GO Monthly Release Notes for June 2005 ======================== Generated on Mon Aug 8 15:24:21 2005 Files used: gene_ontology.obo OLD: version 3.903, 27:05:2005 14:58 NEW: version 3.955, 30:06:2005 16:48 goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in biological_process ontology (139 new terms) GO:0001955 GO:0007275 MGI D 1035336 blood vessel maturation GO:0031437 GO:0006139 MAH D 1214245 regulation of mRNA cleavage GO:0031438 GO:0006139 MAH D 1214245 negative regulation of mRNA cleavage GO:0031439 GO:0006139 MAH D 1214245 positive regulation of mRNA cleavage GO:0031440 GO:0006139 MAH D 1214245 regulation of mRNA 3'-end processing GO:0031441 GO:0006139 MAH D 1214245 negative regulation of mRNA 3'-end processing GO:0031442 GO:0006139 MAH D 1214245 positive regulation of mRNA 3'-end processing GO:0031443 GO:0007582 MAH D 1216420 striated fast muscle contraction GO:0031444 GO:0007582 MAH D 1216420 striated slow muscle contraction GO:0031445 GO:0007582 MAH D 1216420 striated mixed muscle contraction GO:0031446 GO:0007582 MAH D 1216420 regulation of striated fast muscle contraction GO:0031447 GO:0007582 MAH D 1216420 negative regulation of striated fast muscle contraction GO:0031448 GO:0007582 MAH D 1216420 positive regulation of striated fast muscle contraction GO:0031449 GO:0007582 MAH D 1216420 regulation of striated slow muscle contraction GO:0031450 GO:0007582 MAH D 1216420 negative regulation of striated slow muscle contraction GO:0031451 GO:0007582 MAH D 1216420 positive regulation of striated slow muscle contraction GO:0031452 GO:0007582 MAH D 1216420 regulation of striated mixed muscle contraction GO:0031453 GO:0007582 MAH D 1216420 negative regulation of striated mixed muscle contraction GO:0031454 GO:0007582 MAH D 1216420 positive regulation of striated mixed muscle contraction GO:0031455 GO:0006519 MAH D 1195544 glycine betaine metabolism GO:0031456 GO:0006519 MAH D 1195544 glycine betaine biosynthesis GO:0009058 GO:0031457 GO:0006519 MAH D 1195544 glycine betaine catabolism GO:0009056 GO:0031460 GO:0006810 MAH D 1195544 glycine betaine transport GO:0031468 GO:0006996 MAH D 1218207 nuclear envelope reassembly GO:0031494 GO:0006259 MAH D 1035336 regulation of mating type switching GO:0007275 GO:0031495 GO:0006259 MAH D 1035336 negative regulation of mating type switching GO:0007275 GO:0031496 GO:0006259 MAH D 1035336 positive regulation of mating type switching GO:0007275 GO:0031497 GO:0006259 MAH D 1214394 chromatin assembly GO:0006996 GO:0031498 GO:0006259 MAH D 1214394 chromatin disassembly GO:0006996 GO:0031503 GO:0007582 MAH D 1220311 protein complex localization GO:0031504 GO:0016043 MAH D 1221175 cell wall organization and biogenesis (sensu Bacteria) GO:0031505 GO:0016043 MAH D 1221175 cell wall organization and biogenesis (sensu Fungi) GO:0031506 GO:0006412 MAH D 1221175 cell wall glycoprotein biosynthesis GO:0016043 GO:0031507 GO:0006259 MAH D 1220215 heterochromatin formation GO:0006996 GO:0031508 GO:0006259 MAH D 1220215 centric heterochromatin formation GO:0006996 GO:0031509 GO:0006259 MAH D 1220215 telomeric heterochromatin formation GO:0006996 GO:0043396 GO:0007267 JL D 1229000 corticotropin-releasing hormone secretion GO:0007582 GO:0043397 GO:0007267 JL D 1229000 regulation of corticotropin-releasing hormone secretion GO:0007582 GO:0043400 GO:0007267 JL D 1229092 cortisol secretion GO:0007582 GO:0043401 GO:0007165 JL D 1229681 steroid hormone mediated signaling GO:0009719 GO:0043402 GO:0007165 JL D 1229681 glucocorticoid mediated signaling GO:0009719 GO:0043403 GO:0006950 JL D 1229740 skeletal muscle regeneration GO:0009605 GO:0009653 GO:0040007 GO:0043405 GO:0008150 JL D 1229778 regulation of MAPK activity GO:0043406 GO:0008150 JL D 1229778 positive regulation of MAPK activity GO:0043407 GO:0008150 JL D 1229778 negative regulation of MAPK activity GO:0043408 GO:0007165 JL D 1229778 regulation of MAPKKK cascade GO:0043409 GO:0007165 JL D 1229778 negative regulation of MAPKKK cascade GO:0043410 GO:0007165 JL D 1229778 positive regulation of MAPKKK cascade GO:0048557 GO:0009653 JIC D 1209389 embryonic digestive tract morphogenesis GO:0009790 GO:0048558 GO:0009653 JIC D 1209389 embryonic gut morphogenesis GO:0009790 GO:0048559 GO:0009653 JIC D 1205241 establishment of floral organ orientation GO:0048560 GO:0009653 JIC D 1205241 establishment of anatomical structure orientation GO:0048561 GO:0009653 JIC D 1035336 establishment of organ orientation GO:0048562 GO:0009653 JIC D 1209811 embryonic organogenesis GO:0009790 GO:0048563 GO:0009653 JIC D 1209811 post-embryonic organogenesis GO:0048564 GO:0006091 JIC D 1219746 photosystem I assembly GO:0048565 GO:0007275 JIC D 1185976 gut development GO:0048566 GO:0009790 JIC D 1185976 embryonic gut development GO:0048567 GO:0009653 JIC D 1185976 ectodermal gut morphogenesis GO:0009790 GO:0048568 GO:0009790 JIC D 1185976 embryonic organ development GO:0048569 GO:0007275 JIC D 1185976 post-embryonic organ development GO:0048570 GO:0009653 JIC D 1185976 notochord morphogenesis GO:0009790 GO:0048571 GO:0009628 JIC D 1210089 long-day photoperiodism GO:0048572 GO:0009628 JIC D 1210089 short-day photoperiodism GO:0048573 GO:0007275 JIC D 1210089 photoperiodism, flowering GO:0009628 GO:0048574 GO:0007275 JIC D 1210089 long-day photoperiodism, flowering GO:0009628 GO:0048575 GO:0007275 JIC D 1210089 short-day photoperiodism, flowering GO:0009628 GO:0048576 GO:0007275 JIC D 1210089 positive regulation of short-day photoperiodism, flowering GO:0009628 GO:0048577 GO:0007275 JIC D 1210089 negative regulation of short-day photoperiodism, flowering GO:0009628 GO:0048578 GO:0007275 JIC D 1210089 positive regulation of long-day photoperiodism, flowering GO:0009628 GO:0048579 GO:0007275 JIC D 1210089 negative regulation of long-day photoperiodism, flowering GO:0009628 GO:0048580 GO:0007275 JIC D 1210089 regulation of post-embryonic development GO:0048581 GO:0007275 JIC D 1210089 negative regulation of post-embryonic development GO:0048582 GO:0007275 JIC D 1210089 positive regulation of post-embryonic development GO:0048583 GO:0007582 JIC D 1210089 regulation of response to stimulus GO:0048584 GO:0007582 JIC D 1210089 positive regulation of response to stimulus GO:0048585 GO:0007582 JIC D 1210089 negative regulation of response to stimulus GO:0048586 GO:0007275 JIC D 1210089 regulation of long-day photoperiodism, flowering GO:0009628 GO:0048587 GO:0007275 JIC D 1210089 regulation of short-day photoperiodism, flowering GO:0009628 GO:0048588 GO:0008283 JIC D 1035336 developmental growth of a unicellular organism GO:0016049 GO:0030154 GO:0048589 GO:0007275 JIC D 1035336 developmental growth GO:0040007 GO:0048590 GO:0040007 JIC D 1035336 non-developmental growth GO:0048591 GO:0008283 JIC D 1035336 non-developmental growth of a unicellular organism GO:0016049 GO:0048592 GO:0009653 JIC D 1035336 eye morphogenesis GO:0048593 GO:0009653 JIC D 1035336 eye morphogenesis (sensu Vertebrata) GO:0048594 GO:0009653 JIC D 1035336 eye morphogenesis (sensu Actinopterygii) GO:0048595 GO:0009653 JIC D 1035336 eye morphogenesis (sensu Mammalia) GO:0009790 GO:0048596 GO:0009653 JIC D 1035336 embryonic eye morphogenesis (sensu Actinopterygii) GO:0009790 GO:0048597 GO:0009653 JIC D 1035336 post-embryonic eye morphogenesis (sensu Actinopterygii) GO:0048598 GO:0009653 JIC D 1185976 embryonic morphogenesis GO:0009790 GO:0048599 GO:0000003 JIC D 1169985 oocyte development GO:0030154 GO:0048600 GO:0000003 JIC D 1169985 oocyte fate commitment GO:0030154 GO:0048601 GO:0000003 JIC D 1169985 oocyte morphogenesis GO:0030154 GO:0051382 GO:0006996 AI D 1220274 kinetochore assembly GO:0051383 GO:0006996 AI D 1220274 kinetochore organization and biogenesis GO:0051384 GO:0009719 AI D 1225396 response to glucocorticoid stimulus GO:0051385 GO:0009719 AI D 1225396 response to mineralocorticoid stimulus GO:0051386 GO:0007165 AI D 1225538 regulation of nerve growth factor receptor signaling pathway GO:0051387 GO:0007165 AI D 1225538 negative regulation of nerve growth factor receptor signaling pathway GO:0051388 GO:0007165 AI D 1225538 positive regulation of nerve growth factor receptor signaling pathway GO:0051389 GO:0007165 AI D 1225172 inactivation of MAPKK activity GO:0051390 GO:0007165 AI D 1225172 inactivation of MAPKKK activity GO:0051391 GO:0006139 AI D 1221410 tRNA acetylation GO:0051394 GO:0007165 AI D 1226153 regulation of nerve growth factor receptor activity GO:0051395 GO:0007165 AI D 1226153 negative regulation of nerve growth factor receptor activity GO:0051396 GO:0007165 AI D 1226153 positive regulation of nerve growth factor receptor activity GO:0051402 GO:0008219 AI D 1225536 programmed cell death, neurons GO:0051403 GO:0007165 AI D 1218067 stress-activated MAPK cascade GO:0051409 GO:0006950 AI D 1191527 response to nitrosative stress GO:0051410 GO:0006950 AI D 1191527 detoxification of nitrogen compound GO:0008152 GO:0009628 GO:0051412 GO:0009719 AI D 1227015 response to corticosterone stimulus GO:0051413 GO:0009719 AI D 1227015 response to cortisone stimulus GO:0051414 GO:0009719 AI D 1227015 response to cortisol stimulus GO:0051415 GO:0007010 AI D 1227085 interphase microtubule nucleation by interphase microtubule organizing center GO:0007049 GO:0051417 GO:0007010 AI D 1227085 microtubule nucleation by spindle pole body GO:0051418 GO:0007010 AI D 1227085 microtubule nucleation by microtubule organizing center GO:0051421 GO:0008150 AI D 1217053 regulation of endo-1,4-beta-xylanase activity GO:0051422 GO:0008150 AI D 1217053 negative regulation of endo-1,4-beta-xylanase activity GO:0051423 GO:0008150 AI D 1217053 positive regulation of endo-1,4-beta-xylanase activity GO:0051426 GO:0006996 AI D 1202753 spindle pole body maturation GO:0051436 GO:0007049 AI D 1187523 negative regulation of ubiquitin ligase activity during mitotic cell cycle GO:0051437 GO:0007049 AI D 1187523 positive regulation of ubiquitin ligase activity during mitotic cell cycle GO:0051438 GO:0008150 AI D 1187523 regulation of ubiquitin ligase activity GO:0051439 GO:0007049 AI D 1187523 regulation of ubiquitin ligase activity during mitotic cell cycle GO:0051440 GO:0007049 AI D 1187523 regulation of ubiquitin ligase activity during meiotic cell cycle GO:0051441 GO:0007049 AI D 1187523 positive regulation of ubiquitin ligase activity during meiotic cell cycle GO:0051442 GO:0007049 AI D 1187523 negative regulation of ubiquitin ligase activity during meiotic cell cycle GO:0051443 GO:0008150 AI D 1187523 positive regulation of ubiquitin ligase activity GO:0051444 GO:0008150 AI D 1187523 negative regulation of ubiquitin ligase activity GO:0051445 GO:0007049 AI D 1187523 regulation of meiotic cell cycle GO:0051446 GO:0007049 AI D 1187523 positive regulation of meiotic cell cycle GO:0051447 GO:0007049 AI D 1187523 negative regulation of meiotic cell cycle GO:0051450 GO:0008283 AI D 1229634 myoblast proliferation GO:0051451 GO:0007582 AI D 1229599 myoblast migration GO:0007610 GO:0009653 GO:0051452 GO:0019725 AI D 1183161 cellular pH reduction GO:0051453 GO:0019725 AI D 1183161 regulation of cellular pH GO:0051454 GO:0019725 AI D 1183161 cellular pH elevation GO:0051455 GO:0007049 AI D 1154416 attachment of spindle microtubules to kinetochore during meiosis I GO:0051456 GO:0007049 AI D 1154416 attachment of spindle microtubules to kinetochore during meiosis II New obsoletions in biological_process ontology GO:0007515, lymph gland development: was wrongly defined. GO:0019942, NEDD8 class-dependent protein catabolism: NEDD8-class tags do not target proteins for proteolytic destruction. GO:0030939, response to long-day photoperiod: was wrongly defined. GO:0030940, response to short-day photoperiod: was wrongly defined. GO:0042798, protein neddylation during NEDD8 class-dependent protein catabolism: NEDD8-class tags do not target proteins for proteolytic destruction. Term name changes in biological_process ontology GO:0000167: activation of MAPKKK during osmolarity sensing --> activation of MAPKKK activity during osmolarity sensing GO:0000168: activation of MAPKK during osmolarity sensing --> activation of MAPKK activity during osmolarity sensing GO:0000169: activation of MAPK during osmolarity sensing --> activation of MAPK activity during osmolarity sensing GO:0000173: inactivation of MAPK during osmolarity sensing --> inactivation of MAPK activity during osmolarity sensing GO:0000185: activation of MAPKKK --> activation of MAPKKK activity GO:0000186: activation of MAPKK --> activation of MAPKK activity GO:0000187: activation of MAPK --> activation of MAPK activity GO:0000188: inactivation of MAPK --> inactivation of MAPK activity GO:0000197: activation of MAPKKK during cell wall biogenesis --> activation of MAPKKK activity during cell wall biogenesis GO:0000198: activation of MAPKK during cell wall biogenesis --> activation of MAPKK activity during cell wall biogenesis GO:0000199: activation of MAPK during cell wall biogenesis --> activation of MAPK activity during cell wall biogenesis GO:0000200: inactivation of MAPK during cell wall biogenesis --> inactivation of MAPK activity during cell wall biogenesis GO:0001654: eye morphogenesis --> eye development GO:0001747: eye morphogenesis (sensu Mammalia) --> eye development (sensu Mammalia) GO:0007092: anaphase-promoting complex activation --> anaphase-promoting complex activation during mitotic cell cycle GO:0007256: activation of JNKK --> activation of JNKK activity GO:0007257: activation of JNK --> activation of JNK activity GO:0007439: ectodermal gut morphogenesis --> ectodermal gut development GO:0007533: mating type switching and recombination --> mating type switching GO:0007535: donor preference --> donor selection GO:0009648: response to photoperiod --> photoperiodism GO:0019285: betaine biosynthesis from choline --> glycine betaine biosynthesis from choline GO:0019286: betaine biosynthesis from glycine --> glycine betaine biosynthesis from glycine GO:0031075: eye morphogenesis (sensu Actinopterygii) --> eye development (sensu Actinopterygii) GO:0031076: embryonic eye morphogenesis (sensu Actinopterygii) --> embryonic eye development (sensu Actinopterygii) GO:0031077: post-embryonic eye morphogenesis (sensu Actinopterygii) --> post-embryonic eye development (sensu Actinopterygii) GO:0031322: forespore specific spindle pole body modification --> forespore-specific spindle pole body modification GO:0042655: activation of JNKKK --> activation of JNKKK activity GO:0043010: eye morphogenesis (sensu Vertebrata) --> eye development (sensu Vertebrata) GO:0046666: retinal programmed cell death --> retinal cell programmed cell death GO:0051316: attachment of spindle microtubules to kinetochore during meiosis --> attachment of spindle microtubules to kinetochore during meiotic chromosome segregation New definitions for biological_process ontology terms (7 new definitions) GO:0007164, establishment of tissue polarity GO:0007233, activation of Pbs2 kinase GO:0007533, mating type switching GO:0007535, donor selection GO:0007536, activation of recombination (HML) GO:0007537, inactivation of recombination (HML) GO:0043298, symbiotic interaction with other, non-host organism New term merges in biological_process ontology GO:0009795 has been merged into GO:0009790, embryonic development GO:0009857 has been merged into GO:0048544, recognition or rejection of self pollen Term movements in biological_process ontology: Terms movements under GO Slim term 'electron transport ; GO:0006118' - GO:0006124, ferredoxin metabolism - GO:0043172, ferredoxin biosynthesis Terms movements under GO Slim term 'DNA metabolism ; GO:0006259' + GO:0007536, activation of recombination (HML) + GO:0007537, inactivation of recombination (HML) Terms movements under GO Slim term 'protein biosynthesis ; GO:0006412' + GO:0042125, protein amino acid galactosylation Terms movements under GO Slim term 'organelle organization and biogenesis ; GO:0006996' + GO:0006997, nuclear organization and biogenesis + GO:0006998, nuclear membrane organization and biogenesis + GO:0006999, nuclear pore organization and biogenesis + GO:0007077, mitotic nuclear envelope disassembly + GO:0007078, lamin depolymerization + GO:0007084, mitotic nuclear envelope reassembly + GO:0007086, vesicle fusion with nuclear membrane + GO:0007087, mitotic nuclear pore complex reassembly + GO:0007097, nuclear migration + GO:0007312, oocyte nucleus migration + GO:0009562, megagametophyte nuclear migration + GO:0018985, pronuclear envelope synthesis + GO:0030575, nuclear body organization and biogenesis + GO:0030576, Cajal body organization and biogenesis + GO:0030577, Lands organization and biogenesis + GO:0030578, PML body organization and biogenesis + GO:0030722, oocyte nucleus positioning + GO:0031081, nuclear pore distribution + GO:0035038, female pronucleus formation + GO:0035043, male pronuclear envelope synthesis + GO:0035046, pronuclear migration + GO:0035063, nuclear speck organization and biogenesis + GO:0035190, syncytial nuclear migration + GO:0035191, nuclear axial expansion + GO:0035192, nuclear cortical migration + GO:0040023, nuclear positioning + GO:0042070, oocyte nucleus anchoring + GO:0048126, oocyte nucleus positioning (sensu Insecta) + GO:0048127, oocyte nucleus anchoring (sensu Insecta) + GO:0048128, oocyte nucleus migration (sensu Insecta) + GO:0051078, meiotic nuclear envelope disassembly + GO:0051079, meiosis I nuclear envelope disassembly + GO:0051080, meiosis II nuclear envelope disassembly + GO:0051081, nuclear envelope disassembly + GO:0051292, nuclear pore complex assembly + GO:0051333, meiotic nuclear envelope reassembly + GO:0051334, meiosis I nuclear envelope reassembly + GO:0051335, meiosis II nuclear envelope reassembly Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010' - GO:0001736, establishment of planar polarity - GO:0001737, establishment of wing hair orientation - GO:0007164, establishment of tissue polarity - GO:0035320, wing hair site selection - GO:0042247, establishment of polarity of follicular epithelium - GO:0042249, establishment of polarity of embryonic epithelium - GO:0042252, establishment of polarity of larval imaginal disc epithelium - GO:0048104, establishment of body hair or bristle orientation - GO:0048105, establishment of body hair orientation - GO:0048106, establishment of body bristle orientation Terms movements under GO Slim term 'cell cycle ; GO:0007049' - GO:0000073, spindle pole body separation - GO:0007103, spindle pole body duplication in nuclear envelope - GO:0030471, spindle pole body and microtubule cycle (sensu Fungi) - GO:0030474, spindle pole body duplication - GO:0031046, spindle pole body duplication in cytoplasm Terms movements under GO Slim term 'development ; GO:0007275' + GO:0001654, eye development + GO:0007494, midgut development + GO:0007495, visceral mesoderm-endoderm interaction + GO:0007496, anterior midgut development + GO:0007497, posterior midgut development + GO:0009860, pollen tube growth + GO:0010075, regulation of meristem size + GO:0010080, regulation of floral meristem size + GO:0010081, regulation of inflorescence meristem size + GO:0010083, regulation of vegetative meristem size + GO:0031075, eye development (sensu Actinopterygii) + GO:0031076, embryonic eye development (sensu Actinopterygii) + GO:0031077, post-embryonic eye development (sensu Actinopterygii) + GO:0035167, lymph gland hemopoiesis (sensu Arthropoda) + GO:0035212, cell competition (sensu Metazoa) + GO:0035266, meristem growth - GO:0040007, growth + GO:0040008, regulation of growth + GO:0040009, regulation of growth rate + GO:0040010, positive regulation of growth rate + GO:0040014, regulation of body size + GO:0040015, negative regulation of body size + GO:0040018, positive regulation of body size + GO:0043010, eye development (sensu Vertebrata) + GO:0045926, negative regulation of growth + GO:0045927, positive regulation of growth + GO:0045961, negative regulation of development, heterochronic + GO:0045962, positive regulation of development, heterochronic + GO:0045967, negative regulation of growth rate + GO:0046620, regulation of organ size + GO:0046621, negative regulation of organ size + GO:0046622, positive regulation of organ size - GO:0048498, establishment of petal orientation Terms movements under GO Slim term 'physiological process ; GO:0007582' + GO:0000073, spindle pole body separation + GO:0006885, regulation of pH + GO:0030471, spindle pole body and microtubule cycle (sensu Fungi) + GO:0045851, pH reduction + GO:0045852, pH elevation Terms movements under GO Slim term 'biological_process ; GO:0008150' + GO:0040007, growth Terms movements under GO Slim term 'morphogenesis ; GO:0009653' - GO:0001654, eye development - GO:0001747, eye development (sensu Mammalia) + GO:0007164, establishment of tissue polarity - GO:0007439, ectodermal gut development - GO:0007494, midgut development - GO:0007495, visceral mesoderm-endoderm interaction - GO:0007496, anterior midgut development - GO:0007497, posterior midgut development - GO:0030903, notochord development - GO:0031075, eye development (sensu Actinopterygii) - GO:0031076, embryonic eye development (sensu Actinopterygii) - GO:0031077, post-embryonic eye development (sensu Actinopterygii) - GO:0035167, lymph gland hemopoiesis (sensu Arthropoda) - GO:0035168, lymph gland hemocyte differentiation (sensu Arthropoda) - GO:0035169, lymph gland plasmatocyte differentiation - GO:0035170, lymph gland crystal cell differentiation - GO:0035171, lamellocyte differentiation - GO:0035203, regulation of lamellocyte differentiation - GO:0035204, negative regulation of lamellocyte differentiation - GO:0035205, positive regulation of lamellocyte differentiation - GO:0043010, eye development (sensu Vertebrata) + GO:0048498, establishment of petal orientation Terms movements under GO Slim term 'embryonic development ; GO:0009790' - GO:0031076, embryonic eye development (sensu Actinopterygii) Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043' + GO:0001737, establishment of wing hair orientation - GO:0006997, nuclear organization and biogenesis - GO:0006998, nuclear membrane organization and biogenesis - GO:0006999, nuclear pore organization and biogenesis - GO:0007077, mitotic nuclear envelope disassembly - GO:0007078, lamin depolymerization - GO:0007084, mitotic nuclear envelope reassembly - GO:0007086, vesicle fusion with nuclear membrane - GO:0007087, mitotic nuclear pore complex reassembly - GO:0007097, nuclear migration - GO:0007312, oocyte nucleus migration - GO:0009562, megagametophyte nuclear migration - GO:0018985, pronuclear envelope synthesis - GO:0030575, nuclear body organization and biogenesis - GO:0030576, Cajal body organization and biogenesis - GO:0030577, Lands organization and biogenesis - GO:0030578, PML body organization and biogenesis - GO:0030722, oocyte nucleus positioning - GO:0031081, nuclear pore distribution - GO:0035038, female pronucleus formation - GO:0035043, male pronuclear envelope synthesis - GO:0035046, pronuclear migration - GO:0035063, nuclear speck organization and biogenesis - GO:0035190, syncytial nuclear migration - GO:0035191, nuclear axial expansion - GO:0035192, nuclear cortical migration + GO:0035320, wing hair site selection - GO:0040023, nuclear positioning - GO:0042070, oocyte nucleus anchoring - GO:0048126, oocyte nucleus positioning (sensu Insecta) - GO:0048127, oocyte nucleus anchoring (sensu Insecta) - GO:0048128, oocyte nucleus migration (sensu Insecta) - GO:0051078, meiotic nuclear envelope disassembly - GO:0051079, meiosis I nuclear envelope disassembly - GO:0051080, meiosis II nuclear envelope disassembly - GO:0051081, nuclear envelope disassembly - GO:0051292, nuclear pore complex assembly - GO:0051333, meiotic nuclear envelope reassembly - GO:0051334, meiosis I nuclear envelope reassembly - GO:0051335, meiosis II nuclear envelope reassembly Terms movements under GO Slim term 'protein metabolism ; GO:0019538' - GO:0016584, nucleosome spacing Terms movements under GO Slim term 'cell homeostasis ; GO:0019725' - GO:0006885, regulation of pH - GO:0045851, pH reduction - GO:0045852, pH elevation Terms movements under GO Slim term 'cell differentiation ; GO:0030154' + GO:0001555, oocyte growth + GO:0007281, germ cell development + GO:0007282, cystoblast division + GO:0007284, spermatogonial cell division + GO:0007308, oocyte construction + GO:0007309, oocyte axis determination + GO:0007310, oocyte dorsal/ventral axis determination + GO:0007311, maternal determination of dorsal/ventral axis, oocyte, germ-line encoded + GO:0007312, oocyte nucleus migration + GO:0007313, maternal determination of dorsal/ventral axis, oocyte, soma encoded + GO:0007314, oocyte anterior/posterior axis determination + GO:0007315, pole plasm assembly + GO:0007316, pole plasm RNA localization + GO:0007317, regulation of pole plasm oskar mRNA localization + GO:0007318, pole plasm protein localization + GO:0007319, negative regulation of oskar mRNA translation + GO:0008103, oocyte microtubule cytoskeleton polarization + GO:0008359, regulation of bicoid mRNA localization + GO:0016325, oocyte microtubule cytoskeleton organization + GO:0019094, pole plasm mRNA localization + GO:0019095, pole plasm mitochondrial rRNA localization + GO:0019096, pole plasm mitochondrial lrRNA localization + GO:0019097, pole plasm mitochondrial srRNA localization + GO:0030715, oocyte growth (sensu Insecta) + GO:0030719, polar granule organization and biogenesis + GO:0030722, oocyte nucleus positioning + GO:0030727, female germ-line cyst formation (sensu Insecta) + GO:0042070, oocyte nucleus anchoring + GO:0042078, germ-line stem cell division + GO:0045450, bicoid mRNA localization + GO:0045451, pole plasm oskar mRNA localization + GO:0045853, negative regulation of bicoid mRNA localization + GO:0045854, positive regulation of bicoid mRNA localization + GO:0045855, negative regulation of pole plasm oskar mRNA localization + GO:0045856, positive regulation of pole plasm oskar mRNA localization + GO:0046011, regulation of oskar mRNA translation + GO:0046012, positive regulation of oskar mRNA translation + GO:0046594, maintenance of pole plasm mRNA localization + GO:0046595, establishment of pole plasm mRNA localization + GO:0048110, oocyte construction (sensu Insecta) + GO:0048111, oocyte axis determination (sensu Insecta) + GO:0048112, oocyte anterior/posterior axis determination (sensu Insecta) + GO:0048113, pole plasm assembly (sensu Insecta) + GO:0048123, oocyte dorsal/ventral axis determination (sensu Insecta) + GO:0048124, maternal determination of dorsal/ventral axis, oocyte, germ-line encoded (sensu Insecta) + GO:0048125, maternal determination of dorsal/ventral axis, oocyte, soma encoded (sensu Insecta) + GO:0048126, oocyte nucleus positioning (sensu Insecta) + GO:0048127, oocyte nucleus anchoring (sensu Insecta) + GO:0048128, oocyte nucleus migration (sensu Insecta) + GO:0048129, oocyte microtubule cytoskeleton polarization (sensu Insecta) + GO:0048130, oocyte microtubule cytoskeleton organization (sensu Insecta) + GO:0048132, female germ-line stem cell division + GO:0048133, male germ-line stem cell division + GO:0048134, germ-line cyst formation + GO:0048135, female germ-line cyst formation + GO:0048136, male germ-line cyst formation + GO:0048137, spermatocyte division + GO:0048141, female germ-line stem cell division (sensu Insecta) + GO:0048142, cystoblast division (sensu Insecta) New terms in cellular_component ontology (36 new terms) GO:0031430 GO:0005737 MAH D 1214073 M line GO:0031431 GO:0005575 MAH D 1214290 Dbf4-dependent protein kinase complex GO:0031436 GO:0005634 MAH D 1214235 BRCA1-BARD1 complex GO:0031461 GO:0005622 MAH D 1205167 cullin-RING ubiquitin ligase complex GO:0031462 GO:0005622 MAH D 1205167 Cul2-RING ubiquitin ligase complex GO:0031463 GO:0005622 MAH D 1205167 Cul3-RING ubiquitin ligase complex GO:0031464 GO:0005622 MAH D 1205167 Cul4A-RING ubiquitin ligase complex GO:0031465 GO:0005622 MAH D 1205167 Cul4B-RING ubiquitin ligase complex GO:0031466 GO:0005622 MAH D 1205167 Cul5-RING ubiquitin ligase complex GO:0031467 GO:0005622 MAH D 1205167 Cul7-RING ubiquitin ligase complex GO:0031469 GO:0005622 MAH D 1217195 polyhedral organelle GO:0031470 GO:0005622 MAH D 1217195 carboxysome GO:0031471 GO:0005622 MAH D 1217195 ethanolamine degradation polyhedral organelle GO:0031472 GO:0005622 MAH D 1217195 propanediol degradation polyhedral organelle GO:0031474 GO:0005856 MAH D 1217467 myosin IV GO:0031475 GO:0005856 MAH D 1217467 myosin V GO:0031476 GO:0005856 MAH D 1217467 myosin VI GO:0031477 GO:0005856 MAH D 1217467 myosin VII GO:0031478 GO:0005856 MAH D 1217467 myosin VIII GO:0031479 GO:0005856 MAH D 1217467 myosin IX GO:0031480 GO:0005856 MAH D 1217467 myosin X GO:0031481 GO:0005856 MAH D 1217467 myosin XI GO:0031482 GO:0005856 MAH D 1217467 myosin XII GO:0031483 GO:0005856 MAH D 1217467 myosin XIII GO:0031484 GO:0005856 MAH D 1217467 myosin XIV GO:0031485 GO:0005856 MAH D 1217467 myosin XV GO:0031486 GO:0005856 MAH D 1217467 myosin XVI GO:0031487 GO:0005856 MAH D 1217467 myosin XVII GO:0031488 GO:0005856 MAH D 1217467 myosin XVIII GO:0031499 GO:0005634 MAH D 1220653 TRAMP complex GO:0031500 GO:0005622 MAH D 1218098 Tea1 cell-end complex GO:0031501 GO:0005575 MAH D 1221157 mannosyltransferase complex GO:0031502 GO:0005783 MAH D 1221157 dolichyl-phosphate-mannose-protein mannosyltransferase complex GO:0031510 GO:0005575 MAH D 1224247 SUMO activating enzyme complex GO:0048555 GO:0005634 JIC D 1205241 generative cell nucleus GO:0048556 GO:0005634 JIC D 1205241 microsporocyte nucleus New obsoletions in cellular_component ontology GO:0043074, microsporocyte nucleus: was wrongly defined. GO:0043075, sperm cell nucleus (sensu Magnoliophyta): the definition was incorrect. Term name changes in cellular_component ontology GO:0000136: mannosyltransferase complex --> alpha-1,6-mannosyltransferase complex GO:0017177: alpha-glucosidase complex --> alpha-glucosidase II complex New definitions for cellular_component ontology terms (1 new definitions) GO:0017177, alpha-glucosidase II complex New term merges in cellular_component ontology GO:0005860 has been merged into GO:0016461, unconventional myosin Term movements in cellular_component ontology: Terms movements under GO Slim term 'intracellular ; GO:0005622' + GO:0009355, DNA polymerase V complex + GO:0009360, DNA polymerase III complex + GO:0042575, DNA polymerase complex Terms movements under GO Slim term 'cytoplasm ; GO:0005737' - GO:0005659, delta DNA polymerase complex - GO:0005660, delta-DNA polymerase cofactor complex - GO:0008622, epsilon DNA polymerase complex - GO:0009355, DNA polymerase V complex - GO:0009360, DNA polymerase III complex - GO:0016035, zeta DNA polymerase complex - GO:0042575, DNA polymerase complex Terms movements under GO Slim term 'endoplasmic reticulum ; GO:0005783' + GO:0017177, alpha-glucosidase II complex Terms movements under GO Slim term 'unlocalized protein complex ; GO:0005941' - GO:0017177, alpha-glucosidase II complex New terms in molecular_function ontology (57 new terms) GO:0031432 GO:0008092 MAH D 1215598 titin binding GO:0031433 GO:0008092 MAH D 1215577 telethonin binding GO:0031434 GO:0005515 MAH D 1216316 mitogen-activated protein kinase kinase binding GO:0031435 GO:0005515 MAH D 1216316 mitogen-activated protein kinase kinase kinase binding GO:0031458 GO:0005215 MAH D 1195544 betaine-transporting ATPase activity GO:0016787 GO:0031459 GO:0005215 MAH D 1195544 glycine betaine-transporting ATPase activity GO:0016787 GO:0031473 GO:0008092 MAH D 1217455 myosin III binding GO:0031489 GO:0008092 MAH D 1217467 myosin V binding GO:0031490 GO:0003677 MAH D 1218297 chromatin DNA binding GO:0003682 GO:0031491 GO:0003682 MAH D 1218297 nucleosome binding GO:0031492 GO:0003677 MAH D 1218297 nucleosomal DNA binding GO:0003682 GO:0031493 GO:0003682 MAH D 1218297 nucleosomal histone binding GO:0005515 GO:0043398 GO:0005515 JL D 1229029 HLH domain binding GO:0043399 GO:0016740 JL D 1228330 tRNA A64-2'-O-ribosylphosphate transferase activity GO:0043404 GO:0004872 JL D 1228901 corticotropin-releasing hormone receptor activity GO:0005515 GO:0043411 GO:0008092 JL D 1228190 myopalladin binding GO:0051370 GO:0008092 AI D 1224905 ZASP binding GO:0051371 GO:0008092 AI D 1224175 muscle alpha-actinin binding GO:0051372 GO:0008092 AI D 1224175 nonmuscle alpha-actinin binding GO:0051373 GO:0008092 AI D 1221754 FATZ binding GO:0051374 GO:0008092 AI D 1221754 FATZ 1 binding GO:0051375 GO:0008092 AI D 1221754 FATZ 2 binding GO:0051376 GO:0008092 AI D 1221754 FATZ 3 binding GO:0051377 GO:0016740 AI D 1203876 mannose-ethanolamine phosphotransferase activity GO:0051378 GO:0005488 AI D 1225374 serotonin binding GO:0051379 GO:0005488 AI D 1225374 epinephrine binding GO:0051380 GO:0005488 AI D 1225374 norepinephrine binding GO:0051381 GO:0005488 AI D 1225374 histamine binding GO:0051392 GO:0016740 AI D 1221410 tRNA N-acetyltransferase activity GO:0051393 GO:0008092 AI D 1226134 alpha-actinin binding GO:0051397 GO:0008233 AI D 1220222 N-terminal basic amino acid aminopeptidase activity GO:0051398 GO:0008233 AI D 1220222 N-terminal lysine aminopeptidase activity GO:0051399 GO:0008233 AI D 1220222 N-terminal arginine aminopeptidase activity GO:0051400 GO:0005515 AI D 1228865 BH domain binding GO:0051401 GO:0005515 AI D 1226287 CH domain binding GO:0051404 GO:0008233 AI D 1215973 clostripain activity GO:0051405 GO:0008233 AI D 1215965 microbial collagenase activity GO:0051406 GO:0008092 AI D 1226856 beta-actinin binding GO:0051407 GO:0005215 AI D 1168785 glycerone phosphate:inorganic phosphate antiporter activity GO:0051408 GO:0005215 AI D 1168782 glyceraldehyde 3-phosphate:inorganic phosphate antiporter activity GO:0051411 GO:0008092 AI D 1226960 ALP binding GO:0051416 GO:0008092 AI D 1228076 myotilin binding GO:0051419 GO:0008092 AI D 1228089 nebulin binding GO:0051420 GO:0008092 AI D 1228089 nebulette binding GO:0051424 GO:0005515 AI D 1228887 corticotropin-releasing hormone binding GO:0051425 GO:0005515 AI D 1228471 PTB domain binding GO:0051427 GO:0005102 AI D 1228973 hormone receptor binding GO:0051428 GO:0005102 AI D 1228973 polypeptide hormone receptor binding GO:0051429 GO:0005102 AI D 1228973 corticotropin-releasing hormone receptor binding GO:0051430 GO:0005102 AI D 1228973 corticotropin-releasing hormone receptor 1 binding GO:0051431 GO:0005102 AI D 1228973 corticotropin-releasing hormone receptor 2 binding GO:0051432 GO:0005515 AI D 1228865 BH1 domain binding GO:0051433 GO:0005515 AI D 1228865 BH2 domain binding GO:0051434 GO:0005515 AI D 1228865 BH3 domain binding GO:0051435 GO:0005515 AI D 1228865 BH4 domain binding GO:0051448 GO:0005515 AI D 1229607 gonadotropin-releasing hormone binding GO:0051449 GO:0005515 AI D 1229607 thyrotropin-releasing hormone binding Term name changes in molecular_function ontology GO:0015346: ferric triacetylfusarinine C:hydrogen symporter activity --> ferric triacetylfusarinine [TC:hydrogen symporter activity GO:0019783: ubiquitin-like-specific protease activity --> ubiquitin-like-protein-specific protease activity GO:0051267: mannose-ethanolamine phosphotransferase activity --> CP2 mannose-ethanolamine phosphotransferase activity New definitions for molecular_function ontology terms (14 new definitions) GO:0004888, transmembrane receptor activity GO:0005519, cytoskeletal regulatory protein binding GO:0008484, sulfuric ester hydrolase activity GO:0008642, ubiquitin-like activating enzyme activity GO:0016289, CoA hydrolase activity GO:0016790, thiolester hydrolase activity GO:0016793, triphosphoric monoester hydrolase activity GO:0016794, diphosphoric monoester hydrolase activity GO:0019778, APG12 activating enzyme activity GO:0019779, APG8 activating enzyme activity GO:0019780, FAT10 activating enzyme activity GO:0019782, ISG15 activating enzyme activity GO:0042292, URM1 activating enzyme activity GO:0042293, Hub1 activating enzyme activity Term movements in molecular_function ontology: Terms movements under GO Slim term 'DNA binding ; GO:0003677' - GO:0003682, chromatin binding + GO:0043035, chromatin insulator sequence binding Terms movements under GO Slim term 'binding ; GO:0005488' + GO:0003682, chromatin binding SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1002567 Fixed orientation GO:0048559-48561 1012936 Fixed parent: mating-type switching and recombination GO:0031494-31496 1122271 Works For Me tpv? lipoprotein biosynthesis [none] 1154416 Accepted query-attachment of spindle microtubules GO:0051455 GO:0051456 1167664 Fixed query: NEDD8 class-dependent protein catabolism [none] 1168393 Rejected query diff/ubiqutin-specific protease/ub thiol.. [none] 1168782 Accepted glyceraldehyde 3-phosphate:inorganic phosphate activity GO:0051408 1168785 Accepted dihydroxyacetone-phosphate:inorganic phosphate activity GO:0051407 1169985 Accepted oocyte development GO:0048599 GO:0048600 GO:0048601 1183161 Accepted query regulation of pH GO:0051452 GO:0051453 GO:0051454 1185172 Accepted lymph gland development (sensu Insecta) GO:0048542 GO:0048534-48541 1187523 Accepted ntr: anaphase-promoting complex inhibtion GO:0051436-51447 GO:0051487-51488 1190318 Duplicate query secretory pathway parentage [none] 1191527 Works For Me ntr?:process for 1.14.12.17 GO:0051409 GO:0051410 1193688 Duplicate S.pombe mes1p [none] 1195544 Accepted betaine-transporting ATPase activity GO:0031455-31460 1196016 Accepted self-incompatibility GO:0048544 1198276 Rejected Germination [none] 1202753 Accepted ntr: spindle pole body maturation GO:0051426 1202942 Accepted processes by which... [none] 1203125 Accepted gluconeogenesis [none] 1203876 Fixed GO:0051267 mannose-ethanolamine phosphotransferase activity GO:0051377 1205167 Accepted ubiquitin ligase complexes GO:0031461-31467 1205627 Rejected heparan sulfate biosynthesis ; GO: NEW [none] 1209302 Accepted Modify alpha glucosidase complex [none] 1209389 Accepted digestive tract and gut terms GO:0048546-48547 GO:0048557-48558 1209811 Accepted embryonic organogenesis GO:0048562-48563 1210089 Accepted photoperiodic control of flowering GO:0048571-48587 1211474 Accepted gallic acid and gallate [none] 1212625 Accepted very quick GO:0005551 ubiquitin [none] 1214073 Accepted M disc GO:0031430 1214235 Accepted BARD1/BRCA1 complex GO:0031436 1214245 Accepted neg.reg of 3' pre-mrna cleavage GO:0031437-31442 1214247 Accepted nuclear retention GO:0051457 1214280 Fixed DNA polymerase 2 things.... [none] 1214290 Accepted ntr: Dbf4 dependent kinase complex GO:0031431 1214394 Accepted chromatin assembly - new term request GO:0031497 GO:0031498 1215577 Accepted Telethonin binding GO:0031433 1215598 Accepted Titin binding GO:0031432 1215965 Accepted ntr: microbial collagenase GO:0051405 1215973 Accepted ntr: clostripain activity GO:0051404 1216316 Accepted MAPKKK binding (new term request) GO:0031434-31435 1216420 Accepted contraction muscle GO:0031443-31454 1217053 Accepted Xylanase inhibitor activity GO:0051421-51423 1217062 Accepted ABC transporter synonyms [none] 1217195 Accepted ntr: polyhedral organelles GO:0031469-31472 1217455 Accepted myosin III binding GO:0031473 1217467 Accepted myosin V GO:0031474-31489 1217482 Rejected missing parent? alpha-glucosidase activity [none] 1218067 Accepted ntr : stress signalling MAPK cascade GO:0051403 1218098 Accepted ntr: Tea1 cell-end complex GO:0031500 1218182 Accepted missing parent? nuclear org and bio [none] 1218207 Accepted ntr: nuclear envelope reassembly GO:0031468 1218290 Accepted ntr: nucleosome binding GO:0031491 1218297 Accepted trr: propose to change parent for 'chromatin binding' GO:0031490-31493 1219746 Accepted photosystem I assembly GO:0048564 1219751 Fixed merge two myosin terms [none] 1220215 Accepted chromatin silencing/heterochromatin formation GO:0031507-31509 1220222 Accepted arginine aminopeptidase GO:0051397-51399 1220274 Accepted ntr: kinetochore assembly GO:0051382-51383 1220311 Accepted ntr: protein complex localization GO:0031503 1220325 Duplicate arginine aminopeptidase [none] 1220650 Fixed Missing synonyms: G-protein coupled receptor terms [none] 1220653 Accepted TRAMP complex - New component ontology term GO:0031499 1221157 Fixed tpv: mannosyltransferase complex GO:0031501 GO:0031502 1221175 Accepted missing terms: cell wall or/bio GO:0031504-31506 1221410 Accepted ntr: tRNA acetyltransferase activity GO:0051391 GO:0051392 1221754 Accepted FATZ binding GO:0051373-51376 1221831 Accepted missing parentfor protein amino acid galactosylatio [none] 1223975 Accepted parent amine metabolism, nitrogen compound met [none] 1224173 Fixed actinin binding [none] 1224175 Accepted nonmuscle actinin binding; muscle actinin binding GO:0051371 GO:0051372 1224247 Accepted ntr: SUMO activating enzyme complex GO:0031510 1224905 Accepted ZASP binding GO:0051370 1225172 Accepted inactivation of MAPKK and MAPKKK GO:0051389 GO:0051390 1225374 Accepted New child of "neurotransmitters binding" GO:0051378-51381 1225396 Accepted child of "response to glucocorticoid stimulus" GO:0051384 GO:0051385 1225441 Rejected child of "response to lithium ion" [none] 1225473 Rejected child of "response to drug" [none] 1225536 Accepted programmed cell death, neuronal cells GO:0051402 1225538 Accepted regulation of NGF receptor signaling pathway GO:0051386-51388 1226134 Accepted alpha actinin binding GO:0051393 1226153 Accepted NFG receptor again GO:0051394-51396 1226172 Works For Me electron transport query [none] 1226287 Accepted CH domain binding GO:0051401 1226383 Accepted child of "protein domain specific binding" GO:0051400 1226856 Accepted beta-actinin binding GO:0051406 1226960 Accepted ALP binding GO:0051411 1227015 Accepted child of "response to glucocorticoid stimulus" GO:0051412 GO:0051413 GO:0051414 1227085 Accepted ntr:interphase microtubule nucleation GO:0051415 GO:0051417 GO:0051418 1228076 Accepted myotilin binding GO:0051416 1228089 Accepted nebulin binding, nebulette binding GO:0051419 GO:0051420 1228119 Accepted query protein geranylgeranyltransferases [none] 1228190 Accepted myopalladin binding GO:0043411 1228214 Fixed MP: heterochromatin formation GO:0031507 [none] 1228330 Fixed conversion of met-mp: tRNAf to fmet-tRNA; GOid=GO:0001718 GO:0043399 1228471 Accepted MF: PTB domain binding GO:0051425 1228865 Accepted child of BH domain binding GO:0051400 GO:0051432 GO:0051433 GO:0051434 GO:0051435 1228887 Accepted child of "polypeptide hormone binding" GO:0051424 1228901 Accepted CRH receptor activity GO:0043404 1228973 Accepted receptor binding GO:0051427-51431 1229000 Accepted hormone secretion GO:0043396 GO:0043397 1229029 Accepted HLH domain binding GO:0043398 1229092 Accepted cortisol secretion GO:0043400 1229599 Accepted myoblast migration GO:0051451 1229607 Accepted hormone binding GO:0051448 GO:0051449 1229634 Accepted myoblast proliferation GO:0051450 1229681 Accepted mediated signaling GO:0043401 GO:0043402 1229740 Accepted skeletal muscle regeneration GO:0043403 1229778 Fixed ntr: neg reg MAPKKK cascade GO:0043405 GO:0043406 GO:0043407 GO:0043408 GO:0043409 GO:0043410 1230331 Accepted child of "cortisol secretion" GO:0051462 GO:0051463-51466 1230356 Accepted adrenocorticotropin secretion GO:0051458 GO:0051459 GO:0051460 GO:0051461 Statistics: biological_process: 9843 terms, 97.2% defined (9568 terms defined) cellular_component: 1679 terms, 94.8% defined (1591 terms defined) molecular_function: 7559 terms, 91.1% defined (6889 terms defined) Total: 19081 terms, 94.6% defined (18048 terms defined) Term errors none