GO Monthly Release Notes for October 2007 ======================== Generated on Thu Nov 1 15:44:08 2007 Files used: gene_ontology.obo OLD: version 4.322, 29:09:2007 19:30 NEW: version , goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1100957 Out of Date organismal morphogenesis 1237306 Fixed ubiquitin conjugating/ligase activity 1337453 Fixed term merge?: de novo protein folding/cotranslational 1465845 Fixed presynaptic active zone vs. active zone presynaptic PM 1572258 Fixed children of GO:0009615: response to virus 1600457 Accepted rg: positive regulation of interleukin-2 production 1601087 Accepted Regulation terms for oligomerization 1619099 None definition of 'photosystem I assembly' 1653166 Accepted photosynthetic water oxidation. 1666307 Fixed problems with GO:0015450 protein translocase activity 1669585 Works For Me ubiquitin conjugating/ligase activity 1698959 Works For Me New: Rab GTPase regulator activity, PMID: 10329441 1708056 Works For Me phosphoprotein phosphatase terms 1710466 Fixed GO and Enzyme classification 1740359 Works For Me heterophil degranulation 1757511 Accepted transmembrane transporter process 1801232 Works For Me NTR: Microsomal membrane 1803319 None NTR: Stereocilium membrane 1803326 Accepted subapical vesicle 1803383 None NTR: Cilium membrane 1803653 Fixed lateral line nerve development terms 1805571 Works For Me RG: GEM membrane fraction 1805582 Accepted BCR translocation 1805786 Accepted oxalic acid catabolism function and process terms 1805963 None Children of GO:0044429 ! mitochondrial part 1806426 Accepted FAD transporter activity/ missing parent 1806427 Accepted coenzyme A transporter activity/ mp/term name 1806438 Accepted urea transporter activity / mp /changeterm name 1806441 Accepted pyridoxal /pyridoxamine/pyridoxine transporters 1806838 Accepted quick: add synonyms replication fork associated 1807056 Later mp:ATP hydrolysis coupled proton transport 1807806 Fixed GO:0005750, GO:0045285 ubiquinol-cytochrome-c reductase 1808068 Accepted receptor serine/threonine kinase binding 1808234 Accepted transcription activator binding 1808267 Accepted new terms and/or parentage under GO:7005:mt org and biogen 1808323 Fixed response to corticosteroid stimulus children terms 1809814 None Ref. Genome: new terms for limb bud development 1810389 Works For Me ntr: levan biosynthetic process 1810894 Accepted membrane protein proteolysis 1811390 Accepted ntr:Mei2 nuclear dot 1811413 Accepted mRNA catabolic process, selective removal of meiosis speci 1811604 Fixed inc par: copper chaperone 1811650 Accepted extracellular space vs extracellular region 1812218 Accepted Integrin activation terms 1812241 Accepted ntr: regulation of NAD kinase activity 1813283 Accepted pericanalicular vesicle 1814623 Accepted New term: nucleotide-excision repair, DNA incision 1814952 Accepted double-stranded DNA-dependent ATPase activity 1814977 Accepted ATP-dependent 5'-3' DNA/RNA helicase activity 1815753 Accepted leukocyte/neuron adhesion 1819211 Accepted rg:regulation terms for LH secretion 1819216 Accepted rg: osteoblast proliferation and reg terms 1819850 Fixed basophil mediated immunity definition 1819979 Accepted sialic acid binding 1820682 Fixed Antero/retrograde axon cargo transport definition 1820705 Accepted rg: NTR: Neurofilament bundle assembly 1820791 Accepted ntr: queuine synthase 1822137 Fixed Ctf19p not Ctf1p 1823545 Works For Me rg: synonyms for GO:0008967 1823555 Fixed Error in term definition 899726 Accepted plant gametogenesis 2 966600 Out of Date monocot inflorescence development Statistics: