format-version: 1.2
date: 18:10:2007 11:47
saved-by: jdeegan
auto-generated-by: OBO-Edit 1.101
synonymtypedef: NEWSYNCAT "Exhaustive manual" RELATED
default-namespace: Bioinformatics_Resource
namespace-id-rule: * BR:$sequence(7,0000001,1000000)$
remark: cvs version: $Revision: 1.2 $

[Term]
id: BR:0000001
name: Bioinformatics Resource Ontology
def: "x" [GOC:jic]

[Term]
id: BR:0000002
name: All Taxa
def: "This term encapsulates the total set of all organisms." [GOC:jic]
is_a: BR:0000592 ! Bioinformatics resource focus

[Term]
id: BR:0000003
name: Oryza sativa
def: "Cereal. Economic importance. " [GOC:jic]
synonym: "Rice" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000004
name: consortium
def: "Groups of organisations working together in a formal collaborative arrangement." [GOC:jic]
is_a: BR:0000001 ! Bioinformatics Resource Ontology

[Term]
id: BR:0000005
name: Rice Annotation Project
def: "The children of this group may not be quite right. I think the group is still forming." [ANN:thread, GOC:jic]
synonym: "RAP" EXACT []
is_a: BR:0000003 ! Oryza sativa
is_a: BR:0000004 ! consortium

[Term]
id: BR:0000006
name: National Institute of Agrobiological Sciences - Oryza sativa
synonym: "NIAS" EXACT []
is_a: BR:0000563 ! National Institute of Agrobiological Sciences

[Term]
id: BR:0000007
name: International Rice Genome Sequencing Project
def: "This is the consortium that sequenced rice. \n\n\nMembers\n\n\nRice Genome Research Program()\n\nThe Institute for Genomic Research(TIGR)\n\nNational Center for Gene Research Chinese Academy of Sciences(NCGR)\n\nArizona Genomics Institute(AGI)\n\nCold Spring Harbor Laboratory(CSHL)\n\nPlant Genome Initiative at Rutgers(PGIR)\n\nGenoscope(Genoscope)\n\nAcademia Sinica Plant Genome Center(ASPGC)\n\nIndian Initiative for Rice Genome Sequencing(IIRGS)\n\nKorea Rice Genome Research Program(KRGRP)\n\nNational Center for Genetic Engineering and Biotechnology(BIOTEC)\n\nWisconsin Rice Genome Project(GCOW)\n\nJohn Innes Centre(John Innes Centre)\n\nBRIGI - BRAZILIAN RICE GENOME INITIATIVE\n\n\nSome of this group had agreed to send annotation via Gramene but I think they not operate under RAP now. \n" [GOC:jic]
synonym: "IRGSP" EXACT []
relationship: part_of BR:0000005 ! Rice Annotation Project

[Term]
id: BR:0000008
name: Biological Information Research Center - Oryza sativa
synonym: "BIRC" EXACT []
relationship: part_of BR:0000449 ! Biological Information Research Center

[Term]
id: BR:0000009
name: National Institute of Advanced Industrial Science and Technology - Oryza sativa
synonym: "AIST" EXACT []
is_a: BR:0000562 ! National Institute of Advanced Industrial Science and Technology

[Term]
id: BR:0000010
name: DNA Data Bank of Japan - Oryza sativa
synonym: "DDBJ" EXACT []
is_a: BR:0000450 ! DNA Data Bank of Japan

[Term]
id: BR:0000011
name: National Institute of Genetics - Oryza sativa
synonym: "NIG" EXACT []
is_a: BR:0000531 ! Japan
relationship: part_of BR:0000005 ! Rice Annotation Project

[Term]
id: BR:0000012
name: The Institute for Genomic Research - Perkinsus marinus
def: "No GO planned" [GOC:jic]
synonym: "TIGR" EXACT []
relationship: part_of BR:0000017 ! Perkinsus marinus genome sequencing consortium (Ed)
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000013
name: Gramene
def: "GO Non-redundant rice database" [ANN:thread, GOC:jic]
is_a: BR:0000003 ! Oryza sativa
is_a: BR:0000533 ! Cornell University
relationship: part_of BR:0000532 ! mentor group - Gramene/OryzaBase

[Term]
id: BR:0000014
name: Triticum aestivum
synonym: "Wheat" EXACT []
is_a: BR:0000519 ! Liliopsida

[Term]
id: BR:0000015
name: Perkinsus marinus
def: "No GO planned" [GOC:jic]
is_a: BR:0000187 ! Alveolata

[Term]
id: BR:0000016
name: Center for Marine Biotechnology
synonym: "COMB" EXACT []
relationship: part_of BR:0000017 ! Perkinsus marinus genome sequencing consortium (Ed)

[Term]
id: BR:0000017
name: Perkinsus marinus genome sequencing consortium (Ed)
def: "No GO planned" [ANN:thread, GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000015 ! Perkinsus marinus

[Term]
id: BR:0000018
name: Tetrahymena thermophila
is_a: BR:0000312 ! Tetrahymena sp.

[Term]
id: BR:0000019
name: location
is_a: BR:0000001 ! Bioinformatics Resource Ontology

[Term]
id: BR:0000020
name: The Institute for Genomic Research
synonym: "TIGR" EXACT []
relationship: part_of BR:0000150 ! Maryland

[Term]
id: BR:0000021
name: The Institute for Genomic Research - Tetrahymena thermophila
def: "No GO planned" [GOC:jic]
synonym: "TIGR" BROAD []
relationship: part_of BR:0000020 ! The Institute for Genomic Research
relationship: part_of BR:0000433 ! Tetrahymena thermophila sequencing and annotation consortium (Ed)

[Term]
id: BR:0000022
name: The Institute for Genomic Research - Triticum aestivum
def: "No GO planned" [GOC:jic]
synonym: "TIGR" BROAD []
is_a: BR:0000014 ! Triticum aestivum
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000023
name: The Institute for Genomic Research - Oryza sativa
def: "For rice, we do automated GO annotations as part of our rice genome\nannotation project (rice.tigr.org). Gramene has also been annotating\nrice proteins but they get their proteins from Genbank to do this.  For\nrice, we will continue to do automated GO and GO/Plant Slim throughout\nthe duration of our project (next 3 years) and post this on our website.\nSince the genome annotation is evolving and I know Gramene has been\ndepositing to GO, we have chosen not to submit our GOs to anyone.\n" [GOC:jic]
synonym: "TIGR" BROAD []
is_a: BR:0000003 ! Oryza sativa
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000024
name: Theileria parva
is_a: BR:0000187 ! Alveolata

[Term]
id: BR:0000025
name: International Livestock Research Institute
synonym: "ILRI" BROAD []
relationship: part_of BR:0000027 ! Theileria parva sequencing consortium (Ed)

[Term]
id: BR:0000026
name: The Institute for Genomic Research - Theileria parva
synonym: "TIGR" BROAD []
relationship: part_of BR:0000020 ! The Institute for Genomic Research
relationship: part_of BR:0000027 ! Theileria parva sequencing consortium (Ed)

[Term]
id: BR:0000027
name: Theileria parva sequencing consortium (Ed)
def: "x" [ANN:thread]
is_a: BR:0000004 ! consortium
is_a: BR:0000024 ! Theileria parva

[Term]
id: BR:0000028
name: Arabidopsis thaliana
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000029
name: deprecated - The Institute for Genomic Research - Arabidopsis thaliana - manual annotation
def: "Annotation now passed to TAIR - no more annotation occurring at TIGR." [GOC:jic]
is_a: BR:0000334 ! The Institute for Genomic Research - Arabidopsis thaliana

[Term]
id: BR:0000030
name: deprecated - Munich Information Centre for Protein Sequences - Arabidopsis thaliana
def: "No longer annotating, annotation passed over to TAIR" [GOC:jic]
synonym: "MIPS" BROAD []
relationship: part_of BR:0000032 ! Arabidopsis thaliana annotation (Ed)

[Term]
id: BR:0000031
name: The Arabidopsis Information Resource
def: "Non-redundant GO database for this species.\n\nExhaustive manual annotation submitted on ongoing basis. \n\nAll of TIGR's arabidopsis annotation has been passed to TAIR. " [ANN:thread, GOC:jic]
synonym: "Exhaustive manual" RELATED NEWSYNCAT []
relationship: part_of BR:0000032 ! Arabidopsis thaliana annotation (Ed)
relationship: part_of BR:0000332 ! Carnegie Institution

[Term]
id: BR:0000032
name: Arabidopsis thaliana annotation (Ed)
def: "Now closed, annotation passed to TAIR." [GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000028 ! Arabidopsis thaliana

[Term]
id: BR:0000033
name: Solanum tuberosum consortium (Ed)
def: "No GO at this time" [ANN:thread, GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000041 ! Solanum tuberosum

[Term]
id: BR:0000034
name: The Institute for Genomic Research - Solanum tuberosum
is_a: BR:0000033 ! Solanum tuberosum consortium (Ed)
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000035
name: University of California Berkeley - Solanum tuberosum
is_a: BR:0000033 ! Solanum tuberosum consortium (Ed)

[Term]
id: BR:0000036
name: University of Minnesota - Solanum tuberosum
is_a: BR:0000033 ! Solanum tuberosum consortium (Ed)

[Term]
id: BR:0000037
name: University of Wisconsin - Solanum tuberosum
is_a: BR:0000033 ! Solanum tuberosum consortium (Ed)

[Term]
id: BR:0000038
name: Cornell University - Solanum tuberosum
is_a: BR:0000033 ! Solanum tuberosum consortium (Ed)

[Term]
id: BR:0000039
name: Sainsbury Lab, U.K. - Solanum tuberosum
is_a: BR:0000033 ! Solanum tuberosum consortium (Ed)

[Term]
id: BR:0000040
name: USDA-ARS at Prosser WA - Solanum tuberosum
is_a: BR:0000033 ! Solanum tuberosum consortium (Ed)
relationship: part_of BR:0000528 ! USDA

[Term]
id: BR:0000041
name: Solanum tuberosum
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000042
name: Brugia malayi
is_a: BR:0000185 ! Nematoda

[Term]
id: BR:0000043
name: Johns Hopkins University
relationship: part_of BR:0000047 ! Brugia malayi consortium (Ed)

[Term]
id: BR:0000044
name: New England Biolabs
relationship: part_of BR:0000047 ! Brugia malayi consortium (Ed)

[Term]
id: BR:0000045
name: Filarial Genome Network
def: "In co-ordination with this group. They are not part of the consortium" [GOC:jic]
relationship: part_of BR:0000047 ! Brugia malayi consortium (Ed)

[Term]
id: BR:0000046
name: The Institute for Genomic Research - Brugia malayi
synonym: "TIGR" BROAD []
relationship: part_of BR:0000020 ! The Institute for Genomic Research
relationship: part_of BR:0000047 ! Brugia malayi consortium (Ed)

[Term]
id: BR:0000047
name: Brugia malayi consortium (Ed)
def: "GO will be computed using Interpro2GO with some manual review." [ANN:thread, GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000042 ! Brugia malayi

[Term]
id: BR:0000048
name: Entamoeba histolytica
is_a: BR:0000308 ! Entamoeba

[Term]
id: BR:0000049
name: Sanger Institute Pathogen Sequencing
relationship: part_of BR:0000051 ! Entamoeba histolytica Consortium (Ed)

[Term]
id: BR:0000050
name: The Institute for Genomic Research - Entamoeba histolytica
def: "x" [ANN:thread]
relationship: part_of BR:0000020 ! The Institute for Genomic Research
relationship: part_of BR:0000051 ! Entamoeba histolytica Consortium (Ed)

[Term]
id: BR:0000051
name: Entamoeba histolytica Consortium (Ed)
def: "x" [ANN:thread]
is_a: BR:0000004 ! consortium
is_a: BR:0000048 ! Entamoeba histolytica

[Term]
id: BR:0000052
name: Plasmodium falciparum
is_a: BR:0000183 ! Plasmodium sp.

[Term]
id: BR:0000053
name: The International Malaria Genome Sequencing Consortium
def: "Formed in 1996 to sequence the genome of the human\nmalaria parasite Plasmodium falciparum, clone 3D7.  GO is available." [GOC:jic]
is_a: BR:0000052 ! Plasmodium falciparum

[Term]
id: BR:0000054
name: The Institute for Genomic Research - Plasmodium Falciparum
is_a: BR:0000053 ! The International Malaria Genome Sequencing Consortium
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000055
name: Plasmodium vivax
is_a: BR:0000183 ! Plasmodium sp.

[Term]
id: BR:0000056
name: The Institute for Genomic Research - Plasmodium vivax
def: "Probable automated GO with manual review." [GOC:jic]
is_a: BR:0000055 ! Plasmodium vivax
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000057
name: Plasmodium yoelii yoelii
is_a: BR:0000183 ! Plasmodium sp.

[Term]
id: BR:0000058
name: Plasmodium yoelii yoelii sequencing consortium (Ed)
def: "No GO, just sequencing" [ANN:thread, GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000057 ! Plasmodium yoelii yoelii

[Term]
id: BR:0000059
name: Naval Medical Research Center
is_a: BR:0000058 ! Plasmodium yoelii yoelii sequencing consortium (Ed)

[Term]
id: BR:0000060
name: The Institute for Genomic Research - Plasmodium yoelii yoelii
is_a: BR:0000058 ! Plasmodium yoelii yoelii sequencing consortium (Ed)
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000061
name: Toxoplasma gondii
is_a: BR:0000187 ! Alveolata

[Term]
id: BR:0000062
name: Apicomplexan Database Resources - Toxoplasma gondii
relationship: part_of BR:0000064 ! Apicomplexan Database Resources
relationship: part_of BR:0000065 ! Toxoplasma gondii sequencing consortium

[Term]
id: BR:0000063
name: The Institute for Genomic Research - Toxoplasma gondii
relationship: part_of BR:0000020 ! The Institute for Genomic Research
relationship: part_of BR:0000065 ! Toxoplasma gondii sequencing consortium

[Term]
id: BR:0000064
name: Apicomplexan Database Resources
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000065
name: Toxoplasma gondii sequencing consortium
def: "TIGR is funded by NIAID to complete a draft version\nin collaboration with the group of David Roos at the University of\nPennsylvania. Automated GO only." [ANN:thread, GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000061 ! Toxoplasma gondii

[Term]
id: BR:0000066
name: Sanger Centre - Toxoplasma gondii
def: "In addition to the sequencing efforts at TIGR, the Sanger\nCenter has been funded by Beowulf Genomics to determine the complete\nsequence of Toxoplasma gondii chromosome 1 and to undertake BAC end\nsequencing." [ANN:thread, GOC:jic]
is_a: BR:0000061 ! Toxoplasma gondii
relationship: part_of BR:0000067 ! Sanger Centre

[Term]
id: BR:0000067
name: Sanger Centre
is_a: BR:0000130 ! U.K.

[Term]
id: BR:0000068
name: David Sibley Research Group
def: "The group of David Sibley at the University of Washington is leading a Toxoplasma gondii EST sequencing project. " [GOC:jic]
is_a: BR:0000061 ! Toxoplasma gondii
relationship: part_of BR:0000069 ! University of Washington

[Term]
id: BR:0000069
name: University of Washington
def: "Campus Box 1089, One Brookings Drive, St. Louis, MO 63130.\n\nX@wustl.edu" [GOC:jic]
is_a: BR:0000155 ! Missouri

[Term]
id: BR:0000070
name: Trichomonas vaginalis
is_a: BR:0000211 ! Parabasalidea

[Term]
id: BR:0000071
name: The Institute for Genomic Research - Trichomonas vaginalis
def: "TIGR is funded by NIAID  Automated annotation." [ANN:thread, GOC:jic]
is_a: BR:0000070 ! Trichomonas vaginalis
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000072
name: Aspergillus sp.
is_a: BR:0000182 ! fungi

[Term]
id: BR:0000073
name: Aspergillus nidulans
is_a: BR:0000072 ! Aspergillus sp.

[Term]
id: BR:0000074
name: CADRE - Central Aspergillus Data Repository
def: "CADRE is a public resource for housing and analysing genomic data extracted from species of Aspergillus. It now houses annotation for three Aspergillus genomes obtained from a number of sequencing centres." [GOC:jic]
is_a: BR:0000072 ! Aspergillus sp.

[Term]
id: BR:0000075
name: CADRE - Aspergillus fumigatus (AF293)
def: "Sequence repository only" [ANN:thread, GOC:jic]
relationship: part_of BR:0000074 ! CADRE - Central Aspergillus Data Repository

[Term]
id: BR:0000076
name: CADRE - Aspergillus oryzae (RIB40)
def: "Sequence respository only. " [ANN:thread, GOC:jic]
relationship: part_of BR:0000074 ! CADRE - Central Aspergillus Data Repository

[Term]
id: BR:0000077
name: CADRE - Aspergillus nidulans (FGSC A4)
def: "Sequence repository only. " [ANN:thread, GOC:jic]
relationship: part_of BR:0000074 ! CADRE - Central Aspergillus Data Repository
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000078
name: The University of Manchester
def: "The University of Manchester, Oxford Road, Manchester UK M13 9PL Tel: +44 (0) 161 306 6000\nX@man.ac.uk" [GOC:jic]
is_a: BR:0000130 ! U.K.

[Term]
id: BR:0000079
name: The Institute for Genomic Research - two other Aspergillus sp.
def: "Sequencing and automated GO." [ANN:thread, GOC:jic]
is_a: BR:0000072 ! Aspergillus sp.
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000080
name: Eurofung Consortium - Aspergillus nidulans
def: "Eurofung is a network of European laboratories working on hyphal fungi of industrial and biomedical relevance as well as on model fungi. Last year our consortium has received an European Union grant to organize activities in the area of fungal genomics. One of those activities will focus on updating and improving the functional annotation of the genome of the model fungus Aspergillus nidulans. The organizers of this will be Dr Steve Oliver (Manchester), Dr Jennifer Wortman (TIGR), Dr Dave Ussery (Copenhagen), Dr Jaap Visser (Wageningen) and Dr Cees van den Hondel (Leiden). This project will not be limited to the participation of European laboratories but will be set up as a community project as much as possible. Therefore, we are quite happy that also a number of renowned groups from the USA and Japan participate.\n\n\nhttp://www.eurofung.net/frameset.php" [ANN:thread, GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000073 ! Aspergillus nidulans

[Term]
id: BR:0000081
name: Dr Piet van Solingen - Aspergillus nidulans
def: "Genencor International\nP.O. Box 218\n2300 AE Leiden\nThe Netherlands\nPhone : +31 71 5686144\nFax : +31 71 5686130\nE-mail: psolingen@genencor.com " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000082
name: Prof. Johan van den Berg - Aspergillus nidulans
def: "Wageningen University\nDreijenlaan 2, \n6703 HA Wageningen\nThe Netherlands\nPhone: + 31 317 484692\nFax: + 31 317 484011\nE-mail: johan.vandenBerg@Algemeen.MGIM.wau.nl" [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000083
name: Dr. Cees van den Hondel (Co-ordinator) - Aspergillus nidulans
def: "Clusius Laboratory\nLeiden University\nWassenaarseweg 64\n2333 AL Leiden\nThe Netherlands\nPhone: +31 30 6944461\nFax: +31 30 6944466\nE-mail: vandenhondel@voeding.tno.nl " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000084
name: Dr. Miguel Penalva - Aspergillus nidulans
def: "Centro de Investigaciones Biologicas CSIC\nVelazquez 144 \nMadrid 28006 \nSpain\nPhone: + 34 91 5611800\nFax: + 34 91 5627518\nE-mail: penalva@cib.csic.es " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000085
name: Dr. Jens Nielsen - Aspergillus nidulans
def: "Center for Process Biotechnology\nTechnical University of Denmark\nBuilding 223, DTU\n2800 Lyngby\nDenmark\nPhone: +45 4525 2696\nFax: +45 4588 4148\nE-mail: jn@ibt.dtu.dk" [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000086
name: Dr. Merja Penttila - Aspergillus nidulans
def: "VTT Biotechnology\nP.O.Box 1500\nFIN-02044 VTT\nFinland\nPhone: +358 9 4564504\nFax: +358 9 4552103\nE-mail: Merja.Penttila@vtt.fi " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000087
name: Dr. Hans von Doehren - Aspergillus nidulans
def: "Technical University Berlin\nFranklinstr. 29\nD-10587 Berlin\nGermany\nPhone: +49 30 31422697\nFax: +49 30 31424783\nE-mail: doehren@chem.tu-berlin.de \n" [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000088
name: Dr. David Archer - Aspergillus nidulans
def: "School of Life and Environmental Sciences\nUniversity of Nottingham\nUniversity Park\nNottingham NG7 2RD\nUK\nPhone: +44 115 9513313\nFax: +44 115 9513251\nE-mail: david.archer@nottingham.ac.uk \n" [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000089
name: Dr. Roland Contreras - Aspergillus nidulans
def: "Fundamental and Applied Molecular Biology\nGhent University\nLedeganckstraat 35\nGhent B-9000\nBelgium\nPhone: +32 9 2645136\nFax: +32 9 2648798\nE-mail: Roland.Contreras@dmb.rug.ac.be " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000090
name: Dr. Geoffrey Robson - Aspergillus nidulans
def: "School of Biological Sciences \nUniversity of Manchester\n1800 Stopford Building\nOxford Road\nManchester M13 9 PT\nUK\nPhone: +44 161 2755048\nFax: +44 161 2755656\nE-mail: geoff.robson@man.ac.uk " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000091
name: Dr. Christian Kubicek  - Aspergillus nidulans
def: "Institute of Biochemical Technology and Microbiology\nSection Microbial Biochemistry\nTU Vienna\nGetreidemarkt 9-172.5\nA-1060 Wien, \nAustria\nPhone: +43 1 5880117250\nFax: + 43 1 581 62 66\nE-mail: ckubicek@mail.zserv.tuwien.ac.at " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000092
name: Aspergillus niger
is_a: BR:0000072 ! Aspergillus sp.

[Term]
id: BR:0000093
name: Dr. Susan Madrid - Aspergillus nidulans
def: "Danisco Cultor Innovation \nLangebrogade 1 – P.O. Box 17\nDK-1001 Copenhagen \nDenmark\nPhone: +45 32662242\nFax: +45 32662167\nE-mail: g7smm@Danisco.dk " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000094
name: Dr. Herb Arst - Aspergillus nidulans
def: "Dept of Infectious Diseases\nImperial College School of Medicine\nDucane Rd 150\nLondon W12 0NN\nUK\nPhone: +44 20 8383 3436/2067\nFax: +44 20 8383 3394\nE-mail: h.arst@ic.ac.uk " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000095
name: Dr. Beatrice Felenbok - Aspergillus nidulans
def: "Institute de Genetique et Microbiologie, \nCNRS UMR 8621\nUniversite Paris-Sud XI \nBatiment 409, Centre Universitair d'Orsay\nF-91405 Orsay Cedex\nFrance\nPhone: +33 169156328\nFax: +33 169157808\nE-mail: felenbok@igmors.u-psud.fr " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000096
name: Dr. Daniel Ramon - Aspergillus nidulans
def: "Consejo Superior de Investigaciones Cientificas\nInstituto de Agroquimica y Tecnologia de Alimentos\nP.O. Box 73\nBurjassot\nValencia 46100\nSpain\nPhone: +3496 3900022\nFax: +349 6 3636301\nE-mail: dramon@iata.csic.es \n" [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000097
name: Dr. Cor Dijkema - Aspergillus nidulans
def: "Department of Molecular Physics \nWageningen University\nDreijenlaan 3 \n6703 HA Wageningen \nThe Netherlands\nPhone: +31 317 48 43 14\nFax: +31 317 48 27 25\nE-mail: cor.dijkema@mac.mf.wau.nl \n" [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000098
name: Dr. Kim Hansen - Aspergillus nidulans
def: "Novozymes A/S\nSmoermosevej 25 \nDK-2880 Bagsvaerd\nDenmark\nPhone: +45 44422460\nFax: +45 44426645\nE-mail: kimh@novozymes.com " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000099
name: Dr. Claudio Scazzocchio - Aspergillus nidulans
def: "Institut de Genetique et Microbiologie, \nCNRS UMR 8621, \nUniversite Paris-Sud XI\nBatiment 409, \nCentre Universitaire d'Orsay\nF-91405 Orsay Cedex, \nFrance\nPhone: +33 169156356/5701\nFax : +33 169157808\nE-mail: scazzocchio@igmors.u-psud.fr \n" [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000100
name: Dr. Axel Brakhage - Aspergillus nidulans
def: "Institut fur Mikrobiologie, \nUniversitat Hannover, \nSchneiderberg 50, D-30167 Hannover, \nGermany\nPhone: +49 511 7625945\nFax: +49 511 7625287\nE-mail: Brakhage@ifmb.uni-hannover.de " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000101
name: Dr. Juan F. Martin - Aspergillus nidulans
def: "Facultad de Ciencias Biologicas y Ambientales\nArea de Microbiologica\nUniversidad de Leon\n24071 Leon\nSpain \nPhone: +34 987 291505\nFax: +34 987 291506\nE-mail: degjmm@unileon.es" [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000102
name: Dr. Arnold Driessen - Aspergillus nidulans
def: "Department of Microbiology \nUniversity of Groningen \nKerklaan 30 \n9751 NN Haren \nThe Netherlands\nPhone: +31 50 3632164\nFax: +31 50 3632154\nE-mail: a.j.m.driessen@biol.rug.nl " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000103
name: Dr. Brigitte Schlegel - Aspergillus nidulans
def: "Hans-Knoell-Institute for Natural Products Research\nBeutenbergstrasse 11\nD-07745 Jena\nGermany\nPhone: +49 3641 656700\nFax: +49 3641 656705\nE-mail: Bschlegl@pmail.hki-jena.de " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000104
name: Dr. Geoffrey Turner - Aspergillus nidulans
def: "Department of Molecular Biology and Biotechnology\nUniversity of Sheffield \nFirth Court, Western Bank\nSheffield S10 2TN \nUK \nPhone: +44 01 14 2226211\nFax: +44 01 14 2728697\nE-mail: g.turner@sheffield.ac.uk " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000105
name: Dr. Torsten Neuhof - Aspergillus nidulans
def: "AnagnosTec GmbH\nIm Biotechnologiepark\n14943 Luckenwalde\nGermany\nPhone: +49 3371 681126\nFax: +49 3371 681127\nE-mail: torsten=neuhof@anagnostec.de " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000106
name: Dr. Hans van den Brink - Aspergillus nidulans
def: "Chr. Hansen A/S \nBoge Allee 10-12 \nDK-2970\nHorsholm \nDenmark\nPhone: +45 45 74 84 55\nFax: +45 45 74 89 94\nE-mail: Hansvanden.Brink@dk.chr-hansen.com " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000107
name: Dr. Ingeborg van Gemeren - Aspergillus nidulans
def: "BAC BV (Unilever Research) \nHuizerstraatweg 28 \n1411 GP Naarden \nThe Netherlands \nPhone: +31 35 6992595\nFax: +31 35 6949576\nE-mail: ingeborg-van.gemeren@unilever.com " [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000108
name: Dr. Thierry Dauvrin - Aspergillus nidulans
def: "Beldem s.a\nRue Bourrie, 12\nB-5300 Andenne\nBelgium\nPhone: +32 85 823250\nFax: +32 85 823260\nE-mail: tdauvrin@beldem.com\n" [GOC:jic]
relationship: part_of BR:0000080 ! Eurofung Consortium - Aspergillus nidulans

[Term]
id: BR:0000109
name: Joint Genome Institute - Aspergillus niger
def: "JGI is in production sequencing mode for \nthe A. niger genome and have begun construction of the cDNA libraries for EST\ngeneration. \n\nPacific Northwest National Laboratory\n" [ANN:thread, GOC:jic]
is_a: BR:0000092 ! Aspergillus niger
relationship: part_of BR:0000110 ! Joint Genome Institute

[Term]
id: BR:0000110
name: Joint Genome Institute
is_a: BR:0000135 ! California

[Term]
id: BR:0000111
name: Trypanosoma brucei
is_a: BR:0000115 ! Trypanosoma sp.

[Term]
id: BR:0000112
name: The Institute for Genomic Research - Trypanosoma brucei
def: "Exhaustive manual annotation" [GOC:jic]
synonym: "Exhaustive manual" RELATED NEWSYNCAT []
relationship: part_of BR:0000020 ! The Institute for Genomic Research
relationship: part_of BR:0000113 ! Trypanosoma brucei sequencing consortium

[Term]
id: BR:0000113
name: Trypanosoma brucei sequencing consortium
def: "Most of the  manual annotation, including manual GO\nwas done at TIGR in the context of the collaboration.  Passed on to\nGeneDB for maintenance and dissemination." [ANN:thread, GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000111 ! Trypanosoma brucei

[Term]
id: BR:0000114
name: Seattle Biomedical Research Institute - Trypanosoma brucei
relationship: part_of BR:0000113 ! Trypanosoma brucei sequencing consortium
relationship: part_of BR:0000117 ! Seattle Biomedical Research Institute

[Term]
id: BR:0000115
name: Trypanosoma sp.
is_a: BR:0000186 ! Trypanosomatidae

[Term]
id: BR:0000116
name: Trypanosoma cruzi
is_a: BR:0000115 ! Trypanosoma sp.

[Term]
id: BR:0000117
name: Seattle Biomedical Research Institute
is_a: BR:0000177 ! Washington

[Term]
id: BR:0000118
name: The Institute for Genomic Research - Trypanosoma cruzi
def: "Go transferred through COGS from T. brucei, automated. Collaboration of TIGR and who?" [GOC:jic]
is_a: BR:0000116 ! Trypanosoma cruzi
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000119
name: Leishmania major
is_a: BR:0000311 ! Leishmania sp.

[Term]
id: BR:0000120
name: The institute for Genomic Research - Leishmania major
def: "GO transferred through COGS from T.\nbrucei, automated." [ANN:thread, GOC:jic]
is_a: BR:0000119 ! Leishmania major
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000121
name: Schistosoma mansoni
is_a: BR:0000188 ! Platyhelminthes

[Term]
id: BR:0000122
name: The Institute for Genomic Research - Schistosoma mansoni
def: "Sequencing in preliminary stages. " [GOC:jic]
is_a: BR:0000121 ! Schistosoma mansoni
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000123
name: Consortium for Maize Genomics
def: "x" [ANN:thread]
is_a: BR:0000004 ! consortium
is_a: BR:0000124 ! Zea mays

[Term]
id: BR:0000124
name: Zea mays
synonym: "maize" EXACT []
synonym: "sweetcorn" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000125
name: The Donald Danforth Plant Science Center - Maize
relationship: part_of BR:0000123 ! Consortium for Maize Genomics

[Term]
id: BR:0000126
name: The Institute for Genomic Research - Maize
def: "For maize, please contact Pablo Rabinowicz and Agnes Chan, who I cced on\nthis email. They are the ones working on the maize genome project here.\nWe have a maize array project (www.maizearray.org) where we are\nproviding GO assingments to genes on the array, but this is not\nexhaustive of the genome as we are only doing it for genes on the array.\n\nBut later: \nCurrently we are not generating GO annotations for maize, but we may do so in the future through automated assignments.\n\n\nOF course, the TIGR gene indices also provides GO annotation for all the\ngene indices, including rice and maize. You can email them at\ntgi@tigr.org" [GOC:jic]
relationship: part_of BR:0000123 ! Consortium for Maize Genomics

[Term]
id: BR:0000127
name: Purdue University - Maize
relationship: part_of BR:0000123 ! Consortium for Maize Genomics

[Term]
id: BR:0000128
name: Orion Genomics - Maize
relationship: part_of BR:0000123 ! Consortium for Maize Genomics

[Term]
id: BR:0000129
name: U.S.
relationship: part_of BR:0000440 ! The Americas

[Term]
id: BR:0000130
name: U.K.
relationship: part_of BR:0000439 ! Europe

[Term]
id: BR:0000131
name: Alabama
synonym: "AL" EXACT []
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000132
name: Alaska
synonym: "AK" EXACT []
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000133
name: Arizona
synonym: "AZ" EXACT []
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000134
name: Arkansas
synonym: "AR" EXACT []
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000135
name: California
synonym: "CA" EXACT []
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000136
name: Colorado
synonym: "CO" EXACT []
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000137
name: Connecticut
synonym: "CT" EXACT []
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000138
name: Delaware
synonym: "DE" EXACT []
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000139
name: Florida
synonym: "FL" EXACT []
is_a: BR:0000377 ! A-F

[Term]
id: BR:0000140
name: Georgia
synonym: "GA" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000141
name: Hawaii
synonym: "HI" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000142
name: Idaho
synonym: "ID" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000143
name: Illinois
synonym: "IL" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000144
name: Indiana
synonym: "IN" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000145
name: Iowa
synonym: "IA" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000146
name: Kansas
synonym: "KS" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000147
name: Kentucky
synonym: "KY" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000148
name: Louisiana
synonym: "LA" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000149
name: Maine
synonym: "ME" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000150
name: Maryland
synonym: "MD" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000151
name: Massachusetts
synonym: "MA" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000152
name: Michigan
synonym: "MI" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000153
name: Minnesota
synonym: "MN" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000154
name: Mississippi
synonym: "MS" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000155
name: Missouri
synonym: "MO" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000156
name: Montana
synonym: "MT" EXACT []
is_a: BR:0000378 ! G-M

[Term]
id: BR:0000157
name: Nebraska
synonym: "NE" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000158
name: Nevada
synonym: "NV" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000159
name: New Hampshire
synonym: "NH" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000160
name: New Jersey
synonym: "NJ" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000161
name: New Mexico
synonym: "NM" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000162
name: New York
synonym: "NY" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000163
name: North Carolina
synonym: "NC" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000164
name: North Dakota
synonym: "ND" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000165
name: Ohio
synonym: "OH" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000166
name: Oklahoma
synonym: "OK" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000167
name: Oregon
synonym: "OR" EXACT []
is_a: BR:0000379 ! N-O

[Term]
id: BR:0000168
name: Pennsylvania
synonym: "PA" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000169
name: Rhode Island
synonym: "RI" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000170
name: South Carolina
synonym: "SC" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000171
name: South Dakota
synonym: "SD" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000172
name: Tennessee
synonym: "TN" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000173
name: Texas
synonym: "TX" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000174
name: Utah
synonym: "UT" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000175
name: Vermont
synonym: "VT" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000176
name: Virginia
synonym: "VA" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000177
name: Washington
synonym: "WA" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000178
name: West Virginia
synonym: "WV" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000179
name: Wisconsin
synonym: "WI" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000180
name: Wyoming
synonym: "WY" EXACT []
is_a: BR:0000380 ! P-Z

[Term]
id: BR:0000181
name: Viridiplantae
relationship: part_of BR:0000184 ! Eukaryota

[Term]
id: BR:0000182
name: fungi
is_a: BR:0000309 ! Fungi/Metazoa

[Term]
id: BR:0000183
name: Plasmodium sp.
is_a: BR:0000187 ! Alveolata

[Term]
id: BR:0000184
name: Eukaryota
relationship: part_of BR:0000002 ! All Taxa

[Term]
id: BR:0000185
name: Nematoda
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000186
name: Trypanosomatidae
is_a: BR:0000189 ! Euglenozoa

[Term]
id: BR:0000187
name: Alveolata
synonym: "alveolates" EXACT []
relationship: part_of BR:0000184 ! Eukaryota

[Term]
id: BR:0000188
name: Platyhelminthes
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000189
name: Euglenozoa
relationship: part_of BR:0000184 ! Eukaryota

[Term]
id: BR:0000190
name: Protostomia
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000191
name: Arthropoda
is_a: BR:0000190 ! Protostomia

[Term]
id: BR:0000192
name: Insecta
is_a: BR:0000191 ! Arthropoda

[Term]
id: BR:0000193
name: Diptera
is_a: BR:0000192 ! Insecta

[Term]
id: BR:0000194
name: Aedes aegypti
alt_id: BR:0000195
def: "disease vector (mosquito)" [GOC:jic]
is_a: BR:0000193 ! Diptera

[Term]
id: BR:0000196
name: The Institute for Genomic Research - Aedes aegypti
def: "automated GO annotation at TIGR" [GOC:jic]
relationship: part_of BR:0000020 ! The Institute for Genomic Research
relationship: part_of BR:0000198 ! Aedes aegypti sequencing consortium (Ed)

[Term]
id: BR:0000197
name: BROAD Institute - Aedes aegypti
def: "http://www.broad.mit.edu/\n\nCambridge, MA" [GOC:jic]
relationship: part_of BR:0000198 ! Aedes aegypti sequencing consortium (Ed)
relationship: part_of BR:0000199 ! BROAD Institute

[Term]
id: BR:0000198
name: Aedes aegypti sequencing consortium (Ed)
def: "x" [ANN:thread]
is_a: BR:0000004 ! consortium
is_a: BR:0000194 ! Aedes aegypti

[Term]
id: BR:0000199
name: BROAD Institute
def: "(Collaboration of MIT, Harvard and others.)\nhttp://www.broad.mit.edu/index.html" [GOC:jic]
is_a: BR:0000151 ! Massachusetts

[Term]
id: BR:0000200
name: University of Indiana
is_a: BR:0000144 ! Indiana

[Term]
id: BR:0000201
name: Culex pipiens quinquefasciatus
synonym: "southern house mosquito" EXACT []
is_a: BR:0000367 ! Mosquito

[Term]
id: BR:0000202
name: Culex pipiens quinquefasciatus sequencing consortium (ed)
def: "Automated annotation planned." [ANN:thread, GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000201 ! Culex pipiens quinquefasciatus

[Term]
id: BR:0000203
name: The Institute for Genomic Research - Culex pipiens quinquefasciatus
is_a: BR:0000202 ! Culex pipiens quinquefasciatus sequencing consortium (ed)
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000204
name: BROAD Institute - Culex pipiens quinquefasciatus
is_a: BR:0000199 ! BROAD Institute
is_a: BR:0000202 ! Culex pipiens quinquefasciatus sequencing consortium (ed)

[Term]
id: BR:0000205
name: University of California - Culex pipiens quinquefasciatus
is_a: BR:0000202 ! Culex pipiens quinquefasciatus sequencing consortium (ed)
relationship: part_of BR:0000208 ! University of California

[Term]
id: BR:0000206
name: University of Notre Dame - Culex pipiens quinquefasciatus
is_a: BR:0000202 ! Culex pipiens quinquefasciatus sequencing consortium (ed)
relationship: part_of BR:0000209 ! University of Notre Dame

[Term]
id: BR:0000207
name: University of Liverpool - Culex pipiens quinquefasciatus
is_a: BR:0000202 ! Culex pipiens quinquefasciatus sequencing consortium (ed)
relationship: part_of BR:0000210 ! University of Liverpool

[Term]
id: BR:0000208
name: University of California
is_a: BR:0000135 ! California

[Term]
id: BR:0000209
name: University of Notre Dame
def: "http://www.nd.edu/" [GOC:jic]
is_a: BR:0000144 ! Indiana

[Term]
id: BR:0000210
name: University of Liverpool
def: "http://www.liv.ac.uk/" [GOC:jic]
is_a: BR:0000130 ! U.K.

[Term]
id: BR:0000211
name: Parabasalidea
relationship: part_of BR:0000184 ! Eukaryota

[Term]
id: BR:0000212
name: Metazoa
is_a: BR:0000309 ! Fungi/Metazoa

[Term]
id: BR:0000213
name: Gene Index - Astatotilapia burtoni 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000348 ! Astatotilapia burtoni

[Term]
id: BR:0000214
name: Gene Index - Amblyomma variegatum 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000366 ! Amblyomma variegatum

[Term]
id: BR:0000215
name: Gene Index - Aedes aegypti 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
relationship: part_of BR:0000196 ! The Institute for Genomic Research - Aedes aegypti

[Term]
id: BR:0000216
name: Gene Index - Atlantic salmon 3.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000360 ! Atlantic salmon

[Term]
id: BR:0000217
name: Gene Index - Brugia malayi 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000046 ! The Institute for Genomic Research - Brugia malayi
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000218
name: Gene Index - Boophilus microplus 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000369 ! Boophilus microplus

[Term]
id: BR:0000219
name: Gene Index - Catfish 6.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000368 ! Catfish

[Term]
id: BR:0000220
name: Gene Index - Cattle 12.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000349 ! Bos taurus

[Term]
id: BR:0000221
name: Gene Index - Caenorhabditis elegans 9.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000352 ! Caenorhabditis elegans

[Term]
id: BR:0000222
name: Gene Index - Canis familiaris 7.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000358 ! Canis familiaris

[Term]
id: BR:0000223
name: Gene Index - Chicken 11.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000347 ! Gallus gallus

[Term]
id: BR:0000224
name: Gene Index - Ciona intestinalis 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000361 ! Ciona intestinalis

[Term]
id: BR:0000225
name: Gene Index - Drosophila 11.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000384 ! Institute for Genomic Research - Drosophila melanogaster

[Term]
id: BR:0000226
name: Gene Index - Fugu 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000355 ! Fugu

[Term]
id: BR:0000227
name: Gene Index - Haplochromis chilotes 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000372 ! Haplochromis chilotes

[Term]
id: BR:0000228
name: Gene Index - Haplochromis sp. 'red tail sheller' 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000376 ! Haplochromis sp. 'red tail sheller'

[Term]
id: BR:0000229
name: Gene Index - Honey bee 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000354 ! Honey bee

[Term]
id: BR:0000230
name: Gene Index - Human 17.0
def: "x" [ANN:thread]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000351 ! Homo sapiens

[Term]
id: BR:0000231
name: Gene Index - Killifish 3.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000362 ! Killifish

[Term]
id: BR:0000232
name: Gene Index - Mosquito 9.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
relationship: part_of BR:0000203 ! The Institute for Genomic Research - Culex pipiens quinquefasciatus

[Term]
id: BR:0000233
name: Gene Index - Mouse 16.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000403 ! The institute for Genomic Research - Mus musculus

[Term]
id: BR:0000234
name: Gene Index - Oryzias latipes 6.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000374 ! Oryzias latipes

[Term]
id: BR:0000235
name: Gene Index - Onchocerca volvulus 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000338 ! Onchocerca volvulus

[Term]
id: BR:0000236
name: Gene Index - Porcine 12.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000363 ! Porcine

[Term]
id: BR:0000237
name: Gene Index - Rat 14.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000356 ! Rattus norvegicus

[Term]
id: BR:0000238
name: Gene Index - Rhipicephalus appendiculatus 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000359 ! Rhipicephalus appendiculatus

[Term]
id: BR:0000239
name: Gene Index - Rainbow Trout 6.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000371 ! Rainbow Trout

[Term]
id: BR:0000240
name: Gene Index - Schistosoma mansoni 6.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000122 ! The Institute for Genomic Research - Schistosoma mansoni
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000241
name: Gene Index - Ursus amercanus 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000370 ! Ursus amercanus

[Term]
id: BR:0000242
name: Gene Index - Xenopus laevis 9.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000350 ! Xenopus laevis

[Term]
id: BR:0000243
name: Gene Index - Xenopus tropicalis 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000364 ! Xenopus tropicalis

[Term]
id: BR:0000244
name: Gene Index - Zebrafish 17.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000353 ! Danio rerio

[Term]
id: BR:0000245
name: Gene Index - Aquilegia 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000314 ! Aquilegia

[Term]
id: BR:0000246
name: Gene Index - Arabidopsis 13.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000334 ! The Institute for Genomic Research - Arabidopsis thaliana

[Term]
id: BR:0000247
name: Gene Index - Barley 9.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000315 ! Hordeum vulgare subsp. vulgare

[Term]
id: BR:0000248
name: Gene Index - Beet 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000316 ! Beta vulgaris subsp. vulgaris

[Term]
id: BR:0000249
name: Gene Index - Brassica napus 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000317 ! Brassica napus

[Term]
id: BR:0000250
name: Gene Index - Chlamydo- monas reinhardtii 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000318 ! Chlamydo- monas reinhardtii

[Term]
id: BR:0000251
name: Gene Index - Cocoa 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000319 ! Theobroma cacao

[Term]
id: BR:0000252
name: Gene Index - Common Bean 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000320 ! Common Bean

[Term]
id: BR:0000253
name: Gene Index - Cotton 6.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000321 ! Gossypium hirsutum

[Term]
id: BR:0000254
name: Gene Index - Grape 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000322 ! Vitis vinifera

[Term]
id: BR:0000255
name: Gene Index - Ice Plant 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000323 ! Ice Plant

[Term]
id: BR:0000256
name: Gene Index - Lettuce 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000344 ! Lettuce

[Term]
id: BR:0000257
name: Gene Index - Lotus 3.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000324 ! Lotus

[Term]
id: BR:0000258
name: Gene Index - Maize 17.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000126 ! The Institute for Genomic Research - Maize
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000259
name: Gene Index - Medicago truncatula 8.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000341 ! Medicago truncatula

[Term]
id: BR:0000260
name: Gene Index - Nicotiana benthamiana 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000333 ! Nicotiana benthamiana

[Term]
id: BR:0000261
name: Gene Index - Onion 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000328 ! Allium cepa

[Term]
id: BR:0000262
name: Gene Index - Pepper 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000335 ! Pepper

[Term]
id: BR:0000263
name: Gene Index - Petunia 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000340 ! Petunia

[Term]
id: BR:0000264
name: Gene Index - Pine 6.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000345 ! Pinus

[Term]
id: BR:0000265
name: Gene Index - Poplar 3.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000330 ! Populus

[Term]
id: BR:0000266
name: Gene Index - Potato 11.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000034 ! The Institute for Genomic Research - Solanum tuberosum
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000267
name: Gene Index - Rice 17.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000023 ! The Institute for Genomic Research - Oryza sativa
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000268
name: Gene Index - Rye 3.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000339 ! Secale cereale

[Term]
id: BR:0000269
name: Gene Index - Sorghum bicolor 8.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000343 ! Sorghum bicolor

[Term]
id: BR:0000270
name: Gene Index - Soybean 12.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000336 ! Glycine max

[Term]
id: BR:0000271
name: Gene Index - Spruce 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000327 ! Spruce

[Term]
id: BR:0000272
name: Gene Index - Sugarcane 2.1
def: "x" [ANN:thread]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000329 ! Sugarcane

[Term]
id: BR:0000273
name: Gene Index - Sunflower 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000326 ! Sunflower

[Term]
id: BR:0000274
name: Gene Index - Tall Fescue 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000342 ! Festuca arundinacea

[Term]
id: BR:0000275
name: Gene Index - Tobacco 3.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000346 ! Nicotiana tabacum

[Term]
id: BR:0000276
name: Gene Index - Tomato 11.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000325 ! Solanum lycopersicum

[Term]
id: BR:0000277
name: Gene Index - Triphysaria 1.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000331 ! Triphysaria

[Term]
id: BR:0000278
name: Gene Index - Wheat 10.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000022 ! The Institute for Genomic Research - Triticum aestivum
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000279
name: Gene Index - Cryptosporidium parvum 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000187 ! Alveolata
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000280
name: Gene Index - Dictyostelium discoideum 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000416 ! Dictyostelium discoideum

[Term]
id: BR:0000281
name: Gene Index - Eimeria tenella 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000187 ! Alveolata
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000282
name: Gene Index - Leishmania 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000311 ! Leishmania sp.

[Term]
id: BR:0000283
name: Gene Index - Neospora caninum 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000187 ! Alveolata
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000284
name: Gene Index - Plasmodium berghei 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000183 ! Plasmodium sp.
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000285
name: Gene Index - Plasmodium falciparum 8.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000054 ! The Institute for Genomic Research - Plasmodium Falciparum
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000286
name: Gene Index - Plasmodium vivax 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000056 ! The Institute for Genomic Research - Plasmodium vivax
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000287
name: Gene Index - Plasmodium yoelii 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000060 ! The Institute for Genomic Research - Plasmodium yoelii yoelii
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000288
name: Gene Index - Sarcocystis neurona 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000187 ! Alveolata
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000289
name: Gene Index - Trichomonas vaginalis 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000115 ! Trypanosoma sp.
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000290
name: Gene Index - Trypanosoma brucei 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000112 ! The Institute for Genomic Research - Trypanosoma brucei
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000291
name: Gene Index - Trypanosoma cruzi 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000118 ! The Institute for Genomic Research - Trypanosoma cruzi
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000292
name: Gene Index - Toxoplasma gondii 8.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000063 ! The Institute for Genomic Research - Toxoplasma gondii
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000293
name: Gene Index - Tetrahymena thermophila 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000021 ! The Institute for Genomic Research - Tetrahymena thermophila
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000294
name: Gene Index - Aspergillus flavus 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000394 ! Aspergillus flavus

[Term]
id: BR:0000295
name: Gene Index - Aspergillus nidulans 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000073 ! Aspergillus nidulans
is_a: BR:0000304 ! Gene Indices

[Term]
id: BR:0000296
name: Gene Index - Coccidioides posadasii 2.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000399 ! Coccidioides posadasii

[Term]
id: BR:0000297
name: Gene Index - Cryptococcus 7.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000400 ! Cryptococcus

[Term]
id: BR:0000298
name: Gene Index - Magnaporthe grisea 5.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000398 ! Magnaporthe grisea

[Term]
id: BR:0000299
name: Gene Index - Neurospora crassa 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000392 ! Neurospora crassa

[Term]
id: BR:0000300
name: Gene Index - Saccharomyces cerevisiae 4.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000396 ! Saccharomyces cerevisiae

[Term]
id: BR:0000301
name: Gene Index - Fusarium verticillioides 7.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000395 ! Fusarium verticillioides

[Term]
id: BR:0000302
name: Gene Index - Schizosaccharomyces pombe 3.0
def: "x" [ANN:thread, GOC:jic]
is_a: BR:0000304 ! Gene Indices
is_a: BR:0000393 ! Schizosaccharomyces pombe

[Term]
id: BR:0000303
name: Dana Farber Cancer Institute - Gene Indices
def: "This institute now houses TIGRs Gene Indices. " [GOC:jic]
relationship: part_of BR:0000305 ! Gene Index Consortium (ed)
relationship: part_of BR:0000307 ! Dana Farber Cancer Institute

[Term]
id: BR:0000304
name: Gene Indices
def: "Moved from TIGR" [GOC:jic]
is_a: BR:0000303 ! Dana Farber Cancer Institute - Gene Indices
is_a: BR:0000306 ! The Institute for Genomic Research - Gene Indices

[Term]
id: BR:0000305
name: Gene Index Consortium (ed)
is_a: BR:0000004 ! consortium

[Term]
id: BR:0000306
name: The Institute for Genomic Research - Gene Indices
is_a: BR:0000305 ! Gene Index Consortium (ed)
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000307
name: Dana Farber Cancer Institute
is_a: BR:0000151 ! Massachusetts

[Term]
id: BR:0000308
name: Entamoeba
relationship: part_of BR:0000184 ! Eukaryota

[Term]
id: BR:0000309
name: Fungi/Metazoa
relationship: part_of BR:0000184 ! Eukaryota

[Term]
id: BR:0000310
name: Mycetozoa
relationship: part_of BR:0000184 ! Eukaryota

[Term]
id: BR:0000311
name: Leishmania sp.
is_a: BR:0000186 ! Trypanosomatidae

[Term]
id: BR:0000312
name: Tetrahymena sp.
is_a: BR:0000187 ! Alveolata

[Term]
id: BR:0000313
name: Prokaryota
def: "I have not yet added TIGRs prokaryote genomes. " [GOC:jic]
relationship: part_of BR:0000002 ! All Taxa

[Term]
id: BR:0000314
name: Aquilegia
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000315
name: Hordeum vulgare subsp. vulgare
synonym: "two-rowed barley" EXACT []
is_a: BR:0000519 ! Liliopsida

[Term]
id: BR:0000316
name: Beta vulgaris subsp. vulgaris
synonym: "Sugar beet" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000317
name: Brassica napus
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000318
name: Chlamydo- monas reinhardtii
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000319
name: Theobroma cacao
synonym: "Cocao" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000320
name: Common Bean
def: "http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=p_vulgaris" [GOC:jic]
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000321
name: Gossypium hirsutum
synonym: "Cotton" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000322
name: Vitis vinifera
synonym: "Grape" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000323
name: Ice Plant
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000324
name: Lotus
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000325
name: Solanum lycopersicum
synonym: "Tomato" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000326
name: Sunflower
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000327
name: Spruce
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000328
name: Allium cepa
synonym: "onion" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000329
name: Sugarcane
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000330
name: Populus
synonym: "Poplar" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000331
name: Triphysaria
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000332
name: Carnegie Institution
def: "Department of Plant Biology\nCarnegie Institution\nStanford University\n260 Panama Street\nStanford, CA\n94305\n650/325-1521\n\n(TAIR also have connections at \nNCGR\nNational Center for Genome Resources\n2935 Rodeo Park Drive East\nSanta Fe, New Mexico 87505\nUSA\n\nand \n\nArabidopsis Biological Resource Center\nThe Ohio State University\nRightmire Hall\n1060 Carmack Road\nColumbus, OH 43210 USA)" [GOC:jic]
is_a: BR:0000135 ! California

[Term]
id: BR:0000333
name: Nicotiana benthamiana
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000334
name: The Institute for Genomic Research - Arabidopsis thaliana
def: "Annotation now passed to TAIR - no more annotation occurring at TIGR." [GOC:jic]
relationship: part_of BR:0000020 ! The Institute for Genomic Research
relationship: part_of BR:0000032 ! Arabidopsis thaliana annotation (Ed)

[Term]
id: BR:0000335
name: Pepper
def: "http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=pepper" [GOC:jic]
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000336
name: Glycine max
synonym: "Soybean" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000337
name: Aracyc
def: "TAIR also incorporate and pass on Aracyc annotations" [GOC:jic]
relationship: part_of BR:0000031 ! The Arabidopsis Information Resource

[Term]
id: BR:0000338
name: Onchocerca volvulus
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000339
name: Secale cereale
synonym: "Rye" EXACT []
is_a: BR:0000519 ! Liliopsida

[Term]
id: BR:0000340
name: Petunia
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000341
name: Medicago truncatula
is_a: BR:0000509 ! Medicago sp.

[Term]
id: BR:0000342
name: Festuca arundinacea
synonym: "Tall Fescue" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000343
name: Sorghum bicolor
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000344
name: Lettuce
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000345
name: Pinus
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000346
name: Nicotiana tabacum
synonym: "Tobacco" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000347
name: Gallus gallus
synonym: "Chicken" EXACT []
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000348
name: Astatotilapia burtoni
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000349
name: Bos taurus
synonym: "Cattle" EXACT []
synonym: "cow" EXACT []
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000350
name: Xenopus laevis
is_a: BR:0000373 ! Xenopus

[Term]
id: BR:0000351
name: Homo sapiens
synonym: "Human" EXACT []
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000352
name: Caenorhabditis elegans
is_a: BR:0000185 ! Nematoda

[Term]
id: BR:0000353
name: Danio rerio
synonym: "Zebrafish" EXACT []
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000354
name: Honey bee
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000355
name: Fugu
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000356
name: Rattus norvegicus
synonym: "rat" EXACT []
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000357
name: Mus musculus
synonym: "mouse" EXACT []
is_a: BR:0000591 ! Rodentia

[Term]
id: BR:0000358
name: Canis familiaris
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000359
name: Rhipicephalus appendiculatus
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000360
name: Atlantic salmon
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000361
name: Ciona intestinalis
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000362
name: Killifish
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000363
name: Porcine
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000364
name: Xenopus tropicalis
is_a: BR:0000373 ! Xenopus

[Term]
id: BR:0000365
name: Drosophila
is_a: BR:0000193 ! Diptera

[Term]
id: BR:0000366
name: Amblyomma variegatum
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000367
name: Mosquito
is_a: BR:0000193 ! Diptera

[Term]
id: BR:0000368
name: Catfish
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000369
name: Boophilus microplus
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000370
name: Ursus amercanus
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000371
name: Rainbow Trout
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000372
name: Haplochromis chilotes
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000373
name: Xenopus
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000374
name: Oryzias latipes
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000375
name: The Zebrafish Information Network - Danio rerio
def: "Annotate zebrafish (Danio rerio), though under Mike's newest proposal, we would\nbe responsible for GO annotation of all Danio species.  I'm not aware of any \nother Danio species that are being studied at the moment..though that doesn't\nmean they aren't out there.  We contribute both IEA and manual annotations.\n\nWe cover Danio rerio as completely as we can.  However, if another group were \ninterested in annotating Dr genes, we could discuss collaboration since their \ndata would probably channel through us.\n\nAt the moment we do not channel data derived outside of ZFIN.\n\nZebrafish Information Network\n5291 University of Oregon \nEugene, OR 97403-5291 USA" [ANN:thread, GOC:jic]
synonym: "Exhaustive manual" RELATED NEWSYNCAT []
synonym: "ZFIN - Danio rerio" EXACT []
is_a: BR:0000167 ! Oregon
is_a: BR:0000353 ! Danio rerio

[Term]
id: BR:0000376
name: Haplochromis sp. 'red tail sheller'
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000377
name: A-F
is_a: BR:0000129 ! U.S.

[Term]
id: BR:0000378
name: G-M
is_a: BR:0000129 ! U.S.

[Term]
id: BR:0000379
name: N-O
is_a: BR:0000129 ! U.S.

[Term]
id: BR:0000380
name: P-Z
is_a: BR:0000129 ! U.S.

[Term]
id: BR:0000381
name: University of Cambridge - Drosophila melanogaster
def: "Exhaustive manual GO annotation" [ANN:thread, GOC:jic]
synonym: "Exhaustive manual" RELATED NEWSYNCAT []
relationship: part_of BR:0000382 ! University of Cambridge
relationship: part_of BR:0000383 ! FlyBase Consortium - Drosophila melanogaster (Ed)

[Term]
id: BR:0000382
name: University of Cambridge
is_a: BR:0000130 ! U.K.

[Term]
id: BR:0000383
name: FlyBase Consortium - Drosophila melanogaster (Ed)
is_a: BR:0000004 ! consortium
is_a: BR:0000365 ! Drosophila

[Term]
id: BR:0000384
name: Institute for Genomic Research - Drosophila melanogaster
is_a: BR:0000365 ! Drosophila
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000385
name: Harvard - Drosophila melanogaster
def: "(Principal Investigator William Gelbart)" [GOC:jic]
relationship: part_of BR:0000383 ! FlyBase Consortium - Drosophila melanogaster (Ed)
relationship: part_of BR:0000389 ! Harvard University

[Term]
id: BR:0000386
name: Indiana - Drosophila melanogaster
def: "(PIs Thomas Kaufman and Kathleen Matthews)\n\nIndiana University \n1001 E. 3rd St.\nBloomington, IN 47405-7005" [GOC:jic]
is_a: BR:0000200 ! University of Indiana
relationship: part_of BR:0000383 ! FlyBase Consortium - Drosophila melanogaster (Ed)

[Term]
id: BR:0000387
name: Berkeley Drosophila Genome Project - Drosophila melanogaster
def: " (PI Gerry Rubin) \n\nBerkeley Drosophila Genome Project \nLawrence Berkeley National Lab \n1 Cyclotron Road Mailstop 64-121 \nBerkeley, CA 94720 \n\nNo GO annotation here" [GOC:jic]
relationship: part_of BR:0000383 ! FlyBase Consortium - Drosophila melanogaster (Ed)
relationship: part_of BR:0000388 ! Lawrence Berkeley National Lab

[Term]
id: BR:0000388
name: Lawrence Berkeley National Lab
is_a: BR:0000135 ! California

[Term]
id: BR:0000389
name: Harvard University
is_a: BR:0000151 ! Massachusetts

[Term]
id: BR:0000390
name: Rat Genome Database - Rattus norvegicus
def: "manual and electronic annotation of rat.\n'We are annotating all genes, but most of the annotations are based on\nabstracts  Thus on a gene basis there is complete coverage, but for each\ngene the coverage is not complete.  We welcome collaborations.'\nAlso channel electronic annotations from UniProt.\n\nRat Genome Database\nBioinformatics Research Center\nMedical College of Wisconsin\n8701 Watertown Plank Rd.\nMilwaukee, WI 53226\nTelephone : 414-456-8871" [ANN:thread, GOC:jic]
synonym: "Exhaustive manual" RELATED NEWSYNCAT []
is_a: BR:0000356 ! Rattus norvegicus
relationship: part_of BR:0000391 ! Medical College of Wisconsin

[Term]
id: BR:0000391
name: Medical College of Wisconsin
is_a: BR:0000179 ! Wisconsin

[Term]
id: BR:0000392
name: Neurospora crassa
is_a: BR:0000182 ! fungi

[Term]
id: BR:0000393
name: Schizosaccharomyces pombe
is_a: BR:0000182 ! fungi

[Term]
id: BR:0000394
name: Aspergillus flavus
is_a: BR:0000072 ! Aspergillus sp.

[Term]
id: BR:0000395
name: Fusarium verticillioides
is_a: BR:0000182 ! fungi

[Term]
id: BR:0000396
name: Saccharomyces cerevisiae
is_a: BR:0000182 ! fungi

[Term]
id: BR:0000397
name: Saccharomyces Genome Database - Saccharomyces cerevisiae
def: " Department of Genetics at the School of Medicine, Stanford University" [ANN:thread, GOC:jic]
synonym: "Exhaustive manual" RELATED NEWSYNCAT []
is_a: BR:0000396 ! Saccharomyces cerevisiae
relationship: part_of BR:0000401 ! Stanford University

[Term]
id: BR:0000398
name: Magnaporthe grisea
is_a: BR:0000182 ! fungi

[Term]
id: BR:0000399
name: Coccidioides posadasii
is_a: BR:0000182 ! fungi

[Term]
id: BR:0000400
name: Cryptococcus
is_a: BR:0000182 ! fungi

[Term]
id: BR:0000401
name: Stanford University
is_a: BR:0000135 ! California

[Term]
id: BR:0000402
name: Mouse Genome Database (MGD) and Gene Expression Database (GXD) - Mus musculus
def: "x" [ANN:thread]
synonym: "Exhaustive manual" RELATED NEWSYNCAT []
is_a: BR:0000357 ! Mus musculus
relationship: part_of BR:0000404 ! The Jackson Laboratory

[Term]
id: BR:0000403
name: The institute for Genomic Research - Mus musculus
is_a: BR:0000357 ! Mus musculus
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000404
name: The Jackson Laboratory
def: "The Jackson Laboratory\n600 Main Street\nBar Harbor, Maine 04609 USA\n207-288-6000 Main" [GOC:jic]
is_a: BR:0000149 ! Maine

[Term]
id: BR:0000405
name: WormBase - Caenorhabditis elegans
def: "Exhaustive manual" [ANN:thread, GOC:jic]
synonym: "Exhaustive manual" EXACT []
is_a: BR:0000352 ! Caenorhabditis elegans
relationship: part_of BR:0000406 ! California Institute of Technology

[Term]
id: BR:0000406
name: California Institute of Technology
synonym: "Caltech" EXACT []
is_a: BR:0000135 ! California

[Term]
id: BR:0000407
name: European Bioinformatics Institute
is_a: BR:0000130 ! U.K.

[Term]
id: BR:0000408
name: Gene Ontology Annotation
def: "Note: GOA also provides electronic annotation to all species with sequences submitted to the big databases at EBI, GenBank an DDBJ." [GOC:jic]
synonym: "GOA" EXACT []
is_a: BR:0000407 ! European Bioinformatics Institute

[Term]
id: BR:0000409
name: Gene Ontology Annotation - Mus musculus
def: "Manual" [ANN:thread, GOC:jic]
is_a: BR:0000357 ! Mus musculus
is_a: BR:0000408 ! Gene Ontology Annotation

[Term]
id: BR:0000410
name: Gene Ontology Annotation - Caenorhabditis elegans
def: "Manual" [ANN:thread, GOC:jic]
is_a: BR:0000352 ! Caenorhabditis elegans
is_a: BR:0000408 ! Gene Ontology Annotation

[Term]
id: BR:0000411
name: Gene Ontology Annotation - Homo sapiens
def: "Manual" [ANN:thread, GOC:jic]
is_a: BR:0000351 ! Homo sapiens
is_a: BR:0000408 ! Gene Ontology Annotation

[Term]
id: BR:0000412
name: Gene Ontology Annotation - Drosophila melanogaster
def: "Manual" [ANN:thread, GOC:jic]
is_a: BR:0000365 ! Drosophila
is_a: BR:0000408 ! Gene Ontology Annotation

[Term]
id: BR:0000413
name: Gene Ontology Annotation - Saccharomyces cerevisiae
def: "Manual" [ANN:thread, GOC:jic]
is_a: BR:0000396 ! Saccharomyces cerevisiae
is_a: BR:0000408 ! Gene Ontology Annotation

[Term]
id: BR:0000414
name: Gene Ontology Annotation - Rattus norvegicus
def: "Manual" [ANN:thread, GOC:jic]
is_a: BR:0000356 ! Rattus norvegicus
is_a: BR:0000408 ! Gene Ontology Annotation

[Term]
id: BR:0000415
name: Gene Ontology Annotation - Danio rerio
def: "Manual" [ANN:thread, GOC:jic]
is_a: BR:0000353 ! Danio rerio
is_a: BR:0000408 ! Gene Ontology Annotation

[Term]
id: BR:0000416
name: Dictyostelium discoideum
is_a: BR:0000310 ! Mycetozoa

[Term]
id: BR:0000417
name: DictyBase - Dictyostelium discoideum
def: "Exhaustive manual " [ANN:thread, GOC:jic]
synonym: "Exhaustive manual" RELATED NEWSYNCAT []
is_a: BR:0000416 ! Dictyostelium discoideum
is_a: BR:0000422 ! DictyBase

[Term]
id: BR:0000418
name: Northwestern University
def: "Northwestern University  633 Clark Street  Evanston, IL 60208\nEvanston: 847-491-3741  ChicaANN: 312-503-8649" [GOC:jic]
is_a: BR:0000143 ! Illinois

[Term]
id: BR:0000419
name: mentor group - Dictybase/Concordia University - Aspergillus niger
def: "\nPascale is working with some people on Aspergillus:\n13/12/05\n\nHi Jen,\n\nI am working with a group at Concordia University\nin Montreal doing annotations of ESTs from\nAspergillus niger, with particular focus on\nsecreted proteins. The PI on this project is\nAdrian Tsang (tsang@vax2.concordia.ca). We have\nannotated about 350 predicted proteins, the idea\nbeing to mostly annotate genes from which IDA\nannotations can be obtained. They also have ESTs\nfrom about 15 related species which we will\nprobably also annotate at some point.\n\nI hope that helps, let me know if you would like\nfurther information.\n\nPascale\n\n\nAdrian is the PI in charge of that project. That information\ngot buried in the first email. Maybe you should have that in you file though:\nContact person: Adrian Tsang\nemail : tsang@vax2.concordia.ca\n\nI can tell you a couple of word about progress. We have \nmanually annotated about 350 genes, mostly secreted enzymes.\nMost have ISS annotations from very related species, and some\nIDAs from published literature. What do you do from here?\n\nThanks, Pascale \n" [GOC:jic]
is_a: BR:0000092 ! Aspergillus niger
is_a: BR:0000423 ! Mentor group

[Term]
id: BR:0000420
name: Concordia University - Aspergillus niger
def: "x" [ANN:thread]
is_a: BR:0000419 ! mentor group - Dictybase/Concordia University - Aspergillus niger
relationship: part_of BR:0000425 ! Concordia University

[Term]
id: BR:0000421
name: DictyBase mentoring - Aspergillus niger
def: "Pascale Gaudet mentor" [GOC:jic]
is_a: BR:0000419 ! mentor group - Dictybase/Concordia University - Aspergillus niger
is_a: BR:0000422 ! DictyBase

[Term]
id: BR:0000422
name: DictyBase
relationship: part_of BR:0000418 ! Northwestern University

[Term]
id: BR:0000423
name: Mentor group
is_a: BR:0000001 ! Bioinformatics Resource Ontology

[Term]
id: BR:0000424
name: Canada
relationship: part_of BR:0000440 ! The Americas

[Term]
id: BR:0000425
name: Concordia University
def: "http://www.concordia.ca/\n\n1455 de Maisonneuve Blvd. W.\nMontreal, Quebec  H3G 1M8\nCanada" [GOC:jic]
is_a: BR:0000424 ! Canada

[Term]
id: BR:0000426
name: GeneDB Spombe - Schizosaccharomyces pombe
def: "database for the fission yeast Schizosaccharomyces pombe \n(part of the Pathogen Sequencing Unit at the Wellcome Trust Sanger Institute)\n\nManual supplemented with electronic\nFull text\nAnnotation is submitted to GO (and it is one of the MODs whose manual\nannotation is included in GOA)" [ANN:thread, GOC:jic]
is_a: BR:0000393 ! Schizosaccharomyces pombe
relationship: part_of BR:0000067 ! Sanger Centre

[Term]
id: BR:0000427
name: GeneDB for protozoa
relationship: part_of BR:0000067 ! Sanger Centre

[Term]
id: BR:0000428
name: GeneDB for protozoa - Plasmodium falciparum
def: "x" [ANN:thread]
is_a: BR:0000052 ! Plasmodium falciparum
is_a: BR:0000427 ! GeneDB for protozoa

[Term]
id: BR:0000429
name: GeneDB for protozoa - Leishmania major
def: "x" [ANN:thread]
is_a: BR:0000119 ! Leishmania major
is_a: BR:0000427 ! GeneDB for protozoa

[Term]
id: BR:0000430
name: GeneDB for protozoa - Trypanosoma brucei
alt_id: BR:0000431
synonym: "Sanger Centre - Trypansoma brucei" EXACT []
is_a: BR:0000427 ! GeneDB for protozoa
relationship: part_of BR:0000113 ! Trypanosoma brucei sequencing consortium

[Term]
id: BR:0000432
name: Tetrahymena Genome Database - Tetrahymena thermophila
def: "Manual and electronic GO annotation at TGD\n\nWork with Mike Cherry of SGD." [GOC:jic]
relationship: part_of BR:0000401 ! Stanford University
relationship: part_of BR:0000433 ! Tetrahymena thermophila sequencing and annotation consortium (Ed)

[Term]
id: BR:0000433
name: Tetrahymena thermophila sequencing and annotation consortium (Ed)
def: "x" [ANN:thread]
is_a: BR:0000004 ! consortium
is_a: BR:0000018 ! Tetrahymena thermophila

[Term]
id: BR:0000434
name: Candida Genome Database - Candida
def: "x" [ANN:thread]
is_a: BR:0000401 ! Stanford University
is_a: BR:0000435 ! Candida

[Term]
id: BR:0000435
name: Candida
is_a: BR:0000182 ! fungi

[Term]
id: BR:0000436
name: Agbase - Gallus gallus
def: "Funded to provide manual annotation for chicken. Non-exhaustive. " [ANN:thread, GOC:jic]
is_a: BR:0000347 ! Gallus gallus
relationship: part_of BR:0000437 ! Mississippi State University

[Term]
id: BR:0000437
name: Mississippi State University
def: "http://www.msstate.edu/\n\nMississippi State University\nMississippi State, MS 39762\nMain Telephone: 1-662-325-2323" [GOC:jic]
is_a: BR:0000154 ! Mississippi

[Term]
id: BR:0000438
name: TRAIT database - muscle
def: "n Muscle TRAIT you can find a collection of information about transcripts expressed in human skeletal, heart, blood and leukemia cells. Currently, about 7500 independent transcripts are annotated and can be searched for features, expression pattern and ontology.\n\nhttp://muscle.cribi.unipd.it/\n\nCRIBI, Universita di Padova, via Ugo Bassi 58/B, Padova, 35131 Italy." [ANN:thread, GOC:jic]
is_a: BR:0000624 ! muscle
relationship: part_of BR:0000443 ! CRIBI
relationship: part_of BR:0000444 ! mentor group - GOA/TRAIT - muscle

[Term]
id: BR:0000439
name: Europe
is_a: BR:0000019 ! location

[Term]
id: BR:0000440
name: The Americas
is_a: BR:0000019 ! location

[Term]
id: BR:0000441
name: Italy
relationship: part_of BR:0000439 ! Europe

[Term]
id: BR:0000442
name: University of Padua
def: "Universita di Padova, via Ugo Bassi 58/B, Padova, 35131 Italy." [GOC:jic]
is_a: BR:0000441 ! Italy

[Term]
id: BR:0000443
name: CRIBI
def: "CRIBI, Universita di Padova, via Ugo Bassi 58/B, Padova, 35131 Italy." [GOC:jic]
is_a: BR:0000442 ! University of Padua

[Term]
id: BR:0000444
name: mentor group - GOA/TRAIT - muscle
def: "Erika Feltrin visited the editorial office and GOA for a few months to learn annotation and content development in 2006. She is continuing to submit annotation to GOA and is developing terms." [GOC:jic]
is_a: BR:0000423 ! Mentor group
is_a: BR:0000624 ! muscle

[Term]
id: BR:0000445
name: Gene Ontology Annotation mentoring - TRAIT - muscle
is_a: BR:0000408 ! Gene Ontology Annotation
relationship: part_of BR:0000444 ! mentor group - GOA/TRAIT - muscle

[Term]
id: BR:0000446
name: Rice Genome Research Program(RGP) - Oryza sativa
alt_id: BR:0000447
synonym: "Rice Genome Research Program(RGP)" EXACT []
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000465 ! Rice Genome Research Program(RGP)

[Term]
id: BR:0000448
name: Howard Hughes Medical Institute
def: "http://www.hhmi.org/" [GOC:jic]
relationship: part_of BR:0000150 ! Maryland

[Term]
id: BR:0000449
name: Biological Information Research Center
synonym: "BIRC" EXACT []
relationship: part_of BR:0000005 ! Rice Annotation Project
relationship: part_of BR:0000150 ! Maryland

[Term]
id: BR:0000450
name: DNA Data Bank of Japan
synonym: "DDBJ" EXACT []
is_a: BR:0000531 ! Japan
relationship: part_of BR:0000005 ! Rice Annotation Project

[Term]
id: BR:0000451
name: Academia Sinica Plant Genome Center(ASPGC)
is_a: BR:0000466 ! Taiwan

[Term]
id: BR:0000452
name: Cold Spring Harbor Laboratory(CSHL)
is_a: BR:0000162 ! New York

[Term]
id: BR:0000453
name: Wisconsin Rice Genome Project(GCOW)
is_a: BR:0000179 ! Wisconsin

[Term]
id: BR:0000454
name: Plant Genome Initiative at Rutgers(PGIR)
is_a: BR:0000561 ! Rutgers - The State University of New Jersey

[Term]
id: BR:0000455
name: Asia
is_a: BR:0000019 ! location

[Term]
id: BR:0000456
name: John Innes Centre
is_a: BR:0000130 ! U.K.

[Term]
id: BR:0000457
name: National Center for Gene Research Chinese Academy of Sciences(NCGR)
is_a: BR:0000559 ! People's Republic of China (PRC)

[Term]
id: BR:0000458
name: Korea Rice Genome Research Program(KRGRP) - Oryza sativa
alt_id: BR:0000459
synonym: "Korea Rice Genome Research Program(KRGRP) - Oryza sativa" EXACT []
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000558 ! Myongji University

[Term]
id: BR:0000460
name: BRIGI - BRAZILIAN RICE GENOME INITIATIVE
is_a: BR:0000556 ! brazil

[Term]
id: BR:0000461
name: Genoscope
def: "http://www.cns.fr/" [GOC:jic]
is_a: BR:0000468 ! France

[Term]
id: BR:0000462
name: National Center for Genetic Engineering and Biotechnology(BIOTEC)
def: "http://www.biotec.or.th/biotechnology-en/index.asp" [GOC:jic]
is_a: BR:0000560 ! Thailand

[Term]
id: BR:0000463
name: Indian Initiative for Rice Genome Sequencing(IIRGS)
def: "http://www.genomeindia.org/rice/structural/about.htm" [GOC:jic]
is_a: BR:0000557 ! University of Delhi

[Term]
id: BR:0000464
name: Arizona Genomics Institute(AGI)
is_a: BR:0000133 ! Arizona

[Term]
id: BR:0000465
name: Rice Genome Research Program(RGP)
synonym: "Rice Genome Research Program(RGP)" EXACT []
is_a: BR:0000531 ! Japan

[Term]
id: BR:0000466
name: Taiwan
is_a: BR:0000455 ! Asia

[Term]
id: BR:0000467
name: South America
is_a: BR:0000440 ! The Americas

[Term]
id: BR:0000468
name: France
relationship: part_of BR:0000439 ! Europe

[Term]
id: BR:0000469
name: India
is_a: BR:0000019 ! location

[Term]
id: BR:0000470
name: Korea
is_a: BR:0000455 ! Asia

[Term]
id: BR:0000471
name: Bacteria
relationship: part_of BR:0000002 ! All Taxa

[Term]
id: BR:0000472
name: Proteobacteria
relationship: part_of BR:0000471 ! Bacteria

[Term]
id: BR:0000473
name: Pseudomonas aeruginosa
is_a: BR:0000472 ! Proteobacteria

[Term]
id: BR:0000474
name: PseudoCAP - Pseudomonas aeruginosa
def: "Providing a gene association file once a year or more often if possible." [ANN:thread, GOC:jic]
is_a: BR:0000473 ! Pseudomonas aeruginosa
relationship: part_of BR:0000476 ! Simon Fraser University - Burnaby Campus

[Term]
id: BR:0000475
name: Simon Fraser University
is_a: BR:0000424 ! Canada

[Term]
id: BR:0000476
name: Simon Fraser University - Burnaby Campus
def: "Burnaby, British Columbia, Canada" [GOC:jic]
is_a: BR:0000475 ! Simon Fraser University

[Term]
id: BR:0000477
name: IASMA - Vitis vinifera
def: "x" [ANN:thread]
is_a: BR:0000322 ! Vitis vinifera
is_a: BR:0000480 ! IASMA
relationship: part_of BR:0000478 ! mentor group - IASMA/GOA - Vitis vinifera

[Term]
id: BR:0000478
name: mentor group - IASMA/GOA - Vitis vinifera
is_a: BR:0000423 ! Mentor group

[Term]
id: BR:0000479
name: Gene Ontology Annotation mentoring - IASMA - Vitis vinifera
is_a: BR:0000408 ! Gene Ontology Annotation
relationship: part_of BR:0000478 ! mentor group - IASMA/GOA - Vitis vinifera

[Term]
id: BR:0000480
name: IASMA
synonym: "Istituto Agrario S. Michele all'Adige" EXACT []
is_a: BR:0000441 ! Italy

[Term]
id: BR:0000481
name: mentor group - E. coli Hub/TIGR - Escherichia coli
synonym: "mentor group - E. coli Hub/The Institute for Genomic Research - Escherichia coli" EXACT []
is_a: BR:0000423 ! Mentor group
is_a: BR:0000485 ! Escherichia coli

[Term]
id: BR:0000482
name: E. coli Hub - Escherichia coli
is_a: BR:0000481 ! mentor group - E. coli Hub/TIGR - Escherichia coli
relationship: part_of BR:0000484 ! Texas A&M University

[Term]
id: BR:0000483
name: The Institute for Genomic Research mentoring - Escherichia coli
is_a: BR:0000481 ! mentor group - E. coli Hub/TIGR - Escherichia coli
relationship: part_of BR:0000020 ! The Institute for Genomic Research

[Term]
id: BR:0000484
name: Texas A&M University
def: "http://www.tamu.edu/" [GOC:jic]
is_a: BR:0000173 ! Texas

[Term]
id: BR:0000485
name: Escherichia coli
def: "x" [GOC:jic]
relationship: part_of BR:0000471 ! Bacteria

[Term]
id: BR:0000486
name: Bombyx mori
synonym: "Silkworm" EXACT []
is_a: BR:0000192 ! Insecta

[Term]
id: BR:0000487
name: CSIRO - Bombyx mori
is_a: BR:0000490 ! Bombyx mori annotation consortium (Ed)
relationship: part_of BR:0000489 ! CSIRO

[Term]
id: BR:0000488
name: Australia
is_a: BR:0000019 ! location

[Term]
id: BR:0000489
name: CSIRO
synonym: "Commonwealth Scientific and Industrial Research Organisation" EXACT []
is_a: BR:0000488 ! Australia

[Term]
id: BR:0000490
name: Bombyx mori annotation consortium (Ed)
def: "x" [ANN:thread]
is_a: BR:0000004 ! consortium
is_a: BR:0000486 ! Bombyx mori

[Term]
id: BR:0000491
name: Beijing Genomics Institute - Bombyx mori
is_a: BR:0000490 ! Bombyx mori annotation consortium (Ed)
relationship: part_of BR:0000494 ! Beijing Genomics Institute - Chinese Academy of Sciences

[Term]
id: BR:0000492
name: China
is_a: BR:0000019 ! location

[Term]
id: BR:0000493
name: Chinese Academy of Sciences
is_a: BR:0000492 ! China

[Term]
id: BR:0000494
name: Beijing Genomics Institute - Chinese Academy of Sciences
relationship: part_of BR:0000493 ! Chinese Academy of Sciences

[Term]
id: BR:0000495
name: Joint Genome Institute - Eukaryotic annotation group
def: "x" [ANN:thread]
is_a: BR:0000184 ! Eukaryota
relationship: part_of BR:0000110 ! Joint Genome Institute

[Term]
id: BR:0000496
name: Nematode sp.
is_a: BR:0000185 ! Nematoda

[Term]
id: BR:0000497
name: NEMATODE NET. - 9 Nematode sp.
def: "\nThey have ISS for some 9 nematode species. MA contacted them see [5] and they\nagree in principle. See http://www.nematode.net/.\n\nMakedonka Dautova Mitreva, Ph.D. (link)\nGroup Leader, Parasitic Nematode ESTs\nmmitreva@watson.wustl.edu\n" [ANN:thread]
is_a: BR:0000496 ! Nematode sp.
relationship: part_of BR:0000069 ! University of Washington

[Term]
id: BR:0000498
name: PlantGDB - various plants
def: "The have automated EST annotations." [ANN:thread]
is_a: BR:0000004 ! consortium
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000499
name: PlantGDB - Iowa State University
def: "PI: Volker Brendel, " [GOC:jic]
is_a: BR:0000498 ! PlantGDB - various plants
is_a: BR:0000517 ! Iowa State University

[Term]
id: BR:0000500
name: PlantGDB - University of South Dakota
def: "Co-PI: Carol Lushbough" [GOC:jic]
is_a: BR:0000171 ! South Dakota
is_a: BR:0000498 ! PlantGDB - various plants

[Term]
id: BR:0000501
name: PlantGDB - USDA-ARS and Iowa State University
def: "Co-PI: Carolyn Lawrence\n\n(one geographical location)" [GOC:jic]
is_a: BR:0000498 ! PlantGDB - various plants
is_a: BR:0000517 ! Iowa State University
relationship: part_of BR:0000528 ! USDA

[Term]
id: BR:0000502
name: Legume Information System
def: "www.comparative-legumes.org" [ANN:thread, GOC:jic]
is_a: BR:0000004 ! consortium
is_a: BR:0000514 ! National Center for Genome Resources

[Term]
id: BR:0000503
name: Legume Information System - Glycine max
def: "genetic maps imported from Soybase by courtesy of Dr. David Grant\ngenetic and physical maps imported from SIU Soybean Genome by courtesy of Dr. David Lightfoot" [GOC:jic]
is_a: BR:0000336 ! Glycine max
is_a: BR:0000502 ! Legume Information System

[Term]
id: BR:0000504
name: Legume Information System - Medicago truncatula
def: "genetic and physical maps imported from Mt Genome at UC Davis by courtesy of Dr. Doug Cook\ngenetic maps imported from medicago.org by courtesy of Dr. Nevin Young" [GOC:jic]
is_a: BR:0000341 ! Medicago truncatula
is_a: BR:0000502 ! Legume Information System

[Term]
id: BR:0000505
name: Legume Information System - Medicago sativa
def: "genetic maps kindly supplied by Dr. Mary Sledge and Dr. Bernadette Julier" [GOC:jic]
is_a: BR:0000502 ! Legume Information System
is_a: BR:0000510 ! Medicago sativa

[Term]
id: BR:0000506
name: Legume Information System - Phaseolus vulgaris
def: "genetic maps entered from several publications by courtesy of Dr. David Grant" [GOC:jic]
is_a: BR:0000502 ! Legume Information System
is_a: BR:0000512 ! Phaseolus vulgaris

[Term]
id: BR:0000507
name: Legume Information System - Arachis hypogaea
def: "genetic maps from several groups, kindly supplied by Dr. Mark Burow" [GOC:jic]
is_a: BR:0000502 ! Legume Information System
is_a: BR:0000511 ! Arachis hypogaea

[Term]
id: BR:0000508
name: Legume Information System - Pisum sativum
def: "genetic maps kindly supplied by Dr. Noel Ellis and Dr. Norman Weeden" [GOC:jic]
is_a: BR:0000502 ! Legume Information System
is_a: BR:0000513 ! Pisum sativum

[Term]
id: BR:0000509
name: Medicago sp.
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000510
name: Medicago sativa
is_a: BR:0000509 ! Medicago sp.

[Term]
id: BR:0000511
name: Arachis hypogaea
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000512
name: Phaseolus vulgaris
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000513
name: Pisum sativum
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000514
name: National Center for Genome Resources
def: "National Center for Genome Resources\n2935 Rodeo Park Drive East\nSanta Fe, New Mexico 87505\nUSA" [GOC:jic]
is_a: BR:0000161 ! New Mexico

[Term]
id: BR:0000515
name: <new term>
is_obsolete: true

[Term]
id: BR:0000516
name: BarleyBase - Iowa State University - Hordeum vulgare subsp. vulgare
def: "The Barleybase is generating GO annotation based on the microarrays for Barley \nand I presume is also set up to initiate some of the work on other cereal crops\nas well. \n\nRoger Wise <rpwise@iastate.edu>\nJulie Dickerson <julied@iastate.edu>\n\nhttp://www.barleybase.org/" [ANN:thread, GOC:jic]
is_a: BR:0000315 ! Hordeum vulgare subsp. vulgare
is_a: BR:0000517 ! Iowa State University

[Term]
id: BR:0000517
name: Iowa State University
is_a: BR:0000145 ! Iowa

[Term]
id: BR:0000518
name: GrainGenes - various cereals
is_a: BR:0000526 ! GrainGenes East: Ithaca (Cornell)
is_a: BR:0000527 ! GrainGenes West: Albany

[Term]
id: BR:0000519
name: Liliopsida
synonym: "monocotyledon" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000520
name: GrainGenes - Triticum aestivum
def: "x" [ANN:thread]
synonym: "GrainGenes - Wheat" EXACT []
is_a: BR:0000014 ! Triticum aestivum
is_a: BR:0000518 ! GrainGenes - various cereals

[Term]
id: BR:0000521
name: GrainGenes - Hordeum vulgare subsp. vulgare
def: "x" [ANN:thread]
synonym: "GrainGenes - Barley" EXACT []
is_a: BR:0000315 ! Hordeum vulgare subsp. vulgare
is_a: BR:0000518 ! GrainGenes - various cereals

[Term]
id: BR:0000522
name: GrainGenes - Avena sativa
def: "x" [ANN:thread]
synonym: "Grain Genes - Oat" EXACT []
is_a: BR:0000518 ! GrainGenes - various cereals
is_a: BR:0000524 ! Avena sativa

[Term]
id: BR:0000523
name: GrainGenes - Secale cereale
def: "x" [ANN:thread]
synonym: "GrainGenes - Rye" EXACT []
is_a: BR:0000339 ! Secale cereale
is_a: BR:0000518 ! GrainGenes - various cereals

[Term]
id: BR:0000524
name: Avena sativa
synonym: "oat" EXACT []
is_a: BR:0000519 ! Liliopsida

[Term]
id: BR:0000525
name: <new term>
is_obsolete: true

[Term]
id: BR:0000526
name: GrainGenes East: Ithaca (Cornell)
is_a: BR:0000533 ! Cornell University

[Term]
id: BR:0000527
name: GrainGenes West: Albany
relationship: part_of BR:0000529 ! Western Regional Research Center

[Term]
id: BR:0000528
name: USDA
is_a: BR:0000129 ! U.S.

[Term]
id: BR:0000529
name: Western Regional Research Center
is_a: BR:0000135 ! California
is_a: BR:0000528 ! USDA

[Term]
id: BR:0000530
name: OryzaBase - Oryza sativa
relationship: part_of BR:0000011 ! National Institute of Genetics - Oryza sativa
relationship: part_of BR:0000532 ! mentor group - Gramene/OryzaBase

[Term]
id: BR:0000531
name: Japan
is_a: BR:0000019 ! location

[Term]
id: BR:0000532
name: mentor group - Gramene/OryzaBase
is_a: BR:0000423 ! Mentor group

[Term]
id: BR:0000533
name: Cornell University
is_a: BR:0000162 ! New York

[Term]
id: BR:0000534
name: University of California - Riverside
relationship: part_of BR:0000208 ! University of California

[Term]
id: BR:0000535
name: HarvEST
def: "HarvEST is principally EST database-viewing software that emphasizes gene function and is oriented to comparative genomics and the design of oligonucleotides, in support of activities such as microarray content design, function annotation, physical and genetic mapping. \n\nI haven't had contact with these people yet but they were recommended. \nhttp://harvest.ucr.edu/" [GOC:jic]
relationship: part_of BR:0000534 ! University of California - Riverside

[Term]
id: BR:0000536
name: HarvEST Barley
def: "HarvEST is principally EST database-viewing software that emphasizes gene function and is oriented to comparative genomics and the design of oligonucleotides, in support of activities such as microarray content design, function annotation, physical and genetic mapping. " [GOC:jic]
is_a: BR:0000315 ! Hordeum vulgare subsp. vulgare
relationship: part_of BR:0000535 ! HarvEST

[Term]
id: BR:0000537
name: HarvEST Coffea
def: "HarvEST is principally EST database-viewing software that emphasizes gene function and is oriented to comparative genomics and the design of oligonucleotides, in support of activities such as microarray content design, function annotation, physical and genetic mapping. " [GOC:jic]
is_a: BR:0000542 ! Coffea
relationship: part_of BR:0000535 ! HarvEST

[Term]
id: BR:0000538
name: HarvEST Cowpea
def: "HarvEST is principally EST database-viewing software that emphasizes gene function and is oriented to comparative genomics and the design of oligonucleotides, in support of activities such as microarray content design, function annotation, physical and genetic mapping. " [GOC:jic]
is_a: BR:0000543 ! Vigna unguiculata
relationship: part_of BR:0000535 ! HarvEST

[Term]
id: BR:0000539
name: HarvEST Soybean
def: "HarvEST is principally EST database-viewing software that emphasizes gene function and is oriented to comparative genomics and the design of oligonucleotides, in support of activities such as microarray content design, function annotation, physical and genetic mapping. " [GOC:jic]
is_a: BR:0000336 ! Glycine max
relationship: part_of BR:0000535 ! HarvEST

[Term]
id: BR:0000540
name: HarvEST Rice
def: "HarvEST is principally EST database-viewing software that emphasizes gene function and is oriented to comparative genomics and the design of oligonucleotides, in support of activities such as microarray content design, function annotation, physical and genetic mapping. " [GOC:jic]
is_a: BR:0000003 ! Oryza sativa
relationship: part_of BR:0000535 ! HarvEST

[Term]
id: BR:0000541
name: HarvEST Wheat
def: "HarvEST is principally EST database-viewing software that emphasizes gene function and is oriented to comparative genomics and the design of oligonucleotides, in support of activities such as microarray content design, function annotation, physical and genetic mapping. " [GOC:jic]
is_a: BR:0000014 ! Triticum aestivum
relationship: part_of BR:0000535 ! HarvEST

[Term]
id: BR:0000542
name: Coffea
synonym: "coffee" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000543
name: Vigna unguiculata
synonym: "Cowpea" EXACT []
is_a: BR:0000181 ! Viridiplantae

[Term]
id: BR:0000544
name: The Institute for Genomic Research(TIGR) - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project

[Term]
id: BR:0000545
name: National Center for Gene Research Chinese Academy of Sciences(NCGR) - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000457 ! National Center for Gene Research Chinese Academy of Sciences(NCGR)

[Term]
id: BR:0000546
name: Arizona Genomics Institute(AGI) - Oryza sativa
is_obsolete: true

[Term]
id: BR:0000547
name: Cold Spring Harbor Laboratory(CSHL) - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000452 ! Cold Spring Harbor Laboratory(CSHL)

[Term]
id: BR:0000548
name: Plant Genome Initiative at Rutgers(PGIR) - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000454 ! Plant Genome Initiative at Rutgers(PGIR)

[Term]
id: BR:0000549
name: Genoscope - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000461 ! Genoscope

[Term]
id: BR:0000550
name: Academia Sinica Plant Genome Center(ASPGC) - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000451 ! Academia Sinica Plant Genome Center(ASPGC)
relationship: part_of BR:0000464 ! Arizona Genomics Institute(AGI)

[Term]
id: BR:0000551
name: Indian Initiative for Rice Genome Sequencing(IIRGS) - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000463 ! Indian Initiative for Rice Genome Sequencing(IIRGS)

[Term]
id: BR:0000552
name: National Center for Genetic Engineering and Biotechnology(BIOTEC) - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000462 ! National Center for Genetic Engineering and Biotechnology(BIOTEC)

[Term]
id: BR:0000553
name: Wisconsin Rice Genome Project(GCOW) - Oryza sativa
is_a: BR:0000453 ! Wisconsin Rice Genome Project(GCOW)
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project

[Term]
id: BR:0000554
name: John Innes Centre - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000456 ! John Innes Centre

[Term]
id: BR:0000555
name: BRIGI - BRAZILIAN RICE GENOME INITIATIVE - Oryza sativa
relationship: part_of BR:0000007 ! International Rice Genome Sequencing Project
relationship: part_of BR:0000460 ! BRIGI - BRAZILIAN RICE GENOME INITIATIVE

[Term]
id: BR:0000556
name: brazil
is_a: BR:0000467 ! South America

[Term]
id: BR:0000557
name: University of Delhi
is_a: BR:0000469 ! India

[Term]
id: BR:0000558
name: Myongji University
is_a: BR:0000470 ! Korea

[Term]
id: BR:0000559
name: People's Republic of China (PRC)
is_a: BR:0000455 ! Asia

[Term]
id: BR:0000560
name: Thailand
is_a: BR:0000455 ! Asia

[Term]
id: BR:0000561
name: Rutgers - The State University of New Jersey
def: "http://www.rutgers.edu/" [GOC:jic]
is_a: BR:0000160 ! New Jersey

[Term]
id: BR:0000562
name: National Institute of Advanced Industrial Science and Technology
synonym: "AIST" EXACT []
is_a: BR:0000531 ! Japan
relationship: part_of BR:0000005 ! Rice Annotation Project

[Term]
id: BR:0000563
name: National Institute of Agrobiological Sciences
synonym: "NIAS" EXACT []
is_a: BR:0000531 ! Japan
relationship: part_of BR:0000005 ! Rice Annotation Project

[Term]
id: BR:0000564
name: Cyanobacteria
relationship: part_of BR:0000471 ! Bacteria

[Term]
id: BR:0000565
name: Kazusa DNA Research Institute
is_a: BR:0000531 ! Japan

[Term]
id: BR:0000566
name: Kazusa - CyanoBase
alt_id: BR:0000567
def: " The genome database for cyanobacteria and photosynthetic bacteria; Synechocystis sp. strain PCC 6803, Anabaena sp. PCC 7120, Thermosynechococcus elongatus BP-1 and a green sulfur bacteria, Chlorobium tepidum TLS. . " [GOC:jic]
synonym: "Kazusa - Cyanobacteria" EXACT []
is_a: BR:0000564 ! Cyanobacteria
is_a: BR:0000565 ! Kazusa DNA Research Institute

[Term]
id: BR:0000568
name: Kazusa - RhizoBase
def: " The genome database for rhizobia; Mesorhizobium loti MAFF303099, Bradyrhizobium japonicum USDA110, Sinorhizobium meliloti 1021 and Rhizobium sp. NGR234 symbiotic plasmid and M. loti R7A symbiosis island. . " [GOC:jic]
is_a: BR:0000565 ! Kazusa DNA Research Institute
is_a: BR:0000590 ! Rhizobiales

[Term]
id: BR:0000569
name: Kazusa - Genome Sequencing Project - Lotus japonicus
alt_id: BR:0000570
def: " A model legume Lotus japonicus genome sequence project information . " [GOC:jic]
synonym: "Kazusa - Lotus japonicus" EXACT []
is_a: BR:0000584 ! Kazusa DNA Research Institute - Lotus japonicus

[Term]
id: BR:0000571
name: Kazusa DNA Research Institute - Arabidopsis thaliana
is_a: BR:0000028 ! Arabidopsis thaliana
is_a: BR:0000565 ! Kazusa DNA Research Institute

[Term]
id: BR:0000572
name: Kazusa - Chlamydomonas EST Index
def: " Chlamydomonas reinhardtii EST dataset . " [GOC:jic]
is_a: BR:0000318 ! Chlamydo- monas reinhardtii
is_a: BR:0000565 ! Kazusa DNA Research Institute

[Term]
id: BR:0000573
name: Kazusa - Lotus japonicus EST Index
def: " Lotus japonicus(Miyakogusa) EST dataset . " [GOC:jic]
is_a: BR:0000584 ! Kazusa DNA Research Institute - Lotus japonicus

[Term]
id: BR:0000574
name: Kazusa - Arabidopsis EST Index
def: " Arabidopsis thaliana EST dataset . " [GOC:jic]
is_a: BR:0000571 ! Kazusa DNA Research Institute - Arabidopsis thaliana

[Term]
id: BR:0000575
name: Kazusa - Porphyra EST Index -  Porphyra yezoensis
def: " Porphyra yezoensis(Susabi nori) EST dataset . " [GOC:jic]
is_a: BR:0000565 ! Kazusa DNA Research Institute
is_a: BR:0000589 ! Porphyra yezoensis

[Term]
id: BR:0000576
name: Kazusa - Tomato EST Index - Solanum lycopersicum
def: " Solanum lycopersicum(Tomato) EST dataset . " [GOC:jic]
is_a: BR:0000585 ! Kazusa DNA Research Institute - Solanum lycopersicum

[Term]
id: BR:0000577
name: Kazusa - KATANA - Arabidopsis thaliana
def: " Arabidopsis thaliana Integrated Database . " [GOC:jic]
is_a: BR:0000571 ! Kazusa DNA Research Institute - Arabidopsis thaliana

[Term]
id: BR:0000578
name: Kazusa - KaPPA-View -  Arabidopsis thaliana
def: " Arabidopsis thaliana Metabolic Pathway Database . " [GOC:jic]
is_a: BR:0000571 ! Kazusa DNA Research Institute - Arabidopsis thaliana

[Term]
id: BR:0000579
name: Kazusa - MiBASE -  Solanum lycopersicum
def: " Solanum lycopersicum(Tomato) EST and Unigene database . " [GOC:jic]
is_a: BR:0000585 ! Kazusa DNA Research Institute - Solanum lycopersicum

[Term]
id: BR:0000580
name: Kazusa - KaFTom -  Solanum lycopersicum
def: " Solanum lycopersicum(Tomato) Full-length sequence(HTC) and EST database . " [GOC:jic]
is_a: BR:0000585 ! Kazusa DNA Research Institute - Solanum lycopersicum

[Term]
id: BR:0000581
name: Kazusa - HUGE - Homo sapiens
def: " Database of human unidentified gene-encoded large proteins . " [GOC:jic]
is_a: BR:0000351 ! Homo sapiens
is_a: BR:0000565 ! Kazusa DNA Research Institute

[Term]
id: BR:0000582
name: Kazusa - NEDO(Kazusa)
def: " Database of FLJ cDNA-encoded large proteins . " [GOC:jic]
is_obsolete: true

[Term]
id: BR:0000583
name: Kazusa - ROUGE - rodent
def: " Database of rodent unidentified gene-encoded large proteins . " [GOC:jic]
is_a: BR:0000565 ! Kazusa DNA Research Institute
is_a: BR:0000591 ! Rodentia

[Term]
id: BR:0000584
name: Kazusa DNA Research Institute - Lotus japonicus
is_a: BR:0000324 ! Lotus
is_a: BR:0000565 ! Kazusa DNA Research Institute

[Term]
id: BR:0000585
name: Kazusa DNA Research Institute - Solanum lycopersicum
is_a: BR:0000041 ! Solanum tuberosum
is_a: BR:0000565 ! Kazusa DNA Research Institute

[Term]
id: BR:0000586
name: Rhodophyta
relationship: part_of BR:0000184 ! Eukaryota

[Term]
id: BR:0000587
name: Kazusa - KOP
def: " Database of human protein expression clones (Flexi ORF clones). . " [GOC:jic]
is_obsolete: true

[Term]
id: BR:0000588
name: Kazusa - Mouse DNA Microarray
def: " Database of mouse DNA Microarray . " [GOC:jic]
is_a: BR:0000357 ! Mus musculus
is_a: BR:0000565 ! Kazusa DNA Research Institute

[Term]
id: BR:0000589
name: Porphyra yezoensis
is_a: BR:0000586 ! Rhodophyta

[Term]
id: BR:0000590
name: Rhizobiales
relationship: part_of BR:0000471 ! Bacteria

[Term]
id: BR:0000591
name: Rodentia
is_a: BR:0000212 ! Metazoa

[Term]
id: BR:0000592
name: Bioinformatics resource focus
is_a: BR:0000001 ! Bioinformatics Resource Ontology

[Term]
id: BR:0000593
name: species independent focus
is_a: BR:0000592 ! Bioinformatics resource focus

[Term]
id: BR:0000594
name: metabolism
is_a: BR:0000608 ! biological_process

[Term]
id: BR:0000595
name: MetaCyc
is_a: BR:0000002 ! All Taxa
is_a: BR:0000594 ! metabolism
relationship: part_of BR:0000332 ! Carnegie Institution
relationship: part_of BR:0000596 ! SRI International

[Term]
id: BR:0000596
name: SRI International
is_a: BR:0000135 ! California

[Term]
id: BR:0000597
name: Germany
relationship: part_of BR:0000439 ! Europe

[Term]
id: BR:0000598
name: Cologne University BioInformatics Center
def: "http://www.cubic.uni-koeln.de/" [GOC:jic]
is_a: BR:0000597 ! Germany

[Term]
id: BR:0000599
name: BRENDA - The Comprehensive Enzyme Information System
def: "http://www.brenda.uni-koeln.de/" [GOC:jic]
is_a: BR:0000002 ! All Taxa
is_a: BR:0000598 ! Cologne University BioInformatics Center
is_a: BR:0000600 ! enzymes

[Term]
id: BR:0000600
name: enzymes
is_a: BR:0000608 ! biological_process

[Term]
id: BR:0000601
name: GermOnline
def: "http://www.germonline.org/index.html" [ANN:thread, GOC:jic]
is_a: BR:0000002 ! All Taxa
is_a: BR:0000605 ! community annotation
is_a: BR:0000606 ! cell cycle
is_a: BR:0000607 ! gametogenesis
relationship: part_of BR:0000604 ! Biozentrum

[Term]
id: BR:0000602
name: Switzerland
relationship: part_of BR:0000439 ! Europe

[Term]
id: BR:0000603
name: University of Basel
def: "http://www.unibas.ch/index.cfm?cache_use=0" [GOC:jic]
is_a: BR:0000602 ! Switzerland

[Term]
id: BR:0000604
name: Biozentrum
def: "http://www.biozentrum.unibas.ch/" [GOC:jic]
is_a: BR:0000603 ! University of Basel

[Term]
id: BR:0000605
name: community annotation
is_a: BR:0000593 ! species independent focus

[Term]
id: BR:0000606
name: cell cycle
is_a: BR:0000608 ! biological_process

[Term]
id: BR:0000607
name: gametogenesis
is_a: BR:0000608 ! biological_process

[Term]
id: BR:0000608
name: biological_process
is_a: BR:0000593 ! species independent focus

[Term]
id: BR:0000609
name: BeeBase - The Honey Bee Genome Database
def: "http://racerx00.tamu.edu/bee_resources.html" [GOC:jic]
is_a: BR:0000354 ! Honey bee
relationship: part_of BR:0000484 ! Texas A&M University

[Term]
id: BR:0000610
name: RFAM - RNA families database of alignments and CMs
def: "http://www.sanger.ac.uk/Software/Rfam/\n\nRfam is a collection of multiple sequence alignments and covariance models covering many common non-coding RNA families. The main use of Rfam is as a source of RNA multiple alignments with consensus secondary structure annotation in a consistent format. In conjunction with the Infernal software package, Rfam covariance models (CMs) can be used to search genomes or other DNA sequence databases for homologs to known structural RNA families." [GOC:jic]
is_a: BR:0000002 ! All Taxa
is_a: BR:0000612 ! RNA
relationship: part_of BR:0000067 ! Sanger Centre
relationship: part_of BR:0000611 ! Janelia Farm Research Campus

[Term]
id: BR:0000611
name: Janelia Farm Research Campus
relationship: part_of BR:0000448 ! Howard Hughes Medical Institute

[Term]
id: BR:0000612
name: RNA
is_a: BR:0000593 ! species independent focus

[Term]
id: BR:0000613
name: mobile elements
is_a: BR:0000593 ! species independent focus

[Term]
id: BR:0000614
name: ACLAME - A CLAssification of genetic Mobile Elements
def: "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons. In addition to provide information on the full genomes and genetic entities, it aims at building a comprehensive classification of the functional modules of MGE's at the protein, gene, and higher levels.\n\nhttp://aclame.ulb.ac.be/" [GOC:jic]
is_a: BR:0000002 ! All Taxa
is_a: BR:0000613 ! mobile elements
is_a: BR:0000615 ! Belgium

[Term]
id: BR:0000615
name: Belgium
relationship: part_of BR:0000439 ! Europe

[Term]
id: BR:0000616
name: Arachnida
is_a: BR:0000191 ! Arthropoda

[Term]
id: BR:0000617
name: Acanthoscurria gomesiana
def: "A tarantula spider" [Taxon ID:115339]
is_a: BR:0000616 ! Arachnida

[Term]
id: BR:0000618
name: Discovery of immune-related genes expressed in hemocytes of the tarantula spider Acanthoscurria gomesiana.
def: "PMID: 16386302" [GOC:jic]
is_a: BR:0000617 ! Acanthoscurria gomesiana
relationship: part_of BR:0000619 ! Universidade de So Paulo

[Term]
id: BR:0000619
name: Universidade de So Paulo
is_a: BR:0000556 ! brazil

[Term]
id: BR:0000620
name: Bejing Genomics Institute
is_a: BR:0000492 ! China

[Term]
id: BR:0000621
name: LocustDB
def: "http://locustdb.genomics.org.cn/" [GOC:jic]
is_a: BR:0000623 ! Locusta migratoria
relationship: part_of BR:0000620 ! Bejing Genomics Institute

[Term]
id: BR:0000622
name: Pterygota
is_a: BR:0000192 ! Insecta

[Term]
id: BR:0000623
name: Locusta migratoria
def: "migratory locust" [GOC:jic]
is_a: BR:0000622 ! Pterygota

[Term]
id: BR:0000624
name: muscle
is_a: BR:0000593 ! species independent focus

[Term]
id: BR:0000625
name: VitisBase
def: "This is Giorgio Valle's group with Erika Feltrin as head curator, working as part of the effort to annotate grape as part of the franco-italian grape sequencing project.\n\nDue to start January 2008.\n\nThe databse name is not yet confirmed, but the rest is confirmed as the plan for next year." [GOC:jid]
is_a: BR:0000322 ! Vitis vinifera
relationship: part_of BR:0000443 ! CRIBI
relationship: part_of BR:0000626 ! Franco-Italian Grape Sequencing Consortium

[Term]
id: BR:0000626
name: Franco-Italian Grape Sequencing Consortium
def: "http://www.cns.fr/externe/English/Projets/Projet_ML/projet.html#constitution" [GOC:jid]
is_a: BR:0000004 ! consortium

[Typedef]
id: part_of
name: part of
is_transitive: true