1 2020-03-02 12:48:49 repeatmask_repbase_mammals \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker -nolow -species "mammals" -engine "crossmatch" HiveRepeatMasker \N \N \N 2 2020-03-02 18:21:36 dust \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/dustmasker \N HiveDust \N \N \N 3 2020-03-02 18:23:00 trf \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/trf \N HiveTRF \N \N \N 4 2020-03-02 18:31:45 eponine \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/java -epojar => /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/opt/eponine/libexec/eponine-scan.jar, -threshold => 0.999 HiveEponine \N \N \N 5 2020-03-02 18:33:04 cpg \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cpg_lh \N HiveCPG \N \N \N 6 2020-03-02 18:35:45 trnascan \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tRNAscan-SE \N HiveTRNAScan \N \N \N 7 2020-03-02 18:43:16 genscan HumanIso.smat \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/share/HumanIso.smat \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/genscan \N HiveGenscan \N \N \N 8 2020-03-11 08:55:16 ensembl \N \N \N \N \N \N \N \N \N \N \N 15 2020-03-10 10:47:30 ncrna \N \N /hps/nobackup2/production/ensembl/genebuild/production/mammals/phocoena_sinus/GCA_008692025.1//Rfam.cm \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N /hps/nobackup2/production/ensembl/genebu 16 2020-03-10 10:43:50 blastmirna \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/mirbase_22/all_mirnas.fa \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 HiveBlastmiRNA \N \N \N 21 \N rfamcmsearch \N 14.0 /hps/nobackup2/production/ensembl/genebuild/production/mammals/phocoena_sinus/GCA_008692025.1/ \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N \N 19 2020-03-11 11:50:43 other_protein uniprot \N \N \N \N \N \N \N \N \N \N 20 2020-03-11 11:50:43 projected_transcript homo_sapiens_core_99_38 \N \N \N \N \N \N \N \N \N \N 22 2020-03-12 08:50:22 rnaseq_intron_support \N \N \N \N \N \N \N \N \N \N \N 23 2020-04-08 16:21:22 longnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 24 2020-04-08 16:21:23 pseudogenedensity \N \N \N \N \N \N \N \N \N \N \N 25 2020-04-08 16:21:23 shortnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 26 2020-04-08 16:21:26 percentgc \N \N \N \N \N \N \N \N \N \N \N 27 2020-04-08 16:21:55 codingdensity \N \N \N \N \N \N \N \N \N \N \N 28 2020-04-08 16:22:23 percentagerepeat \N \N \N \N \N \N \N \N \N \N \N 29 2020-04-09 10:58:31 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 30 2020-04-09 10:58:31 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 31 2020-04-09 11:00:37 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 199 2024-06-17 03:54:38 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 140 2021-07-13 16:37:56 gene3d Gene3D 4.3.0 \N InterProScan 5.52-86.0 \N \N \N \N \N \N 193 2024-06-17 03:46:13 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 194 2024-06-17 03:49:00 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 195 2024-06-17 03:50:31 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 196 2024-06-17 03:51:58 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 121 2021-01-10 18:04:38 pirsf PIRSF 3.10 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 122 2021-01-10 18:06:04 prints PRINTS 42.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 124 2021-01-10 18:14:11 sfld SFLD 4 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 164 2023-01-25 16:14:27 cdd CDD 3.20 \N InterProScan 5.60-92.0 \N \N \N \N \N \N 178 2023-06-17 21:47:10 smart Smart 9.0 \N InterProScan 5.62-94.0 \N \N \N \N \N \N 128 2021-01-10 18:35:35 tigrfam TIGRfam 15.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 127 2021-01-10 18:35:33 mobidblite MobiDBLite 2.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 129 2021-01-10 18:35:51 ncoils ncoils 2.2.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 130 2021-01-10 18:37:41 signalp SignalP 4.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 131 2021-01-10 18:38:21 tmhmm TMHMM 2.0c \N InterProScan 5.48-83.0 \N \N \N \N \N \N 126 2021-01-10 18:23:17 superfamily SuperFamily 1.75 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 197 2024-06-17 03:52:54 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 132 2021-01-10 18:38:56 seg Seg \N \N seg \N \N \N \N \N \N \N 200 2024-07-22 10:07:53 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 202 2024-07-25 12:30:07 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 201 2024-07-25 03:44:11 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N 198 2024-06-17 03:53:51 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N