1	2020-09-03 15:40:41	repeatmask_repbase_teleost	\N	\N	\N	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker	-nolow -species "Teleostei" -engine "crossmatch"	HiveRepeatMasker	\N	\N	\N
2	2020-09-03 17:07:56	repeatmask_repeatmodeler	\N	\N	\N	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/RepeatMasker	-nolow -lib "/hps/nobackup2/production/ensembl/genebuild/custom_repeat_libraries/repeatmodeler/species/denticeps_clupeoides/denticeps_clupeoides.repeatmodeler.fa" -engine "crossmatch"	HiveRepeatMasker	\N	\N	\N
3	2020-09-03 19:43:41	dust	\N	\N	\N	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/dustmasker	\N	HiveDust	\N	\N	\N
4	2020-09-03 19:47:29	trf	\N	\N	\N	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/trf	\N	HiveTRF	\N	\N	\N
5	2020-09-03 19:50:57	eponine	\N	\N	\N	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/java	-epojar => /nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/opt/eponine/libexec/eponine-scan.jar, -threshold => 0.999	HiveEponine	\N	\N	\N
6	2020-09-03 19:51:56	cpg	\N	\N	\N	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cpg_lh	\N	HiveCPG	\N	\N	\N
7	2020-09-03 19:53:37	trnascan	\N	\N	\N	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/tRNAscan-SE	\N	HiveTRNAScan	\N	\N	\N
8	2020-09-03 19:58:11	genscan	HumanIso.smat	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/share/HumanIso.smat	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/genscan	\N	HiveGenscan	\N	\N	\N
9	2020-09-10 13:08:47	ensembl	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
23	\N	rfamcmsearch	\N	14.0	/hps/nobackup2/production/ensembl/genebuild/production/fish//denticeps_clupeoides/GCA_900700375.2/	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch	\N	HiveCMSearch	\N	\N	\N
16	2020-09-04 11:02:15	ncrna	\N	\N	/hps/nobackup2/production/ensembl/genebuild/production/fish//denticeps_clupeoides/GCA_900700375.2//Rfam.cm	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/cmsearch	\N	HiveCMSearch	\N	\N	/hps/nobackup2/production/ensembl/genebu
19	2020-09-04 11:05:32	blastmirna	\N	\N	/hps/nobackup2/production/ensembl/genebuild/blastdb/ncrna/mirbase_22/all_mirnas.fa	\N	\N	/nfs/software/ensembl/RHEL7-JUL2017-core2/linuxbrew/bin/blastn	 -num_threads 3 	HiveBlastmiRNA	\N	\N	\N
21	2020-09-11 06:31:48	other_protein	uniprot	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
22	2020-09-11 06:31:48	projected_transcript	homo_sapiens_core_100_38	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
24	2020-09-11 06:32:24	cdna_alignment_core	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
25	2020-09-11 06:53:43	rnaseq_intron_support	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
26	2020-11-12 00:00:00	percentagerepeat	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
27	2020-11-12 00:00:00	codingdensity	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
28	2020-11-12 00:00:00	percentgc	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
29	2020-11-12 00:00:00	shortnoncodingdensity	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
30	2020-11-12 00:00:00	pseudogenedensity	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
31	2020-11-12 00:00:00	longnoncodingdensity	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
121	2023-11-02 09:03:25	cdd	CDD	3.20	\N	InterProScan	5.64-96.0	\N	\N	\N	\N	\N	\N
123	2023-11-02 09:03:57	gene3d	Gene3D	4.3.0	\N	InterProScan	5.64-96.0	\N	\N	\N	\N	\N	\N
141	2024-06-17 11:01:50	hmmpanther	PANTHER	18.0	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
138	2024-06-17 10:58:50	pfam	Pfam	37.0	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
77	2020-10-29 09:54:00	pirsf	PIRSF	3.10	\N	InterProScan	5.46-81.0	\N	\N	\N	\N	\N	\N
140	2024-06-17 11:00:07	hamap	HAMAP	2023_05	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
80	2020-10-29 09:56:25	prints	PRINTS	42.0	\N	InterProScan	5.46-81.0	\N	\N	\N	\N	\N	\N
139	2024-06-17 10:59:44	pfscan	Prosite_profiles	2023_05	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
144	2024-06-17 11:35:38	scanprosite	Prosite_patterns	2023_05	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
83	2020-10-29 09:57:37	sfld	SFLD	4	\N	InterProScan	5.46-81.0	\N	\N	\N	\N	\N	\N
127	2023-11-02 09:04:40	smart	Smart	9.0	\N	InterProScan	5.64-96.0	\N	\N	\N	\N	\N	\N
84	2020-10-29 09:58:21	superfamily	SuperFamily	1.75	\N	InterProScan	5.46-81.0	\N	\N	\N	\N	\N	\N
85	2020-10-29 09:59:07	mobidblite	MobiDBLite	2.0	\N	InterProScan	5.46-81.0	\N	\N	\N	\N	\N	\N
87	2020-10-29 09:59:25	ncoils	ncoils	2.2.1	\N	InterProScan	5.46-81.0	\N	\N	\N	\N	\N	\N
86	2020-10-29 09:59:11	tigrfam	TIGRfam	15.0	\N	InterProScan	5.46-81.0	\N	\N	\N	\N	\N	\N
90	2020-10-29 10:00:58	seg	Seg	\N	\N	seg	\N	\N	\N	\N	\N	\N	\N
88	2020-10-29 09:59:29	signalp	SignalP	4.1	\N	InterProScan	5.46-81.0	\N	\N	\N	\N	\N	\N
142	2024-06-17 11:02:14	interpro2go	InterPro2GO	2024-05-29	\N	interpro2go	\N	\N	\N	\N	\N	\N	\N
89	2020-10-29 09:59:54	tmhmm	TMHMM	2.0c	\N	InterProScan	5.46-81.0	\N	\N	\N	\N	\N	\N
145	2024-07-22 10:08:12	goa_import	GO	\N	\N	goa_import	\N	\N	\N	\N	\N	\N	\N
110	2021-03-22 10:17:06	rnacentral_checksum	RNACentral	2021-03-02	\N	rnacentral_checksum	\N	\N	\N	\N	\N	\N	\N
112	2021-04-02 12:03:18	uniparc_checksum	UniParc	2021-02-17	\N	uniparc_checksum	\N	\N	\N	\N	\N	\N	\N
113	2021-04-15 17:36:40	uniprot_checksum	UniProt	2021-04-08	\N	uniprot_checksum	\N	\N	\N	\N	\N	\N	\N
118	2022-12-05 20:12:09	gene_symbol_classifier	\N	\N	\N	\N	0.12.1	\N	\N	\N	\N	\N	\N
143	2024-06-17 11:06:57	ncbifam	NCBIfam	14.0	\N	InterProScan	5.68-100.0	\N	\N	\N	\N	\N	\N
129	2023-11-24 07:58:15	xrefexoneratedna	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
130	2023-11-24 07:58:15	xrefexonerateprotein	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
131	2023-11-24 15:48:10	xrefchecksum	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
148	2024-07-25 12:55:53	xref_projection	\N	\N	\N	xref_projection	\N	\N	\N	\N	\N	\N	\N
146	2024-07-25 11:02:42	alphafold	alphafold	4	/hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv	\N	\N	\N	\N	\N	\N	\N	\N