12 Alignments of female ovary 180 days after hatching 180 days after hatching RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Female ovary 180 days after hatching 180 days after hatching RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Female ovary 180 days after hatching 180 days after hatching", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 14 Spliced-read support for female ovary 180 days after hatching 180 days after hatching Female ovary 180 days after hatching 180 days after hatching intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Female ovary 180 days after hatching 180 days after hatching", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 32 Annotation generated from female ovary 180 days after hatching 180 days after hatching RNA-seq data Female ovary 180 days after hatching 180 days after hatching RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Female ovary 180 days after hatching 180 days after hatching", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 22 Alignments of female ovary 30 days after hatching 30 days after hatching RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Female ovary 30 days after hatching 30 days after hatching RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Female ovary 30 days after hatching 30 days after hatching", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 25 Spliced-read support for female ovary 30 days after hatching 30 days after hatching Female ovary 30 days after hatching 30 days after hatching intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Female ovary 30 days after hatching 30 days after hatching", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 33 Annotation generated from female ovary 30 days after hatching 30 days after hatching RNA-seq data Female ovary 30 days after hatching 30 days after hatching RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Female ovary 30 days after hatching 30 days after hatching", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 24 Alignments of female ovary 5 days after hatching 5 days after hatching RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Female ovary 5 days after hatching 5 days after hatching RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Female ovary 5 days after hatching 5 days after hatching", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 27 Spliced-read support for female ovary 5 days after hatching 5 days after hatching Female ovary 5 days after hatching 5 days after hatching intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Female ovary 5 days after hatching 5 days after hatching", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 34 Annotation generated from female ovary 5 days after hatching 5 days after hatching RNA-seq data Female ovary 5 days after hatching 5 days after hatching RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Female ovary 5 days after hatching 5 days after hatching", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 16 Alignments of male intestine RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Male intestine RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male intestine", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 17 Spliced-read support for male intestine Male intestine intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Male intestine", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 35 Annotation generated from male intestine RNA-seq data Male intestine RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male intestine", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 23 Alignments of male liver RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Male liver RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male liver", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 26 Spliced-read support for male liver Male liver intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Male liver", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 36 Annotation generated from male liver RNA-seq data Male liver RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male liver", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 11 Alignments of male testis 180 days after hatching 180 days after hatching RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Male testis 180 days after hatching 180 days after hatching RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male testis 180 days after hatching 180 days after hatching", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 15 Spliced-read support for male testis 180 days after hatching 180 days after hatching Male testis 180 days after hatching 180 days after hatching intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Male testis 180 days after hatching 180 days after hatching", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 37 Annotation generated from male testis 180 days after hatching 180 days after hatching RNA-seq data Male testis 180 days after hatching 180 days after hatching RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male testis 180 days after hatching 180 days after hatching", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 19 Alignments of male testis 30 days after hatching 30 days after hatching RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Male testis 30 days after hatching 30 days after hatching RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male testis 30 days after hatching 30 days after hatching", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 21 Spliced-read support for male testis 30 days after hatching 30 days after hatching Male testis 30 days after hatching 30 days after hatching intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Male testis 30 days after hatching 30 days after hatching", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 38 Annotation generated from male testis 30 days after hatching 30 days after hatching RNA-seq data Male testis 30 days after hatching 30 days after hatching RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male testis 30 days after hatching 30 days after hatching", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 18 Alignments of male testis 5 days after hatching 5 days after hatching RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Male testis 5 days after hatching 5 days after hatching RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male testis 5 days after hatching 5 days after hatching", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 20 Spliced-read support for male testis 5 days after hatching 5 days after hatching Male testis 5 days after hatching 5 days after hatching intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Male testis 5 days after hatching 5 days after hatching", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 39 Annotation generated from male testis 5 days after hatching 5 days after hatching RNA-seq data Male testis 5 days after hatching 5 days after hatching RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Male testis 5 days after hatching 5 days after hatching", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 10 Alignments of model organism or animal sample from oreochromis aureus RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Model organism or animal sample from oreochromis aureus RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Model organism or animal sample from oreochromis aureus", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 13 Spliced-read support for model organism or animal sample from oreochromis aureus Model organism or animal sample from oreochromis aureus intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Model organism or animal sample from oreochromis aureus", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 41 Annotation generated from model organism or animal sample from oreochromis aureus RNA-seq data Model organism or animal sample from oreochromis aureus RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Model organism or animal sample from oreochromis aureus", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 28 Alignments of not collected liver RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Not collected liver RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Not collected liver", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 30 Spliced-read support for not collected liver Not collected liver intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Not collected liver", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 42 Annotation generated from not collected liver RNA-seq data Not collected liver RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Not collected liver", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 29 Alignments of not collected spleen RNA-seq data. This BAM file can be downloaded from the Ensembl FTP site Not collected spleen RNA-seq alignments 1 {"colour_key": "bam", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq_bam", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Not collected spleen", "menu": "rnaseq", "group_order": 1, "column": "BAM files"}} 31 Spliced-read support for not collected spleen Not collected spleen intron-spanning reads 1 {"colour_key": "intron_support", "label_key": "", "zmenu": "Supporting_alignment", "type": "rnaseq", "additional_renderers": ["histogram", "Variable height"], "matrix": {"group": "ENA", "row": "Not collected spleen", "menu": "rnaseq", "group_order": 2, "column": "Intron-spanning reads"}} 43 Annotation generated from not collected spleen RNA-seq data Not collected spleen RNA-seq gene models 1 {"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "zmenu": "RNASeq", "type": "rnaseq", "matrix": {"group": "ENA", "row": "Not collected spleen", "menu": "rnaseq", "group_order": 3, "column": "Gene models"}} 45 For various species, proteins from UniProtKB are aligned to the genome with GeneWise. Other species proteins 1 {"protein_align_feature": {"do_not_display": "1"}}