23	Paired-end 79 bp RNAseq reads from a squirrel. Data were obtained from GEO and aligned to the SpeTri2.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/ictidomys_tridecemlineatus/SpeTri2.0/rnaseq/">Ensembl FTP</a> (file:<a href="http://ftp.ensembl.org/pub/data_files/ictidomys_tridecemlineatus/SpeTri2.0/rnaseq/SpeTri2.0.ENA.eye.1.bam">SpeTri2.0.ENA.eye.1.bam</a>).	Ictidomys tridecemlineatus eye RNAseq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "eye"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
24	Paired-end 79 bp RNAseq reads from a squirrel. Data were obtained from GEO and aligned to the SpeTri2.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/ictidomys_tridecemlineatus/SpeTri2.0/rnaseq/">Ensembl FTP</a> (file:<a href="http://ftp.ensembl.org/pub/data_files/ictidomys_tridecemlineatus/SpeTri2.0/rnaseq/SpeTri2.0.merged.1.bam">SpeTri2.0.merged.1.bam</a>).	Ictidomys tridecemlineatus merged RNAseq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
25	Paired-end 79 bp RNAseq reads from a squirrel. Data were obtained from GEO and aligned to the SpeTri2.0 assembly using BWA. Download this BAM file from the <a href="http://ftp.ensembl.org/pub/data_files/ictidomys_tridecemlineatus/SpeTri2.0/rnaseq/">Ensembl FTP</a> (file:<a href="http://ftp.ensembl.org/pub/data_files/ictidomys_tridecemlineatus/SpeTri2.0/rnaseq/SpeTri2.0.ENA.retina.1.bam">SpeTri2.0.ENA.retina.1.bam</a>).	Ictidomys tridecemlineatus retina RNAseq alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "retina"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
17	Spliced RNASeq read support for squirrel in SRX1981364, SRX1981365, SRX1981365, SRX1981364, 	Ictidomys tridecemlineatus eye intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "eye"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
15	Annotation generated using only RNASeq data from squirrel SRX1981364, SRX1981365, SRX1981365, SRX1981364,  tissue.	Ictidomys tridecemlineatus eye RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "eye"}, "type": "rnaseq", "zmenu": "RNASeq"}
16	Spliced RNASeq read support for squirrel for SRX1981364, SRX1981365, SRX1981365, SRX1981364, .	Ictidomys tridecemlineatus eye intron-spanning reads	1	\N
19	Spliced RNASeq read support for squirrel.	Ictidomys tridecemlineatus merged intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
14	Annotation generated using only RNASeq data from squirrel.	Ictidomys tridecemlineatus merged RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq"}
18	Spliced RNASeq read support for squirrel.	Ictidomys tridecemlineatus merged intron-spanning reads	1	\N
21	Spliced RNASeq read support for squirrel in SRX1981368, SRX1981366, SRX1981366, SRX1981367, SRX1981367, SRX1981368, 	Ictidomys tridecemlineatus retina intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "retina"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
13	Annotation generated using only RNASeq data from squirrel SRX1981368, SRX1981366, SRX1981366, SRX1981367, SRX1981367, SRX1981368,  tissue.	Ictidomys tridecemlineatus retina RNASeq	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "retina"}, "type": "rnaseq", "zmenu": "RNASeq"}
20	Spliced RNASeq read support for squirrel for SRX1981368, SRX1981366, SRX1981366, SRX1981367, SRX1981367, SRX1981368, .	Ictidomys tridecemlineatus retina intron-spanning reads	1	\N
22	For various species, proteins from <a rel="external" href="http://www.uniprot.org/">UniProtKB</a> are aligned to the genome with <a rel="external" href="http://genome.cshlp.org/content/14/5/988.abstract?maxtoshow=&amp%3bHITS=10&amp%3bhits=10&amp%3bRESULTFORMAT=&amp%3bandorexactfulltext=and&amp%3bsearchid=1&amp%3bFIRSTINDEX=0&amp%3bsortspec=relevance&amp%3bvolume=14&amp%3bfirstpage=988&amp%3bresourcetype=HWCIT">GeneWise</a>.	Other species proteins	1	{"protein_align_feature": {"do_not_display": "1"}}