OBO_REL:part_of=GO:0042995])] [Term] id: GO:0044463 ! cell projection part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0042995 ! cell projection synonym: "cell projection cellular component" EXACT [OBOL:automatic] ! No parse for: GO:0044464 cell part ! No parse for: GO:0045009 chitosome ! No parse for: GO:0045025 mitochondrial degradosome ! parse: GO:0045092 using "interleukin-18 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-1 8, cell)]) [-16] ! no existing xp def ! def: "Complex that binds interleukin-18; comprises an alpha and a beta subunit." ! PROPOSED: receptor complex that binds_to anon(interleukin-1 8, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-1 8, cell)])] [Term] id: GO:0045092 ! interleukin-18 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_1_8 synonym: "interleukin-1 8 receptor complex" EXACT [OBOL:automatic] ! No parse for: GO:0045095 keratin filament ! No parse for: GO:0045098 type III intermediate filament ! parse: GO:0045111 using "intermediate filament cytoskeleton" => cdef(GO:0005856, [OBO_REL:part_of=GO:0005882]) [-2] ! no existing xp def ! def: "Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell." ! PROPOSED: cytoskeleton that OBO_REL:part_of intermediate filament [cdef(GO:0005856, [OBO_REL:part_of=GO:0005882])] [Term] id: GO:0045111 ! intermediate filament cytoskeleton intersection_of: GO:0005856 ! cytoskeleton intersection_of: OBO_REL:part_of GO:0005882 ! intermediate filament ! No parse for: GO:0045120 pronucleus ! No parse for: GO:0045121 lipid raft ! No parse for: GO:0045160 myosin I complex ! No parse for: GO:0045169 fusome ! No parse for: GO:0045170 spectrosome ! No parse for: GO:0045171 intercellular bridge ! No parse for: GO:0045172 germline ring canal ! No parse for: GO:0045177 apical part of cell ! No parse for: GO:0045178 basal part of cell ! No parse for: GO:0045179 apical cortex ! No parse for: GO:0045180 basal cortex ! No parse for: GO:0045202 synapse ! No parse for: GO:0045203 integral to cell outer membrane ! No parse for: GO:0045211 postsynaptic membrane ! No parse for: GO:0045239 tricarboxylic acid cycle enzyme complex ! No parse for: GO:0045240 alpha-ketoglutarate dehydrogenase complex ! No parse for: GO:0045241 cytosolic alpha-ketoglutarate dehydrogenase complex ! No parse for: GO:0045242 isocitrate dehydrogenase complex (NAD+) ! No parse for: GO:0045243 cytosolic isocitrate dehydrogenase complex (NAD+) ! No parse for: GO:0045244 succinate-CoA ligase complex (GDP-forming) ! No parse for: GO:0045246 cytosolic tricarboxylic acid cycle enzyme complex ! No parse for: GO:0045247 cytosolic electron transfer flavoprotein complex ! No parse for: GO:0045248 cytosolic oxoglutarate dehydrogenase complex ! parse: GO:0045249 using "cytosol pyruvate dehydrogenase (lipoamide) phosphatase complex" => cdef(GO:0045253, [OBO_REL:part_of=GO:0005829]) [-2] ! no existing xp def ! def: "A cytosolic complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex." ! PROPOSED: pyruvate dehydrogenase (lipoamide) phosphatase complex that OBO_REL:part_of cytosol [cdef(GO:0045253, [OBO_REL:part_of=GO:0005829])] [Term] id: GO:0045249 ! cytosol pyruvate dehydrogenase (lipoamide) phosphatase complex intersection_of: GO:0045253 ! pyruvate dehydrogenase (lipoamide) phosphatase complex intersection_of: OBO_REL:part_of GO:0005829 ! cytosol synonym: "cytosol pyruvate dehydrogenase (lipoamide) phosphatase complex" EXACT [OBOL:automatic] ! No parse for: GO:0045250 cytosolic pyruvate dehydrogenase complex ! No parse for: GO:0045251 electron transfer flavoprotein complex ! No parse for: GO:0045252 oxoglutarate dehydrogenase complex ! No parse for: GO:0045253 pyruvate dehydrogenase (lipoamide) phosphatase complex ! No parse for: GO:0045254 pyruvate dehydrogenase complex ! No parse for: GO:0045257 succinate dehydrogenase complex (ubiquinone) ! parse: GO:0045258 using "plasma membrane succinate dehydrogenase complex (ubiquinone)" => cdef(GO:0045257, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "The enzyme, located in the plasma membrane, that catalyzes the oxidation of succinate and ubiquinone to fumarate and ubiquinol; involved in aerobic respiration, repressed in anaerobic respiration." ! PROPOSED: succinate dehydrogenase complex (ubiquinone) that OBO_REL:part_of plasma membrane [cdef(GO:0045257, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045258 ! plasma membrane succinate dehydrogenase complex (ubiquinone) intersection_of: GO:0045257 ! succinate dehydrogenase complex (ubiquinone) intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane succinate dehydrogenase complex (ubiquinone)" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane succinate dehydrogenase complex (ubiquinone)" EXACT [OBOL:automatic] synonym: "plasmalemma succinate dehydrogenase complex (ubiquinone)" EXACT [OBOL:automatic] ! No parse for: GO:0045259 proton-transporting ATP synthase complex ! parse: GO:0045260 using "plasma membrane hydrogen-translocating F-type ATPase complex" => cdef(GO:0045259, [OBO_REL:part_of=GO:0005886]) [-2] ! parse: GO:0045260 using "plasma membrane proton-transporting ATP synthase complex" => cdef(GO:0045259, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A proton-transporting ATP synthase complex found in the plasma membrane." ! PROPOSED: proton-transporting ATP synthase complex that OBO_REL:part_of plasma membrane [cdef(GO:0045259, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045260 ! plasma membrane proton-transporting ATP synthase complex intersection_of: GO:0045259 ! proton-transporting ATP synthase complex intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane hydrogen-translocating F-type ATPase complex" EXACT [OBOL:automatic] synonym: "cell membrane hydrogen-transporting ATP synthase complex" EXACT [OBOL:automatic] synonym: "cell membrane proton-transporting ATP synthase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane hydrogen-translocating F-type ATPase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane hydrogen-transporting ATP synthase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting ATP synthase complex" EXACT [OBOL:automatic] synonym: "plasma membrane hydrogen-transporting ATP synthase complex" EXACT [OBOL:automatic] synonym: "plasmalemma hydrogen-translocating F-type ATPase complex" EXACT [OBOL:automatic] synonym: "plasmalemma hydrogen-transporting ATP synthase complex" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting ATP synthase complex" EXACT [OBOL:automatic] ! No parse for: GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) ! parse: GO:0045262 using "plasma membrane proton-transporting ATP synthase complex, catalytic core F(1)" => cdef(GO:0045261, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "The catalytic sector of the plasma membrane hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the plasma membrane when the entire ATP synthase is assembled." ! PROPOSED: proton-transporting ATP synthase complex, catalytic core F(1) that OBO_REL:part_of plasma membrane [cdef(GO:0045261, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045262 ! plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) intersection_of: GO:0045261 ! proton-transporting ATP synthase complex, catalytic core F(1) intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane hydrogen-transporting ATP synthase, F 1 sector" EXACT [OBOL:automatic] synonym: "cell membrane proton-transporting ATP synthase complex, catalytic core F (1)" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane hydrogen-transporting ATP synthase, F 1 sector" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting ATP synthase complex, catalytic core F (1)" EXACT [OBOL:automatic] synonym: "plasma membrane hydrogen-transporting ATP synthase, F 1 sector" EXACT [OBOL:automatic] synonym: "plasma membrane proton-transporting ATP synthase complex, catalytic core F (1)" EXACT [OBOL:automatic] synonym: "plasmalemma hydrogen-transporting ATP synthase, F 1 sector" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting ATP synthase complex, catalytic core F (1)" EXACT [OBOL:automatic] ! No parse for: GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) ! parse: GO:0045264 using "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" => cdef(GO:0045263, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "All non-F1 subunits of the plasma membrane hydrogen-transporting ATP synthase, including integral and peripheral plasma membrane proteins." ! PROPOSED: proton-transporting ATP synthase complex, coupling factor F(o) that OBO_REL:part_of plasma membrane [cdef(GO:0045263, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045264 ! plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) intersection_of: GO:0045263 ! proton-transporting ATP synthase complex, coupling factor F(o) intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane hydrogen-transporting ATP synthase, F 0 sector" EXACT [OBOL:automatic] synonym: "cell membrane proton-transporting ATP synthase complex, coupling factor F (0)" EXACT [OBOL:automatic] synonym: "cell membrane proton-transporting ATP synthase complex, coupling factor F (o)" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane hydrogen-transporting ATP synthase, F 0 sector" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting ATP synthase complex, coupling factor F (0)" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting ATP synthase complex, coupling factor F (o)" EXACT [OBOL:automatic] synonym: "plasma membrane hydrogen-transporting ATP synthase, F 0 sector" EXACT [OBOL:automatic] synonym: "plasma membrane proton-transporting ATP synthase complex, coupling factor F (0)" EXACT [OBOL:automatic] synonym: "plasma membrane proton-transporting ATP synthase complex, coupling factor F (o)" EXACT [OBOL:automatic] synonym: "plasmalemma hydrogen-transporting ATP synthase, F 0 sector" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting ATP synthase complex, coupling factor F (0)" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting ATP synthase complex, coupling factor F (o)" EXACT [OBOL:automatic] ! No parse for: GO:0045265 proton-transporting ATP synthase, stator stalk ! parse: GO:0045266 using "plasma membrane proton-transporting ATP synthase, stator stalk" => cdef(GO:0045265, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the plasma membrane-associated F0 proteins; is thought to prevent futile rotation of the catalytic core." ! PROPOSED: proton-transporting ATP synthase, stator stalk that OBO_REL:part_of plasma membrane [cdef(GO:0045265, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045266 ! plasma membrane proton-transporting ATP synthase, stator stalk intersection_of: GO:0045265 ! proton-transporting ATP synthase, stator stalk intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane hydrogen-transporting ATP synthase, stator stalk" EXACT [OBOL:automatic] synonym: "cell membrane proton-transporting ATP synthase, stator stalk" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane hydrogen-transporting ATP synthase, stator stalk" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting ATP synthase, stator stalk" EXACT [OBOL:automatic] synonym: "plasma membrane hydrogen-transporting ATP synthase, stator stalk" EXACT [OBOL:automatic] synonym: "plasma membrane proton-transporting ATP synthase, stator stalk" EXACT [OBOL:automatic] synonym: "plasmalemma hydrogen-transporting ATP synthase, stator stalk" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting ATP synthase, stator stalk" EXACT [OBOL:automatic] ! No parse for: GO:0045267 proton-transporting ATP synthase, catalytic core ! parse: GO:0045268 using "plasma membrane proton-transporting ATP synthase, catalytic core" => cdef(GO:0045267, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "The hexamer that possesses the catalytic activity of the plasma membrane hydrogen-transporting ATP synthase." ! PROPOSED: proton-transporting ATP synthase, catalytic core that OBO_REL:part_of plasma membrane [cdef(GO:0045267, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045268 ! plasma membrane proton-transporting ATP synthase, catalytic core intersection_of: GO:0045267 ! proton-transporting ATP synthase, catalytic core intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane hydrogen-transporting ATP synthase, catalytic core" EXACT [OBOL:automatic] synonym: "cell membrane proton-transporting ATP synthase, catalytic core" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane hydrogen-transporting ATP synthase, catalytic core" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting ATP synthase, catalytic core" EXACT [OBOL:automatic] synonym: "plasma membrane hydrogen-transporting ATP synthase, catalytic core" EXACT [OBOL:automatic] synonym: "plasma membrane proton-transporting ATP synthase, catalytic core" EXACT [OBOL:automatic] synonym: "plasmalemma hydrogen-transporting ATP synthase, catalytic core" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting ATP synthase, catalytic core" EXACT [OBOL:automatic] ! No parse for: GO:0045269 proton-transporting ATP synthase, central stalk ! parse: GO:0045270 using "plasma membrane proton-transporting ATP synthase, central stalk" => cdef(GO:0045269, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the plasma membrane-associated Fo proteins; rotates within the catalytic core during catalysis." ! PROPOSED: proton-transporting ATP synthase, central stalk that OBO_REL:part_of plasma membrane [cdef(GO:0045269, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045270 ! plasma membrane proton-transporting ATP synthase, central stalk intersection_of: GO:0045269 ! proton-transporting ATP synthase, central stalk intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane hydrogen-transporting ATP synthase, central stalk" EXACT [OBOL:automatic] synonym: "cell membrane proton-transporting ATP synthase, central stalk" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane hydrogen-transporting ATP synthase, central stalk" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane proton-transporting ATP synthase, central stalk" EXACT [OBOL:automatic] synonym: "plasma membrane hydrogen-transporting ATP synthase, central stalk" EXACT [OBOL:automatic] synonym: "plasma membrane proton-transporting ATP synthase, central stalk" EXACT [OBOL:automatic] synonym: "plasmalemma hydrogen-transporting ATP synthase, central stalk" EXACT [OBOL:automatic] synonym: "plasmalemma proton-transporting ATP synthase, central stalk" EXACT [OBOL:automatic] ! No parse for: GO:0045271 respiratory chain complex I ! parse: GO:0045272 using "plasma membrane respiratory chain complex I" => cdef(GO:0045271, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A subcomplex of the respiratory chain located in the plasma membrane. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone." ! PROPOSED: respiratory chain complex I that OBO_REL:part_of plasma membrane [cdef(GO:0045271, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045272 ! plasma membrane respiratory chain complex I intersection_of: GO:0045271 ! respiratory chain complex I intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane NADH dehydrogenase (ubiquinone) complex" EXACT [OBOL:automatic] synonym: "cell membrane NADH dehydrogenase complex (ubiquinone)" EXACT [OBOL:automatic] synonym: "cell membrane NADH-Q oxidoreductase complex" EXACT [OBOL:automatic] synonym: "cell membrane respiratory chain complex I" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane NADH dehydrogenase (ubiquinone) complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane NADH dehydrogenase complex (ubiquinone)" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane NADH-Q oxidoreductase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane respiratory chain complex I" EXACT [OBOL:automatic] synonym: "plasma membrane NADH dehydrogenase (ubiquinone) complex" EXACT [OBOL:automatic] synonym: "plasma membrane NADH dehydrogenase complex (ubiquinone)" EXACT [OBOL:automatic] synonym: "plasma membrane NADH-Q oxidoreductase complex" EXACT [OBOL:automatic] synonym: "plasmalemma NADH dehydrogenase (ubiquinone) complex" EXACT [OBOL:automatic] synonym: "plasmalemma NADH dehydrogenase complex (ubiquinone)" EXACT [OBOL:automatic] synonym: "plasmalemma NADH-Q oxidoreductase complex" EXACT [OBOL:automatic] synonym: "plasmalemma respiratory chain complex I" EXACT [OBOL:automatic] ! No parse for: GO:0045273 respiratory chain complex II ! parse: GO:0045274 using "plasma membrane respiratory chain complex II" => cdef(GO:0045273, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A part of the respiratory chain located in the plasma membrane, containing the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain." ! PROPOSED: respiratory chain complex II that OBO_REL:part_of plasma membrane [cdef(GO:0045273, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045274 ! plasma membrane respiratory chain complex II intersection_of: GO:0045273 ! respiratory chain complex II intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane respiratory chain complex II" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane respiratory chain complex II" EXACT [OBOL:automatic] synonym: "plasmalemma respiratory chain complex II" EXACT [OBOL:automatic] ! No parse for: GO:0045275 respiratory chain complex III ! parse: GO:0045276 using "plasma membrane respiratory chain complex III" => cdef(GO:0045275, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A part of the respiratory chain located in the plasma membrane, containing about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1." ! PROPOSED: respiratory chain complex III that OBO_REL:part_of plasma membrane [cdef(GO:0045275, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045276 ! plasma membrane respiratory chain complex III intersection_of: GO:0045275 ! respiratory chain complex III intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane respiratory chain complex III" EXACT [OBOL:automatic] synonym: "cell membrane ubiquinol-cytochrome c oxidoreductase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane respiratory chain complex III" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane ubiquinol-cytochrome c oxidoreductase complex" EXACT [OBOL:automatic] synonym: "plasma membrane ubiquinol-cytochrome c oxidoreductase complex" EXACT [OBOL:automatic] synonym: "plasmalemma respiratory chain complex III" EXACT [OBOL:automatic] synonym: "plasmalemma ubiquinol-cytochrome c oxidoreductase complex" EXACT [OBOL:automatic] ! No parse for: GO:0045277 respiratory chain complex IV ! parse: GO:0045278 using "plasma membrane respiratory chain complex IV" => cdef(GO:0045277, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A part of the respiratory chain located in the plasma membrane, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2)." ! PROPOSED: respiratory chain complex IV that OBO_REL:part_of plasma membrane [cdef(GO:0045277, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045278 ! plasma membrane respiratory chain complex IV intersection_of: GO:0045277 ! respiratory chain complex IV intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane cytochrome c oxidase complex" EXACT [OBOL:automatic] synonym: "cell membrane respiratory chain complex IV" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane cytochrome c oxidase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane respiratory chain complex IV" EXACT [OBOL:automatic] synonym: "plasma membrane cytochrome c oxidase complex" EXACT [OBOL:automatic] synonym: "plasmalemma cytochrome c oxidase complex" EXACT [OBOL:automatic] synonym: "plasmalemma respiratory chain complex IV" EXACT [OBOL:automatic] ! No parse for: GO:0045280 NADH dehydrogenase complex (ubiquinone) (sensu Bacteria) ! No parse for: GO:0045281 succinate dehydrogenase complex ! parse: GO:0045282 using "plasma membrane succinate dehydrogenase complex" => cdef(GO:0045281, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A multimeric complex which consists of flavoprotein (subunit A ; InterPro:003952), iron-sulfur protein (subunit B) and membrane-bound cytochrome b560 (subunit C; InterPro:000701). In some Archaea, the membrane-bound subunits (C or C and D) do not necessarily contain heme. Membrane-bound subunits can bind/react with quinones." ! PROPOSED: succinate dehydrogenase complex that OBO_REL:part_of plasma membrane [cdef(GO:0045281, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045282 ! plasma membrane succinate dehydrogenase complex intersection_of: GO:0045281 ! succinate dehydrogenase complex intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane succinate dehydrogenase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane succinate dehydrogenase complex" EXACT [OBOL:automatic] synonym: "plasmalemma succinate dehydrogenase complex" EXACT [OBOL:automatic] ! No parse for: GO:0045283 fumarate reductase complex ! parse: GO:0045284 using "plasma membrane fumarate reductase complex" => cdef(GO:0045283, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A membrane-bound flavoenzyme complex consisting of four subunits, A, B, C, and D. A and B comprise the membrane-extrinsic catalytic domain and C (InterPro:003510; InterPro:00224) and D (InterPro:003418) link the catalytic centers to the electron-transport chain. In some species, the complex has only three subunits, and in these cases, there is only one membrane anchor instead of two. This family consists of the 13 kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. Fumarate reductase couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, in a reaction opposite to that catalyzed by the related complex II of the respiratory chain (succinate dehydrogenase-(ubiquinone)). As in, but not restricted to, the taxon Bacteria (Bacteria, ncbi_taxonomy_id:2)." ! PROPOSED: fumarate reductase complex that OBO_REL:part_of plasma membrane [cdef(GO:0045283, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045284 ! plasma membrane fumarate reductase complex intersection_of: GO:0045283 ! fumarate reductase complex intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane fumarate reductase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane fumarate reductase complex" EXACT [OBOL:automatic] synonym: "plasmalemma fumarate reductase complex" EXACT [OBOL:automatic] ! No parse for: GO:0045285 ubiquinol-cytochrome-c reductase complex ! parse: GO:0045286 using "plasma membrane ubiquinol-cytochrome-c reductase complex" => cdef(GO:0045285, [OBO_REL:part_of=GO:0005886]) [-2] ! no existing xp def ! def: "A plasma membrane enzyme complex that contains cytochrome b/b6 and cytochrome c1." ! PROPOSED: ubiquinol-cytochrome-c reductase complex that OBO_REL:part_of plasma membrane [cdef(GO:0045285, [OBO_REL:part_of=GO:0005886])] [Term] id: GO:0045286 ! plasma membrane ubiquinol-cytochrome-c reductase complex intersection_of: GO:0045285 ! ubiquinol-cytochrome-c reductase complex intersection_of: OBO_REL:part_of GO:0005886 ! plasma membrane synonym: "cell membrane ubiquinol-cytochrome-c reductase complex" EXACT [OBOL:automatic] synonym: "cytoplasmic membrane ubiquinol-cytochrome-c reductase complex" EXACT [OBOL:automatic] synonym: "plasmalemma ubiquinol-cytochrome-c reductase complex" EXACT [OBOL:automatic] ! No parse for: GO:0045293 mRNA editing complex ! No parse for: GO:0045298 tubulin complex ! parse: GO:0045320 using "chloroplast hydrogen-translocating F-type ATPase complex" => cdef(GO:0045259, [OBO_REL:part_of=GO:0009507]) [-2] ! parse: GO:0045320 using "chloroplast proton-transporting ATP synthase complex" => cdef(GO:0045259, [OBO_REL:part_of=GO:0009507]) [-2] ! no existing xp def ! def: "A proton-transporting ATP synthase complex found in the chloroplast thylakoid membrane; it catalyzes the phosphorylation of ADP to ATP during photo-phosphorylation." ! PROPOSED: proton-transporting ATP synthase complex that OBO_REL:part_of chloroplast [cdef(GO:0045259, [OBO_REL:part_of=GO:0009507])] [Term] id: GO:0045320 ! chloroplast proton-transporting ATP synthase complex intersection_of: GO:0045259 ! proton-transporting ATP synthase complex intersection_of: OBO_REL:part_of GO:0009507 ! chloroplast synonym: "chloroplast hydrogen-transporting ATP synthase complex" EXACT [OBOL:automatic] ! parse: GO:0045323 using "interleukin-1 receptor complex" => cdef(GO:0043235, [binds_to=anon(interleukin-1, cell)]) [-14] ! no existing xp def ! def: "Complex that binds interleukin-1; comprises an alpha and a beta subunit." ! PROPOSED: receptor complex that binds_to anon(interleukin-1, cell) [cdef(GO:0043235, [binds_to=anon(interleukin-1, cell)])] [Term] id: GO:0045323 ! interleukin-1 receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:interleukin_-_1 ! No parse for: GO:0045334 clathrin-coated endocytic vesicle ! No parse for: GO:0045335 phagocytic vesicle ! No parse for: GO:0045336 clathrin-coated phagocytic vesicle ! No parse for: GO:0045495 pole plasm ! No parse for: GO:0046536 dosage compensation complex ! No parse for: GO:0046540 U4/U6 x U5 tri-snRNP complex ! No parse for: GO:0046581 intercellular canaliculus ! No parse for: GO:0046610 lysosomal proton-transporting V-type ATPase, V0 domain ! No parse for: GO:0046611 lysosomal proton-transporting V-type ATPase complex ! No parse for: GO:0046612 lysosomal proton-transporting V-type ATPase, V1 domain ! No parse for: GO:0046658 anchored to plasma membrane ! No parse for: GO:0046691 intracellular canaliculus ! No parse for: GO:0046695 SLIK (SAGA-like) complex ! parse: GO:0046696 using "LPS receptor complex" => cdef(GO:0043235, [binds_to=anon(LPS, cell)]) [-4] ! parse: GO:0046696 using "lipopolysaccharide receptor complex" => cdef(GO:0043235, [binds_to=anon(lipopolysaccharide, cell)]) [-19] ! no existing xp def ! def: "A multiprotein complex that consists of at least three proteins, CD14, TLR4, and MD-2, each of which is glycosylated." ! PROPOSED: receptor complex that binds_to anon(LPS, cell) [cdef(GO:0043235, [binds_to=anon(LPS, cell)])] [Term] id: GO:0046696 ! lipopolysaccharide receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:LPS ! No parse for: GO:0046727 capsomere ! No parse for: GO:0046729 viral procapsid ! No parse for: GO:0046798 viral portal complex ! No parse for: GO:0046806 viral scaffold ! No parse for: GO:0046808 assemblon ! No parse for: GO:0046809 replication compartment ! parse: GO:0046816 using "virion transport vesicle" => cdef(GO:0030133, [OBO_REL:part_of=GO:0019012]) [-2] ! no existing xp def ! def: "A vesicle used to transport the partial or complete virion between cellular compartments." ! PROPOSED: transport vesicle that OBO_REL:part_of virion [cdef(GO:0030133, [OBO_REL:part_of=GO:0019012])] [Term] id: GO:0046816 ! virion transport vesicle intersection_of: GO:0030133 ! transport vesicle intersection_of: OBO_REL:part_of GO:0019012 ! virion synonym: "complete virus particle transport vesicle" EXACT [OBOL:automatic] ! No parse for: GO:0046818 dense nuclear body ! No parse for: GO:0046821 extrachromosomal DNA ! No parse for: GO:0046858 chlorosome ! parse: GO:0046859 using "hydrogenosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0042566]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a hydrogenosome." ! PROPOSED: membrane that OBO_REL:part_of hydrogenosome [cdef(GO:0016020, [OBO_REL:part_of=GO:0042566])] [Term] id: GO:0046859 ! hydrogenosomal membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0042566 ! hydrogenosome ! parse: GO:0046860 using "glycosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0020015]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a glycosome." ! PROPOSED: membrane that OBO_REL:part_of glycosome [cdef(GO:0016020, [OBO_REL:part_of=GO:0020015])] [Term] id: GO:0046860 ! glycosome membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0020015 ! glycosome ! parse: GO:0046861 using "glyoxysome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0009514]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a glyoxysome." ! PROPOSED: membrane that OBO_REL:part_of glyoxysome [cdef(GO:0016020, [OBO_REL:part_of=GO:0009514])] [Term] id: GO:0046861 ! glyoxysomal membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0009514 ! glyoxysome ! parse: GO:0046862 using "chromoplast membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0009509]) [-2] ! no existing xp def ! def: "Either of the lipid bilayers that surround a chromoplast and form the chromoplast envelope." ! PROPOSED: membrane that OBO_REL:part_of chromoplast [cdef(GO:0016020, [OBO_REL:part_of=GO:0009509])] [Term] id: GO:0046862 ! chromoplast membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0009509 ! chromoplast ! No parse for: GO:0046868 mesosome ! No parse for: GO:0046930 pore complex ! No parse for: GO:0048046 apoplast ! parse: GO:0048179 using "activin receptor complex" => cdef(GO:0043235, [binds_to=anon(activin, cell)]) [-8] ! no existing xp def ! def: "Activin receptors can be type I or type II and are cell surface transmembrane receptors with serine/threonine activity." ! PROPOSED: receptor complex that binds_to anon(activin, cell) [cdef(GO:0043235, [binds_to=anon(activin, cell)])] [Term] id: GO:0048179 ! activin receptor complex intersection_of: GO:0043235 ! receptor complex intersection_of: binds_to cell:activin ! No parse for: GO:0048180 activin complex ! No parse for: GO:0048183 activin AB complex ! No parse for: GO:0048188 COMPASS complex ! No parse for: GO:0048189 Lid2 complex ! No parse for: GO:0048196 middle lamella-containing extracellular matrix ! No parse for: GO:0048217 pectic matrix ! No parse for: GO:0048222 glycoprotein network ! No parse for: GO:0048223 hemicellulose network ! No parse for: GO:0048224 lignin network ! No parse for: GO:0048225 suberin network ! No parse for: GO:0048226 Casparian strip ! No parse for: GO:0048237 rough endoplasmic reticulum lumen ! No parse for: GO:0048238 smooth endoplasmic reticulum lumen ! No parse for: GO:0048269 methionine adenosyltransferase complex ! No parse for: GO:0048353 primary endosperm nucleus ! No parse for: GO:0048471 perinuclear region of cytoplasm ! No parse for: GO:0048475 coated membrane ! No parse for: GO:0048476 Holliday junction resolvase complex ! No parse for: GO:0048492 ribulose bisphosphate carboxylase complex ! parse: GO:0048493 using "plasma membrane ribulose bisphosphate carboxylase complex" => cdef(GO:0048492, [OBO_REL:part_of=GO:0005886]) [-2] ! parse: GO:0048493 using "plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex" => cdef(GO:0048492, [OBO_REL:part_of=GO:0030075]) [-2] ! no existing xp def ! def: "A complex, located in the plasma membrane-derived thylakoid, containing either both large and small subunits or just small subunits. It carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate." ! PROPOSED: ribulose bisphosphate carboxylase complex that OBO_REL:part_of plasma membrane-derived thylakoid [cdef(GO:0048492, [OBO_REL:part_of=GO:0030075])] [Term] id: GO:0048493 ! plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex intersection_of: GO:0048492 ! ribulose bisphosphate carboxylase complex intersection_of: OBO_REL:part_of GO:0030075 ! plasma membrane-derived thylakoid synonym: "plasma membrane-derived thylakoid RubisCO complex" EXACT [OBOL:automatic] synonym: "thylakoid (sensu Cyanobacteria) RubisCO complex" EXACT [OBOL:automatic] synonym: "thylakoid (sensu Cyanobacteria) ribulose bisphosphate carboxylase complex" EXACT [OBOL:automatic] ! parse: GO:0048494 using "chromatophore ribulose bisphosphate carboxylase complex" => cdef(GO:0048492, [OBO_REL:part_of=GO:0042716]) [-2] ! no existing xp def ! def: "A complex containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate." ! PROPOSED: ribulose bisphosphate carboxylase complex that OBO_REL:part_of chromatophore [cdef(GO:0048492, [OBO_REL:part_of=GO:0042716])] [Term] id: GO:0048494 ! chromatophore ribulose bisphosphate carboxylase complex intersection_of: GO:0048492 ! ribulose bisphosphate carboxylase complex intersection_of: OBO_REL:part_of GO:0042716 ! chromatophore synonym: "chromatophore RubisCO complex" EXACT [OBOL:automatic] synonym: "chromatophore vesicle RubisCO complex" EXACT [OBOL:automatic] synonym: "chromatophore vesicle ribulose bisphosphate carboxylase complex" EXACT [OBOL:automatic] ! No parse for: GO:0048500 signal recognition particle ! No parse for: GO:0048501 signal recognition particle, plasma membrane targeting ! No parse for: GO:0048555 generative cell nucleus ! No parse for: GO:0048556 microsporocyte nucleus ! No parse for: GO:0048770 pigment granule ! No parse for: GO:0048786 presynaptic active zone ! No parse for: GO:0048787 active zone presynaptic plasma membrane ! No parse for: GO:0048788 presynaptic cytoskeletal matrix assembled at active zones ! No parse for: GO:0051077 secondary cell septum ! No parse for: GO:0051233 spindle midzone ! No parse for: GO:0051285 cell cortex of cell tip ! No parse for: GO:0051286 cell tip ! No parse for: GO:0055028 cortical microtubule ! No parse for: GO:0055029 nuclear DNA-directed RNA polymerase complex ! No parse for: GO:0055030 peptidoglycan-based spore wall ! No parse for: GO:0055031 gamma-tubulin large complex, equatorial microtubule organizing center ! No parse for: GO:0055032 gamma-tubulin large complex, spindle pole body ! No parse for: GO:0055033 gamma-tubulin large complex, interphase microtubule organizing center ! parse: GO:0055035 using "plastid thylakoid membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0031976]) [-2] ! parse: GO:0055035 using "plastid thylakoid membrane" => cdef(GO:0042651, [OBO_REL:part_of=GO:0009536]) [-2] ! parse: GO:0055035 using "plastid thylakoid membrane" => cdef(cdef(GO:0016020, [OBO_REL:part_of=GO:0009579]), [OBO_REL:part_of=GO:0009536]) [-3] ! no existing xp def ! def: "The lipid bilayer membrane of any thylakoid within a plastid." ! PROPOSED: thylakoid membrane that OBO_REL:part_of plastid [cdef(GO:0042651, [OBO_REL:part_of=GO:0009536])] [Term] id: GO:0055035 ! plastid thylakoid membrane intersection_of: GO:0042651 ! thylakoid membrane intersection_of: OBO_REL:part_of GO:0009536 ! plastid ! parse: GO:0055036 using "virion membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0019012]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a virion." ! PROPOSED: membrane that OBO_REL:part_of virion [cdef(GO:0016020, [OBO_REL:part_of=GO:0019012])] [Term] id: GO:0055036 ! virion membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0019012 ! virion synonym: "complete virus particle membrane" EXACT [OBOL:automatic] ! No parse for: GO:0055037 recycling endosome ! parse: GO:0055038 using "recycling endosome membrane" => cdef(GO:0016020, [OBO_REL:part_of=GO:0055037]) [-2] ! no existing xp def ! def: "The lipid bilayer surrounding a recycling endosome." ! PROPOSED: membrane that OBO_REL:part_of recycling endosome [cdef(GO:0016020, [OBO_REL:part_of=GO:0055037])] [Term] id: GO:0055038 ! recycling endosome membrane intersection_of: GO:0016020 ! membrane intersection_of: OBO_REL:part_of GO:0055037 ! recycling endosome ! No parse for: GO:0055039 trichocyst ! No parse for: GO:0055040 periplasmic flagellum ! No parse for: GO:0055044 symplast ! No parse for: GO:0055051 ATP-binding cassette (ABC) transporter complex, integrated substrate binding ! No parse for: GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing ! parse: GO:0060053 using "neurofilament cytoskeleton" => cdef(GO:0005856, [OBO_REL:part_of=GO:0005883]) [-2] ! no existing xp def ! def: "Intermediate filament cytoskeletal structure that is made up of neurofilaments. Neurofilaments are specialized intermediate filaments found in neurons." ! PROPOSED: cytoskeleton that OBO_REL:part_of neurofilament [cdef(GO:0005856, [OBO_REL:part_of=GO:0005883])] [Term] id: GO:0060053 ! neurofilament cytoskeleton intersection_of: GO:0005856 ! cytoskeleton intersection_of: OBO_REL:part_of GO:0005883 ! neurofilament synonym: "type IV intermediate filament cytoskeleton" EXACT [OBOL:automatic] ! No parse for: GO:0060076 excitatory synapse ! No parse for: GO:0060077 inhibitory synapse ! No parse for: GO:0060091 kinocilium ! No parse for: GO:0060102 collagen and cuticulin-based cuticle extracellular matrix ! parse: GO:0060103 using "collagen and cuticulin-based cuticle extracellular matrix part" => cdef(GO:0005575, [OBO_REL:part_of=GO:0060102]) [-2] ! no existing xp def ! def: "Any constituent part of the collagen and cuticulin-based cuticle extracellular matrix, a collagen and cuticulin-based noncellular, multilayered structure that is synthesized by an underlying ectodermal (hypodermal) cell layer." ! PROPOSED: cellular_component that OBO_REL:part_of collagen and cuticulin-based cuticle extracellular matrix [cdef(GO:0005575, [OBO_REL:part_of=GO:0060102])] [Term] id: GO:0060103 ! collagen and cuticulin-based cuticle extracellular matrix part intersection_of: GO:0005575 ! cellular_component intersection_of: OBO_REL:part_of GO:0060102 ! collagen and cuticulin-based cuticle extracellular matrix synonym: "collagen and cuticulin-based cuticle extracellular matrix cellular component" EXACT [OBOL:automatic] ! No parse for: GO:0060104 surface coat of collagen and cuticulin-based cuticle extracellular matrix ! No parse for: GO:0060105 epicuticle of collagen and cuticulin-based cuticle extracellular matrix ! No parse for: GO:0060106 cortical layer of collagen and cuticulin-based cuticle extracellular matrix ! No parse for: GO:0060107 annuli extracellular matrix ! No parse for: GO:0060108 annular furrow extracellular matrix ! No parse for: GO:0060109 medial layer of collagen and cuticulin-based cuticle extracellular matrix ! No parse for: GO:0060110 basal layer of collagen and cuticulin-based cuticle extracellular matrix ! No parse for: GO:0060111 alae of collagen and cuticulin-based cuticle extracellular matrix ! parse: GO:0065010 using "extracellular membrane-bound organelle" => cdef(GO:0043227, [OBO_REL:part_of=GO:0005576]) [-2] ! no existing xp def ! def: "Organized structure of distinctive morphology and function, bounded by a lipid bilayer membrane and occurring outside the cell." ! PROPOSED: membrane-bound organelle that OBO_REL:part_of extracellular region [cdef(GO:0043227, [OBO_REL:part_of=GO:0005576])] [Term] id: GO:0065010 ! extracellular membrane-bound organelle intersection_of: GO:0043227 ! membrane-bound organelle intersection_of: OBO_REL:part_of GO:0005576 ! extracellular region synonym: "extracellular region membrane-bound organelle" EXACT [OBOL:automatic] ! anonymous primitive or inner classes created as by-products: [Term] id: cell:AMPA_-_selective_glutamate is_anonymous: true name: AMPA-selective glutamate namespace: cell [Term] id: cell:Fc is_anonymous: true name: Fc namespace: cell [Term] id: cell:LPS is_anonymous: true name: LPS namespace: cell [Term] id: cell:N_-_methyl_-_D_-_aspartate_selective_glutamate is_anonymous: true name: N-methyl-D-aspartate selective glutamate namespace: cell [Term] id: cell:activator_ecdysone is_anonymous: true name: activator ecdysone namespace: cell [Term] id: cell:activin is_anonymous: true name: activin namespace: cell [Term] id: cell:focal is_anonymous: true name: focal namespace: cell [Term] id: cell:high_molecular_weight_kininogen is_anonymous: true name: high molecular weight kininogen namespace: cell [Term] id: cell:insulin is_anonymous: true name: insulin namespace: cell [Term] id: cell:interleukin_-_1 is_anonymous: true name: interleukin-1 namespace: cell [Term] id: cell:interleukin_-_1_2 is_anonymous: true name: interleukin-1 2 namespace: cell [Term] id: cell:interleukin_-_1_3 is_anonymous: true name: interleukin-1 3 namespace: cell [Term] id: cell:interleukin_-_1_8 is_anonymous: true name: interleukin-1 8 namespace: cell [Term] id: cell:interleukin_-_2 is_anonymous: true name: interleukin-2 namespace: cell [Term] id: cell:interleukin_-_2_0 is_anonymous: true name: interleukin-2 0 namespace: cell [Term] id: cell:interleukin_-_2_8 is_anonymous: true name: interleukin-2 8 namespace: cell [Term] id: cell:interleukin_-_3 is_anonymous: true name: interleukin-3 namespace: cell [Term] id: cell:interleukin_-_4 is_anonymous: true name: interleukin-4 namespace: cell [Term] id: cell:interleukin_-_5 is_anonymous: true name: interleukin-5 namespace: cell [Term] id: cell:interleukin_-_6 is_anonymous: true name: interleukin-6 namespace: cell [Term] id: cell:interleukin_-_9 is_anonymous: true name: interleukin-9 namespace: cell [Term] id: cell:ionotropic_glutamate is_anonymous: true name: ionotropic glutamate namespace: cell [Term] id: cell:kainate_selective_glutamate is_anonymous: true name: kainate selective glutamate namespace: cell [Term] id: cell:oncostatin_-_M is_anonymous: true name: oncostatin-M namespace: cell [Term] id: cell:pre_- is_anonymous: true name: pre- namespace: cell [Term] id: cell:repressor_ecdysone is_anonymous: true name: repressor ecdysone namespace: cell [Term] id: cell:signal_sequence is_anonymous: true name: signal sequence namespace: cell [Term] id: cell:site_of_polarized is_anonymous: true name: site of polarized namespace: cell [Term] id: cell:transporter_associated_with is_anonymous: true name: transporter associated with namespace: cell