1 2019-07-29 12:57:41 mt_genbank_import \N NC_024032.1 \N \N \N \N \N \N \N \N \N 2 2019-07-29 13:15:06 repeatmask_repbase_teleost \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker -nolow -species "Teleostei" -engine "crossmatch" HiveRepeatMasker \N \N \N 3 2019-07-29 19:22:13 dust \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/dustmasker \N HiveDust \N \N \N 4 2019-07-29 19:31:05 trf \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/trf \N HiveTRF \N \N \N 5 2019-07-29 19:41:54 eponine \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/java -epojar => /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/opt/eponine/libexec/eponine-scan.jar, -threshold => 0.999 HiveEponine \N \N \N 6 2019-07-29 19:42:05 cpg \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cpg_lh \N HiveCPG \N \N \N 7 2019-07-29 19:44:26 trnascan \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tRNAscan-SE \N HiveTRNAScan \N \N \N 8 2019-07-29 19:58:10 genscan HumanIso.smat \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/share/HumanIso.smat \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/genscan \N HiveGenscan \N \N \N 9 2019-08-05 17:54:19 ncrna \N \N /hps/nobackup2/production/ensembl/genebuild/production/fish/salmo_trutta/GCA_901001165.1//Rfam.cm \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N /hps/nobackup2/production/ensembl/genebu 14 2019-08-12 10:59:18 ensembl \N \N \N \N \N \N \N \N \N \N \N 39 2019-09-18 09:55:12 rnaseq_intron_support \N \N \N \N \N \N \N \N \N \N \N 32 2019-08-05 17:49:45 blastmirna \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/mirbase_22/all_mirnas.fa \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 HiveBlastmiRNA \N \N \N 37 2019-08-20 01:47:00 other_protein uniprot \N \N \N \N \N \N \N \N \N \N 40 \N rfamcmsearch \N 14.0 /hps/nobackup2/production/ensembl/genebuild/production/fish/salmo_trutta \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N \N 41 2020-01-07 00:00:00 codingdensity \N \N \N \N \N \N \N \N \N \N \N 42 2020-01-07 00:00:00 percentagerepeat \N \N \N \N \N \N \N \N \N \N \N 43 2020-01-07 00:00:00 longnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 44 2020-01-07 00:00:00 percentgc \N \N \N \N \N \N \N \N \N \N \N 45 2020-01-07 00:00:00 pseudogenedensity \N \N \N \N \N \N \N \N \N \N \N 46 2020-01-07 00:00:00 shortnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 47 2019-09-29 09:40:46 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 48 2019-09-29 09:40:46 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 49 2019-09-29 10:07:56 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 240 2023-01-25 14:15:01 cdd CDD 3.20 \N InterProScan 5.60-92.0 \N \N \N \N \N \N 206 2021-07-13 17:01:38 gene3d Gene3D 4.3.0 \N InterProScan 5.52-86.0 \N \N \N \N \N \N 272 2024-06-17 07:18:23 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 277 2024-06-17 07:23:45 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 273 2024-06-17 07:18:33 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 188 2021-01-10 15:01:09 pirsf PIRSF 3.10 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 275 2024-06-17 07:21:27 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 274 2024-06-17 07:20:09 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 192 2021-01-10 15:07:36 sfld SFLD 4 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 189 2021-01-10 15:03:03 prints PRINTS 42.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 248 2023-04-11 15:47:11 smart Smart 9.0 \N InterProScan 5.61-93.0 \N \N \N \N \N \N 194 2021-01-10 15:34:11 mobidblite MobiDBLite 2.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 191 2021-01-10 15:07:33 superfamily SuperFamily 1.75 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 200 2021-01-10 16:06:15 tmhmm TMHMM 2.0c \N InterProScan 5.48-83.0 \N \N \N \N \N \N 196 2021-01-10 15:39:32 ncoils ncoils 2.2.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 197 2021-01-10 15:41:01 signalp SignalP 4.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 278 2024-06-17 07:26:08 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 198 2021-01-10 15:58:26 seg Seg \N \N seg \N \N \N \N \N \N \N 282 2024-07-25 12:55:53 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 279 2024-07-22 10:08:32 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 96 2020-04-08 17:10:09 cdna_alignment_core \N \N \N \N \N \N \N \N \N \N \N 195 2021-01-10 15:35:35 tigrfam TIGRfam 15.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 280 2024-07-25 04:51:47 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N 276 2024-06-17 07:21:40 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N