1 0000-00-00 00:00:00 VendorMap \N \N \N \N \N \N \N \N \N \N \N 2 0000-00-00 00:00:00 RawValue \N \N \N \N \N \N \N \N \N \N \N 3 0000-00-00 00:00:00 VSN_GLOG \N \N \N \N \N \N \N \N \N \N \N 6 0000-00-00 00:00:00 LiftOver \N \N \N \N \N \N \N \N \N \N \N 7 0000-00-00 00:00:00 Nessie \N \N \N \N \N \N \N \N \N \N \N 8 0000-00-00 00:00:00 SangerPCR \N \N \N \N \N \N \N \N \N \N \N 14 2007-05-30 15:14:33 Nessie_NG_STD_2 \N \N \N nessie 0.13 nessie --distribution="weibull" --fit-method="slope" --replicates=2 --onestep="/nfs/acari/graef/bin/train_state.para" Nessie \N \N \N 10 2007-05-11 10:01:29 AlignProbe \N \N \N exonerate 0.9.0 exonerate-0.9.0 \N AlignProbes \N \N \N 11 0000-00-00 00:00:00 Parzen \N \N \N \N \N \N \N \N \N \N \N 12 0000-00-00 00:00:00 Wiggle \N \N \N \N \N \N \N \N \N \N \N 13 0000-00-00 00:00:00 HitList \N \N \N \N \N \N \N \N \N \N \N 15 0000-00-00 00:00:00 Co-occurrence_Overlap \N \N \N \N \N \N \N \N \N \N \N 16 \N Regulatory_Build \N \N \N \N \N \N \N \N \N \N \N 67 2014-01-27 15:58:33 TarBase \N 8.0 \N \N \N \N \N \N \N \N \N 19 0000-00-00 00:00:00 VISTA \N \N \N \N \N \N \N \N \N \N \N 22 0000-00-00 00:00:00 T.Biweight \N \N \N \N \N \N \N \N \N \N \N 23 0000-00-00 00:00:00 SWEmbl_default \N \N \N SWEmbl 2008-08-03 SWEmbl -f 150 -m 8 -p 0.04 -P 0.5 -d 70 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 24 2008-11-04 16:54:27 SWEmbl_R015_f150_d150 \N \N \N SWEmbl 2.7 SWEMBL.2.7 -R 0.015 -f 150 -d 150 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 121 2017-04-10 16:19:30 ProbeAlign_transcript \N \N \N \N \N \N \N \N \N \N \N 122 2017-04-10 16:19:30 ProbeAlign_genomic \N \N \N \N \N \N \N \N \N \N \N 164 2024-06-04 09:42:17 probe2transcript \N \N \N \N \N \N \N \N \N \N \N 38 0000-00-00 00:00:00 SWEmbl_default_Broad_Control \N \N \N SWEmbl 2008-08-03 SWEmbl -f 150 -m 8 -p 0.04 -P 0.5 -d 70 -r /lustre/scratch103/ensembl/ds19/tmp/human/raw_fastq/ENCODE/BroadChipSeq/bwa/K562_Control.bed.sorted.gz Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 39 2010-01-26 16:33:16 SWEmbl_default_Yale_Control \N \N \N SWEmbl 2008-08-03 SWEmbl -f 150 -m 8 -p 0.04 -P 0.5 -d 70 -r /lustre/scratch103/ensembl/ds19/tmp/human/raw_fastq/ENCODE/YaleChipSeq/bwa/K562_Control.bed.sorted.gz Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 40 2010-01-26 17:46:38 SWEmbl_default_Hudsonalpha_Control \N \N \N SWEmbl 2008-08-03 SWEmbl -f 150 -m 8 -p 0.04 -P 0.5 -d 70 -r /lustre/scratch103/ensembl/ds19/tmp/human/raw_fastq/ENCODE/HudsonalphaChipSeq/bwa/K562_Control.bed.sorted.gz Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 41 2010-03-25 13:02:05 SWEmbl_R015_D150 \N \N \N SWEmbl 2008-08-03 SWEmbl -f 150 -R 0.015 -d 150 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 42 2010-03-25 15:18:19 SWEmbl_R0025_D150 \N \N \N SWEmbl 2008-08-03 SWEmbl -f 150 -R 0.0025 -d 150 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 134 2018-09-05 14:40:14 remove_duplicates \N \N \N \N \N \N \N \N \N \N \N 135 2018-09-05 14:40:14 bwa_samse \N \N \N \N \N \N \N \N \N \N \N 44 2010-06-02 09:58:38 SWEmbl_DNase \N \N \N SWEmbl \N SWEmbl -f 150 -R 0.0025 -d 150 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 46 2010-08-13 00:00:00 SWEmbl_R0025 \N \N 3.3 SWEmbl 2008-08-03 SWEmbl -f 150 -R 0.0025 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 47 2010-08-13 00:00:00 SWEmbl_R015 \N \N 3.3 SWEmbl 2008-08-03 SWEmbl -f 150 -R 0.015 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 48 2011-11-09 17:00:00 Manual_Antibody-Gene_Annotation \N \N \N \N \N \N \N \N \N \N \N 51 2011-04-07 00:00:00 ccat_histone \N \N \N CCAT 3.0 CCAT fragmentSize 200 slidingWinSize 150 movingStep 20 isStrandSensitiveMode 0 minCount 10 outputNum 100000 randomSeed 123456 minScore 4.0 bootstrapPass 50 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::CCAT \N \N \N 52 0000-00-00 00:00:00 comb11.concord4 \N \N \N \N \N \N \N \N \N \N \N 61 2013-10-30 13:21:36 ChIP-Seq \N \N \N \N \N \N \N \N \N \N \N 62 2013-10-30 13:21:36 DNase-Seq \N \N \N \N \N \N \N \N \N \N \N 64 2013-10-30 13:21:36 FAIRE \N \N \N \N \N \N \N \N \N \N \N 68 2014-04-25 16:05:23 SWEmbl_R0005 \N \N \N SWEmbl 3.5 SWEmbl -f 150 -R 0.0005 -d 150 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 69 2014-05-27 11:10:56 SWEmbl_R0005_IDR \N \N \N SWEmbl 3.5 SWEmbl -f 150 -R 0.0005 -d 150 Bio::EnsEMBL::Funcgen::Sequencing::PeakCaller::SWEmbl \N \N \N 70 2014-06-18 13:45:40 JASPAR_v5_0 \N 5.0 \N \N \N \N \N \N \N \N \N 71 2014-06-23 13:38:06 FANTOM_v5 \N 5 \N \N \N \N \N \N \N \N \N 90 0000-00-00 00:00:00 WGBS_FDR_1e-4 \N \N \N \N \N \N \N \N \N \N \N 91 0000-00-00 00:00:00 RRBS_FDR_1e-4 \N \N \N \N \N \N \N \N \N \N \N 112 2016-05-26 12:51:44 ChIP-Seq_control_hist \N \N \N \N \N \N \N \N \N \N \N 113 2016-05-26 12:52:28 ChIP-Seq_control_TF \N \N \N \N \N \N \N \N \N \N \N 114 2016-05-27 15:31:46 ChIP-Seq_control_dnase \N \N \N \N \N \N \N \N \N \N \N 115 2016-06-04 09:27:30 flagstats \N \N \N samtools \N \N -q 1 -F 4 \N \N \N \N 116 2016-06-04 09:37:47 phantom peak quality tools \N \N \N run_spp.R \N \N \N \N \N \N \N 117 2016-06-04 13:49:31 QC Chance \N \N \N argenrich.R \N \N \N \N \N \N \N 118 2016-06-04 13:58:01 Proportion of reads in peaks \N \N \N proportion_of_reads_in_peaks.pl \N \N \N \N \N \N \N 119 2016-06-21 14:15:38 Crispr \N \N \N \N \N \N \N \N \N \N \N 120 2016-06-21 18:06:58 Segmentation \N \N \N \N \N \N \N \N \N \N \N 136 2018-09-05 14:40:14 bwa_sampe \N \N \N \N \N \N \N \N \N \N \N 137 2018-09-05 14:40:15 bwa_hodgepodge \N \N \N \N \N \N \N \N \N \N \N 165 \N DNase1 \N \N \N \N \N \N \N \N \N \N \N 166 \N ATAC-Seq \N \N \N \N \N \N \N \N \N \N \N