GO Monthly Release Notes for November 2004 ======================== Generated on Mon Jan 24 12:50:42 2005 Files used: gene_ontology.obo OLD: version 3.563, 29:10:2004 13:21 NEW: version 3.634, 30:11:2004 17:59 goslim_generic Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in component ontology (14 new terms) GO:0043240 GO:0005654 JL D 1046944 Fanconi anaemia nuclear complex GO:0043245 GO:0005576 JL D 972645 extraorganismal space GO:0043246 GO:0005764 JL D 1058774 megasome GO:0043253 GO:0005840 JL D 1068713 chloroplast ribosome GO:0009536 GO:0043256 GO:0005578 JL D 1035336 laminin complex GO:0043257 GO:0005578 JL D 1035336 laminin-8 GO:0043258 GO:0005578 JL D 1035336 laminin-9 GO:0043259 GO:0005578 JL D 1035336 laminin-10 GO:0043260 GO:0005578 JL D 1035336 laminin-11 GO:0043261 GO:0005578 JL D 1035336 laminin-12 GO:0043263 GO:0005576 JL D 1072366 cellulosome GO:0043264 GO:0005576 JL D 1035336 extracellular non-membrane-bound organelle GO:0043265 GO:0005737 JL D 1072349 ectoplasm GO:0051233 GO:0005856 AI D 1035336 spindle midzone Term name changes in component ontology GO:0000934: porous septum --> porous cell septum GO:0000936: primary septum --> primary cell septum GO:0005576: extracellular --> extracellular region GO:0005607: laminin-2 complex --> laminin-2 GO:0009375: hydrogenase complex --> ferredoxin hydrogenase complex GO:0030428: septum --> cell septum GO:0030478: actin cap (sensu Fungi) --> actin cap GO:0030482: actin cable (sensu Fungi) --> actin cable GO:0042151: cnidocyst --> nematocyst GO:0043187: septum surface --> cell septum surface GO:0043188: septum edging --> cell septum edging GO:0051077: secondary septum (sensu Fungi) --> secondary cell septum New definitions for component ontology terms (4 new definitions) GO:0008023, transcription elongation factor complex GO:0016591, DNA-directed RNA polymerase II, holoenzyme GO:0016592, Srb-mediator complex GO:0016593, Cdc73/Paf1 complex New term merges in component ontology GO:0000134 has been merged into GO:0030427, site of polarized growth GO:0030483 has been merged into GO:0030427, site of polarized growth Term movements in component ontology: Terms movements under GO Slim term 'intracellular ; GO:0005622' + GO:0005856, cytoskeleton + GO:0016442, RNA-induced silencing complex Terms movements under GO Slim term 'nucleus ; GO:0005634' - GO:0035101, FACT complex Terms movements under GO Slim term 'nucleoplasm ; GO:0005654' + GO:0035101, FACT complex Terms movements under GO Slim term 'cytoplasm ; GO:0005737' - GO:0005856, cytoskeleton + GO:0005859, muscle myosin + GO:0005861, troponin complex + GO:0005862, muscle thin filament tropomyosin + GO:0005865, striated muscle thin filament + GO:0005950, anthranilate synthase complex Terms movements under GO Slim term 'cytosol ; GO:0005829' + GO:0008303, caspase complex Terms movements under GO Slim term 'unlocalized protein complex ; GO:0005941' - GO:0005950, anthranilate synthase complex - GO:0008303, caspase complex - GO:0016442, RNA-induced silencing complex New terms in function ontology (16 new terms) GO:0035273 GO:0005488 FB D 1063964 phthalate binding GO:0035274 GO:0005488 FB D 1063964 diphenyl phthalate binding GO:0035275 GO:0005488 FB D 1063964 dibutyl phthalate binding GO:0035276 GO:0005488 FB D 1063964 ethanol binding GO:0043236 GO:0005515 JL D 1058794 laminin binding GO:0043237 GO:0005515 JL D 1058794 laminin-1 binding GO:0043238 GO:0005515 JL D 1058794 laminin-2 binding GO:0043239 GO:0005515 JL D 1058794 laminin-4 binding GO:0043250 GO:0005215 JL D 1067666 sodium-dependent organic anion transporter activity GO:0043262 GO:0016787 JL D 1035336 adenosine-diphosphatase activity GO:0050381 GO:0003824 AI D 780191 unspecific monooxygenase activity GO:0051212 GO:0005488 AI D 1060207 vanadium ion binding GO:0051213 GO:0003824 AI D 1060182 dioxygenase activity GO:0051219 GO:0005515 AI D 957985 phosphoprotein binding GO:0051268 GO:0003824 AI D 1075148 alpha-keto amide reductase activity GO:0051269 GO:0003824 AI D 1075148 alpha-keto ester reductase activity New obsoletions in function ontology GO:0005514, calcium ion storage activity: represents a biological process. Term name changes in function ontology GO:0005476: carnitine:acyl carnitine carrier activity --> carnitine:acyl carnitine antiporter activity GO:0009671: nitrate(chlorate):hydrogen symporter activity --> nitrate:hydrogen symporter activity GO:0015401: urea active transporter activity --> urea:sodium symporter activity GO:0015431: conjugate transporter activity --> glutathione S-conjugate-exporting ATPase activity GO:0015650: lactate:hydrogen porter activity --> lactate:hydrogen symporter activity GO:0017032: potassium:amino acid transporter activity --> potassium:amino acid symporter activity GO:0042962: acridine:proton antiporter activity --> acridine:hydrogen antiporter activity GO:0045289: luciferase monooxygenase activity --> luciferin monooxygenase activity GO:0045309: phosphoprotein amino acid binding --> protein phosphorylated amino acid binding New definitions for function ontology terms (12 new definitions) GO:0005436, sodium:phosphate symporter activity GO:0005514, calcium ion storage activity GO:0008349, MAP kinase kinase kinase kinase activity GO:0008545, JUN kinase kinase activity GO:0015320, phosphate carrier activity GO:0015347, sodium-independent organic anion transporter activity GO:0015431, glutathione S-conjugate-exporting ATPase activity GO:0015583, beta-glucoside [arbutin-salicin-cellobiose] permease activity GO:0015650, lactate:hydrogen symporter activity GO:0016830, carbon-carbon lyase activity GO:0017153, sodium:dicarboxylate symporter activity GO:0019116, hydroxy-nicotine oxidase activity New term merges in function ontology GO:0016224 has been merged into GO:0004602, glutathione peroxidase activity GO:0016745 has been merged into GO:0016744, transferase activity, transferring aldehyde or ketonic groups GO:0016952 has been merged into GO:0004096, catalase activity GO:0016953 has been merged into GO:0004096, catalase activity GO:0016955 has been merged into GO:0016691, chloride peroxidase activity GO:0016956 has been merged into GO:0016691, chloride peroxidase activity GO:0016957 has been merged into GO:0016691, chloride peroxidase activity GO:0016958 has been merged into GO:0016691, chloride peroxidase activity GO:0045308 has been merged into GO:0005515, protein binding Term movements in function ontology: Terms movements under GO Slim term 'catalytic activity ; GO:0003824' - GO:0003832, beta-alanyl-dopamine hydrolase activity Terms movements under GO Slim term 'protein kinase activity ; GO:0004672' + GO:0047696, beta-adrenergic-receptor kinase activity + GO:0050063, low-density-lipoprotein kinase activity + GO:0050254, rhodopsin kinase activity + GO:0050321, tau-protein kinase activity + GO:0050359, tropomyosin kinase activity Terms movements under GO Slim term 'transporter activity ; GO:0005215' + GO:0005297, hydrogen:proline symporter activity - GO:0005313, L-glutamate transporter activity - GO:0005331, gamma-aminobutyric acid transporter activity - GO:0015185, L-gamma-aminobutyric acid transporter activity - GO:0015187, glycine transporter activity - GO:0015327, cystine:glutamate antiporter activity - GO:0015329, gamma-aminobutyric acid permease activity - GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity - GO:0015501, glutamate:sodium symporter activity + GO:0019829, cation-transporting ATPase activity + GO:0042625, ATPase activity, coupled to transmembrane movement of ions + GO:0043225, anion-transporting ATPase activity Terms movements under GO Slim term 'neurotransmitter transporter activity ; GO:0005326' - GO:0005297, hydrogen:proline symporter activity + GO:0005313, L-glutamate transporter activity + GO:0005331, gamma-aminobutyric acid transporter activity + GO:0015185, L-gamma-aminobutyric acid transporter activity + GO:0015187, glycine transporter activity + GO:0015259, glutamate channel activity + GO:0015327, cystine:glutamate antiporter activity + GO:0015329, gamma-aminobutyric acid permease activity + GO:0015495, gamma-aminobutyric acid:hydrogen symporter activity + GO:0015501, glutamate:sodium symporter activity Terms movements under GO Slim term 'kinase activity ; GO:0016301' + GO:0018720, phenol kinase activity + GO:0019158, mannokinase activity + GO:0019165, thiamin kinase activity + GO:0046316, gluconokinase activity + GO:0046404, polynucleotide 5'-hydroxyl-kinase activity + GO:0046522, S-methyl-5-thioribose kinase activity + GO:0047321, diphosphate-protein phosphotransferase activity + GO:0047322, [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity + GO:0047323, [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)] kinase activity + GO:0047324, phosphoenolpyruvate-glycerone phosphotransferase activity + GO:0047325, inositol-tetrakisphosphate 1-kinase activity + GO:0047326, inositol-tetrakisphosphate 5-kinase activity + GO:0047327, glycerol-3-phosphate-glucose phosphotransferase activity + GO:0047328, acyl-phosphate-hexose phosphotransferase activity + GO:0047329, phosphoramidate-hexose phosphotransferase activity + GO:0047330, polyphosphate-glucose phosphotransferase activity + GO:0047331, diphosphate-glycerol phosphotransferase activity + GO:0047332, diphosphate-serine phosphotransferase activity + GO:0047333, dihydrostreptomycin-6-phosphate 3'-alpha-kinase activity + GO:0047334, diphosphate-fructose-6-phosphate 1-phosphotransferase activity + GO:0047336, 5-methyldeoxycytidine-5'-phosphate kinase activity + GO:0047506, (deoxy)adenylate kinase activity + GO:0047507, (deoxy)nucleoside-phosphate kinase activity + GO:0047590, 5-dehydro-2-deoxygluconokinase activity + GO:0047601, acetate kinase (diphosphate) activity + GO:0047620, acylglycerol kinase activity + GO:0047628, ADP-thymidine kinase activity + GO:0047633, agmatine kinase activity + GO:0047649, alkylglycerol kinase activity + GO:0047650, alkylglycerone kinase activity + GO:0047666, ammonia kinase activity + GO:0047667, AMP-thymidine kinase activity + GO:0047700, beta-glucoside kinase activity + GO:0047715, hypotaurocyamine kinase activity + GO:0047758, branched-chain-fatty-acid kinase activity + GO:0047761, butyrate kinase activity + GO:0047764, caldesmon kinase activity + GO:0047814, D-arabinokinase activity + GO:0047841, dehydrogluconokinase activity + GO:0047848, dephospho-[reductase kinase] kinase activity + GO:0047878, erythritol kinase activity + GO:0047887, farnesyl-diphosphate kinase activity + GO:0047900, formate kinase activity + GO:0047912, galacturonokinase activity + GO:0047931, glucosamine kinase activity + GO:0047933, glucose-1,6-bisphosphate synthase activity + GO:0047937, glucose-1-phosphate phosphodismutase activity + GO:0047940, glucuronokinase activity + GO:0047944, glutamate 1-kinase activity + GO:0047973, guanidinoacetate kinase activity + GO:0047976, hamamelose kinase activity + GO:0047992, hydroxylysine kinase activity + GO:0050059, lombricine kinase activity + GO:0050073, macrolide 2'-kinase activity + GO:0050145, nucleoside-phosphate kinase activity + GO:0050146, nucleoside phosphotransferase activity + GO:0050154, opheline kinase activity + GO:0050165, pantetheine kinase activity + GO:0050190, phosphoglucokinase activity + GO:0050191, phosphoglycerate kinase (GTP) activity + GO:0050195, phosphoribokinase activity + GO:0050201, fucokinase activity + GO:0050222, protamine kinase activity + GO:0050225, pseudouridine kinase activity + GO:0050257, riboflavin phosphotransferase activity + GO:0050262, ribosylnicotinamide kinase activity + GO:0050276, scyllo-inosamine 4-kinase activity + GO:0050277, sedoheptulokinase activity + GO:0050299, streptomycin 3''-kinase activity + GO:0050300, streptomycin 6-kinase activity + GO:0050316, T2-induced deoxynucleotide kinase activity + GO:0050317, tagatose kinase activity + GO:0050324, taurocyamine kinase activity + GO:0050331, thiamin-diphosphate kinase activity + GO:0050354, triokinase activity + GO:0050369, [tyrosine 3-monooxygenase] kinase activity + GO:0050394, viomycin kinase activity + GO:0050400, xylitol kinase activity + GO:0050405, [acetyl-CoA carboxylase] kinase activity + GO:0050517, inositol-hexakisphosphate kinase activity Terms movements under GO Slim term 'transferase activity ; GO:0016740' - GO:0018720, phenol kinase activity - GO:0019158, mannokinase activity - GO:0019165, thiamin kinase activity - GO:0046316, gluconokinase activity - GO:0046404, polynucleotide 5'-hydroxyl-kinase activity - GO:0046522, S-methyl-5-thioribose kinase activity - GO:0047321, diphosphate-protein phosphotransferase activity - GO:0047322, [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity - GO:0047323, [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)] kinase activity - GO:0047324, phosphoenolpyruvate-glycerone phosphotransferase activity - GO:0047325, inositol-tetrakisphosphate 1-kinase activity - GO:0047326, inositol-tetrakisphosphate 5-kinase activity - GO:0047327, glycerol-3-phosphate-glucose phosphotransferase activity - GO:0047328, acyl-phosphate-hexose phosphotransferase activity - GO:0047329, phosphoramidate-hexose phosphotransferase activity - GO:0047330, polyphosphate-glucose phosphotransferase activity - GO:0047331, diphosphate-glycerol phosphotransferase activity - GO:0047332, diphosphate-serine phosphotransferase activity - GO:0047333, dihydrostreptomycin-6-phosphate 3'-alpha-kinase activity - GO:0047334, diphosphate-fructose-6-phosphate 1-phosphotransferase activity - GO:0047336, 5-methyldeoxycytidine-5'-phosphate kinase activity - GO:0047506, (deoxy)adenylate kinase activity - GO:0047507, (deoxy)nucleoside-phosphate kinase activity - GO:0047590, 5-dehydro-2-deoxygluconokinase activity - GO:0047601, acetate kinase (diphosphate) activity - GO:0047620, acylglycerol kinase activity - GO:0047628, ADP-thymidine kinase activity - GO:0047633, agmatine kinase activity - GO:0047649, alkylglycerol kinase activity - GO:0047650, alkylglycerone kinase activity - GO:0047666, ammonia kinase activity - GO:0047667, AMP-thymidine kinase activity - GO:0047696, beta-adrenergic-receptor kinase activity - GO:0047700, beta-glucoside kinase activity - GO:0047715, hypotaurocyamine kinase activity - GO:0047758, branched-chain-fatty-acid kinase activity - GO:0047761, butyrate kinase activity - GO:0047764, caldesmon kinase activity - GO:0047814, D-arabinokinase activity - GO:0047841, dehydrogluconokinase activity - GO:0047848, dephospho-[reductase kinase] kinase activity - GO:0047878, erythritol kinase activity - GO:0047887, farnesyl-diphosphate kinase activity - GO:0047900, formate kinase activity - GO:0047912, galacturonokinase activity - GO:0047931, glucosamine kinase activity - GO:0047933, glucose-1,6-bisphosphate synthase activity - GO:0047937, glucose-1-phosphate phosphodismutase activity - GO:0047940, glucuronokinase activity - GO:0047944, glutamate 1-kinase activity - GO:0047973, guanidinoacetate kinase activity - GO:0047976, hamamelose kinase activity - GO:0047992, hydroxylysine kinase activity - GO:0050059, lombricine kinase activity - GO:0050063, low-density-lipoprotein kinase activity - GO:0050073, macrolide 2'-kinase activity - GO:0050145, nucleoside-phosphate kinase activity - GO:0050146, nucleoside phosphotransferase activity - GO:0050154, opheline kinase activity - GO:0050165, pantetheine kinase activity - GO:0050190, phosphoglucokinase activity - GO:0050191, phosphoglycerate kinase (GTP) activity - GO:0050195, phosphoribokinase activity - GO:0050201, fucokinase activity - GO:0050222, protamine kinase activity - GO:0050225, pseudouridine kinase activity - GO:0050254, rhodopsin kinase activity - GO:0050257, riboflavin phosphotransferase activity - GO:0050262, ribosylnicotinamide kinase activity - GO:0050276, scyllo-inosamine 4-kinase activity - GO:0050277, sedoheptulokinase activity - GO:0050299, streptomycin 3''-kinase activity - GO:0050300, streptomycin 6-kinase activity - GO:0050316, T2-induced deoxynucleotide kinase activity - GO:0050317, tagatose kinase activity - GO:0050321, tau-protein kinase activity - GO:0050324, taurocyamine kinase activity - GO:0050331, thiamin-diphosphate kinase activity - GO:0050354, triokinase activity - GO:0050359, tropomyosin kinase activity - GO:0050369, [tyrosine 3-monooxygenase] kinase activity - GO:0050394, viomycin kinase activity - GO:0050400, xylitol kinase activity - GO:0050405, [acetyl-CoA carboxylase] kinase activity - GO:0050517, inositol-hexakisphosphate kinase activity Terms movements under GO Slim term 'hydrolase activity ; GO:0016787' + GO:0003832, beta-alanyl-dopamine hydrolase activity New terms in process ontology (115 new terms) GO:0001919 GO:0007165 MGI D 1035336 regulation of receptor recycling GO:0019538 GO:0001920 GO:0007165 MGI D 1035336 negative regulation of receptor recycling GO:0019538 GO:0001921 GO:0007165 MGI D 1035336 positive regulation of receptor recycling GO:0019538 GO:0001922 GO:0007582 MGI D 1035336 B-1 B-cell homeostasis GO:0001923 GO:0009607 MGI D 1035336 B-1 B-cell differentiation GO:0009653 GO:0030154 GO:0001924 GO:0009607 MGI D 1035336 regulation of B-1 B-cell differentiation GO:0009653 GO:0030154 GO:0001925 GO:0009607 MGI D 1035336 negative regulation of B-1 B-cell differentiation GO:0009653 GO:0030154 GO:0001926 GO:0009607 MGI D 1035336 positive regulation of B-1 B-cell differentiation GO:0009653 GO:0030154 GO:0001927 GO:0006810 MGI D 1035336 exocyst assembly GO:0019538 GO:0001928 GO:0006810 MGI D 1035336 regulation of exocyst assembly GO:0019538 GO:0001929 GO:0006810 MGI D 1035336 negative regulation of exocyst assembly. GO:0019538 GO:0001930 GO:0006810 MGI D 1035336 positive regulation of exocyst assembly. GO:0019538 GO:0031047 GO:0006139 MAH D 1058993 RNA-mediated gene silencing GO:0031048 GO:0006259 MAH D 1058993 small RNA-mediated chromatin silencing GO:0006350 GO:0016043 GO:0040029 GO:0031049 GO:0006139 MAH D 1037129 programmed DNA elimination GO:0031050 GO:0006139 MAH D 1037129 dsRNA fragmentation GO:0031051 GO:0006139 MAH D 1037129 scnRNA production GO:0031052 GO:0006139 MAH D 1037129 chromosome breakage GO:0031053 GO:0006139 MAH D 1037129 primary microRNA processing GO:0040029 GO:0031054 GO:0006139 MAH D 1037129 pre-microRNA processing GO:0040029 GO:0031055 GO:0006259 MAH D 1060886 chromatin remodeling at centromere GO:0016043 GO:0031056 GO:0006259 MAH D 1060947 regulation of histone modification GO:0016043 GO:0031057 GO:0006259 MAH D 1060947 negative regulation of histone modification GO:0016043 GO:0031058 GO:0006259 MAH D 1060947 positive regulation of histone modification GO:0016043 GO:0031059 GO:0006259 MAH D 1060947 histone deacetylation at centromere GO:0006464 GO:0016043 GO:0031060 GO:0006259 MAH D 1060947 regulation of histone methylation GO:0006464 GO:0016043 GO:0031061 GO:0006259 MAH D 1060947 negative regulation of histone methylation GO:0006464 GO:0016043 GO:0031062 GO:0006259 MAH D 1060947 positive regulation of histone methylation GO:0006464 GO:0016043 GO:0031063 GO:0006259 MAH D 1060947 regulation of histone deacetylation GO:0006464 GO:0016043 GO:0031064 GO:0006259 MAH D 1060947 negative regulation of histone deacetylation GO:0006464 GO:0016043 GO:0031065 GO:0006259 MAH D 1060947 positive regulation of histone deacetylation GO:0006464 GO:0016043 GO:0031066 GO:0006259 MAH D 1060947 regulation of histone deacetylation at centromere GO:0006464 GO:0016043 GO:0031067 GO:0006259 MAH D 1060947 negative regulation of histone deacetylation at centromere GO:0006464 GO:0016043 GO:0031068 GO:0006259 MAH D 1060947 positive regulation of histone deacetylation at centromere GO:0006464 GO:0016043 GO:0031069 GO:0009653 MAH D 1066815 hair follicle morphogenesis GO:0031070 GO:0006139 MAH D 1062442 intronic snoRNA processing GO:0035270 GO:0009653 FB D 1055186 endocrine system development GO:0035271 GO:0009653 FB D 1055186 ring gland development GO:0035272 GO:0009653 FB D 1055186 exocrine system development GO:0035277 GO:0009653 FB D 1035336 spiracle morphogenesis GO:0035278 GO:0006139 FB D 1067512 miRNA-mediated gene silencing, negative regulation of translation GO:0006412 GO:0040029 GO:0035279 GO:0006139 FB D 1067512 miRNA-mediated gene silencing, mRNA cleavage GO:0040029 GO:0035280 GO:0006139 FB D 1067512 miRNA-mediated gene silencing, miRNA loading onto RISC GO:0040029 GO:0035281 GO:0006139 FB D 1067512 pre-microRNA nucleus export GO:0006810 GO:0040029 GO:0043241 GO:0019538 JL D 1049160 protein complex disassembly GO:0043242 GO:0019538 JL D 1049160 negative regulation of protein complex disassembly GO:0043243 GO:0019538 JL D 1049160 positive regulation of protein complex disassembly GO:0043244 GO:0019538 JL D 1049160 regulation of protein complex disassembly GO:0043247 GO:0006950 JL D 1058083 telomere maintenance in response to DNA damage GO:0009719 GO:0016043 GO:0043248 GO:0019538 JL D 1063414 proteasome assembly GO:0043249 GO:0009653 JL D 669024 erythrocyte maturation GO:0016043 GO:0030154 GO:0043251 GO:0006811 JL D 1067666 sodium-dependent organic anion transport GO:0043252 GO:0006811 JL D 1067666 sodium-independent organic anion transport GO:0043254 GO:0019538 JL D 1035336 regulation of protein complex assembly GO:0043255 GO:0005975 JL D 1035336 regulation of carbohydrate biosynthesis GO:0006091 GO:0009058 GO:0048511 GO:0007582 JIC D 1065207 rhythmic process GO:0048512 GO:0007582 JIC D 1065207 circadian behavior GO:0007610 GO:0048513 GO:0007275 JIC D 1065108 organ development GO:0048514 GO:0009653 JIC D 1065108 blood vessel morphogenesis GO:0051204 GO:0007005 AI D 1049299 protein insertion into mitochondrial membrane GO:0051205 GO:0016043 AI D 1049299 protein insertion into membrane GO:0051206 GO:0008152 AI D 1043020 silicate metabolism GO:0051207 GO:0006810 AI D 1043020 silicic acid transport GO:0051208 GO:0019725 AI D 1058148 sequestering of calcium ion GO:0051209 GO:0019725 AI D 1035336 release of sequestered calcium ion into cytoplasm GO:0051210 GO:0016049 AI D 1054446 isotropic cell growth GO:0051211 GO:0016049 AI D 1054446 anisotropic cell growth GO:0051214 GO:0006139 AI D 1044680 RNA virus induced gene silencing GO:0006950 GO:0009605 GO:0009607 GO:0040029 GO:0051215 GO:0006139 AI D 1044680 DNA virus induced gene silencing GO:0006950 GO:0009605 GO:0009607 GO:0040029 GO:0051216 GO:0009653 AI D 996494 cartilage development GO:0051217 GO:0006464 AI D 957985 molybdenum incorporation via L-aspartyl molybdenum bis(molybdopterin guanine dinucleotide) GO:0051218 GO:0006464 AI D 957985 tungsten incorporation via L-selenocysteinyl tungsten bis(molybdopterin guanine dinucleotide) GO:0051220 GO:0015031 AI D 957985 cytoplasmic sequestering of protein GO:0051221 GO:0006464 AI D 1035336 tungsten incorporation into metallo-sulfur cluster GO:0051222 GO:0015031 AI D 1035336 positive regulation of protein transport GO:0051223 GO:0015031 AI D 1035336 regulation of protein transport GO:0051224 GO:0015031 AI D 1035336 negative regulation of protein transport GO:0051225 GO:0007010 AI D 1035336 spindle assembly GO:0051226 GO:0007010 AI D 1035336 meiotic spindle assembly GO:0007049 GO:0051227 GO:0007010 AI D 1035336 mitotic spindle assembly GO:0007049 GO:0051228 GO:0007010 AI D 1035336 mitotic spindle disassembly GO:0007049 GO:0051229 GO:0007010 AI D 1035336 meiotic spindle disassembly GO:0007049 GO:0051230 GO:0007010 AI D 1035336 spindle disassembly GO:0051231 GO:0007010 AI D 1035336 spindle elongation GO:0051232 GO:0007010 AI D 1035336 meiotic spindle elongation GO:0007049 GO:0051234 GO:0007582 AI D 1035336 establishment of localization GO:0051235 GO:0007582 AI D 1035336 maintenance of localization GO:0051236 GO:0007582 AI D 1035336 establishment of RNA localization GO:0051237 GO:0007582 AI D 1035336 maintenance of RNA localization GO:0051238 GO:0007582 AI D 1035336 sequestering of metal ion GO:0051239 GO:0007582 AI D 1035336 regulation of organismal physiological process GO:0051240 GO:0007582 AI D 1035336 positive regulation of organismal physiological process GO:0051241 GO:0007582 AI D 1035336 negative regulation of organismal physiological process GO:0051242 GO:0007582 AI D 1035336 positive regulation of cellular physiological process GO:0051243 GO:0007582 AI D 1035336 negative regulation of cellular physiological process GO:0051244 GO:0007582 AI D 1035336 regulation of cellular physiological process GO:0051245 GO:0006950 AI D 1035336 negative regulation of cellular defense response GO:0009605 GO:0009607 GO:0051246 GO:0019538 AI D 1035336 regulation of protein metabolism GO:0051247 GO:0019538 AI D 1035336 positive regulation of protein metabolism GO:0051248 GO:0019538 AI D 1035336 negative regulation of protein metabolism GO:0051249 GO:0009607 AI D 1035336 regulation of lymphocyte activation GO:0051250 GO:0009607 AI D 1035336 negative regulation of lymphocyte activation GO:0051251 GO:0009607 AI D 1035336 positive regulation of lymphocyte activation GO:0051252 GO:0006139 AI D 1035336 regulation of RNA metabolism GO:0051253 GO:0006139 AI D 1035336 negative regulation of RNA metabolism GO:0051254 GO:0006139 AI D 1035336 positive regulation of RNA metabolism GO:0051255 GO:0007010 AI D 1035336 spindle midzone assembly GO:0051256 GO:0007010 AI D 1035336 mitotic spindle midzone assembly GO:0007049 GO:0051257 GO:0007010 AI D 1035336 meiotic spindle midzone assembly GO:0007049 GO:0051270 GO:0007582 AI D 1075150 regulation of cell motility GO:0051271 GO:0007582 AI D 1075150 negative regulation of cell motility GO:0051272 GO:0007582 AI D 1075150 positive regulation of cell motility GO:0051273 GO:0005975 AI D 1076031 beta-glucan metabolism GO:0051274 GO:0005975 AI D 1076031 beta-glucan biosynthesis GO:0009058 GO:0051275 GO:0005975 AI D 1076031 beta-glucan catabolism GO:0009056 New obsoletions in process ontology GO:0006462, protein complex assembly, multichaperone pathway: the string was ambiguous and the original meaning of the term was hence unknown. GO:0007122, loss of asymmetric budding: is a phenotype rather than a biological process. GO:0007123, bud scar accumulation: is a phenotype rather than a biological process. GO:0007150, growth pattern: the original meaning of the term is unclear, the current definition is incorrect, and it does not describe a biological process. GO:0010194, microRNA metabolism: implies further processing of an end product rather than its production. GO:0010195, microRNA biosynthesis: represents a process that is not known to occur. Term name changes in process ontology GO:0000212: meiotic spindle assembly --> meiotic spindle organization and biogenesis GO:0000728: gene conversion at MAT locus, DNA double-strand break formation --> gene conversion at mating-type locus, DNA double-strand break formation GO:0000734: gene conversion at MAT locus, DNA repair synthesis --> gene conversion at mating-type locus, DNA repair synthesis GO:0001507: acetylcholine breakdown in synaptic cleft --> acetylcholine catabolism in synaptic cleft GO:0001559: interpretation of nuclear:cytoplasmic ratio to regulate cell growth --> regulation of cell growth by detection of nuclear:cytoplasmic ratio GO:0001560: interpretation of external signals that regulate cell growth --> regulation of cell growth by extracellular stimulus GO:0001844: insertion of proteins into mitochondrial membranes during the induction of apoptosis --> protein insertion into mitochondrial membrane during induction of apoptosis GO:0006880: intracellular iron ion storage --> intracellular sequestering of iron ion GO:0006881: extracellular iron ion storage --> extracellular sequestering of iron ion GO:0006921: disassembly of cell structures --> disassembly of cell structures during apoptosis GO:0007051: spindle assembly --> spindle organization and biogenesis GO:0007052: mitotic spindle assembly --> mitotic spindle organization and biogenesis GO:0007114: budding --> cell budding GO:0007116: regulation of budding --> regulation of cell budding GO:0007117: bud growth --> budding cell bud growth GO:0007118: apical bud growth --> budding cell apical bud growth GO:0007119: isotropic bud growth --> budding cell isotropic bud growth GO:0007120: axial budding --> axial bud site selection GO:0007121: polar budding --> bipolar bud site selection GO:0007300: nurse cell to ocyte transport (sensu Insecta) --> nurse cell to oocyte transport (sensu Insecta) GO:0007531: mating-type determination --> mating type determination GO:0007533: mating-type switching and recombination --> mating type switching and recombination GO:0007534: gene conversion at MAT locus --> gene conversion at mating-type locus GO:0008016: regulation of heart rate --> regulation of heart contraction rate GO:0008298: mRNA localization, intracellular --> intracellular mRNA localization GO:0008377: light-induced release of calcium, from internal store --> light-induced release of internally sequestered calcium ion (Ca2+) GO:0009290: cellular DNA uptake --> cellular DNA import GO:0016475: interpretation of nuclear:cytoplasmic ratio --> detection of nuclear:cytoplasmic ratio GO:0018147: molybdenum incorporation via L-selenocysteinyl molybdopterin guanine dinucleotide --> molybdenum incorporation via L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide) GO:0018315: molybdenum incorporation into molybdenum-sulfur cluster --> molybdenum incorporation into molybdenum-molybdopterin complex GO:0018945: organosilicone metabolism --> organosilicon metabolism GO:0018946: aerobic organosilicone metabolism --> aerobic organosilicon metabolism GO:0018947: anaerobic organosilicone metabolism --> anaerobic organosilicon metabolism GO:0030422: RNA interference, production of guide RNAs --> RNA interference, production of siRNA GO:0030466: chromatin silencing at silent mating-type cassette (sensu Fungi) --> chromatin silencing at silent mating-type cassette GO:0030472: mitotic spindle assembly (sensu Fungi) --> mitotic spindle organization and biogenesis in nucleus GO:0030473: nuclear migration along microtubule --> nuclear migration, microtubule-mediated GO:0030730: triacylglycerol storage --> sequestering of triacylglycerol GO:0030994: primary septum hydrolysis --> primary cell septum hydrolysis GO:0030995: septum edging hydrolysis --> cell septum edging hydrolysis GO:0035194: RNA-mediated gene silencing --> RNA-mediated posttranscriptional gene silencing GO:0042040: metal incorporation into metallo-pterin complex --> metal incorporation into metallo-molybdopterin complex GO:0042042: tungsten incorporation into metallo-pterin complex --> tungsten incorporation into tungsten-molybdopterin complex GO:0042137: neurotransmitter storage --> sequestering of neurotransmitter GO:0045038: chloroplast thylakoid protein import --> chloroplast thylakoid membrane protein import GO:0045048: protein-ER insertion --> protein insertion into ER membrane GO:0045049: ER insertion by N-terminal cleaved signal sequence --> protein insertion into ER membrane by N-terminal cleaved signal sequence GO:0045050: ER insertion by stop-transfer membrane-anchor sequence --> protein insertion into ER membrane by stop-transfer membrane-anchor sequence GO:0045051: ER insertion by internal uncleaved signal-anchor sequence --> protein insertion into ER membrane by internal uncleaved signal-anchor sequence GO:0045052: ER insertion by GPI attachment sequence --> protein insertion into ER membrane by GPI attachment sequence GO:0045066: suppressor T-cell differentiation --> regulatory T-cell differentiation GO:0045589: regulation of suppressor T-cell differentiation --> regulation of regulatory T-cell differentiation GO:0045590: negative regulation of suppressor T-cell differentiation --> negative regulation of regulatory T-cell differentiation GO:0045591: positive regulation of suppressor T-cell differentiation --> positive regulation of regulatory T-cell differentiation GO:0045682: regulation of epidermal differentiation --> regulation of epidermis development GO:0045683: negative regulation of epidermal differentiation --> negative regulation of epidermis development GO:0045684: positive regulation of epidermal differentiation --> positive regulation of epidermis development GO:0045781: negative regulation of budding --> negative regulation of cell budding GO:0045782: positive regulation of budding --> positive regulation of cell budding GO:0045822: negative regulation of heart rate --> negative regulation of heart contraction rate GO:0045823: positive regulation of heart rate --> positive regulation of heart contraction rate GO:0046455: organosilicone catabolism --> organosilicon catabolism GO:0050788: sequestering of mercury ion --> sequestering of mercury New definitions for process ontology terms (32 new definitions) GO:0000051, urea cycle intermediate metabolism GO:0001507, acetylcholine catabolism in synaptic cleft GO:0006462, protein complex assembly, multichaperone pathway GO:0006880, intracellular sequestering of iron ion GO:0006881, extracellular sequestering of iron ion GO:0007117, budding cell bud growth GO:0007120, axial bud site selection GO:0007121, bipolar bud site selection GO:0007122, loss of asymmetric budding GO:0007123, bud scar accumulation GO:0007272, ionic insulation of neurons by glial cells GO:0007299, follicle cell adhesion (sensu Insecta) GO:0007411, axon guidance GO:0007412, axon target recognition GO:0008045, motor axon guidance GO:0008377, light-induced release of internally sequestered calcium ion (Ca2+) GO:0009290, cellular DNA import GO:0009561, megagametophyte nuclear division GO:0009562, megagametophyte nuclear migration GO:0015013, heparan sulfate proteoglycan biosynthesis, linkage to polypeptide GO:0015015, heparan sulfate proteoglycan biosynthesis, enzymatic modification GO:0016973, poly(A)+ mRNA-nucleus export GO:0017004, cytochrome biogenesis GO:0017062, cytochrome bc(1) complex biogenesis GO:0017126, nucleologenesis GO:0019090, mitochondrial rRNA, mitochondrial export GO:0019091, mitochondrial lrRNA, mitochondrial export GO:0019092, mitochondrial srRNA, mitochondrial export GO:0019093, mitochondrial RNA localization GO:0019615, catechol catabolism, ortho-cleavage GO:0019616, catechol catabolism, meta-cleavage GO:0042137, sequestering of neurotransmitter New term merges in process ontology GO:0030605 has been merged into GO:0040001, mitotic spindle positioning or orientation GO:0030606 has been merged into GO:0018986, mitotic spindle positioning GO:0030607 has been merged into GO:0000132, mitotic spindle orientation GO:0030608 has been merged into GO:0018986, mitotic spindle positioning GO:0030609 has been merged into GO:0000132, mitotic spindle orientation GO:0030610 has been merged into GO:0040001, mitotic spindle positioning or orientation GO:0030918 has been merged into GO:0035196, miRNA-mediated gene silencing, production of miRNAs GO:0042041 has been merged into GO:0018315, molybdenum incorporation into molybdenum-molybdopterin complex GO:0048114 has been merged into GO:0030719, polar granule organization and biogenesis GO:0048115 has been merged into GO:0007318, pole plasm protein localization GO:0048116 has been merged into GO:0007316, pole plasm RNA localization GO:0048117 has been merged into GO:0019095, pole plasm mitochondrial rRNA localization GO:0048118 has been merged into GO:0019096, pole plasm mitochondrial lrRNA localization GO:0048119 has been merged into GO:0019097, pole plasm mitochondrial srRNA localization GO:0048120 has been merged into GO:0019094, pole plasm mRNA localization GO:0048121 has been merged into GO:0046595, establishment of pole plasm mRNA localization GO:0048122 has been merged into GO:0046594, maintenance of pole plasm mRNA localization GO:0050895 has been merged into GO:0007623, circadian rhythm Term movements in process ontology: Terms movements under GO Slim term 'reproduction ; GO:0000003' + GO:0000744, karyogamy during conjugation without cellular fusion + GO:0000745, nuclear exchange during conjugation without cellular fusion Terms movements under GO Slim term 'carbohydrate metabolism ; GO:0005975' + GO:0006110, regulation of glycolysis + GO:0045820, negative regulation of glycolysis + GO:0045821, positive regulation of glycolysis Terms movements under GO Slim term 'energy pathways ; GO:0006091' + GO:0006110, regulation of glycolysis + GO:0010110, regulation of photosynthesis, dark reaction + GO:0045820, negative regulation of glycolysis + GO:0045821, positive regulation of glycolysis Terms movements under GO Slim term 'amino acid and derivative metabolism ; GO:0006519' + GO:0001507, acetylcholine catabolism in synaptic cleft Terms movements under GO Slim term 'transport ; GO:0006810' + GO:0001504, neurotransmitter uptake + GO:0006835, dicarboxylic acid transport + GO:0006842, tricarboxylic acid transport + GO:0006843, mitochondrial citrate transport + GO:0006846, acetate transport + GO:0006847, plasma membrane acetate transport + GO:0006848, pyruvate transport + GO:0006849, plasma membrane pyruvate transport + GO:0006850, mitochondrial pyruvate transport + GO:0009935, nutrient uptake + GO:0015712, hexose phosphate transport + GO:0015717, triose phosphate transport + GO:0015718, monocarboxylic acid transport + GO:0015719, allantoate transport + GO:0015721, bile acid transport + GO:0015722, canalicular bile acid transport + GO:0015723, bilirubin transport + GO:0015724, formate transport + GO:0015725, gluconate transport + GO:0015726, L-idonate transport + GO:0015727, lactate transport + GO:0015728, mevalonate transport + GO:0015729, oxaloacetate transport + GO:0015730, propionate transport + GO:0015731, 3-hydroxyphenyl propanoate transport + GO:0015732, prostaglandin transport + GO:0015733, shikimate transport + GO:0015734, taurine transport + GO:0015735, uronic acid transport + GO:0015736, hexuronate transport + GO:0015737, galacturonate transport + GO:0015738, glucuronate transport + GO:0015739, sialic acid transport + GO:0015740, C4-dicarboxylate transport + GO:0015741, fumarate transport + GO:0015742, alpha-ketoglutarate transport + GO:0015743, malate transport + GO:0015744, succinate transport + GO:0015745, tartrate transport + GO:0015746, citrate transport + GO:0015747, urate transport + GO:0019090, mitochondrial rRNA, mitochondrial export + GO:0019091, mitochondrial lrRNA, mitochondrial export + GO:0019092, mitochondrial srRNA, mitochondrial export + GO:0019532, oxalate transport + GO:0042889, 3-phenylpropionic acid transport - GO:0043004, cytoplasmic sequestering of CFTR protein - GO:0043181, vacuolar sequestering Terms movements under GO Slim term 'ion transport ; GO:0006811' - GO:0006835, dicarboxylic acid transport - GO:0006842, tricarboxylic acid transport - GO:0006843, mitochondrial citrate transport - GO:0006846, acetate transport - GO:0006847, plasma membrane acetate transport - GO:0006848, pyruvate transport - GO:0006849, plasma membrane pyruvate transport - GO:0006850, mitochondrial pyruvate transport - GO:0015712, hexose phosphate transport - GO:0015717, triose phosphate transport - GO:0015718, monocarboxylic acid transport - GO:0015719, allantoate transport - GO:0015721, bile acid transport - GO:0015722, canalicular bile acid transport - GO:0015723, bilirubin transport - GO:0015724, formate transport - GO:0015725, gluconate transport - GO:0015726, L-idonate transport - GO:0015727, lactate transport - GO:0015728, mevalonate transport - GO:0015729, oxaloacetate transport - GO:0015730, propionate transport - GO:0015731, 3-hydroxyphenyl propanoate transport - GO:0015732, prostaglandin transport - GO:0015733, shikimate transport - GO:0015734, taurine transport - GO:0015735, uronic acid transport - GO:0015736, hexuronate transport - GO:0015737, galacturonate transport - GO:0015738, glucuronate transport - GO:0015739, sialic acid transport - GO:0015740, C4-dicarboxylate transport - GO:0015741, fumarate transport - GO:0015742, alpha-ketoglutarate transport - GO:0015743, malate transport - GO:0015744, succinate transport - GO:0015745, tartrate transport - GO:0015746, citrate transport - GO:0015747, urate transport - GO:0019532, oxalate transport - GO:0042889, 3-phenylpropionic acid transport - GO:0043182, vacuolar sequestering of sodium ion Terms movements under GO Slim term 'response to stress ; GO:0006950' + GO:0000706, meiotic DNA double-strand break processing + GO:0000708, meiotic strand invasion + GO:0000710, meiotic mismatch repair + GO:0000713, meiotic heteroduplex formation + GO:0000714, meiotic strand displacement - GO:0000722, telomerase-independent telomere maintenance - GO:0000723, telomere maintenance + GO:0001788, antibody-dependent cellular cytotoxicity + GO:0001813, regulation of antibody-dependent cellular cytotoxicity + GO:0001814, negative regulation of antibody-dependent cellular cytotoxicity + GO:0001815, positive regulation of antibody-dependent cellular cytotoxicity - GO:0007004, telomerase-dependent telomere maintenance - GO:0016233, telomere capping - GO:0048239, negative regulation of telomeric recombination at telomere Terms movements under GO Slim term 'organelle organization and biogenesis ; GO:0006996' + GO:0000027, ribosomal large subunit assembly and maintenance + GO:0000028, ribosomal small subunit assembly and maintenance + GO:0000046, autophagic vacuole fusion + GO:0000054, ribosome-nucleus export + GO:0000055, ribosomal large subunit-nucleus export + GO:0000056, ribosomal small subunit-nucleus export - GO:0001765, lipid raft formation - GO:0001766, lipid raft polarization - GO:0001778, plasma membrane repair + GO:0006364, rRNA processing + GO:0006365, 35S primary transcript processing - GO:0007009, plasma membrane organization and biogenesis + GO:0007046, ribosome biogenesis - GO:0009663, plasmodesma organization and biogenesis - GO:0017121, phospholipid scrambling + GO:0030489, processing of 27S pre-rRNA + GO:0030490, processing of 20S pre-rRNA + GO:0042254, ribosome biogenesis and assembly + GO:0042255, ribosome assembly + GO:0042256, mature ribosome assembly + GO:0042257, ribosomal subunit assembly + GO:0042273, ribosomal large subunit biogenesis + GO:0042274, ribosomal small subunit biogenesis - GO:0043181, vacuolar sequestering - GO:0043182, vacuolar sequestering of sodium ion + GO:0045048, protein insertion into ER membrane + GO:0045049, protein insertion into ER membrane by N-terminal cleaved signal sequence + GO:0045050, protein insertion into ER membrane by stop-transfer membrane-anchor sequence + GO:0045051, protein insertion into ER membrane by internal uncleaved signal-anchor sequence + GO:0045052, protein insertion into ER membrane by GPI attachment sequence - GO:0045112, integrin biosynthesis - GO:0045113, regulation of integrin biosynthesis - GO:0045114, beta 2 integrin biosynthesis - GO:0045115, regulation of beta 2 integrin biosynthesis - GO:0045332, phospholipid translocation - GO:0045720, negative regulation of integrin biosynthesis - GO:0045726, positive regulation of integrin biosynthesis - GO:0045774, negative regulation of beta 2 integrin biosynthesis - GO:0045775, positive regulation of beta 2 integrin biosynthesis Terms movements under GO Slim term 'mitochondrion organization and biogenesis ; GO:0007005' + GO:0001844, protein insertion into mitochondrial membrane during induction of apoptosis Terms movements under GO Slim term 'cytoskeleton organization and biogenesis ; GO:0007010' + GO:0007120, axial bud site selection + GO:0007121, bipolar bud site selection Terms movements under GO Slim term 'cytoplasm organization and biogenesis ; GO:0007028' - GO:0006996, organelle organization and biogenesis + GO:0009663, plasmodesma organization and biogenesis Terms movements under GO Slim term 'cell cycle ; GO:0007049' - GO:0007051, spindle organization and biogenesis + GO:0009561, megagametophyte nuclear division - GO:0030953, astral microtubule organization and biogenesis - GO:0030954, astral microtubule nucleation - GO:0043146, spindle stabilization Terms movements under GO Slim term 'cell communication ; GO:0007154' + GO:0007299, follicle cell adhesion (sensu Insecta) Terms movements under GO Slim term 'signal transduction ; GO:0007165' + GO:0042552, myelination Terms movements under GO Slim term 'cell-cell signaling ; GO:0007267' + GO:0042552, myelination Terms movements under GO Slim term 'development ; GO:0007275' + GO:0000706, meiotic DNA double-strand break processing + GO:0000708, meiotic strand invasion + GO:0000713, meiotic heteroduplex formation + GO:0001308, loss of chromatin silencing during replicative cell aging + GO:0001568, blood vessel development - GO:0040029, regulation of gene expression, epigenetic - GO:0048444, floral organ morphogenesis - GO:0048449, floral organ formation - GO:0048450, floral organ structural organization Terms movements under GO Slim term 'physiological process ; GO:0007582' - GO:0000046, autophagic vacuole fusion - GO:0001504, neurotransmitter uptake - GO:0001507, acetylcholine catabolism in synaptic cleft + GO:0006621, protein-ER retention + GO:0007622, rhythmic behavior + GO:0007623, circadian rhythm + GO:0007624, ultradian rhythm + GO:0008062, eclosion rhythm + GO:0009649, entrainment of circadian clock - GO:0009935, nutrient uptake - GO:0019090, mitochondrial rRNA, mitochondrial export - GO:0019091, mitochondrial lrRNA, mitochondrial export - GO:0019092, mitochondrial srRNA, mitochondrial export + GO:0042552, myelination + GO:0042752, regulation of circadian rhythm + GO:0042753, positive regulation of circadian rhythm + GO:0042754, negative regulation of circadian rhythm + GO:0043181, vacuolar sequestering + GO:0045053, protein-Golgi retention + GO:0045475, locomotor rhythm Terms movements under GO Slim term 'behavior ; GO:0007610' - GO:0007623, circadian rhythm - GO:0007624, ultradian rhythm - GO:0009649, entrainment of circadian clock - GO:0042752, regulation of circadian rhythm - GO:0042753, positive regulation of circadian rhythm - GO:0042754, negative regulation of circadian rhythm - GO:0043153, entrainment of circadian clock by photoperiod Terms movements under GO Slim term 'biological_process ; GO:0008150' + GO:0040029, regulation of gene expression, epigenetic Terms movements under GO Slim term 'cell growth and/or maintenance ; GO:0008151' - GO:0007120, axial bud site selection - GO:0007121, bipolar bud site selection Terms movements under GO Slim term 'metabolism ; GO:0008152' - GO:0006085, acetyl-CoA biosynthesis - GO:0006086, acetyl-CoA biosynthesis from pyruvate - GO:0006779, porphyrin biosynthesis - GO:0006780, uroporphyrinogen III biosynthesis - GO:0006781, succinyl-CoA pathway - GO:0006787, porphyrin catabolism - GO:0006788, heme oxidation - GO:0006789, bilirubin conjugation - GO:0008064, regulation of actin polymerization and/or depolymerization - GO:0008154, actin polymerization and/or depolymerization - GO:0010024, phytochromobilin biosynthesis - GO:0010125, mycothiol biosynthesis - GO:0019290, siderochrome biosynthesis - GO:0019427, acetyl-CoA biosynthesis from acetate - GO:0019431, acetyl-CoA biosynthesis from ethanol - GO:0019539, siderochrome biosynthesis from hydroxamic acid - GO:0019687, pyruvate biosynthesis from acetate - GO:0030044, actin filament stabilization - GO:0030045, actin filament destabilization - GO:0030634, carbon fixation by acetyl-CoA pathway - GO:0042744, hydrogen peroxide catabolism - GO:0042858, chrysobactin biosynthesis - GO:0042859, chrysobactin catabolism - GO:0042861, achromobactin biosynthesis - GO:0042862, achromobactin catabolism - GO:0042864, pyochelin biosynthesis - GO:0042865, pyochelin catabolism - GO:0045105, intermediate filament polymerization and/or depolymerization - GO:0045108, regulation of intermediate filament polymerization and/or depolymerization - GO:0046140, corrin biosynthesis - GO:0046141, corrin catabolism - GO:0046214, enterobactin catabolism - GO:0046215, siderochrome catabolism - GO:0046356, acetyl-CoA catabolism - GO:0050665, hydrogen peroxide biosynthesis - GO:0050899, nitrile catabolism - GO:0051016, barbed-end actin filament capping - GO:0051144, propanediol catabolism Terms movements under GO Slim term 'cell proliferation ; GO:0008283' + GO:0007120, axial bud site selection + GO:0007121, bipolar bud site selection Terms movements under GO Slim term 'catabolism ; GO:0009056' + GO:0000706, meiotic DNA double-strand break processing + GO:0001507, acetylcholine catabolism in synaptic cleft + GO:0006787, porphyrin catabolism + GO:0006788, heme oxidation + GO:0006789, bilirubin conjugation + GO:0042744, hydrogen peroxide catabolism + GO:0042859, chrysobactin catabolism + GO:0042862, achromobactin catabolism + GO:0042865, pyochelin catabolism + GO:0046141, corrin catabolism + GO:0046214, enterobactin catabolism + GO:0046215, siderochrome catabolism + GO:0046356, acetyl-CoA catabolism + GO:0050899, nitrile catabolism + GO:0051144, propanediol catabolism Terms movements under GO Slim term 'biosynthesis ; GO:0009058' + GO:0006085, acetyl-CoA biosynthesis + GO:0006086, acetyl-CoA biosynthesis from pyruvate + GO:0006779, porphyrin biosynthesis + GO:0006780, uroporphyrinogen III biosynthesis + GO:0006781, succinyl-CoA pathway + GO:0010024, phytochromobilin biosynthesis + GO:0010125, mycothiol biosynthesis + GO:0019290, siderochrome biosynthesis + GO:0019427, acetyl-CoA biosynthesis from acetate + GO:0019431, acetyl-CoA biosynthesis from ethanol + GO:0019539, siderochrome biosynthesis from hydroxamic acid + GO:0019687, pyruvate biosynthesis from acetate + GO:0030634, carbon fixation by acetyl-CoA pathway - GO:0035196, miRNA-mediated gene silencing, production of miRNAs + GO:0042858, chrysobactin biosynthesis + GO:0042861, achromobactin biosynthesis + GO:0042864, pyochelin biosynthesis + GO:0046140, corrin biosynthesis + GO:0050665, hydrogen peroxide biosynthesis + GO:0051070, galactomannan biosynthesis Terms movements under GO Slim term 'response to external stimulus ; GO:0009605' + GO:0001788, antibody-dependent cellular cytotoxicity + GO:0001813, regulation of antibody-dependent cellular cytotoxicity + GO:0001814, negative regulation of antibody-dependent cellular cytotoxicity + GO:0001815, positive regulation of antibody-dependent cellular cytotoxicity Terms movements under GO Slim term 'response to biotic stimulus ; GO:0009607' + GO:0001788, antibody-dependent cellular cytotoxicity + GO:0001813, regulation of antibody-dependent cellular cytotoxicity + GO:0001814, negative regulation of antibody-dependent cellular cytotoxicity + GO:0001815, positive regulation of antibody-dependent cellular cytotoxicity Terms movements under GO Slim term 'morphogenesis ; GO:0009653' - GO:0001402, signal transduction during filamentous growth - GO:0001403, invasive growth (sensu Saccharomyces) - GO:0001568, blood vessel development + GO:0007120, axial bud site selection + GO:0007121, bipolar bud site selection - GO:0007124, pseudohyphal growth + GO:0007272, ionic insulation of neurons by glial cells - GO:0030447, filamentous growth - GO:0030448, hyphal growth - GO:0045311, filamentous growth in response to pheromones + GO:0048444, floral organ morphogenesis + GO:0048449, floral organ formation + GO:0048450, floral organ structural organization Terms movements under GO Slim term 'response to endogenous stimulus ; GO:0009719' + GO:0000706, meiotic DNA double-strand break processing + GO:0000708, meiotic strand invasion + GO:0000710, meiotic mismatch repair + GO:0000713, meiotic heteroduplex formation + GO:0000714, meiotic strand displacement - GO:0000722, telomerase-independent telomere maintenance - GO:0000723, telomere maintenance + GO:0001559, regulation of cell growth by detection of nuclear:cytoplasmic ratio - GO:0007004, telomerase-dependent telomere maintenance - GO:0016233, telomere capping + GO:0016475, detection of nuclear:cytoplasmic ratio - GO:0048239, negative regulation of telomeric recombination at telomere Terms movements under GO Slim term 'protein transport ; GO:0015031' - GO:0006621, protein-ER retention + GO:0043004, cytoplasmic sequestering of CFTR protein - GO:0045048, protein insertion into ER membrane - GO:0045049, protein insertion into ER membrane by N-terminal cleaved signal sequence - GO:0045050, protein insertion into ER membrane by stop-transfer membrane-anchor sequence - GO:0045051, protein insertion into ER membrane by internal uncleaved signal-anchor sequence - GO:0045052, protein insertion into ER membrane by GPI attachment sequence - GO:0045053, protein-Golgi retention Terms movements under GO Slim term 'cell organization and biogenesis ; GO:0016043' - GO:0001402, signal transduction during filamentous growth - GO:0001403, invasive growth (sensu Saccharomyces) + GO:0001765, lipid raft formation + GO:0001766, lipid raft polarization + GO:0001778, plasma membrane repair + GO:0006996, organelle organization and biogenesis + GO:0007009, plasma membrane organization and biogenesis - GO:0007124, pseudohyphal growth + GO:0009562, megagametophyte nuclear migration + GO:0017121, phospholipid scrambling - GO:0030447, filamentous growth - GO:0030448, hyphal growth + GO:0045112, integrin biosynthesis + GO:0045113, regulation of integrin biosynthesis + GO:0045114, beta 2 integrin biosynthesis + GO:0045115, regulation of beta 2 integrin biosynthesis - GO:0045311, filamentous growth in response to pheromones + GO:0045332, phospholipid translocation + GO:0045720, negative regulation of integrin biosynthesis + GO:0045726, positive regulation of integrin biosynthesis + GO:0045774, negative regulation of beta 2 integrin biosynthesis + GO:0045775, positive regulation of beta 2 integrin biosynthesis Terms movements under GO Slim term 'protein metabolism ; GO:0019538' + GO:0000027, ribosomal large subunit assembly and maintenance + GO:0000028, ribosomal small subunit assembly and maintenance + GO:0008064, regulation of actin polymerization and/or depolymerization + GO:0008154, actin polymerization and/or depolymerization - GO:0020028, hemoglobin import + GO:0030044, actin filament stabilization + GO:0030045, actin filament destabilization + GO:0042255, ribosome assembly + GO:0042256, mature ribosome assembly + GO:0042257, ribosomal subunit assembly + GO:0045105, intermediate filament polymerization and/or depolymerization + GO:0045108, regulation of intermediate filament polymerization and/or depolymerization + GO:0051016, barbed-end actin filament capping Terms movements under GO Slim term 'cell homeostasis ; GO:0019725' + GO:0008377, light-induced release of internally sequestered calcium ion (Ca2+) Terms movements under GO Slim term 'cell differentiation ; GO:0030154' + GO:0007272, ionic insulation of neurons by glial cells Terms movements under GO Slim term 'growth ; GO:0040007' + GO:0008582, regulation of synaptic growth at neuromuscular junction + GO:0042062, long-term strengthening of neuromuscular junction + GO:0042065, glial growth + GO:0042066, perineurial glial growth + GO:0045886, negative regulation of synaptic growth at neuromuscular junction + GO:0045887, positive regulation of synaptic growth at neuromuscular junction + GO:0051124, synaptic growth at neuromuscular junction SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any 1000127 Fixed JNKs/MAPKs [none] 1000168 Fixed missing relationships - obol [none] 1004045 Rejected ionotropic/metabotropic glutamate receptors GO:0035235 1004592 Fixed query about transcription elongation FACT complex [none] 1012991 Duplicate plasminogen activation [none] 1024313 Accepted ntr: spindle midzone GO:0051233 GO:0051255-51257 1024533 None exocyst assembly GO:0001927-01930 1024565 Accepted calcium mobilization GO:0051208-51209 1031928 Later plastid envelope [none] 1036214 Fixed sensu Insecta pole plasm localization terms [none] 1037129 Accepted Many RNAi-related term/structure changes; new ciliate terms GO:0031047-31054 1041433 Fixed Growth pattern or patterned growth [none] 1043020 Works For Me New species metabolism terms GO:0051206-51207 1044680 Accepted DNA VIGS/RNA VIGS term addition GO:0051214-51215 1046944 Accepted Fanconi anaemia complex IntAct ID EBI-396822 GO:0043240 1049160 Accepted Complex formation/degradation GO:0043241-43244 1049299 Fixed Membrane insertion proteins GO:0051204-51205 1052915 Fixed GO:0042555: MCM Complex, parentage suggestion [none] 1053708 Fixed Merge GO:0016745 into GO:0016744 [none] 1054446 Fixed isotropic growth GO:0051210-51211 1055186 Accepted endocrine system development: new term request GO:0035270-35272 1055411 Works For Me ntr : polarized growth ? [none] 1055922 Accepted budding node [none] 1058083 Fixed inc parent telomere maintenance GO:0043247 1058148 Fixed Obsoletion: 'calcium ion storage activity' + comments GO:0051208 1058152 Fixed query nuclear migration along microtubules [none] 1058157 Fixed dynactin complexGO:0005869 [none] 1058743 Fixed juxtamembrane [none] 1058774 Accepted megasome GO:0043246 1058794 Accepted laminin binding terms GO:0043236-43239 1058929 Accepted septum surface; GO:0043187 [none] 1058993 Fixed queries RNA-mediated gene silencing GO:0031047-31048 1059582 Fixed New obol missing relationships [none] 1059599 Fixed unneeded sensu Fungi terms [none] 1060114 Fixed 'interpretation' terms for renaming (GO:0016475, GO:00015xx) [none] 1060182 Fixed monooxygenases and dioxygenases GO:0050381 GO:0051213 1060207 Accepted Vanadium ion binding GO:0051212 1060225 Fixed children of chloride peroxidase ; GO:0016691 [none] 1060886 Accepted NTR: chromatin remodeling at centromere GO:0031055 1060947 Accepted new children of histon modification various GO:0031056-31068 1061167 Accepted phosphoprotein binding GO:0051219 1062410 Invalid regulation of CDC42 GTPase and children [none] 1062442 Accepted ntr : intronic snoRNA processing GO:0031070 1063414 Accepted Proteasome maturation- new term in Process GO:0043248 1063729 Fixed ntr: replication licencing [none] 1063964 Accepted ethanol binding AND phthalate binding new terms GO:0035273-35276 1064419 Rejected missing parent phosphoserine phosphatase activity [none] 1064460 Fixed telomere maintenence/centromere maintenance [none] 1064813 Rejected merge GO:50519 and GO:8897 [none] 1065108 Accepted blood vessel development GO:0048513-48514 1065207 Accepted rhythmic behavior GO:0048511-48512 1066815 Accepted hair follicle morphogenesis GO:0031069 1067512 Accepted miRNA gene silencing- some new terms and some tweaks GO:0035278-35281 1067666 Accepted Sodium-dependent organic anion transporter activity (related GO:0043250-43252 1068713 Accepted Chloroplast ribosome GO:0043253 1068964 Fixed inflammatory response parentage [none] 1069327 None Fluorescence and luminescence [none] 1070505 Accepted regulatory T cell differentiation [none] 1071028 Fixed Transport activity: new is-a links suggested by GONG [none] 1071753 Fixed quick budding [none] 1072349 Accepted ectoplasm GO:0043265 1072366 Accepted cellulosome GO:0043263 1072566 Fixed microtubules: TPV? [none] 1073767 Fixed query MAT locus [none] 1075148 Accepted query: alpha-keto amide reductase GO:0051268-51269 1075150 Accepted ntr: regulation of cell motility GO:0051270-51272 1075895 Works For Me query geranylgeranyltransferase activity [none] 1076065 Fixed Transport activity 2: new is-a links suggested by GONG [none] 669024 Accepted heterocyst formation/maturation GO:0043158 GO:0043249 820517 Fixed Cdc73/Paf1 complex incorrect parentage? [none] 895787 Fixed viral parasite terms relationship to host [none] 900600 Fixed cell killing [none] 957760 Out of Date SO vs. GO [none] 957985 Accepted cytoplasmic sequestering of a protein GO:0051217-51220 960167 Out of Date Terms with missing is_a parents [none] 972645 Fixed extracellular space GO:0043245 990247 Accepted organ morphogenesis terms [none] 996494 Accepted Cartilage matrix metabolism GO:0051216 Statistics: component: 1501 terms, 92.0% defined (1381 terms defined) function: 7443 terms, 89.6% defined (6671 terms defined) process: 9154 terms, 95.9% defined (8777 terms defined) Total: 18098 terms, 93.0% defined (16829 terms defined) Term errors GO:0004497, monooxygenase activity - secondary ID GO:0050381 lost