GO Monthly Release Notes for February 2005 ======================== Generated on Mon Mar 7 15:03:12 2005 Files used: gene_ontology.obo OLD: version 3.743, 31:01:2005 17:22 NEW: version 3.802, 25:02:2005 15:42 goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in biological_process ontology (155 new terms) GO:0001942 GO:0009653 MGI D 1035336 hair follicle development GO:0001943 GO:0007582 MGI D 1035336 hair follicle maturation GO:0009653 GO:0001944 GO:0007275 MGI D 1035336 vasculature development GO:0001945 GO:0007275 MGI D 1035336 lymph vessel development GO:0001946 GO:0009653 MGI D 1035336 lymphangiogenesis GO:0001947 GO:0009653 MGI D 1035336 heart looping GO:0031162 GO:0008152 MAH D 1110910 sulfur incorporation into metallo-sulfur cluster GO:0031163 GO:0008152 MAH D 1110910 metallo-sulfur cluster assembly GO:0031167 GO:0006139 MAH D 1116329 rRNA methylation GO:0031168 GO:0008152 MAH D 1117949 ferrichrome metabolism GO:0031169 GO:0009058 MAH D 1117949 ferrichrome biosynthesis GO:0031170 GO:0008152 MAH D 1117949 ferricrocin metabolism GO:0031171 GO:0009058 MAH D 1117949 ferricrocin biosynthesis GO:0031173 GO:0009653 MAH D 1109256 otolith mineralization (sensu Tetrapoda) GO:0009790 GO:0031174 GO:0009653 MAH D 1109256 otolith mineralization (sensu Actinopterygii) GO:0009790 GO:0031175 GO:0009653 MAH D 1116458 neurite morphogenesis GO:0031178 GO:0009058 MAH D 1117949 siderophore biosynthesis, peptide formation GO:0031179 GO:0008152 MAH D 1117949 peptide modification GO:0031180 GO:0009058 MAH D 1117949 siderophore biosynthesis, peptide modification GO:0031181 GO:0009058 MAH D 1117949 achromobactin biosynthesis, peptide formation GO:0031182 GO:0009058 MAH D 1117949 achromobactin biosynthesis, peptide modification GO:0031183 GO:0009058 MAH D 1117949 chrysobactin biosynthesis, peptide formation GO:0031184 GO:0009058 MAH D 1117949 chrysobactin biosynthesis, peptide modification GO:0031185 GO:0009058 MAH D 1117949 ferricrocin biosynthesis, peptide formation GO:0031186 GO:0009058 MAH D 1117949 ferricrocin biosynthesis, peptide modification GO:0031187 GO:0009058 MAH D 1117949 pyochelin biosynthesis, peptide formation GO:0031188 GO:0009058 MAH D 1117949 pyochelin biosynthesis, peptide modification GO:0031189 GO:0006519 MAH D 1117949 siderophore biosynthesis from catechol, peptide formation GO:0009058 GO:0019748 GO:0031190 GO:0006519 MAH D 1117949 siderophore biosynthesis from catechol, peptide modification GO:0009058 GO:0019748 GO:0031191 GO:0006519 MAH D 1117949 enterobactin biosynthesis, peptide formation GO:0009058 GO:0019748 GO:0031192 GO:0006519 MAH D 1117949 enterobactin biosynthesis, peptide modification GO:0009058 GO:0019748 GO:0031193 GO:0006519 MAH D 1117949 rhizobactin 1021 biosynthesis, peptide formation GO:0009058 GO:0019748 GO:0031194 GO:0006519 MAH D 1117949 rhizobactin 1021 biosynthesis, peptide modification GO:0009058 GO:0019748 GO:0031195 GO:0006519 MAH D 1117949 vibriobactin biosynthesis, peptide formation GO:0009058 GO:0019748 GO:0031196 GO:0006519 MAH D 1117949 vibriobactin biosynthesis, peptide modification GO:0009058 GO:0019748 GO:0031197 GO:0009058 MAH D 1117949 siderophore biosynthesis from hydroxamic acid, peptide formation GO:0031198 GO:0009058 MAH D 1117949 siderophore biosynthesis from hydroxamic acid, peptide modification GO:0031199 GO:0009058 MAH D 1117949 ferrichrome biosynthesis, peptide formation GO:0031200 GO:0009058 MAH D 1117949 ferrichrome biosynthesis, peptide modification GO:0031203 GO:0015031 MAH D 1110341 posttranslational protein membrane targeting, docking GO:0031204 GO:0015031 MAH D 1110341 posttranslational protein membrane targeting, translocation GO:0031214 GO:0009653 MAH D 1115275 biomineral formation GO:0031215 GO:0009653 MAH D 1115275 shell calcification GO:0031221 GO:0005975 MAH D 1035336 arabinan metabolism GO:0031222 GO:0005975 MAH D 1035336 arabinan catabolism GO:0009056 GO:0031223 GO:0007610 MAH D 1123239 auditory behavior GO:0009628 GO:0031247 GO:0007010 MAH D 1145799 actin rod formation GO:0043299 GO:0006810 JL D 1109197 immune cell degranulation GO:0043300 GO:0006810 JL D 1109197 regulation of immune cell degranulation GO:0043301 GO:0006810 JL D 1109197 negative regulation of immune cell degranulation GO:0043302 GO:0006810 JL D 1109197 positive regulation of immune cell degranulation GO:0043303 GO:0006810 JL D 1109197 mast cell degranulation GO:0009607 GO:0043304 GO:0006810 JL D 1109197 regulation of mast cell degranulation GO:0009607 GO:0043305 GO:0006810 JL D 1109197 negative regulation of mast cell degranulation GO:0009607 GO:0043306 GO:0006810 JL D 1109197 positive regulation of mast cell degranulation GO:0009607 GO:0043307 GO:0009607 JL D 1109197 eosinophil activation GO:0043308 GO:0006810 JL D 1109197 eosinophil degranulation GO:0009607 GO:0043309 GO:0006810 JL D 1109197 regulation of eosinophil degranulation GO:0009607 GO:0043310 GO:0006810 JL D 1109197 negative regulation of eosinophil degranulation GO:0009607 GO:0043311 GO:0006810 JL D 1109197 positive regulation of eosinophil degranulation GO:0009607 GO:0043312 GO:0006810 JL D 1109197 neutrophil degranulation GO:0006950 GO:0009605 GO:0009607 GO:0043313 GO:0006810 JL D 1109197 regulation of neutrophil degranulation GO:0006950 GO:0009605 GO:0009607 GO:0043314 GO:0006810 JL D 1109197 negative regulation of neutrophil degranulation GO:0006950 GO:0009605 GO:0009607 GO:0043315 GO:0006810 JL D 1109197 positive regulation of neutrophil degranulation GO:0006950 GO:0009605 GO:0009607 GO:0043316 GO:0006810 JL D 1109197 cytotoxic T-cell degranulation GO:0008219 GO:0009607 GO:0043317 GO:0006810 JL D 1109197 regulation of cytotoxic T-cell degranulation GO:0008219 GO:0009607 GO:0043318 GO:0006810 JL D 1109197 negative regulation of cytotoxic T-cell degranulation GO:0008219 GO:0009607 GO:0043319 GO:0006810 JL D 1109197 positive regulation of cytotoxic T-cell degranulation GO:0008219 GO:0009607 GO:0043320 GO:0006810 JL D 1109197 natural killer cell degranulation GO:0008219 GO:0009607 GO:0043321 GO:0006810 JL D 1109197 regulation of natural killer cell degranulation GO:0008219 GO:0009607 GO:0043322 GO:0006810 JL D 1109197 negative regulation of natural killer cell degranulation GO:0008219 GO:0009607 GO:0043323 GO:0006810 JL D 1109197 positive regulation of natural killer cell degranulation GO:0008219 GO:0009607 GO:0043324 GO:0007275 JL D 1099556 pigment metabolism during pigmentation GO:0019748 GO:0043326 GO:0009628 JL D 1115837 chemotaxis to folate GO:0043327 GO:0009628 JL D 1115837 chemotaxis to cAMP GO:0043328 GO:0009056 JL D 1110305 protein-vacuolar targeting during ubiquitin-dependent protein catabolism via the MVB pathway GO:0015031 GO:0019538 GO:0043329 GO:0009056 JL D 1110305 protein-membrane targeting during ubiquitin-dependent protein catabolism via the MVB pathway GO:0015031 GO:0019538 GO:0043330 GO:0006950 JL D 1067569 response to exogenous dsRNA GO:0009605 GO:0009607 GO:0043331 GO:0009607 JL D 1067569 response to dsRNA GO:0048516 GO:0009653 JIC D 1097118 trichome initiation (sensu Magnoliophyta) GO:0030154 GO:0048517 GO:0009653 JIC D 1097118 positive regulation of trichome initiation (sensu Magnoliophyta) GO:0030154 GO:0048518 GO:0008150 JIC D 1124666 positive regulation of biological process GO:0048519 GO:0008150 JIC D 1124666 negative regulation of biological process GO:0048520 GO:0007610 JIC D 1124666 positive regulation of behavior GO:0048521 GO:0007610 JIC D 1124666 negative regulation of behavior GO:0048522 GO:0008150 JIC D 1124666 positive regulation of cellular process GO:0048523 GO:0008150 JIC D 1124666 negative regulation of cellular process GO:0048524 GO:0016032 JIC D 1124666 positive regulation of viral life cycle GO:0048525 GO:0016032 JIC D 1124666 negative regulation of viral life cycle GO:0048526 GO:0009653 JIC D 1035336 wing expansion GO:0050000 GO:0007582 JIC D 1035336 chromosome localization GO:0051301 GO:0007582 AI D cell division GO:0051302 GO:0007582 AI D regulation of cell division GO:0051303 GO:0007582 AI D establishment of chromosome localization GO:0051304 GO:0007582 AI D chromosome separation GO:0051305 GO:0007582 AI D chromosome movement towards spindle pole GO:0051306 GO:0007049 AI D mitotic chromosome separation GO:0051307 GO:0007049 AI D meiotic chromosome separation GO:0051308 GO:0007049 AI D male meiosis chromosome separation GO:0051309 GO:0007049 AI D female meiosis chromosome separation GO:0051310 GO:0007582 AI D metaphase plate congression GO:0051311 GO:0007049 AI D meiotic metaphase plate congression GO:0051312 GO:0006996 AI D chromosome decondensation GO:0051313 GO:0007582 AI D attachment of spindle microtubules to chromosome GO:0051314 GO:0007049 AI D attachment of spindle microtubules to mitotic chromosome GO:0051315 GO:0007049 AI D attachment of spindle microtubules to kinetochore during mitosis GO:0051316 GO:0007049 AI D attachment of spindle microtubules to kinetochore during meiosis GO:0051317 GO:0007049 AI D attachment of spindle microtubules to meiotic chromosome GO:0051318 GO:0007049 AI D G1 phase GO:0051319 GO:0007049 AI D G2 phase GO:0051320 GO:0007049 AI D S phase GO:0051321 GO:0007049 AI D meiotic cell cycle GO:0051322 GO:0007049 AI D anaphase GO:0051323 GO:0007049 AI D metaphase GO:0051324 GO:0007049 AI D prophase GO:0051325 GO:0007049 AI D interphase GO:0051326 GO:0007049 AI D telophase GO:0051327 GO:0007049 AI D M phase of meiotic cell cycle GO:0051328 GO:0007049 AI D interphase of meiotic cell cycle GO:0051329 GO:0007049 AI D interphase of mitotic cell cycle GO:0051330 GO:0007049 AI D G1 phase of meiotic cell cycle GO:0051331 GO:0007049 AI D G2 phase of meiotic cell cycle GO:0051332 GO:0007049 AI D S phase of meiotic cell cycle GO:0051333 GO:0007049 AI D meiotic nuclear envelope reassembly GO:0016043 GO:0051334 GO:0007049 AI D meiosis I nuclear envelope reassembly GO:0016043 GO:0051335 GO:0007049 AI D meiosis II nuclear envelope reassembly GO:0016043 GO:0051336 GO:0008150 AI D regulation of hydrolase activity GO:0051337 GO:0007582 AI D amitosis GO:0051338 GO:0008150 AI D regulation of transferase activity GO:0051339 GO:0008150 AI D regulation of lyase activity GO:0051340 GO:0008150 AI D regulation of ligase activity GO:0051341 GO:0008150 AI D regulation of oxidoreductase activity GO:0051342 GO:0008150 AI D 1145680 regulation of cyclic nucleotide phosphodiesterase activity GO:0051343 GO:0008150 AI D 1145680 positive regulation of cyclic nucleotide phosphodiesterase activity GO:0051344 GO:0008150 AI D 1145680 negative regulation of cyclic nucleotide phosphodiesterase activity GO:0051345 GO:0008150 AI D positive regulation of hydrolase activity GO:0051346 GO:0008150 AI D negative regulation of hydrolase activity GO:0051347 GO:0008150 AI D positive regulation of transferase activity GO:0051348 GO:0008150 AI D negative regulation of transferase activity GO:0051349 GO:0008150 AI D positive regulation of lyase activity GO:0051350 GO:0008150 AI D negative regulation of lyase activity GO:0051351 GO:0008150 AI D positive regulation of ligase activity GO:0051352 GO:0008150 AI D negative regulation of ligase activity GO:0051353 GO:0008150 AI D positive regulation of oxidoreductase activity GO:0051354 GO:0008150 AI D negative regulation of oxidoreductase activity GO:0051355 GO:0009605 AI D proprioception during equilibrioception GO:0051356 GO:0009605 AI D 1144004 visual perception during equilibrioception GO:0051357 GO:0006464 AI D peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one GO:0051358 GO:0006464 AI D peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine GO:0051359 GO:0006464 AI D peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine GO:0051360 GO:0006464 AI D peptide cross-linking via L-asparagine 5-imidazolinone glycine GO:0051361 GO:0006464 AI D peptide cross-linking via L-lysine 5-imidazolinone glycine GO:0051362 GO:0006464 AI D peptide cross-linking via 2-tetrahydropyridinyl-5-imidazolinone glycine GO:0051363 GO:0005975 AI D peptidoglycan-protein cross-linking via L-alanyl-pentaglycyl-murein GO:0006464 GO:0009058 GO:0016043 GO:0051364 GO:0006464 AI D N-terminal peptidyl-proline N-formylation New obsoletions in biological_process ontology GO:0001557, metabolism resulting in cell growth: is redundant with other terms; obsoleted as part of the metabolism rearrangements. GO:0006619, SRP-independent cotranslational protein-membrane targeting: there is no evidence for the existence of this process. GO:0019675, NAD phosphorylation and dephosphorylation: represents a process, NAD dephosphorylation, that does not exist. GO:0045319, SRP-independent cotranslational protein-membrane targeting, translocation: there is no evidence for the existence of this process. Term name changes in biological_process ontology GO:0001649: osteoblast cell differentiation --> osteoblast differentiation GO:0001742: oenocyte cell differentiation --> oenocyte differentiation GO:0006739: NADPH metabolism --> NADP metabolism GO:0006741: NADPH biosynthesis --> NADP biosynthesis GO:0006742: NADPH catabolism --> NADP catabolism GO:0007079: mitotic chromosome movement --> mitotic chromosome movement towards spindle pole GO:0009237: siderochrome metabolism --> siderophore metabolism GO:0009297: fimbrial biogenesis --> fimbriae biogenesis GO:0009849: indoleacetic acid biosynthesis, tryptophan-independent --> tryptophan-independent indoleacetic acid biosynthesis GO:0009935: nutrient uptake --> nutrient import GO:0009994: oocyte cell differentiation --> oocyte differentiation GO:0010002: cardioblast cell differentiation --> cardioblast differentiation GO:0010054: trichoblast cell differentiation --> trichoblast differentiation GO:0015891: siderochrome transport --> siderophore transport GO:0015892: iron-siderochrome transport --> iron-siderophore transport GO:0016344: meiotic chromosome movement --> meiotic chromosome movement towards spindle pole GO:0016345: female meiotic chromosome movement --> female meiotic chromosome movement towards spindle pole GO:0016346: male meiotic chromosome movement --> male meiotic chromosome movement towards spindle pole GO:0019250: cobalamin biosynthesis, aerobic --> aerobic cobalamin biosynthesis GO:0019251: cobalamin biosynthesis, anaerobic --> anaerobic cobalamin biosynthesis GO:0019288: isopentenyl diphosphate biosynthesis, mevalonate-independent --> mevalonate-independent isopentenyl diphosphate biosynthesis GO:0019290: siderochrome biosynthesis --> siderophore biosynthesis GO:0019539: siderochrome biosynthesis from hydroxamic acid --> siderophore biosynthesis from hydroxamic acid GO:0019540: siderochrome biosynthesis from catechol --> siderophore biosynthesis from catechol GO:0030098: lymphocyte cell differentiation --> lymphocyte differentiation GO:0030174: DNA replication licensing --> regulation of DNA replication initiation GO:0030216: keratinocyte cell differentiation --> keratinocyte differentiation GO:0030218: erythrocyte cell differentiation --> erythrocyte differentiation GO:0030219: megakaryocyte cell differentiation --> megakaryocyte differentiation GO:0030222: eosinophil cell differentiation --> eosinophil differentiation GO:0030223: neutrophil cell differentiation --> neutrophil differentiation GO:0030224: monocyte cell differentiation --> monocyte differentiation GO:0030225: macrophage cell differentiation --> macrophage differentiation GO:0030316: osteoclast cell differentiation --> osteoclast differentiation GO:0030318: melanocyte cell differentiation --> melanocyte differentiation GO:0030706: oocyte cell differentiation (sensu Insecta) --> oocyte differentiation (sensu Insecta) GO:0030851: granulocyte cell differentiation --> granulocyte differentiation GO:0031147: 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one] metabolism --> 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one metabolism GO:0031148: 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one] biosynthesis --> 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one biosynthesis GO:0035163: embryonic hemocyte cell differentiation (sensu Arthropoda) --> embryonic hemocyte differentiation (sensu Arthropoda) GO:0035164: embryonic plasmatocyte cell differentiation --> embryonic plasmatocyte differentiation GO:0035168: lymph gland hemocyte cell differentiation (sensu Arthropoda) --> lymph gland hemocyte differentiation (sensu Arthropoda) GO:0035169: lymph gland plasmatocyte cell differentiation --> lymph gland plasmatocyte differentiation GO:0035171: lamellocyte cell differentiation --> lamellocyte differentiation GO:0042784: active immune evasion via modulation of complement system --> active immune evasion via regulation of complement system GO:0042785: active immune evasion via modulation of host-cytokine network --> active immune evasion via regulation of host-cytokine network GO:0042786: active immune evasion via modulation of antigen-processing or presentation pathway --> active immune evasion via regulation of antigen-processing or presentation pathway GO:0045444: adipocyte cell differentiation --> adipocyte differentiation GO:0045445: myoblast cell differentiation --> myoblast differentiation GO:0046652: thymocyte cell differentiation --> thymocyte differentiation GO:0050872: white adipocyte cell differentiation --> white adipocyte differentiation GO:0050873: brown adipocyte cell differentiation --> brown adipocyte differentiation GO:0050933: early stripe melanocyte cell differentiation --> early stripe melanocyte differentiation GO:0050934: late stripe melanocyte cell differentiation --> late stripe melanocyte differentiation GO:0050935: iridophore cell differentiation --> iridophore differentiation GO:0050936: xanthophore cell differentiation --> xanthophore differentiation New definitions for biological_process ontology terms (10 new definitions) GO:0006116, NADH oxidation GO:0006267, pre-replicative complex formation and maintenance GO:0009271, phage shock GO:0016226, iron-sulfur cluster assembly GO:0019652, propionate fermentation GO:0019656, heterolactate fermentation GO:0019659, lactate fermentation GO:0019660, glycolytic fermentation GO:0019661, homolactate fermentation GO:0019662, non-glycolytic fermentation New term merges in biological_process ontology GO:0006736 has been merged into GO:0009435, NAD biosynthesis GO:0006737 has been merged into GO:0019677, NAD catabolism Term movements in biological_process ontology: Terms movements under GO Slim term 'protein modification ; GO:0006464' + GO:0006324, S-phase regulated histone modification + GO:0016570, histone modification + GO:0031056, regulation of histone modification + GO:0031057, negative regulation of histone modification + GO:0031058, positive regulation of histone modification Terms movements under GO Slim term 'transport ; GO:0006810' + GO:0001820, serotonin secretion + GO:0001821, histamine secretion + GO:0007269, neurotransmitter secretion + GO:0046928, regulation of neurotransmitter secretion + GO:0046929, negative regulation of neurotransmitter secretion + GO:0048242, epinephrine secretion + GO:0048243, norepinephrine secretion + GO:0050432, catecholamine secretion + GO:0050433, regulation of catecholamine secretion Terms movements under GO Slim term 'organelle organization and biogenesis ; GO:0006996' - GO:0006896, Golgi to vacuole transport - GO:0007034, vacuolar transport - GO:0007035, vacuolar acidification - GO:0007037, vacuolar phosphate transport - GO:0007038, endocytosed protein transport to vacuole + GO:0007076, mitotic chromosome condensation + GO:0007083, mitotic chromosome decondensation + GO:0007098, centrosome cycle + GO:0007099, centriole replication + GO:0007100, mitotic centrosome separation + GO:0007101, male meiosis centrosome cycle + GO:0007103, spindle pole body duplication in nuclear envelope + GO:0010032, meiotic chromosome condensation + GO:0030261, chromosome condensation + GO:0030263, apoptotic chromosome condensation + GO:0030474, spindle pole body duplication + GO:0030997, regulation of centriole-centriole cohesion + GO:0031023, microtubule organizing center organization and biogenesis + GO:0031024, interphase microtubule organizing center formation + GO:0031046, spindle pole body duplication in cytoplasm - GO:0045018, retrograde transport, vacuole to Golgi + GO:0046599, regulation of centriole replication + GO:0046600, negative regulation of centriole replication + GO:0046601, positive regulation of centriole replication + GO:0046602, regulation of mitotic centrosome separation + GO:0046603, negative regulation of mitotic centrosome separation + GO:0046604, positive regulation of mitotic centrosome separation + GO:0046605, regulation of centrosome cycle + GO:0046606, negative regulation of centrosome cycle + GO:0046607, positive regulation of centrosome cycle + GO:0051178, meiotic chromosome decondensation + GO:0051297, centrosome organization and biogenesis + GO:0051298, centrosome duplication + GO:0051299, centrosome separation + GO:0051300, spindle pole body organization and biogenesis Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010' - GO:0000073, spindle pole body separation - GO:0007098, centrosome cycle - GO:0007099, centriole replication - GO:0007100, mitotic centrosome separation - GO:0007101, male meiosis centrosome cycle - GO:0007103, spindle pole body duplication in nuclear envelope - GO:0008608, attachment of spindle microtubules to kinetochore - GO:0030471, spindle pole body and microtubule cycle (sensu Fungi) - GO:0030474, spindle pole body duplication - GO:0030997, regulation of centriole-centriole cohesion - GO:0031023, microtubule organizing center organization and biogenesis - GO:0031024, interphase microtubule organizing center formation - GO:0031046, spindle pole body duplication in cytoplasm - GO:0031134, sister chromatid biorientation - GO:0046599, regulation of centriole replication - GO:0046600, negative regulation of centriole replication - GO:0046601, positive regulation of centriole replication - GO:0046602, regulation of mitotic centrosome separation - GO:0046603, negative regulation of mitotic centrosome separation - GO:0046604, positive regulation of mitotic centrosome separation - GO:0046605, regulation of centrosome cycle - GO:0046606, negative regulation of centrosome cycle - GO:0046607, positive regulation of centrosome cycle - GO:0051297, centrosome organization and biogenesis - GO:0051298, centrosome duplication - GO:0051299, centrosome separation - GO:0051300, spindle pole body organization and biogenesis Terms movements under GO Slim term 'cell cycle ; GO:0007049' + GO:0000132, establishment of mitotic spindle orientation - GO:0000280, nuclear division - GO:0000731, DNA synthesis during DNA repair - GO:0000734, gene conversion at mating-type locus, DNA repair synthesis - GO:0000819, sister chromatid segregation - GO:0001312, replication of extrachromosomal rDNA circles during replicative cell aging - GO:0001314, replication of extrachromosomal circular DNA during replicative cell aging - GO:0001326, replication of extrachromosomal circular DNA - GO:0006260, DNA replication - GO:0006261, DNA-dependent DNA replication - GO:0006264, mitochondrial DNA replication - GO:0006267, pre-replicative complex formation and maintenance - GO:0006268, DNA unwinding - GO:0006269, DNA replication, synthesis of RNA primer - GO:0006270, DNA replication initiation - GO:0006271, DNA strand elongation - GO:0006272, leading strand elongation - GO:0006273, lagging strand elongation - GO:0006274, DNA replication termination - GO:0006275, regulation of DNA replication - GO:0006276, plasmid maintenance - GO:0006277, DNA amplification - GO:0006278, RNA-dependent DNA replication - GO:0006279, premeiotic DNA synthesis - GO:0006298, mismatch repair - GO:0006299, short patch mismatch repair system - GO:0006300, long patch mismatch repair system - GO:0007059, chromosome segregation - GO:0007062, sister chromatid cohesion - GO:0007063, regulation of sister chromatid cohesion - GO:0008156, negative regulation of DNA replication - GO:0008608, attachment of spindle microtubules to kinetochore - GO:0009561, megagametophyte nuclear division - GO:0010032, meiotic chromosome condensation - GO:0020014, schizogony - GO:0030174, regulation of DNA replication initiation - GO:0030261, chromosome condensation - GO:0030263, apoptotic chromosome condensation - GO:0030541, plasmid partitioning - GO:0030542, plasmid partitioning (sensu Bacteria) - GO:0030543, 2-micrometer plasmid partitioning - GO:0031134, sister chromatid biorientation + GO:0040001, establishment of mitotic spindle localization - GO:0042023, DNA endoreduplication - GO:0042024, DNA endoreduplication initiation - GO:0043111, replication fork blocking - GO:0043137, DNA replication, removal of RNA primer - GO:0043150, DNA synthesis during double-strand break repair via homologous recombination - GO:0043151, DNA synthesis during double-strand break repair via single-strand annealing - GO:0045004, DNA replication proofreading - GO:0045005, maintenance of fidelity during DNA-dependent DNA replication - GO:0045740, positive regulation of DNA replication - GO:0045875, negative regulation of sister chromatid cohesion - GO:0045876, positive regulation of sister chromatid cohesion - GO:0051104, DNA ligation during DNA-dependent DNA replication + GO:0051295, establishment of meiotic spindle localization + GO:0051296, establishment of meiotic spindle orientation + GO:0051298, centrosome duplication Terms movements under GO Slim term 'development ; GO:0007275' - GO:0006582, melanin metabolism - GO:0006583, melanin biosynthesis from tyrosine - GO:0006782, protoporphyrinogen IX biosynthesis - GO:0006783, heme biosynthesis - GO:0006784, heme a biosynthesis - GO:0006785, heme b biosynthesis - GO:0006786, heme c biosynthesis - GO:0006788, heme oxidation - GO:0008055, ocellus pigment biosynthesis - GO:0015994, chlorophyll metabolism - GO:0015995, chlorophyll biosynthesis - GO:0015996, chlorophyll catabolism - GO:0019352, protoporphyrinogen IX biosynthesis from glycine - GO:0019353, protoporphyrinogen IX biosynthesis from glutamate - GO:0019354, siroheme biosynthesis - GO:0030493, bacteriochlorophyll metabolism - GO:0030494, bacteriochlorophyll biosynthesis - GO:0030495, bacteriochlorophyll catabolism - GO:0035006, melanization defense response - GO:0035007, regulation of melanization defense response - GO:0035008, positive regulation of melanization defense response - GO:0035009, negative regulation of melanization defense response - GO:0035011, melanotic encapsulation of foreign target - GO:0042167, heme catabolism - GO:0042168, heme metabolism - GO:0042438, melanin biosynthesis - GO:0042440, pigment metabolism - GO:0046148, pigment biosynthesis - GO:0046149, pigment catabolism - GO:0046150, melanin catabolism - GO:0046156, siroheme metabolism - GO:0046157, siroheme catabolism - GO:0046158, ocellus pigment metabolism - GO:0046159, ocellus pigment catabolism - GO:0046160, heme a metabolism - GO:0046161, heme a catabolism - GO:0046162, heme c metabolism - GO:0046163, heme c catabolism - GO:0046492, heme b metabolism - GO:0048021, regulation of melanin biosynthesis - GO:0048022, negative regulation of melanin biosynthesis - GO:0048023, positive regulation of melanin biosynthesis - GO:0048033, heme o metabolism - GO:0048034, heme o biosynthesis - GO:0048035, heme o catabolism Terms movements under GO Slim term 'physiological process ; GO:0007582' + GO:0000280, nuclear division + GO:0000819, sister chromatid segregation + GO:0000910, cytokinesis + GO:0000911, cytokinesis by cell plate formation + GO:0000913, preprophase band formation + GO:0000916, cytokinesis, contractile ring contraction + GO:0000917, barrier septum formation + GO:0000918, selection of site for barrier septum formation + GO:0000919, cell plate formation + GO:0000920, cell separation during cytokinesis + GO:0000921, septin ring assembly - GO:0001820, serotonin secretion - GO:0001821, histamine secretion + GO:0006276, plasmid maintenance + GO:0007049, cell cycle + GO:0007059, chromosome segregation + GO:0007062, sister chromatid cohesion + GO:0007063, regulation of sister chromatid cohesion + GO:0007105, cytokinesis, site selection + GO:0007107, membrane addition at site of cytokinesis + GO:0007108, cytokinesis, initiation of separation + GO:0007109, cytokinesis, completion of separation + GO:0007112, male meiosis cytokinesis - GO:0007269, neurotransmitter secretion + GO:0007282, cystoblast cell division + GO:0008356, asymmetric cell division + GO:0008608, attachment of spindle microtubules to kinetochore + GO:0009561, megagametophyte nuclear division + GO:0009786, regulation of asymmetric cell division + GO:0010069, zygote asymmetric cytokinesis (sensu Magnoliophyta) + GO:0010070, zygote asymmetric cell division + GO:0010235, guard mother cell cytokinesis + GO:0017145, stem cell division + GO:0020014, schizogony + GO:0030541, plasmid partitioning + GO:0030542, plasmid partitioning (sensu Bacteria) + GO:0030543, 2-micrometer plasmid partitioning + GO:0030994, primary cell septum hydrolysis + GO:0030995, cell septum edging hydrolysis + GO:0031106, septin ring organization + GO:0031107, septin ring disassembly + GO:0031134, sister chromatid biorientation + GO:0040016, embryonic cleavage + GO:0042078, germ-line stem cell division + GO:0043093, binary fission + GO:0045034, neuroblast cell division + GO:0045035, sensory organ precursor cell division - GO:0045299, otolith mineralization + GO:0045769, negative regulation of asymmetric cell division + GO:0045770, positive regulation of asymmetric cell division + GO:0045875, negative regulation of sister chromatid cohesion + GO:0045876, positive regulation of sister chromatid cohesion - GO:0046928, regulation of neurotransmitter secretion - GO:0046929, negative regulation of neurotransmitter secretion + GO:0048103, somatic stem cell division + GO:0048132, female germ-line stem cell division + GO:0048133, male germ-line stem cell division + GO:0048141, female germ-line stem cell division (sensu Insecta) + GO:0048142, cystoblast cell division (sensu Insecta) - GO:0048242, epinephrine secretion - GO:0048243, norepinephrine secretion - GO:0050432, catecholamine secretion - GO:0050433, regulation of catecholamine secretion Terms movements under GO Slim term 'cell proliferation ; GO:0008283' - GO:0000282, bud site selection - GO:0000910, cytokinesis - GO:0000911, cytokinesis by cell plate formation - GO:0000912, cytokinesis, formation of actomyosin apparatus - GO:0000913, preprophase band formation - GO:0000914, phragmoplast formation - GO:0000915, cytokinesis, contractile ring formation - GO:0000916, cytokinesis, contractile ring contraction - GO:0000917, barrier septum formation - GO:0000918, selection of site for barrier septum formation - GO:0000919, cell plate formation - GO:0000920, cell separation during cytokinesis - GO:0000921, septin ring assembly - GO:0007049, cell cycle - GO:0007105, cytokinesis, site selection - GO:0007107, membrane addition at site of cytokinesis - GO:0007108, cytokinesis, initiation of separation - GO:0007109, cytokinesis, completion of separation - GO:0007112, male meiosis cytokinesis - GO:0007120, axial bud site selection - GO:0007121, bipolar bud site selection - GO:0007282, cystoblast cell division - GO:0008356, asymmetric cell division - GO:0009786, regulation of asymmetric cell division - GO:0010069, zygote asymmetric cytokinesis (sensu Magnoliophyta) - GO:0010070, zygote asymmetric cell division - GO:0010235, guard mother cell cytokinesis - GO:0017145, stem cell division - GO:0030994, primary cell septum hydrolysis - GO:0030995, cell septum edging hydrolysis - GO:0031106, septin ring organization - GO:0031107, septin ring disassembly - GO:0040016, embryonic cleavage - GO:0042078, germ-line stem cell division - GO:0043093, binary fission - GO:0045034, neuroblast cell division - GO:0045035, sensory organ precursor cell division - GO:0045769, negative regulation of asymmetric cell division - GO:0045770, positive regulation of asymmetric cell division - GO:0048103, somatic stem cell division - GO:0048132, female germ-line stem cell division - GO:0048133, male germ-line stem cell division - GO:0048141, female germ-line stem cell division (sensu Insecta) - GO:0048142, cystoblast cell division (sensu Insecta) Terms movements under GO Slim term 'catabolism ; GO:0009056' + GO:0006099, tricarboxylic acid cycle + GO:0019643, reductive tricarboxylic acid cycle + GO:0019644, reductive citric acid pathway Terms movements under GO Slim term 'response to biotic stimulus ; GO:0009607' + GO:0030422, RNA interference, production of siRNA + GO:0031050, dsRNA fragmentation + GO:0031051, scnRNA production + GO:0031053, primary microRNA processing + GO:0031054, pre-microRNA processing + GO:0035196, miRNA-mediated gene silencing, production of miRNAs Terms movements under GO Slim term 'morphogenesis ; GO:0009653' + GO:0042637, catagen + GO:0042638, exogen + GO:0042640, anagen Terms movements under GO Slim term 'embryonic development ; GO:0009790' + GO:0045299, otolith mineralization Terms movements under GO Slim term 'growth ; GO:0040007' + GO:0035001, dorsal trunk growth New terms in cellular_component ontology (37 new terms) GO:0031164 GO:0005773 MAH D 1116455 contractile vacuolar membrane GO:0031165 GO:0005773 MAH D 1116455 integral to contractile vacuolar membrane GO:0031166 GO:0005773 MAH D 1116455 integral to vacuolar membrane GO:0031201 GO:0005623 MAH D 1113250 SNARE complex GO:0031205 GO:0005783 MAH D 1110341 Sec complex GO:0031206 GO:0005783 MAH D 1110341 Sec complex-associated translocon complex GO:0031207 GO:0005783 MAH D 1035336 Sec62/Sec63 complex GO:0031209 GO:0005737 MAH D 1120939 SCAR complex GO:0031211 GO:0005783 MAH D 1121107 palmitoyltransferase complex GO:0031212 GO:0005739 MAH D 1117609 branched-chain alpha-ketoacid dehydrogenase complex GO:0031213 GO:0005654 MAH D 1123923 RSF complex GO:0031224 GO:0005623 MAH D 1035336 intrinsic to membrane GO:0031225 GO:0005623 MAH D 1035336 anchored to membrane GO:0031226 GO:0005886 MAH D 1035336 intrinsic to plasma membrane GO:0031227 GO:0005783 MAH D 1035336 intrinsic to endoplasmic reticulum membrane GO:0031228 GO:0005794 MAH D 1035336 intrinsic to Golgi membrane GO:0031229 GO:0005635 MAH D 1035336 intrinsic to nuclear inner membrane GO:0031230 GO:0030313 MAH D 1035336 intrinsic to outer membrane (sensu Gram-negative Bacteria) GO:0031231 GO:0005777 MAH D 1035336 intrinsic to peroxisomal membrane GO:0031232 GO:0005886 MAH D 1035336 extrinsic to external side of plasma membrane GO:0031233 GO:0005886 MAH D 1035336 intrinsic to external side of plasma membrane GO:0031234 GO:0005886 MAH D 1035336 extrinsic to internal side of plasma membrane GO:0031235 GO:0005886 MAH D 1035336 intrinsic to internal side of plasma membrane GO:0031236 GO:0005886 MAH D 1035336 extrinsic to external side of plasma membrane, in periplasmic space GO:0031237 GO:0005886 MAH D 1035336 intrinsic to external side of plasma membrane, in periplasmic space GO:0031238 GO:0005886 MAH D 1035336 extrinsic to external side of plasma membrane, in periplasmic space (sensu Gram-negative Bacteria) GO:0030313 GO:0031239 GO:0005886 MAH D 1035336 intrinsic to external side of plasma membrane, in periplasmic space (sensu Gram-negative Bacteria) GO:0030313 GO:0031240 GO:0030313 MAH D 1035336 external side of outer membrane GO:0031241 GO:0030313 MAH D 1035336 internal side of outer membrane GO:0031242 GO:0030313 MAH D 1035336 extrinsic to external side of outer membrane GO:0031243 GO:0030313 MAH D 1035336 intrinsic to external side of outer membrane GO:0031244 GO:0030313 MAH D 1035336 extrinsic to outer membrane (sensu Gram-negative Bacteria) GO:0031245 GO:0030313 MAH 1035336 extrinsic to internal side of outer membrane GO:0031246 GO:0030313 MAH 1035336 intrinsic to internal side of outer membrane GO:0031248 GO:0005575 MAH D 1143675 protein acetyltransferase complex GO:0031250 GO:0005737 MAH D 1149973 anaerobic ribonucleoside-triphosphate reductase complex GO:0043332 GO:0005623 JL D 1115452 mating projection tip New obsoletions in cellular_component ontology GO:0009351, dihydrolipoamide S-acyltransferase complex: dihydrolipoamide S-acyltransferase activity resides in a single polypeptide. Term name changes in cellular_component ontology GO:0001400: base of shmoo tip --> mating projection base GO:0005937: shmoo tip --> mating projection GO:0046658: extrinsic to plasma membrane, GPI-anchored --> anchored to plasma membrane Term movements in cellular_component ontology: Terms movements under GO Slim term 'intracellular ; GO:0005622' + GO:0009337, sulfite reductase complex (NADPH) Terms movements under GO Slim term 'cytoplasm ; GO:0005737' + GO:0005971, ribonucleoside-diphosphate reductase complex Terms movements under GO Slim term 'unlocalized protein complex ; GO:0005941' - GO:0005971, ribonucleoside-diphosphate reductase complex - GO:0009337, sulfite reductase complex (NADPH) New terms in molecular_function ontology (15 new terms) GO:0010241 GO:0003824 TAIR D 919200 ent-kaurene oxidase activity GO:0010242 GO:0003824 TAIR D 919200 oxygen evolving activity GO:0031172 GO:0003824 MAH D 1117949 ornithine N5-monooxygenase activity GO:0031176 GO:0016787 MAH D 1119464 endo-1,4-beta-xylanase activity GO:0031177 GO:0005488 MAH D 1117949 phosphopantetheine binding GO:0031202 GO:0003723 MAH D 818610 RNA splicing factor activity, transesterification mechanism GO:0031208 GO:0005515 MAH D 1120911 POZ domain binding GO:0031210 GO:0008289 MAH D 1122709 phosphatidylcholine binding GO:0031216 GO:0016787 MAH D 1124350 neopullulanase activity GO:0031217 GO:0016787 MAH D 1035336 glucan 1,4-beta-glucosidase activity GO:0031218 GO:0016787 MAH D 1035336 arabinogalactan endo-1,4-beta-galactosidase activity GO:0031219 GO:0016787 MAH D 1035336 levanase activity GO:0031220 GO:0016740 MAH D 1035336 maltodextrin phosphorylase activity GO:0031249 GO:0005515 MAH D 1150105 denatured protein binding GO:0043325 GO:0008289 JL D 1114206 phosphatidylinositol-3,4-bisphosphate binding New obsoletions in molecular_function ontology GO:0008248, pre-mRNA splicing factor activity: describes a biological process. GO:0030363, pre-mRNA cleavage factor activity: describes a biological process. GO:0030364, cleavage and polyadenylylation specificity factor activity: describes a cellular component. GO:0030365, cleavage stimulation factor activity: describes a cellular component. Term name changes in molecular_function ontology GO:0001646: cAMP receptor activity, chemotaxis --> cAMP receptor activity GO:0015343: siderochrome-iron transporter activity --> siderophore-iron transporter activity GO:0015344: siderochrome-iron (ferrioxamine) uptake transporter activity --> siderophore-iron (ferrioxamine) uptake transporter activity GO:0016881: acid-D-amino acid ligase activity --> acid-amino acid ligase activity GO:0042927: siderochrome transporter activity --> siderophore transporter activity GO:0050661: NADPH binding --> NADP binding New definitions for molecular_function ontology terms (1 new definitions) GO:0001646, cAMP receptor activity New term merges in molecular_function ontology GO:0051288 has been merged into GO:0051287, NAD binding Term movements in molecular_function ontology: Terms movements under GO Slim term 'nucleotide binding ; GO:0000166' + GO:0001646, cAMP receptor activity Terms movements under GO Slim term 'binding ; GO:0005488' - GO:0001646, cAMP receptor activity SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1002025 Fixed x-genesis [none] 1003901 Accepted dbxrefs standardized [none] 1062439 Rejected bipolar cell growth +parentage [none] 1064503 Fixed genome integrity [none] 1067569 Accepted new term suggestions from Incyte GO:0043257-43262 GO:0043273-43274 GO:0043276-43278 GO:0043282 GO:0043296 GO:0043330-43331 1071072 Accepted establishment and maintenance of localization GO:0051234-51238 1075115 Fixed vulval development (sensu Nematoda) [none] 1077620 Works For Me missing parent:GO:0009935 : nutrient uptake [none] 1086061 Accepted Regulation of protein amino acid phosphorylation GO:0001932-01934 1097118 Accepted plant trichome morphogenesis GO:0048516-48517 1099556 Fixed tpv: children of 'pigmentation ; GO:0048066' GO:0043324 1101744 Accepted body morphogenesis [none] 1105228 Works For Me regulation of transcription, meiotic [none] 1109182 Accepted determinate inflorescence development [none] 1109190 Fixed parentage DNA replication licensing [none] 1109197 Accepted Degranulation Terms GO:0043299-43323 1109256 Accepted otoconia and otolith mineralization GO:0031173-31174 1109582 Fixed Oxoglutarate dehydrogenase complex (sensu Bacteria) [none] 1109768 Fixed NAD and NADH [none] 1110305 Works For Me ubiquitin-dependent protein catabolism via the MVB pathway GO:0043328-43329 1110341 Accepted Sec complex and translocation terms GO:0031203-31206 1110855 None tpv chromatin mediated maintenence of transcription [none] 1110910 Accepted add parent?molybdenum incorporation GO:0031162-31163 1111040 Fixed extrinsic to plasma membrane, GPI-anchored" -change definiti [none] 1113118 Works For Me remind me.. [none] 1113250 Accepted SNARE complex GO:0031201 1113281 Works For Me centrosome cycle, centrosome duplication, centrosome separat [none] 1113524 Duplicate centrosome cycle, centrosome duplication, centrosome separat [none] 1113557 Fixed Sulfite reductase parentage [none] 1113845 Fixed GO:0031147/8 [none] 1114206 Accepted ntr: phosphatidylinositol-3,4-bisphosphate binding GO:0043325 1114370 Fixed is-a acetyl-CoA biosynthesis [none] 1114890 Accepted New definition for "transcription factor activity" (GO:3700) [none] 1115275 Accepted Shell calcification GO:0031214-31215 1115414 Fixed description of ribonucleoside reductase [none] 1115452 Accepted new term: conjugation tube tip GO:0043332 1115837 Accepted ntr: chemotaxis to folate, chemotaxis to cAMP GO:0043326-43327 1116115 Fixed parent disappeared ! histone modification [none] 1116120 Works For Me Fimbrium/pilus assembly [none] 1116230 Works For Me ntr proteasome binding [none] 1116329 Accepted ntr; rRNA methylation GO:0031167 1116455 Accepted new 'contractile vacuolar membrane' component terms GO:0031164-31166 1116458 Accepted neurogenesis and neurite morphogenesis GO:0031175 1117609 Fixed remove dihydrolipoamide S-acyltransferase GO:0031212 1117949 Accepted ntr ferrixchrome /ferricrocin biosynthsis GO:0031168-31172 GO:0031177-31200 1118004 Accepted parentage of GO:0006264 mito DNA replication [none] 1118820 Fixed bad parent returned! [none] 1119241 Fixed query: ubiquitin-protein ligase activity [none] 1119464 Accepted new term: endo-1,4-b-xylanase GO:0031176 1120911 Accepted POZ domain binding GO:0031208 1120939 Accepted new term: SCAR/WAVE complex GO:0031209 1121019 Fixed GO: 1646 cAMP receptor activity, chemotaxis [none] 1121107 Accepted NTR: palmitoyltransferase complex GO:0031211 1122374 Fixed GO:0006099 parent tricarboxylic acid cycle [none] 1122709 Accepted NTR: phosphatidylcholine binding GO:0031210 1123239 Accepted new term request: auditory behavior GO:0031223 1123923 Accepted new term request: RCF complex GO:0031213 1124263 Fixed typo in GO: 31143 [none] 1124350 Accepted new functions from EC #s GO:0031216-31122 1124666 Accepted positive regulation general parent term GO:0048518-48525 1126189 Fixed Correction of NK T-cell term names [none] 1143675 Accepted new term request: protein acetyltransferase complex GO:0031248 1144004 Fixed dubious parentage of visual perception? GO:0051356-51355 1145297 Fixed Incorrect DBREF 'Metacyc' [none] 1145417 Rejected enzyme activity missing relationship [none] 1145680 Accepted regulation of phosphodiesterase activity GO:0051342-51344 1145708 Accepted New synonym suggestion for hemopoiesis [none] 1145710 Accepted synonyms for BMP signaling pathway terms [none] 1145799 Accepted ntr: actin rod formation GO:0031247 1146107 Works For Me rhoptry [none] 1146258 Duplicate inflorescence morphogenesis [none] 1149973 Accepted anaerobic ribonucleoside-triphosphate reductase complex GO:0031250 1150105 Accepted new term: denatured protein binding GO:0031249 1151235 Duplicate specific snoRNP complex terms [none] 818610 Fixed function term for obsoletion GO:0030363 GO:0031202 848861 Works For Me transport GO:0006810 possible problem [none] 895635 None sporulation position query? [none] 919200 Accepted 4 new function terms from TAIR GO:0010241-10242 GO:0010210-10211 985345 Accepted development standard definition implementation [none] Statistics: biological_process: 9536 terms, 96.6% defined (9210 terms defined) cellular_component: 1569 terms, 94.1% defined (1477 terms defined) molecular_function: 7473 terms, 89.9% defined (6720 terms defined) Total: 18578 terms, 93.7% defined (17407 terms defined) Term errors none