Gene Ontology: Ontology Comparison Report

Files used:

New terms

ID name namespace
GO:0035925 mRNA 3'-UTR AU-rich region binding molecular_function
GO:0035926 chemokine (C-C motif) ligand 2 secretion biological_process
GO:0035927 RNA import into mitochondrion biological_process
GO:0035928 rRNA import into mitochondrion biological_process
GO:0035929 steroid hormone secretion biological_process
GO:0035930 corticosteroid hormone secretion biological_process
GO:0035931 mineralocorticoid secretion biological_process
GO:0035932 aldosterone secretion biological_process
GO:0035933 glucocorticoid secretion biological_process
GO:0035934 corticosterone secretion biological_process
GO:0035935 androgen secretion biological_process
GO:0035936 testosterone secretion biological_process
GO:0035937 estrogen secretion biological_process
GO:0035938 estradiol secretion biological_process
GO:0035939 microsatellite binding molecular_function
GO:0035940 negative regulation of peptidase activity in other organism biological_process
GO:0072688 SHREC complex localization biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:2000827 mitochondrial RNA surveillance biological_process

Obsoletions

None

Term merges

None

Term changes

Changes in term-related data
File 1 (15:07:2011 15:41, 1.2091) File 2 (22:07:2011 17:11, 1.2104)
GO:0001559 : regulation of cell growth by detection of nuclear:cytoplasmic ratio
is_a
GO:0001558
is_a
GO:0061387
GO:0005109 : frizzled binding
GO:0005110 : frizzled-2 binding
is_a
GO:0001664
is_a
GO:0005109
GO:0009549 : cellulose microfibril
def
Cellulose is a straight chain polysaccharide composed of B(14) linked glucose subunits. It is a major component of plant cell walls where it is found as microfibrils laid down in orthogonal layers. Higher plant microfibrils are about 10nm in diameter and extremely long in relation to their width. The cellulose molecules are oriented parallel to the long axis of the microfibril in a paracrystalline array, which provides great tensile strength. The microfibrils are held in place by the wall matrix and their orientation is closely controlled by the cell.
is_a
GO:0001527
relationship
part_of GO:0009530
part_of GO:0009531
def
A microfibril composed of cellulose arranged in orthogonal layers. Cellulose is a straight chain polysaccharide composed of B(14) linked glucose subunits. It is a major component of plant cell walls. Higher plant microfibrils are about 10nm in diameter and extremely long in relation to their width. The cellulose molecules are oriented parallel to the long axis of the microfibril in a paracrystalline array, which provides great tensile strength. The microfibrils are held in place by the wall matrix and their orientation is closely controlled by the cell.
relationship
part_of GO:0009505
GO:0016031 : tRNA import into mitochondrion
name
cytoplasmic tRNA import into mitochondrion
def
The directed movement of cytoplasmic tRNA into a mitochondrion.
synonym
"mitochondrial import of cytoplasmic tRNA" EXACT []
is_a
GO:0006839
name
tRNA import into mitochondrion
def
The directed movement of tRNA, transfer ribonucleic acid, from the cytoplasm into a mitochondrion.
synonym
"cytoplasmic tRNA import into mitochondrion" NARROW [GOC:bf]
"mitochondrial import of cytoplasmic tRNA" NARROW []
"nuclear-encoded tRNA import into mitochondrion" NARROW [GOC:bf]
is_a
GO:0035927
GO:0016049 : cell growth
relationship
part_of GO:0008361
GO:0017091 : AU-rich element binding
def
Interacting selectively and non-covalently with AU-rich elements within the 3' untranslated region of mRNAs.
def
Interacting selectively and non-covalently with a region of RNA containing frequent adenine and uridine bases.
synonym
"Adenylate/uridylate-rich element binding" EXACT [PMID:8578590]
GO:0019517 : L-threonine catabolic process to D-lactate
name
threonine catabolic process to D-lactate
def
The chemical reactions and pathways resulting in the breakdown of threonine (2-amino-3-hydroxybutyric acid) to form the compound methylglyoxal, which is subsequently converted to D-lactate.
synonym
"threonine breakdown to D-lactate" EXACT []
"threonine catabolic process to methylglyoxal" EXACT [MetaCyc:THRDLCTCAT-PWY]
"threonine catabolic process to pyruvate" RELATED [GOC:mah]
"threonine catabolism to D-lactate" EXACT [GOC:mah]
"threonine degradation to D-lactate" EXACT []
name
L-threonine catabolic process to D-lactate
def
The chemical reactions and pathways resulting in the breakdown of L- threonine (the L-enantiomer of 2-amino-3-hydroxybutyric acid) to form the compound methylglyoxal, which is subsequently converted to D-lactate.
synonym
"L-threonine breakdown to D-lactate" EXACT [GOC:bf]
"L-threonine catabolic process to (R)-lactate" BROAD [CHEBI:16004, GOC:bf]
"L-threonine catabolic process to methylglyoxal" EXACT [MetaCyc:THRDLCTCAT-PWY]
"L-threonine catabolic process to pyruvate" RELATED [GOC:bf, GOC:mah]
"L-threonine catabolism to D-lactate" EXACT [GOC:bf, GOC:mah]
"L-threonine degradation to D-lactate" EXACT [GOC:bf]
"threonine catabolic process to D-lactate" BROAD [GOC:bf]
GO:0019518 : L-threonine catabolic process to glycine
name
threonine catabolic process to glycine
def
The chemical reactions and pathways resulting in the breakdown of threonine (2-amino-3-hydroxybutyric acid) to form the compound glycine.
synonym
"threonine breakdown to glycine" EXACT [GOC:mah]
"threonine catabolic process to pyruvate" RELATED [GOC:mah]
"threonine catabolism to glycine" EXACT [GOC:mah]
"threonine degradation to glycine" EXACT [GOC:mah]
name
L-threonine catabolic process to glycine
def
The chemical reactions and pathways resulting in the breakdown of L-threonine (the L-enantiomer of 2-amino-3-hydroxybutyric acid) to form to form 2-amino-3-oxobutanoate, which is subsequently converted to glycine.
synonym
"L-threonine breakdown to glycine" EXACT [GOC:bf, GOC:mah]
"L-threonine catabolic process to pyruvate" RELATED [GOC:bf, GOC:mah]
"L-threonine catabolism to glycine" EXACT [GOC:bf, GOC:mah]
"L-threonine degradation to glycine" EXACT [GOC:bf, GOC:mah]
"threonine catabolic process to glycine" BROAD [GOC:bf]
GO:0030307 : positive regulation of cell growth
relationship
part_of GO:0045793
GO:0030308 : negative regulation of cell growth
relationship
part_of GO:0045792
GO:0030516 : regulation of axon extension
is_a
GO:0001558
is_a
GO:0061387
GO:0030947 : regulation of vascular endothelial growth factor receptor signaling pathway
is_a
GO:0090287
GO:0030948 : negative regulation of vascular endothelial growth factor receptor signaling pathway
is_a
GO:0090288
GO:0042701 : progesterone secretion
is_a
GO:0060986
is_a
GO:0035929
GO:0043400 : cortisol secretion
is_a
GO:0060986
synonym
"hydrocortisone secretion" EXACT [CHEBI:17650]
is_a
GO:0035933
GO:0045025 : mitochondrial degradosome
def
The mitochondrial degradosome (mtEXO) is a three-protein complex which has a 3' to 5' exoribonuclease activity and participates in intron-independent turnover and processing of mitochondrial transcripts.
def
A mitochondrial protein complex with 3' to 5' exoribonuclease activity that participates in intron-independent turnover and processing of mitochondrial transcripts. In humans, the mitochondrial degradosome is a pentameric complex, and in yeast it exists as a heterodimer.
synonym
"mtEXO" EXACT [PMID:10397341, PMID:9829834]
GO:0045457 : ecdysteroid secretion
is_a
GO:0060986
is_a
GO:0035929
GO:0048670 : regulation of collateral sprouting
is_a
GO:0001558
is_a
GO:0061387
GO:0048686 : regulation of sprouting of injured axon
is_a
GO:0001558
is_a
GO:0061387
GO:0051523 : cell growth mode switching, monopolar to bipolar
is_a
GO:0051510
is_a
GO:0051519
GO:0061389
GO:0051524 : cell growth mode switching, bipolar to monopolar
name
cell growth mode switch, bipolar to monopolar
name
cell growth mode switching, bipolar to monopolar
is_a
GO:0061389
GO:0051754 : meiotic sister chromatid cohesion, centromeric
relationship
part_of GO:0051177
is_a
GO:0051177
GO:0051760 : meiotic sister chromatid cohesion, arms
is_a
GO:0022402
relationship
part_of GO:0051177
is_a
GO:0051177
GO:0051963 : regulation of synapse assembly
name
regulation of synaptogenesis
def
Any process that modulates the frequency, rate or extent of synaptogenesis, the formation of a synapse.
name
regulation of synapse assembly
def
Any process that modulates the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.
synonym
"regulation of synapse biogenesis" EXACT []
"regulation of synaptogenesis" EXACT []
GO:0051964 : negative regulation of synapse assembly
name
negative regulation of synaptogenesis
def
Any process that stops, prevents, or reduces the frequency, rate or extent of synaptogenesis, the formation of a synapse.
synonym
"down regulation of synaptogenesis" EXACT []
"down-regulation of synaptogenesis" EXACT []
"downregulation of synaptogenesis" EXACT []
"inhibition of synaptogenesis" NARROW []
name
negative regulation of synapse assembly
def
Any process that stops, prevents, or reduces the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.
synonym
"down regulation of synapse assembly" EXACT []
"down-regulation of synapse assembly" EXACT []
"downregulation of synapse assembly" EXACT []
"inhibition of synapse assembly" NARROW []
"negative regulation of synapse biogenesis" EXACT []
"negative regulation of synaptogenesis" EXACT []
GO:0051965 : positive regulation of synapse assembly
name
positive regulation of synaptogenesis
def
Any process that activates, maintains or increases the frequency, rate or extent of synaptogenesis, the formation of a synapse.
synonym
"activation of synaptogenesis" NARROW []
"stimulation of synaptogenesis" NARROW []
"up regulation of synaptogenesis" EXACT []
"up-regulation of synaptogenesis" EXACT []
"upregulation of synaptogenesis" EXACT []
name
positive regulation of synapse assembly
def
Any process that activates, maintains or increases the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.
synonym
"activation of synapse assembly" NARROW []
"positive regulation of synapse biogenesis" EXACT []
"positive regulation of synaptogenesis" EXACT []
"stimulation of synapse assembly" NARROW []
"up regulation of synapse assembly" EXACT []
"up-regulation of synapse assembly" EXACT []
"upregulation of synapse assembly" EXACT []
GO:0052149 : modulation by symbiont of host peptidase activity
name
modulation by symbiont of host protease activity
def
The process in which an organism effects a change in host protease activity, the catalysis of the hydrolysis of peptide bonds in a protein. The host is defined as the larger of the organisms involved in a symbiotic interaction.
name
modulation by symbiont of host peptidase activity
def
The process in which an organism effects a change in host peptidase activity, the catalysis of the hydrolysis of peptide bonds in a protein. The host is defined as the larger of the organisms involved in a symbiotic interaction.
synonym
"modulation by symbiont of host protease activity" EXACT [GOC:bf]
GO:0052180 : negative regulation of peptidase activity in other organism involved in symbiotic interaction
is_a
GO:0010466
is_a
GO:0035940
GO:0052198 : modulation of peptidase activity in other organism involved in symbiotic interaction
name
modulation of protease activity in other organism involved in symbiotic interaction
def
The process in which an organism effects a change in protease activity, the catalysis of the hydrolysis of peptide bonds in a protein, in a second organism, where the two organisms are in a symbiotic interaction.
name
modulation of peptidase activity in other organism involved in symbiotic interaction
def
The process in which an organism effects a change in peptidase activity, the catalysis of the hydrolysis of peptide bonds in a protein, in a second organism, where the two organisms are in a symbiotic interaction.
synonym
"modulation of protease activity in other organism involved in symbiotic interaction" EXACT [GOC:bf]
GO:0052427 : modulation by host of symbiont peptidase activity
name
modulation by host of symbiont protease activity
def
The process in which an organism effects a change in symbiont protease activity, the catalysis of the hydrolysis of peptide bonds in a protein. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
name
modulation by host of symbiont peptidase activity
def
The process in which an organism effects a change in symbiont peptidase activity, the catalysis of the hydrolysis of peptide bonds in a protein. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
synonym
"modulation by host of symbiont protease activity" EXACT [GOC:bf]
GO:0060386 : synapse assembly involved in innervation
name
synaptogenesis involved in innervation
def
The biosynthesis of a synapse within a target tissue in which a nerve is invading.
name
synapse assembly involved in innervation
def
The assembly of a synapse within a target tissue in which a nerve is invading.
synonym
"synapse biogenesis involved in innervation" EXACT []
"synaptogenesis involved in innervation" EXACT []
GO:0061387 : regulation of extent of cell growth
relationship
part_of GO:0008361
GO:0070689 : L-threonine catabolic process to propionate
name
threonine catabolic process to propionate
def
The chemical reactions and pathways resulting in the breakdown of threonine (2-amino-3-hydroxybutyric acid) to form the compound propionate.
synonym
"threonine breakdown to propionate" EXACT [GOC:mah]
"threonine catabolism to propionate" EXACT [GOC:mah]
"threonine degradation to propionate" EXACT [GOC:mah]
name
L-threonine catabolic process to propionate
def
The chemical reactions and pathways resulting in the breakdown of L-threonine (the L-enantiomer of 2-amino-3-hydroxybutyric acid) to form the compound propionate.
synonym
"L-threonine breakdown to propionate" EXACT [GOC:bf, GOC:mah]
"L-threonine catabolism to propionate" EXACT [GOC:bf, GOC:mah]
"L-threonine degradation to propionate" EXACT [GOC:bf, GOC:mah]
"threonine catabolic process to propionate" BROAD [GOC:bf]
GO:0070690 : L-threonine catabolic process to acetyl-CoA
name
threonine catabolic process to acetyl-CoA
def
The chemical reactions and pathways resulting in the breakdown of threonine (2-amino-3-hydroxybutyric acid) to form the compound acetyl-Coenzyme A.
synonym
"threonine breakdown to acetyl-CoA" EXACT [GOC:mah]
"threonine catabolism to acetyl-CoA" EXACT [GOC:mah]
"threonine degradation to acetyl-CoA" EXACT [GOC:mah]
name
L-threonine catabolic process to acetyl-CoA
def
The chemical reactions and pathways resulting in the breakdown of L-threonine (the L-enantiomer of 2-amino-3-hydroxybutyric acid) into glycine and acetaldehyde, with acetaldehyde being subsequently converted to acetyl-CoA.
synonym
"L-threonine breakdown to acetyl-CoA" EXACT [GOC:bf, GOC:mah]
"L-threonine catabolism to acetyl-CoA" EXACT [GOC:bf, GOC:mah]
"L-threonine degradation to acetyl-CoA" EXACT [GOC:bf, GOC:mah]
"threonine catabolic process to acetyl-CoA" BROAD [GOC:bf]
GO:0071961 : mitotic sister chromatid cohesion, arms
is_a
GO:0022402
relationship
part_of GO:0007064
is_a
GO:0007064
GO:0071962 : mitotic sister chromatid cohesion, centromeric
relationship
part_of GO:0007064
is_a
GO:0007064
GO:2000804 : regulation of termination of RNA polymerase II transcription, poly(A)-coupled
is_a
GO:0006357
GO:2000823 : regulation of androgen receptor activity
is_a
GO:0060765

File Stats

Term counts for the old and new files
Ontology Old file New file Change
molecular function 9028
9028 (100.0%) defined
9030
9030 (100.0%) defined
+2
cellular component 2858
2858 (100.0%) defined
2858
2858 (100.0%) defined
0
biological process 21036
21035 (100.0%) defined
21053
21052 (100.0%) defined
+17
Obsolete 1560
(4.5% of total)
1560
(4.5% of total)
0 (0.0%)
Totals 32922
32921 (100.0%) defined
34482 inc. obsoletes
32941
32940 (100.0%) defined
34501 inc. obsoletes
+19 (+0.1%)