216 Tetraodon cDNAs were prepared from 7 adult tissues by Genoscope, and aligned using BLAST and EST2GENOME (R. Mott, Comput Appl Biosci. 1997 13:477-8). Tetraodon cDNAs 1 {"default": {"contigviewbottom": "stack"}, "key": "tetraodon_cdna", "name": "Tetraodon cDNAs", "type": "cdna"} 217 Cytokine model, manually curated by Genoscope Cytokine 1 {"colour_key": "[biotype]", "label_key": "[biotype]"} 210 Evolutionary conserved regions ("Ecores") are inferred from alignments of the Fugu and Tetraodon genomes by Exofish, H. Roest Crollius et al., and grouped into contiguous, consistent sets ("Ecotigs") Takifugu Ecores 1 {"default": {"contigviewbottom": "stack"}} 209 Evolutionary conserved regions("Ecores") are inferred from alignments of the Chicken and Tetraodon genomes by Exofish, H. Roest Crollius et al., and grouped into contiguous, consistent sets ("Ecotigs") Chicken Ecores 1 {"default": {"contigviewbottom": "stack"}} 211 Evolutionary conserved regions ("Ecores") are inferred from alignments of the Human and Tetraodon genomes by Exofish, H. Roest Crollius et al., and grouped into contiguous, consistent sets ("Ecotigs") Human Ecores 1 {"default": {"contigviewbottom": "stack"}} 212 Evolutionary conserved regions ("Ecores") are inferred from alignments of the Mouse and Tetraodon genomes by Exofish, H. Roest Crollius et al., and grouped into contiguous, consistent sets ("Ecotigs") Mouse Ecores 1 {"default": {"contigviewbottom": "stack"}} 213 Evolutionary conserved regions ("Ecores") are inferred from alignments of the Rat and Tetraodon genomes by Exofish, H. Roest Crollius et al., and grouped into contiguous, consistent sets ("Ecotigs") Rat Ecores 1 {"default": {"contigviewbottom": "stack"}} 215 Takifugu cDNAs from NCBI RefSeq and ENA are aligned to the genome using Exonerate. Fugu cDNAs 1 {"default": {"contigviewbottom": "stack"}, "type": "cdna"} 214 Takifugu 'Expressed Sequence Tags' (ESTs) from dbEST are aligned to the genome using Exonerate. Fugu ESTs 1 {"type": "est"} 207 Ab initio prediction of protein coding genes by Geneid, with parameters customised for accuracy in Tetraodon sequences. Geneid prediction 1 \N 2 Ab initio prediction of protein coding genes by Genscan, with parameters customised for accuracy in Tetraodon sequences GSC 1 \N 204 Annotation generated by Genoscope, combining evidence from Geneid, Genscan, GeneWise and Exofish predictions with alignments of Tetraodon cDNAs to the genome. This was done automatically using GAZE with a custom-designed configuration and gene structure model. Genoscope import 1 {"caption": "Genes (Ensembl)", "colour_key": "[biotype]", "default": {"MultiBottom": "collapsed_label", "MultiTop": "gene_label", "alignsliceviewbottom": "as_collapsed_label", "contigviewbottom": "transcript_label", "contigviewtop": "gene_label", "cytoview": "gene_label"}, "key": "ensembl", "label_key": "[biotype]", "multi_name": "Ensembl genes, or Merged Ensembl and Havana genes", "name": "Ensembl genes"} 208 Alignment of a Uniprot protein to the genome by GeneWise. UniProt proteins 1 \N 218 HOX genes were manually curated by Genoscope. HOX (Genoscope) 1 {"colour_key": "[biotype]", "label_key": "[biotype]"} 79 Tetraodon cDNAs from NCBI RefSeq and ENA are aligned to the genome using Exonerate. Tetraodon cDNAs 1 {"default": {"contigviewbottom": "stack"}, "type": "cdna"} 81 Tetraodon 'Expressed Sequence Tags' (ESTs) from dbEST are aligned to the genome using Exonerate. Tetraodon ESTs 1 {"type": "est"}