GO Monthly Release Notes for August 2001 ======================== Generated on Mon Oct 27 12:26:53 2003 Files used: component old: 2.43 new: 2.52 function old: 2.71 new: 2.86 process old: 2.58 new: 2.74 definitions old: 2.67 new: 2.85 GO Slim: Generic.0208 Key: |----1----||----2-----||-3--||4||----5----||-----------6-----------| GO:0009941 GO:0009536 TAIR D SF:575119 chloroplast envelope (obs) 1. GO ID number 2. GO-slim term(s) that new term was added under or "obs" if the term is obsolete. Terms with more than one GO-slim parent have further parents listed underneath the first parent. 3. Database that added term 4. indicates the existence of a definition for the term 5. the sourceforge request ID the term was added in response to 6. term name Columns are tab-delimited and can be imported into Excel for ease of reading. New terms in component ontology (55 new terms) GO:0030074 GO:0005886 MAH D thylakoid (sensu Proteobacteria) GO:0009579 GO:0030075 GO:0005886 MAH D thylakoid (sensu Cyanobacteria) GO:0009579 GO:0030076 GO:0009579 MAH D light-harvesting complex GO:0030077 GO:0009579 MAH D light-harvesting complex (sensu Proteobacteria) GO:0030078 GO:0005886 MAH D light-harvesting complex, core complex GO:0009579 GO:0030079 GO:0005886 MAH D light-harvesting complex, peripheral complex GO:0009579 GO:0030080 GO:0005886 MAH D B875 antenna complex GO:0009579 GO:0030081 GO:0005886 MAH D B800-820 antenna complex GO:0009579 GO:0030082 GO:0005886 MAH D B800-850 antenna complex GO:0009579 GO:0030083 GO:0009536 MAH D PSI associated light-harvesting complex I, LHCIa subcomplex GO:0009579 GO:0030084 GO:0009536 MAH D PSI associated light-harvesting complex I, LHCIb subcomplex GO:0009579 GO:0030085 GO:0009536 MAH D PSII associated light-harvesting complex II, peripheral complex, LHCIIb subcomplex GO:0009579 GO:0030086 GO:0009536 MAH D PSII associated light-harvesting complex II, core complex, LHCIIa subcomplex GO:0009579 GO:0030087 GO:0009536 MAH D PSII associated light-harvesting complex II, core complex, LHCIIc subcomplex GO:0009579 GO:0030088 GO:0009536 MAH D PSII associated light-harvesting complex II, core complex, LHCIId subcomplex GO:0009579 GO:0030089 GO:0005886 MAH D phycobilisome GO:0009579 GO:0030090 GO:0005886 MAH D reaction center (sensu Proteobacteria) GO:0009579 GO:0030093 GO:0009536 MAH D photosystem I (sensu Viridiplantae) GO:0009579 GO:0030094 GO:0005886 MAH D photosystem I (sensu Cyanobacteria) GO:0009579 GO:0030095 GO:0009536 MAH D photosystem II (sensu Viridiplantae) GO:0009579 GO:0030096 GO:0005886 MAH D photosystem II (sensu Cyanobacteria) GO:0009579 GO:0030112 GO:0005576 MAH D glycocalyx GO:0005618 GO:0030113 GO:0005576 MAH D capsule GO:0005618 GO:0030114 GO:0005576 MAH D slime layer of glycocalyx GO:0005618 GO:0030115 GO:0005576 MAH D S-layer of glycocalyx GO:0005618 GO:0030117 GO:0005737 MAH D membrane coat GO:0030118 GO:0005737 MAH D clathrin coat GO:0030119 GO:0005737 MAH D membrane coat adaptor complex GO:0030120 GO:0005737 MAH D vesicle coat GO:0016023 GO:0030121 GO:0005737 MAH D AP-1 adaptor complex GO:0005794 GO:0016023 GO:0030122 GO:0005737 MAH D AP-2 adaptor complex GO:0005886 GO:0016023 GO:0030123 GO:0005737 MAH D AP-3 adaptor complex GO:0030124 GO:0005737 MAH D AP-4 adaptor complex GO:0030125 GO:0005737 MAH D clathrin vesicle coat GO:0016023 GO:0030126 GO:0005737 MAH D COPI vesicle coat GO:0016023 GO:0030127 GO:0005737 MAH D COPII vesicle coat GO:0016023 GO:0030128 GO:0005737 MAH D clathrin coat of endocytic vesicle GO:0016023 GO:0030129 GO:0005737 MAH D clathrin coat of synaptic vesicle GO:0016023 GO:0030130 GO:0005737 MAH D clathrin coat of trans-Golgi network vesicle GO:0005794 GO:0016023 GO:0030131 GO:0005737 MAH D clathrin adaptor complex GO:0030132 GO:0005737 MAH D clathrin coat of coated pit GO:0005886 GO:0030133 GO:0016023 MAH D transport vesicle GO:0030134 GO:0005794 MAH D ER-Golgi transport vesicle GO:0016023 GO:0030135 GO:0016023 MAH D coated vesicle GO:0030136 GO:0016023 MAH D clathrin-coated vesicle GO:0030137 GO:0016023 MAH D COPI-coated vesicle GO:0030138 GO:0016023 MAH D COPII-coated vesicle GO:0030139 GO:0016023 MAH D endocytic vesicle GO:0030140 GO:0005794 MAH D trans-Golgi network transport vesicle GO:0016023 GO:0030141 GO:0016023 MAH D secretory granule GO:0030142 GO:0005794 MAH D Golgi-ER transport vesicle GO:0016023 GO:0030143 GO:0005794 MAH D inter-Golgi transport vesicle GO:0016023 GO:0030173 GO:0005623 MAH D Golgi membrane, integral protein GO:0005794 GO:0030175 GO:0005886 MAH D filopodium GO:0030176 GO:0005623 MAH D endoplasmic reticulum membrane, integral protein GO:0005783 New obsoletions in component ontology GO:0005799, coatomer: No reason given. GO:0005800, COPII vesicle: No reason given. GO:0005803, secretory vesicle: No reason given. GO:0005804, secretory vesicle membrane: No reason given. GO:0005805, ER-Golgi transport vesicle: No reason given. GO:0005806, Golgi-ER transport vesicle: No reason given. GO:0005807, inter-Golgi transport vesicle: No reason given. GO:0005808, Golgi-plasma membrane transport vesicle: No reason given. GO:0005809, Golgi-vacuole transport vesicle: No reason given. GO:0005810, endocytotic transport vesicle: No reason given. GO:0005906, clathrin adaptor: No reason given. GO:0005907, HA1 clathrin adaptor: No reason given. GO:0005908, HA2 clathrin adaptor: No reason given. GO:0005909, coated vesicle: No reason given. GO:0009580, thylakoid (sensu Bacteria): No reason given. GO:0016190, clathrin coat: No reason given. Term name changes in component ontology GO:0009503: light-harvesting complex --> light-harvesting complex (sensu Viridiplantae) GO:0009517: light-harvesting complex II --> PSII associated light-harvesting complex II GO:0009518: light-harvesting complex I --> PSI associated light-harvesting complex I GO:0009655: light-harvesting complex II, core complex --> PSII associated light-harvesting complex II, core complex GO:0009656: light-harvesting complex II, peripheral complex --> PSII associated light-harvesting complex II, peripheral complex New definitions for component ontology terms (7 new definitions) GO:0005718, nucleosome GO:0005795, Golgi stack GO:0005798, Golgi vesicle GO:0005905, coated pit GO:0009579, thylakoid GO:0009655, PSII associated light-harvesting complex II, core complex GO:0009656, PSII associated light-harvesting complex II, peripheral complex New term merges in component ontology GO:0016940 has been merged into GO:0005795, Golgi stack Term movements in component ontology: Terms movements under GO Slim term 'cell ; GO:0005623' - GO:0005804, secretory vesicle membrane Terms movements under GO Slim term 'cytoplasm ; GO:0005737' - GO:0008021, synaptic vesicle - GO:0016190, clathrin coat Terms movements under GO Slim term 'Golgi apparatus ; GO:0005794' - GO:0005799, coatomer - GO:0005800, COPII vesicle - GO:0005803, secretory vesicle - GO:0005804, secretory vesicle membrane - GO:0005805, ER-Golgi transport vesicle - GO:0005806, Golgi-ER transport vesicle - GO:0005807, inter-Golgi transport vesicle - GO:0005808, Golgi-plasma membrane transport vesicle - GO:0005809, Golgi-vacuole transport vesicle - GO:0005810, endocytotic transport vesicle Terms movements under GO Slim term 'plasma membrane ; GO:0005886' - GO:0005906, clathrin adaptor - GO:0005907, HA1 clathrin adaptor - GO:0005908, HA2 clathrin adaptor - GO:0005909, coated vesicle - GO:0016190, clathrin coat Terms movements under GO Slim term 'plastid ; GO:0009536' - GO:0009502, photosynthetic electron transport chain - GO:0009512, cytochrome b6f complex - GO:0009521, photosystem - GO:0009522, photosystem I - GO:0009523, photosystem II - GO:0009538, photosystem I reaction center - GO:0009539, photosystem II reaction center - GO:0009654, oxygen evolving complex Terms movements under GO Slim term 'thylakoid ; GO:0009579' - GO:0009580, thylakoid (sensu Bacteria) Terms movements under GO Slim term 'cytoplasmic vesicle ; GO:0016023' - GO:0005799, coatomer - GO:0005800, COPII vesicle - GO:0005803, secretory vesicle - GO:0005804, secretory vesicle membrane - GO:0005805, ER-Golgi transport vesicle - GO:0005806, Golgi-ER transport vesicle - GO:0005807, inter-Golgi transport vesicle - GO:0005808, Golgi-plasma membrane transport vesicle - GO:0005809, Golgi-vacuole transport vesicle - GO:0005810, endocytotic transport vesicle + GO:0008021, synaptic vesicle - GO:0017119, Golgi transport complex New terms in function ontology (29 new terms) GO:0001565 GO:0004872 MGI D phorbol ester receptor GO:0001566 GO:0004872 MGI D non-kinase phorbol ester receptor GO:0030106 GO:0004872 MAH D MHC class I receptor GO:0030107 GO:0004872 MAH D HLA-A specific inhibitory MHC class I receptor GO:0030108 GO:0004872 MAH D HLA-A specific activating MHC class I receptor GO:0030109 GO:0004872 MAH D HLA-B specific inhibitory MHC class I receptor GO:0030110 GO:0004872 MAH D HLA-C specific inhibitory MHC class I receptor GO:0030116 GO:0005102 MAH D glial cell line-derived neurotrophic factor receptor ligand GO:0030144 GO:0003824 MAH D alpha-1,3(6)-mannosylglycoprotein beta-1,6-N-acetyl-glucosaminyltransferase GO:0030145 GO:0005488 MAH D manganese binding GO:0030151 GO:0005488 MAH D molybdenum binding GO:0030156 GO:0005102 MAH D benzodiazepine receptor ligand GO:0030158 GO:0003824 MAH D protein xylosyltransferase GO:0030159 GO:0004871 MAH D receptor signaling complex scaffold protein GO:0030160 GO:0004871 MAH D GKAP/Homer scaffold protein GO:0030161 GO:0003824 MAH D calpain inhibitor GO:0030165 GO:0005515 MAH D PDZ-domain binding GO:0030169 GO:0005515 MAH D low-density lipoprotein binding GO:0030170 GO:0005488 MAH D pyridoxal phosphate binding GO:0030171 GO:0005216 MAH D voltage-gated proton channel GO:0030172 GO:0005515 MAH D troponin C binding GO:0030184 GO:0005215 MAH D nitric oxide transporter GO:0030188 GO:0030188 MAH D chaperone regulator GO:0030189 GO:0003824 MAH D chaperone activator GO:0030188 GO:0030190 GO:0003824 MAH D chaperone inhibitor GO:0030188 GO:0030191 GO:0003824 MAH D Hsp70/Hsc70 chaperone inhibitor GO:0030188 GO:0030192 GO:0030188 MAH D Hsp70/Hsc70 chaperone regulator GO:0030196 GO:0003824 MAH D cyanide hydratase GO:0030197 GO:0005198 MAH D extracellular matrix protein, lubricant New obsoletions in function ontology GO:0005050, peroxisome receptor: No reason given. GO:0005054, peroxisome integral membrane receptor: No reason given. Term name changes in function ontology GO:0003954: NADH2 dehydrogenase --> NADH dehydrogenase New definitions for function ontology terms (12 new definitions) GO:0004175, endopeptidase GO:0005041, low-density lipoprotein receptor GO:0005201, extracellular matrix structural protein GO:0005244, voltage-gated ion channel GO:0008083, growth factor GO:0030020, extracellular matrix structural protein conferring tensile strength GO:0030021, extracellular matrix structural protein conferring compression resistance GO:0030022, extracellular matrix protein, adhesive GO:0030023, extracellular matrix protein conferring elasticity GO:0030051, FK506-binding isomerase GO:0030052, parvulin GO:0030053, immunophilin New term merges in function ontology GO:0003710 has been merged into GO:0016563, transcriptional activator Term movements in function ontology: Terms movements under GO Slim term 'nucleotide binding ; GO:0000166' + GO:0000260, hydrogen-translocating V-type ATPase + GO:0000261, sodium-translocating V-type ATPase + GO:0003763, chaperonin ATPase + GO:0003936, hydrogen-transporting two-sector ATPase + GO:0004002, adenosinetriphosphatase + GO:0004003, ATP dependent DNA helicase + GO:0004004, ATP dependent RNA helicase + GO:0004005, plasma membrane cation-transporting ATPase + GO:0004007, heavy metal-exporting ATPase + GO:0004008, copper-exporting ATPase + GO:0004009, ATP-binding cassette (ABC) transporter + GO:0004012, magnesium-ATPase + GO:0005260, channel-conductance-controlling ATPase + GO:0005325, peroxisomal fatty acyl coenzyme A transporter + GO:0005388, calcium-transporting ATPase + GO:0005391, sodium/potassium-exchanging ATPase + GO:0005395, eye pigment precursor transporter + GO:0005396, transmembrane conductance regulator + GO:0008026, ATP dependent helicase + GO:0008094, DNA dependent adenosinetriphosphatase + GO:0008186, RNA dependent adenosinetriphosphatase + GO:0008551, cadmium-exporting ATPase + GO:0008552, zinc, cadmium, cobalt, nickel, lead-efflux ATPase + GO:0008553, hydrogen-exporting ATPase + GO:0008554, sodium-exporting ATPase + GO:0008555, chloride-transporting ATPase + GO:0008556, potassium-transporting ATPase + GO:0008557, aminophospholipid-transporting ATPase + GO:0008558, guanine-transporting ATPase + GO:0008559, xenobiotic-transporting ATPase + GO:0008560, steroid-transporting ATPase + GO:0008563, alpha-factor sex pheromone exporter + GO:0008564, protein-secreting ATPase + GO:0008566, mitochondrial protein-transporting ATPase + GO:0008567, dynein ATPase + GO:0008568, microtubule-severing ATPase + GO:0008569, minus-end-directed kinesin ATPase + GO:0008570, myosin ATPase + GO:0008571, non-chaperonin molecular chaperone ATPase + GO:0008572, nucleoplasmin ATPase + GO:0008573, peroxisome-assembly ATPase + GO:0008574, plus-end-directed kinesin ATPase + GO:0008575, proteasome ATPase + GO:0008576, vesicle-fusing ATPase + GO:0008900, hydrogen/potassium-exchanging ATPase + GO:0015406, ABC-type uptake permease + GO:0015407, monosaccharide-transporting ATPase + GO:0015408, ferric-transporting ATPase + GO:0015410, manganese-transporting ATPase + GO:0015411, taurine (2-aminoethane sulfonate) porter + GO:0015412, molybdate porter + GO:0015413, nickel porter + GO:0015414, nitrate-transporting ATPase + GO:0015415, phosphate porter + GO:0015416, phosphonate/organo-phosphate ester porter (broad specificity) + GO:0015417, polyamine porter + GO:0015418, quaternary amine uptake transporter + GO:0015419, sulfate/thiosulfate porter + GO:0015420, vitamin B12 porter + GO:0015421, oligopeptide-transporting ATPase + GO:0015422, oligosaccharide-transporting ATPase + GO:0015423, maltose-transporting ATPase + GO:0015424, amino acid-transporting ATPase + GO:0015425, nonpolar-amino acid-transporting ATPase + GO:0015426, polar amino acid uptake transporter + GO:0015427, ABC-type efflux porter + GO:0015428, type I protein secretor + GO:0015429, peroxisomal fatty acyl transporter + GO:0015430, glycerol-3-phosphate-transporting ATPase + GO:0015431, conjugate transporter + GO:0015432, bile acid porter + GO:0015433, major histocompatibility peptide transporter + GO:0015434, cadmium-transporting ATPase + GO:0015435, ABC-type efflux permease + GO:0015436, capsular-polysaccharide-transporting ATPase + GO:0015437, lipopolysaccharide-transporting ATPase + GO:0015438, teichoic-acid-transporting ATPase + GO:0015439, heme-transporting ATPase + GO:0015440, peptide-transporting ATPase + GO:0015441, beta-glucan-transporting ATPase + GO:0015442, hydrogen-/sodium-translocating ATPase + GO:0015443, sodium-transporting two-sector ATPase + GO:0015444, magnesium-importing ATPase + GO:0015445, silver-exporting ATPase + GO:0015446, arsenite-transporting ATPase + GO:0015462, protein-transporting ATPase + GO:0015594, putrescine porter + GO:0015595, spermidine porter + GO:0015596, glycine betaine/proline porter + GO:0015597, histidine/arginine/lysine/ornithine porter + GO:0015598, arginine porter + GO:0015599, glutamine porter + GO:0015600, glutamate/aspartate porter + GO:0015601, cystine/diaminopimelate porter + GO:0015602, leucine/isoleucine/valine porter + GO:0015608, carbohydrate uptake transporter + GO:0015609, malto-oligosaccharide porter + GO:0015610, glycerol-phosphate porter + GO:0015611, ribose porter + GO:0015612, arabinose porter + GO:0015613, galactose/glucose (methylgalactoside) porter + GO:0015614, xylose porter + GO:0015615, D-allose porter + GO:0015616, DNA translocase + GO:0015617, pilin/fimbrilin exporter + GO:0015618, potassium-uptake-ATPase + GO:0015619, thiamin, thiamin pyrophosphate porter + GO:0015623, ferric/ferric-dicitrate porter + GO:0015624, ferric-enterobactin porter + GO:0015625, ferric-hydroxamate porter + GO:0015632, cobalt porter + GO:0015633, zinc porter + GO:0015662, P-type ATPase + GO:0016463, zinc-exporting ATPase + GO:0016464, chloroplast protein-transporting ATPase + GO:0016466, hydrogen-translocating A-type ATPase + GO:0016467, hydrogen-translocating F-type ATPase + GO:0016468, sodium-translocating F-type ATPase + GO:0016821, hydrolase, acting on acid anhydrides, - involved in cellular and subcellular movement + GO:0016887, ATPase + GO:0017116, single-stranded DNA dependent ATP dependent DNA helicase Terms movements under GO Slim term 'enzyme ; GO:0003824' - GO:0000261, sodium-translocating V-type ATPase - GO:0005388, calcium-transporting ATPase - GO:0005391, sodium/potassium-exchanging ATPase - GO:0008551, cadmium-exporting ATPase - GO:0008552, zinc, cadmium, cobalt, nickel, lead-efflux ATPase - GO:0008553, hydrogen-exporting ATPase - GO:0008554, sodium-exporting ATPase - GO:0008555, chloride-transporting ATPase - GO:0008556, potassium-transporting ATPase - GO:0008557, aminophospholipid-transporting ATPase - GO:0008564, protein-secreting ATPase - GO:0008566, mitochondrial protein-transporting ATPase - GO:0015442, hydrogen-/sodium-translocating ATPase - GO:0015443, sodium-transporting two-sector ATPase - GO:0015444, magnesium-importing ATPase - GO:0015445, silver-exporting ATPase - GO:0015446, arsenite-transporting ATPase - GO:0015462, protein-transporting ATPase - GO:0015616, DNA translocase - GO:0015617, pilin/fimbrilin exporter - GO:0015618, potassium-uptake-ATPase - GO:0015662, P-type ATPase - GO:0016463, zinc-exporting ATPase - GO:0016464, chloroplast protein-transporting ATPase - GO:0016468, sodium-translocating F-type ATPase - GO:0016887, ATPase Terms movements under GO Slim term 'receptor ; GO:0004872' + GO:0004697, protein kinase C + GO:0004698, calcium dependent protein kinase C + GO:0004699, calcium independent protein kinase C + GO:0004700, atypical protein kinase C + GO:0004701, diacylglycerol-activated/phospholipid dependent protein kinase C - GO:0005050, peroxisome receptor - GO:0005054, peroxisome integral membrane receptor Terms movements under GO Slim term 'transporter ; GO:0005215' + GO:0001524, globin + GO:0004498, calcidiol 1-monooxygenase + GO:0004500, dopamine-beta-monooxygenase + GO:0004507, steroid 11-beta-monooxygenase + GO:0004508, steroid 17-alpha-monooxygenase + GO:0004509, steroid 21-monooxygenase + GO:0004796, thromboxane-A synthase + GO:0005344, oxygen transporter + GO:0008116, prostaglandin-I synthase + GO:0008123, cholesterol 7-alpha-monooxygenase + GO:0008387, steroid 7-alpha-hydroxylase + GO:0008388, testosterone 15-alpha-hydroxylase + GO:0008389, coumarin 7-hydroxylase + GO:0008390, testosterone 16-alpha-hydroxylase + GO:0008391, arachidonic acid monooxygenase + GO:0008392, arachidonic acid epoxygenase + GO:0008393, fatty acid (omega-1)-hydroxylase + GO:0008394, olfactory-specific steroid hydroxylase + GO:0008396, oxysterol 7-alpha-hydroxylase + GO:0008397, sterol 12-alpha-hydroxylase + GO:0008398, lanosterol 14-alpha-demethylase + GO:0008399, naphthalene hydroxylase + GO:0008401, retinoic acid 4-hydroxylase + GO:0008402, aromatase + GO:0008403, 25-hydroxycholecalciferol-24-hydroxylase + GO:0008404, arachidonic acid 14,15-epoxygenase + GO:0008405, arachidonic acid 11,12-epoxygenase + GO:0015034, cytochrome P450 + GO:0016968, P450 nitric oxide reductase + GO:0016969, hemerythrin + GO:0016970, hemocyanin New terms in process ontology (67 new terms) GO:0001561 GO:0006629 MGI D fatty acid alpha-oxidation GO:0001562 GO:0006950 MGI D response to protozoa GO:0009607 GO:0001563 GO:0006950 MGI D perception of protozoa GO:0009605 GO:0009607 GO:0001564 GO:0006950 MGI D resistance to pathogenic protozoa GO:0009607 GO:0009861 GO:0006950 TAIR D jasmonic acid/ethylene dependent systemic resistance GO:0009607 GO:0030071 GO:0007049 MAH D regulation of mitotic metaphase/anaphase transition GO:0030072 GO:0007267 MAH D peptide hormone secretion GO:0015031 GO:0030073 GO:0007267 MAH D insulin secretion GO:0015031 GO:0030091 GO:0008152 MAH D protein repair GO:0030092 GO:0016043 MAH D regulation of flagella biosynthesis GO:0030097 GO:0007275 MAH D hemopoiesis GO:0030098 GO:0007275 MAH D lymphocytic blood cell differentiation GO:0030099 GO:0007275 MAH D myeloid blood cell differentiation GO:0030100 GO:0015031 MAH D regulation of endocytosis GO:0030101 GO:0006950 MAH D activation of natural killer cell activity GO:0009607 GO:0030102 GO:0006950 MAH D inhibition of natural killer cell activity GO:0009607 GO:0030103 GO:0007267 MAH D vasopressin secretion GO:0015031 GO:0030104 GO:0007582 MAH D water homeostasis GO:0030105 GO:0006950 MAH D anaphylaxis GO:0009607 GO:0030111 GO:0007165 MAH D regulation of Wnt receptor signaling pathway GO:0030146 GO:0007582 MAH D diuresis GO:0030147 GO:0007582 MAH D natriuresis GO:0030148 GO:0006629 MAH D sphingolipid biosynthesis GO:0009058 GO:0030149 GO:0006629 MAH D sphingolipid catabolism GO:0009056 GO:0030150 GO:0008152 MAH D mitochondrial matrix protein import GO:0030152 GO:0008152 MAH D bacteriocin biosynthesis GO:0009628 GO:0030153 GO:0008152 MAH D bacteriocin immunity GO:0009628 GO:0030154 GO:0030154 MAH D cell differentiation GO:0030155 GO:0007154 MAH D cell adhesion regulation GO:0030157 GO:0007582 MAH D pancreatic juice secretion GO:0030162 GO:0008152 MAH D regulation of proteolysis and peptidolysis GO:0009056 GO:0030163 GO:0008152 MAH D protein degradation GO:0030164 GO:0008152 MAH D protein denaturation GO:0030166 GO:0005975 MAH D proteoglycan biosynthesis GO:0009058 GO:0030167 GO:0005975 MAH D proteoglycan catabolism GO:0009056 GO:0030168 GO:0007582 MAH D platelet activation GO:0030174 GO:0006259 MAH D DNA replication licensing GO:0007049 GO:0030177 GO:0007165 MAH D activation of Wnt receptor signaling pathway GO:0030178 GO:0007165 MAH D inhibition of Wnt receptor signaling pathway GO:0030179 GO:0007165 MAH D Notch receptor signaling pathway GO:0030180 GO:0006810 MAH D solute:solute exchange GO:0030181 GO:0006810 MAH D sodium:calcium exchange GO:0030182 GO:0030154 MAH D neuron differentiation GO:0030183 GO:0007275 MAH D B cell differentiation GO:0030154 GO:0030185 GO:0006810 MAH D nitric oxide transport GO:0030186 GO:0006519 MAH D melatonin metabolism GO:0030187 GO:0006519 MAH D melatonin biosynthesis GO:0030193 GO:0007582 MAH D regulation of blood coagulation GO:0030194 GO:0007582 MAH D activation of blood coagulation GO:0030195 GO:0007582 MAH D inhibition of blood coagulation GO:0030198 GO:0007582 MAH D extracellular matrix organization and biogenesis GO:0030199 GO:0007582 MAH D collagen fibril organization GO:0030200 GO:0005975 MAH D heparan sulfate proteoglycan catabolism GO:0009056 GO:0030201 GO:0005975 MAH D heparan sulfate proteoglycan metabolism GO:0030202 GO:0005975 MAH D heparin metabolism GO:0030203 GO:0005975 MAH D glycosaminoglycan metabolism GO:0030204 GO:0005975 MAH D chondroitin sulfate metabolism GO:0030205 GO:0005975 MAH D dermatan sulfate metabolism GO:0030206 GO:0005975 MAH D chondroitin sulfate biosynthesis GO:0030207 GO:0005975 MAH D chondroitin sulfate catabolism GO:0030208 GO:0005975 MAH D dermatan sulfate biosynthesis GO:0030209 GO:0005975 MAH D dermatan sulfate catabolism GO:0030210 GO:0005975 MAH D heparin biosynthesis GO:0030211 GO:0005975 MAH D heparin catabolism GO:0030212 GO:0005975 MAH D hyaluronan metabolism GO:0030213 GO:0005975 MAH D hyaluronan biosynthesis GO:0030214 GO:0005975 MAH D hyaluronan catabolism Term name changes in process ontology GO:0006325: chromatin architecture --> establishment and/or maintenance of chromatin architecture GO:0015012: heparin sulfate biosynthesis --> heparan sulfate proteoglycan biosynthesis GO:0015013: heparin sulfate biosynthesis, linkage to polypeptide --> heparan sulfate proteoglycan biosynthesis, linkage to polypeptide GO:0015014: heparin sulfate biosynthesis, polysaccharide chain biosynthesis --> heparan sulfate proteoglycan biosynthesis, polysaccharide chain biosynthesis GO:0015015: heparin sulfate biosynthesis, enzymatic modification --> heparan sulfate proteoglycan biosynthesis, enzymatic modification New definitions for process ontology terms (9 new definitions) GO:0006029, proteoglycan metabolism GO:0006508, proteolysis and peptidolysis GO:0006665, sphingolipid metabolism GO:0007124, pseudohyphal growth GO:0007596, blood coagulation GO:0007597, blood coagulation, intrinsic pathway GO:0007598, blood coagulation, extrinsic pathway GO:0007599, hemostasis GO:0015012, heparan sulfate proteoglycan biosynthesis Term movements in process ontology: Terms movements under GO Slim term 'transcription ; GO:0006350' + GO:0006339, positive regulation of homeotic gene (trithorax group) + GO:0006340, negative regulation of homeotic gene (Polycomb group) Terms movements under GO Slim term 'stress response ; GO:0006950' - GO:0006952, defense response - GO:0006955, immune response Terms movements under GO Slim term 'biological_process ; GO:0008150' - GO:0007167, enzyme linked receptor protein signaling pathway - GO:0007168, receptor guanylyl cyclase signaling pathway - GO:0007169, transmembrane receptor protein tyrosine kinase signaling pathway - GO:0007170, transmembrane receptor protein tyrosine kinase ligand binding - GO:0007171, transmembrane receptor protein tyrosine kinase activation (dimerization) - GO:0007172, signal complex formation - GO:0007173, EGF receptor signaling pathway - GO:0007174, EGF receptor ligand processing - GO:0007175, EGF receptor inhibition - GO:0007176, EGF receptor modulation - GO:0007177, EGF receptor down regulation - GO:0007178, transmembrane receptor protein serine/threonine kinase signaling pathway - GO:0007179, TGFbeta receptor signaling pathway - GO:0007180, TGFbeta ligand binding to type II receptor - GO:0007181, TGFbeta receptor complex assembly - GO:0007182, common-partner SMAD protein phosphorylation - GO:0007183, SMAD protein heteromerization - GO:0007184, SMAD protein nuclear translocation - GO:0007185, transmembrane receptor protein tyrosine phosphatase signaling pathway - GO:0007200, G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) - GO:0007201, G-protein dissociation - GO:0007202, phospholipase C activation - GO:0007203, phosphatidylinositol-4,5 bisphosphate hydrolysis - GO:0007204, cytosolic calcium ion concentration elevation - GO:0007205, protein kinase C activation - GO:0007206, metabotropic glutamate receptor, phospholipase C activating pathway - GO:0007207, muscarinic acetyl choline receptor, phospholipase C activating pathway - GO:0007208, serotonin receptor, phospholipase C activating pathway - GO:0007209, tachykinin receptor, phospholipase C activating pathway - GO:0007600, sensory perception - GO:0007601, vision - GO:0007602, phototransduction - GO:0007603, phototransduction, visible light - GO:0007604, phototransduction, UV - GO:0007605, hearing - GO:0007606, chemosensory perception - GO:0007607, taste - GO:0007608, olfaction - GO:0007609, mechanosensory perception - GO:0008259, TGFbeta ligand binding to type I receptor - GO:0008286, insulin receptor signaling pathway - GO:0008293, torso receptor signaling pathway - GO:0008314, gurken receptor signaling pathway - GO:0008377, light-induced release of calcium from internal store - GO:0008543, FGF receptor signaling pathway - GO:0009581, perception of external stimulus - GO:0009582, perception of abiotic stimulus - GO:0009583, perception of light - GO:0009584, perception of visible light - GO:0009585, phytochrome mediated phototransduction - GO:0009586, rhodopsin mediated phototransduction - GO:0009587, phototrophin mediated phototransduction - GO:0009588, cryptochrome mediated phototransduction - GO:0009589, perception of UV - GO:0009590, perception of gravity - GO:0009591, perception of mechanical stimulus - GO:0009592, perception of sound - GO:0009593, perception of chemical substance - GO:0009594, perception of nutrients - GO:0009595, perception of biotic stimulus - GO:0009596, perception of pest/pathogen/parasite - GO:0009597, perception of viruses - GO:0009598, perception of pathogenic bacteria - GO:0009599, perception of pathogenic fungi - GO:0009600, perception of nematodes - GO:0009601, perception of insects - GO:0009602, perception of symbiont - GO:0009603, perception of symbiotic fungi - GO:0009604, perception of symbiotic bacteria - GO:0009681, perception of non-pathogenic bacteria - GO:0016037, absorption of light - GO:0016038, absorption of visible light - GO:0016039, absorption of UV light - GO:0016045, perception of bacteria - GO:0016046, perception of fungi - GO:0016047, perception of parasitic fungi - GO:0016048, perception of temperature - GO:0016056, rhodopsin mediated signaling - GO:0016057, changes in polarization state of photoreceptor cell membrane - GO:0016058, maintenance of rhodopsin mediated signaling - GO:0016059, deactivation of rhodopsin mediated signaling - GO:0016060, metarhodopsin inactivation - GO:0016061, regulation of light-activated channels - GO:0016062, adaptation of rhodopsin mediated signaling - GO:0017015, regulation of TGFbeta receptor signaling pathway Terms movements under GO Slim term 'metabolism ; GO:0008152' - GO:0016351, drug susceptibility/resistance - GO:0017144, drug metabolism SourceForge items closed this month: SF id Resolution SF item title GO ids added, if any none Statistics: Component: 820 terms, 38.7% defined (317 terms defined) Function: 4051 terms, 9.6% defined (389 terms defined) Process: 3112 terms, 17.1% defined (531 terms defined) Total: 7983 terms, 15.5% defined (1237 terms defined) Term errors none