1 2019-05-02 20:04:07 repeatmask_repbase_teleost \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker -nolow -species "vertebrates" -engine "crossmatch" HiveRepeatMasker \N \N \N 2 2019-05-03 04:56:29 dust \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/dustmasker \N HiveDust \N \N \N 3 2019-05-03 04:57:15 trf \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/trf \N HiveTRF \N \N \N 4 2019-05-03 05:09:01 eponine \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/java -epojar => /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/opt/eponine/libexec/eponine-scan.jar, -threshold => 0.999 HiveEponine \N \N \N 5 2019-05-03 05:09:07 cpg \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cpg_lh \N HiveCPG \N \N \N 6 2019-05-03 05:10:15 trnascan \N \N \N \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tRNAscan-SE \N HiveTRNAScan \N \N \N 7 2019-05-03 05:21:18 genscan HumanIso.smat \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/share/HumanIso.smat \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/genscan \N HiveGenscan \N \N \N 8 2019-05-28 11:49:10 ncrna \N \N /hps/nobackup2/production/ensembl/genebuild/production/fish/erpetoichthys_calabaricus/GCA_900747795.2//Rfam.cm \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N /hps/nobackup2/production/ensembl/genebu 9 2019-05-29 02:13:03 ensembl \N \N \N \N \N \N \N \N \N \N \N 24 \N rfamcmsearch \N 14.0 /hps/nobackup2/production/ensembl/genebuild/production/fish/astyanax_mexicanus/ \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N \N 23 \N rnaseq_intron_support \N \N \N \N \N \N \N \N \N \N \N 19 2019-05-28 11:01:02 blastmirna \N \N /hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/mirbase_22/all_mirnas.fa \N \N /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn -num_threads 3 HiveBlastmiRNA \N \N \N 21 2019-05-31 14:40:25 other_protein uniprot \N \N \N \N \N \N \N \N \N \N 25 2019-07-04 22:29:57 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 26 2019-07-04 22:29:57 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 27 2019-07-04 22:33:58 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 28 2020-09-28 00:00:00 longnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 29 2020-09-28 00:00:00 pseudogenedensity \N \N \N \N \N \N \N \N \N \N \N 30 2020-09-28 00:00:00 percentagerepeat \N \N \N \N \N \N \N \N \N \N \N 31 2020-09-28 00:00:00 codingdensity \N \N \N \N \N \N \N \N \N \N \N 32 2020-09-28 00:00:00 shortnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 33 2020-09-28 00:00:00 percentgc \N \N \N \N \N \N \N \N \N \N \N 241 2023-01-25 12:47:51 cdd CDD 3.20 \N InterProScan 5.60-92.0 \N \N \N \N \N \N 210 2021-07-13 16:40:33 gene3d Gene3D 4.3.0 \N InterProScan 5.52-86.0 \N \N \N \N \N \N 275 2024-06-17 05:29:24 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 274 2024-06-17 05:28:47 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 279 2024-06-17 05:32:49 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 192 2021-01-10 19:25:54 pirsf PIRSF 3.10 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 277 2024-06-17 05:31:50 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 190 2021-01-10 19:24:33 prints PRINTS 42.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 278 2024-06-17 05:31:58 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 255 2023-06-17 22:46:34 smart Smart 9.0 \N InterProScan 5.62-94.0 \N \N \N \N \N \N 194 2021-01-10 19:26:15 sfld SFLD 4 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 196 2021-01-10 19:28:07 superfamily SuperFamily 1.75 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 197 2021-01-10 19:28:41 tigrfam TIGRfam 15.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 198 2021-01-10 19:29:35 mobidblite MobiDBLite 2.0 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 199 2021-01-10 19:30:15 ncoils ncoils 2.2.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 202 2021-01-10 19:33:13 tmhmm TMHMM 2.0c \N InterProScan 5.48-83.0 \N \N \N \N \N \N 201 2021-01-10 19:31:12 seg Seg \N \N seg \N \N \N \N \N \N \N 200 2021-01-10 19:30:41 signalp SignalP 4.1 \N InterProScan 5.48-83.0 \N \N \N \N \N \N 280 2024-06-17 05:33:23 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 281 2024-07-22 10:08:10 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 284 2024-07-25 12:55:53 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 282 2024-07-25 06:37:41 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N 276 2024-06-17 05:31:17 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N