1 2017-05-12 13:39:11 repeatmask_repbase_rodents \N \N \N \N \N /nfs/software/ensembl/RHEL7/linuxbrew/bin/RepeatMasker -nolow -species "rodents" -engine "crossmatch" HiveRepeatMasker \N \N \N 2 2017-05-12 14:55:18 dust \N \N \N \N \N /nfs/software/ensembl/RHEL7/linuxbrew/bin/tcdust \N \N \N \N \N 3 2017-05-12 15:06:22 trf \N \N \N \N \N /nfs/software/ensembl/RHEL7/linuxbrew/bin/trf \N HiveTRF \N \N \N 4 2017-05-12 15:17:32 eponine \N \N \N \N \N /nfs/software/ensembl/RHEL7/jenv/shims/java -epojar => /nfs/software/ensembl/RHEL7/linuxbrew/Cellar/eponine/1.0/libexec/eponine-scan.jar, -threshold => 0.999 HiveEponine \N \N \N 5 2017-05-12 15:26:18 cpg \N \N \N \N \N /nfs/software/ensembl/RHEL7/linuxbrew/bin/cpg_lh \N HiveCPG \N \N \N 6 2017-05-12 15:26:56 trnascan \N \N \N \N \N /nfs/software/ensembl/RHEL7/linuxbrew/bin/tRNAscan-SE \N HiveTRNAScan \N \N \N 7 2017-05-12 15:32:43 genscan HumanIso.smat \N /nfs/software/ensembl/RHEL7/linuxbrew/share/HumanIso.smat \N \N /nfs/software/ensembl/RHEL7/linuxbrew/bin/genscan \N HiveGenscan \N \N \N 8 2017-05-12 15:41:27 uniprot \N 2017_04 /hps/nobackup/production/ensembl/genebuild/blastdb/uniprot/uniprot_2017_04/uniprot_vertebrate \N \N /nfs/software/ensembl/RHEL7/linuxbrew/bin/blastp -num_threads 3 -window_size 40 \N \N \N \N 9 2017-05-12 15:41:42 vertrna \N 2016_04 /nfs/production/panda/ensembl/genebuild/blastdb/vertrna/129/embl_vertrna-1 \N \N /nfs/software/ensembl/RHEL7/linuxbrew/bin/tblastn -num_threads 3 -window_size 40 \N \N \N \N 10 2017-05-12 15:43:00 unigene \N 2016_10 /nfs/production/panda/ensembl/genebuild/blastdb/unigene/unigene \N \N /nfs/software/ensembl/RHEL7/linuxbrew/bin/tblastn -num_threads 3 -window_size 40 \N \N \N \N 11 2017-05-25 09:56:29 mgp_import \N v0.5 \N \N \N \N \N GTFLoader \N \N \N 274 2021-01-10 12:20:52 tigrfam TIGRfam 15.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 271 2021-01-10 12:19:56 superfamily SuperFamily 1.75 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 321 2023-06-17 21:47:16 smart Smart 9.0 \N InterProScan 5.62-94.0 \N \N \N \N \N \N 275 2021-01-10 12:22:23 mobidblite MobiDBLite 2.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 341 2024-06-17 06:18:17 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 268 2021-01-10 12:17:55 pirsf PIRSF 3.10 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 344 2024-06-17 06:19:19 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 339 2024-06-17 06:15:44 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 283 2021-07-13 16:26:23 gene3d Gene3D 4.3.0 \N InterProScan 5.52-86.0 \N \N \N \N \N \N 52 2019-01-10 00:00:00 percentagerepeat \N \N \N \N \N \N \N \N \N \N \N 53 2019-01-10 00:00:00 shortnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 54 2019-01-10 00:00:00 codingdensity \N \N \N \N \N \N \N \N \N \N \N 55 2019-01-10 00:00:00 percentgc \N \N \N \N \N \N \N \N \N \N \N 56 2019-01-10 00:00:00 longnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 57 2007-09-06 09:34:13 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 58 2019-01-10 00:00:00 pseudogenedensity \N \N \N \N \N \N \N \N \N \N \N 346 2024-07-22 10:07:34 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 60 2018-01-29 16:42:33 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 61 2018-01-29 16:47:29 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 348 2024-07-25 12:41:18 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 267 2021-01-10 12:17:52 prints PRINTS 42.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 340 2024-06-17 06:18:00 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 312 2023-01-25 16:09:44 cdd CDD 3.20 \N InterProScan 5.60-92.0 \N \N \N \N \N \N 273 2021-01-10 12:20:50 ncoils ncoils 2.2.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 276 2021-01-10 12:22:27 signalp SignalP 4.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 277 2021-01-10 12:22:53 tmhmm TMHMM 2.0c \N InterProScan 5.48-83.0 \N \N \N \N \N \N 278 2021-01-10 12:23:44 seg Seg \N \N seg \N \N \N \N \N \N \N 343 2024-06-17 06:18:58 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 270 2021-01-10 12:18:36 sfld SFLD 4 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 347 2024-07-25 12:13:30 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N 342 2024-06-17 06:18:38 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 345 2024-06-17 06:37:02 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N