Ontology Comparison Report
==========================

Files used:
- file 1 (old): go-2011-06-18.obo; date: 17:06:2011 13:42; CVS revision: 1.2042
- file 2 (new): go-2011-06-25.obo; date: 24:06:2011 15:09; CVS revision: 1.2067


NEW TERMS
=========

ID	name	namespace
GO:0001173	DNA-dependent transcriptional start site selection	biological_process
GO:0001174	transcriptional start site selection at RNA polymerase II promoter	biological_process
GO:0001175	transcriptional start site selection at RNA polymerase III promoter	biological_process
GO:0001176	transcriptional start site selection at bacterial-type RNA polymerase promoter	biological_process
GO:0001177	regulation of transcriptional open complex formation at RNA polymerase II promoter	biological_process
GO:0001178	regulation of transcriptional start site selection at RNA polymerase II promoter	biological_process
GO:0002188	translation reinitiation	biological_process
GO:0035898	parathyroid hormone secretion	biological_process
GO:0035899	negative regulation of blood coagulation in other organism	biological_process
GO:0035900	response to isolation stress	biological_process
GO:0035901	cellular response to isolation stress	biological_process
GO:0035902	response to immobilization stress	biological_process
GO:0035903	cellular response to immobilization stress	biological_process
GO:0035904	aorta development	biological_process
GO:0035905	ascending aorta development	biological_process
GO:0035906	descending aorta development	biological_process
GO:0035907	dorsal aorta development	biological_process
GO:0035908	ventral aorta development	biological_process
GO:0035909	aorta morphogenesis	biological_process
GO:0035910	ascending aorta morphogenesis	biological_process
GO:0035911	descending aorta morphogenesis	biological_process
GO:0035912	dorsal aorta morphogenesis	biological_process
GO:0035913	ventral aorta morphogenesis	biological_process
GO:0035914	skeletal muscle cell differentiation	biological_process
GO:0038008	TRAF-mediated signal transduction	biological_process
GO:0038009	regulation of signal transduction by receptor internalization	biological_process
GO:0038010	positive regulation of signal transduction by receptor internalization	biological_process
GO:0038011	negative regulation of signal transduction by receptor internalization	biological_process
GO:0038012	negative regulation of Wnt receptor signaling pathway by Wnt receptor internalization	biological_process
GO:0038013	positive regulation of Wnt receptor signaling pathway by Wnt receptor internalization	biological_process
GO:0038014	negative regulation of insulin receptor signaling pathway by insulin receptor internalization	biological_process
GO:0038015	positive regulation of insulin receptor signaling pathway by insulin receptor internalization	biological_process
GO:0038016	insulin receptor internalization	biological_process
GO:0038017	Wnt receptor internalization	biological_process
GO:0038018	Wnt receptor catabolic process	biological_process
GO:0038019	Wnt receptor recycling	biological_process
GO:0038020	insulin receptor recycling	biological_process
GO:0039518	suppression by virus of host cytokine activity	biological_process
GO:0039519	modulation by virus of host autophagy	biological_process
GO:0039520	induction by virus of host autophagy	biological_process
GO:0039521	suppression by virus of host autophagy	biological_process
GO:0039522	suppression by virus of host mRNA export from nucleus	biological_process
GO:0039523	suppression by virus of host RNA polymerase II activity	biological_process
GO:0039524	suppression by virus of host mRNA processing	biological_process
GO:0039525	modulation by virus of host chromatin organization	biological_process
GO:0039526	modulation by virus of host apoptosis	biological_process
GO:0039527	suppression by virus of host TRAF-mediated signal transduction	biological_process
GO:0071963	establishment or maintenance of cell polarity regulating cell shape	biological_process
GO:0071964	establishment of cell polarity regulating cell shape	biological_process
GO:0097081	vascular smooth muscle cell fate commitment	biological_process
GO:0097082	vascular smooth muscle cell fate specification	biological_process
GO:0097083	vascular smooth muscle cell fate determination	biological_process
GO:0097084	vascular smooth muscle cell development	biological_process
GO:0097085	interferon regulatory factor 3-interferon regulatory factor 5 complex	cellular_component
GO:0097086	amniotic stem cell differentiation	biological_process
GO:0097087	interleukin-17A production	biological_process
GO:0097088	interleukin-17F production	biological_process
GO:2000763	positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process	biological_process
GO:2000764	positive regulation of semaphorin-plexin signaling pathway involved in outflow tract morphogenesis	biological_process
GO:2000765	regulation of cytoplasmic translation	biological_process
GO:2000766	negative regulation of cytoplasmic translation	biological_process
GO:2000767	positive regulation of cytoplasmic translation	biological_process
GO:2000768	positive regulation of nephron tubule epithelial cell differentiation	biological_process
GO:2000769	regulation of establishment or maintenance of cell polarity regulating cell shape	biological_process
GO:2000770	negative regulation of establishment or maintenance of cell polarity regulating cell shape	biological_process
GO:2000771	positive regulation of establishment or maintenance of cell polarity regulating cell shape	biological_process
GO:2000772	regulation of cellular senescence	biological_process
GO:2000773	negative regulation of cellular senescence	biological_process
GO:2000774	positive regulation of cellular senescence	biological_process
GO:2000775	histone H3-S10 phosphorylation involved in chromosome condensation	biological_process
GO:2000776	histone H4 acetylation involved in response to DNA damage stimulus	biological_process
GO:2000777	positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia	biological_process
GO:2000778	positive regulation of interleukin-6 secretion	biological_process
GO:2000779	regulation of double-strand break repair	biological_process
GO:2000780	negative regulation of double-strand break repair	biological_process
GO:2000781	positive regulation of double-strand break repair	biological_process
GO:2000782	regulation of establishment of cell polarity regulating cell shape	biological_process
GO:2000783	negative regulation of establishment of cell polarity regulating cell shape	biological_process
GO:2000784	positive regulation of establishment of cell polarity regulating cell shape	biological_process
GO:2000785	regulation of autophagic vacuole assembly	biological_process
GO:2000786	positive regulation of autophagic vacuole assembly	biological_process
GO:2000787	regulation of venous endothelial cell fate commitment	biological_process
GO:2000788	negative regulation of venous endothelial cell fate commitment	biological_process
GO:2000789	positive regulation of venous endothelial cell fate commitment	biological_process
GO:2000790	regulation of mesenchymal cell proliferation involved in lung development	biological_process
GO:2000791	negative regulation of mesenchymal cell proliferation involved in lung development	biological_process
GO:2000792	positive regulation of mesenchymal cell proliferation involved in lung development	biological_process
GO:2000793	cell proliferation involved in heart valve development	biological_process


OBSOLETIONS
===========

None


TERM MERGES
===========

None


TERM CHANGES
============

KEY:  'A' : added, 'D' : deleted, 'C' : changed

Term ID	name	def	subset	synonym	xref	is_a	intersection_of	relationship	
GO:0000408	C								
GO:0000988			1 A						
GO:0000989		C							
GO:0000990		C							
GO:0000991		C							
GO:0000995		C							
GO:0000996	C	C							
GO:0001007		C							
GO:0001026		C							
GO:0001027		C							
GO:0001028		C							
GO:0001029		C							
GO:0001040		C							
GO:0001053		C							
GO:0001071			1 A						
GO:0001076		C							
GO:0001082		C							
GO:0001083		C							
GO:0001134		C							
GO:0001139		C							
GO:0001320				1 D, 1 A					
GO:0003199	C			1 A					
GO:0003249						1 A			
GO:0003302						1 A			
GO:0003850					1 A	1 D, 1 A			
GO:0004331						1 D, 1 A			
GO:0004346		C			2 A	1 D, 1 A			
GO:0006849						1 A			
GO:0008877		C			2 A	1 D, 1 A			
GO:0010569						1 D, 1 A			
GO:0010746						1 A			
GO:0010747						1 A			
GO:0010748						1 A			
GO:0014902						1 D, 1 A			
GO:0015911						1 A			
GO:0019050						1 D, 1 A			
GO:0019051						1 D, 1 A			
GO:0019057	C			1 A					
GO:0019363						1 D			
GO:0019364						1 D			
GO:0019975		C							
GO:0030368		C							
GO:0030953	C								
GO:0030954	C								
GO:0031053	C			1 D, 1 A					
GO:0031054	C			1 D, 1 A					
GO:0031623		C							
GO:0031657	C								
GO:0032620		C							
GO:0032660		C							
GO:0032700		C							
GO:0032740		C							
GO:0032932	C								
GO:0033209		C		2 D, 2 A					
GO:0034246		C							
GO:0035195				1 A					
GO:0035196				1 A					
GO:0035278				1 A					
GO:0035279				1 A					
GO:0035280				1 A					
GO:0035281	C			1 A					
GO:0035424						1 A			
GO:0035893						1 A			
GO:0039502						1 A			
GO:0042132						1 D, 1 A			
GO:0042235		C							
GO:0045378		C							
GO:0045379		C							
GO:0045380		C							
GO:0046778						1 D, 1 A			
GO:0046780						1 D, 1 A			
GO:0047386						1 D, 1 A			
GO:0050307	C			2 D, 1 A	3 A	1 D, 1 A			
GO:0050308				1 D, 2 A	1 A	1 D, 1 A			
GO:0050309		C		2 D, 2 A	1 D	1 D, 1 A			
GO:0060172	C								
GO:0060414		C						1 D, 1 A	
GO:0060804	C	C		1 A					
GO:0060948						1 A			
GO:0060949						1 A			
GO:0060964				1 A					
GO:0060965				1 A					
GO:0061050						1 A			
GO:0061246						1 D, 1 A			
GO:0061340						1 D, 1 A			
GO:0061362						1 A			
GO:0061372						1 A			
GO:0070456						1 D, 1 A			
GO:0070878	C			1 A					
GO:0070883				1 A					
GO:0071430	C			1 A					
GO:0071527						1 A			
GO:0071847				3 A		1 D, 1 A			
GO:0072615		C							
GO:0090342				1 D			2 A		
GO:0090343				1 D					
GO:0090344				1 D					
GO:0097068				2 A					
GO:0097069				1 A					
GO:0097073									
GO:0097080				1 A					
GO:2000036						1 A			
GO:2000042						1 D, 1 A			
GO:2000100						1 A			
GO:2000247						1 D, 1 A			
GO:2000477						1 A			
GO:2000631	C			1 A					
GO:2000632	C			1 D, 1 A					
GO:2000633	C			1 D, 1 A					
GO:2000634	C			1 D, 1 A					
GO:2000635	C			1 D, 1 A					
GO:2000636	C			1 D, 1 A					
GO:2000637				1 A					
GO:2000722						1 A			
GO:2000725						1 A			
GO:2000730						1 A			
GO:2000733						1 A			
GO:2000750						1 D, 1 A			



FILE STATS
==========

Term counts for the old and new files

Ontology	Old file	New file	Change
molecular function	9023	9023	
	(9023 defined)	(9023 defined)	
cellular component	2854	2855	+1
	(2854 defined)	(2855 defined)	
biological process	20896	20983	+87
	(20896 defined)	(20982 defined)	

Obsolete	1559	1559	0
	(4.5% of total)	 (4.5% of total)	(0.0%)

Totals	32773	32861	+88 (+0.3%)
	32773 (100.0%) defined	32860 (100.0%) defined	
	34332 inc. obs	34420 inc. obs