24	BWA alignments of gonad 1 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	gonad 1 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "gonad 1"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
27	Spliced-read support for gonad 1	gonad 1 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "gonad 1"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
25	Annotation generated FROM gonad 1 RNA-seq data	gonad 1 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "gonad 1"}, "type": "rnaseq", "zmenu": "RNASeq"}
26	Spliced-read support for gonad 1	gonad 1 intron-spanning reads	1	\N
16	BWA alignments of gonad 2 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	gonad 2 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "gonad 2"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
19	Spliced-read support for gonad 2	gonad 2 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "gonad 2"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
17	Annotation generated FROM gonad 2 RNA-seq data	gonad 2 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "gonad 2"}, "type": "rnaseq", "zmenu": "RNASeq"}
18	Spliced-read support for gonad 2	gonad 2 intron-spanning reads	1	\N
40	BWA alignments of gonad 3 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	gonad 3 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "gonad 3"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
43	Spliced-read support for gonad 3	gonad 3 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "gonad 3"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
41	Annotation generated FROM gonad 3 RNA-seq data	gonad 3 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "gonad 3"}, "type": "rnaseq", "zmenu": "RNASeq"}
42	Spliced-read support for gonad 3	gonad 3 intron-spanning reads	1	\N
36	BWA alignments of gonad 4 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	gonad 4 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "gonad 4"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
39	Spliced-read support for gonad 4	gonad 4 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "gonad 4"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
37	Annotation generated FROM gonad 4 RNA-seq data	gonad 4 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "gonad 4"}, "type": "rnaseq", "zmenu": "RNASeq"}
38	Spliced-read support for gonad 4	gonad 4 intron-spanning reads	1	\N
52	BWA alignments of merged RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	merged RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
55	Spliced-read support for merged	merged intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
54	Annotation generated FROM merged RNA-seq data	merged RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "merged"}, "type": "rnaseq", "zmenu": "RNASeq"}
56	Spliced-read support for merged	merged intron-spanning reads	1	\N
12	BWA alignments of skeletal muscle female 1 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	skeletal muscle female 1 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "skeletal muscle female 1"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
15	Spliced-read support for skeletal muscle female 1	skeletal muscle female 1 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle female 1"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
13	Annotation generated FROM skeletal muscle female 1 RNA-seq data	skeletal muscle female 1 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle female 1"}, "type": "rnaseq", "zmenu": "RNASeq"}
14	Spliced-read support for skeletal muscle female 1	skeletal muscle female 1 intron-spanning reads	1	\N
48	BWA alignments of skeletal muscle female 2 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	skeletal muscle female 2 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "skeletal muscle female 2"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
51	Spliced-read support for skeletal muscle female 2	skeletal muscle female 2 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle female 2"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
49	Annotation generated FROM skeletal muscle female 2 RNA-seq data	skeletal muscle female 2 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle female 2"}, "type": "rnaseq", "zmenu": "RNASeq"}
50	Spliced-read support for skeletal muscle female 2	skeletal muscle female 2 intron-spanning reads	1	\N
20	BWA alignments of skeletal muscle female 3 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	skeletal muscle female 3 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "skeletal muscle female 3"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
23	Spliced-read support for skeletal muscle female 3	skeletal muscle female 3 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle female 3"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
21	Annotation generated FROM skeletal muscle female 3 RNA-seq data	skeletal muscle female 3 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle female 3"}, "type": "rnaseq", "zmenu": "RNASeq"}
22	Spliced-read support for skeletal muscle female 3	skeletal muscle female 3 intron-spanning reads	1	\N
28	BWA alignments of skeletal muscle male 1 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	skeletal muscle male 1 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "skeletal muscle male 1"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
31	Spliced-read support for skeletal muscle male 1	skeletal muscle male 1 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle male 1"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
29	Annotation generated FROM skeletal muscle male 1 RNA-seq data	skeletal muscle male 1 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle male 1"}, "type": "rnaseq", "zmenu": "RNASeq"}
30	Spliced-read support for skeletal muscle male 1	skeletal muscle male 1 intron-spanning reads	1	\N
32	BWA alignments of skeletal muscle male 2 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	skeletal muscle male 2 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "skeletal muscle male 2"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
33	Spliced-read support for skeletal muscle male 2	skeletal muscle male 2 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle male 2"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
34	Annotation generated FROM skeletal muscle male 2 RNA-seq data	skeletal muscle male 2 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle male 2"}, "type": "rnaseq", "zmenu": "RNASeq"}
35	Spliced-read support for skeletal muscle male 2	skeletal muscle male 2 intron-spanning reads	1	\N
44	BWA alignments of skeletal muscle male 3 RNA-seq data. This BAM file can be downloaded FROM the <a href="http://ftp.ensembl.org/pub/data_files/">Ensembl FTP site</a>	skeletal muscle male 3 RNA-seq BWA alignments	1	{"colour_key": "bam", "label_key": "RNASeq [biotype]", "matrix": {"column": "BAM files", "group": "ENA", "group_order": "1", "menu": "rnaseq", "row": "skeletal muscle male 3"}, "type": "rnaseq", "zmenu": "RNASeq_bam"}
47	Spliced-read support for skeletal muscle male 3	skeletal muscle male 3 intron-spanning reads	1	{"additional_renderers": ["histogram", "Variable height"], "colour_key": "intron_support", "matrix": {"column": "Intron-spanning reads", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle male 3"}, "type": "rnaseq", "zmenu": "Supporting_alignment"}
45	Annotation generated FROM skeletal muscle male 3 RNA-seq data	skeletal muscle male 3 RNA-seq gene models	1	{"colour_key": "human_rnaseq", "label_key": "RNASeq [biotype]", "matrix": {"column": "Gene models", "group": "ENA", "menu": "rnaseq", "row": "skeletal muscle male 3"}, "type": "rnaseq", "zmenu": "RNASeq"}
46	Spliced-read support for skeletal muscle male 3	skeletal muscle male 3 intron-spanning reads	1	\N
57	For various species, proteins from <a rel="external" href="http://www.uniprot.org/">UniProtKB</a> are aligned to the genome with <a rel="external" href="http://genome.cshlp.org/content/14/5/988.abstract?maxtoshow=&amp%3bHITS=10&amp%3bhits=10&amp%3bRESULTFORMAT=&amp%3bandorexactfulltext=and&amp%3bsearchid=1&amp%3bFIRSTINDEX=0&amp%3bsortspec=relevance&amp%3bvolume=14&amp%3bfirstpage=988&amp%3bresourcetype=HWCIT">GeneWise</a>.	Other species proteins	1	{"protein_align_feature": {"do_not_display": "1"}}