1 2022-01-24 15:02:01 repeatdetector \N \N \N repeatdetector 05/22/2015 /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/Red \N \N \N \N \N 2 2022-01-24 16:03:32 repeatmask_repeatmodeler \N \N \N \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/RepeatMasker -nolow -lib "/hps/nobackup/flicek/ensembl/genebuild/custom_repeat_libraries/repeatmodeler/species/anabas_testudineus/anabas_testudineus.repeatmodeler.fa" -engine "crossmatch" HiveRepeatMasker \N \N \N 3 2022-01-24 18:05:34 repeatmask_repbase_teleost \N \N \N \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/RepeatMasker -nolow -species "Teleostei" -engine "crossmatch" HiveRepeatMasker \N \N \N 4 2022-01-31 13:56:47 dust \N \N \N \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/dustmasker \N HiveDust \N \N \N 5 2022-01-31 13:57:26 trf \N \N \N \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/trf \N HiveTRF \N \N \N 6 2022-04-07 13:05:26 ensembl \N \N \N \N \N \N \N \N \N \N \N 39 2022-11-30 12:02:46 tmhmm TMHMM 2.0c \N InterProScan 5.59-91.0 \N \N \N \N \N \N 79 2024-06-17 03:29:32 interpro2go InterPro2GO 2024-05-29 \N interpro2go \N \N \N \N \N \N \N 31 2022-11-29 11:29:14 longnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 32 2022-11-29 11:29:43 percentagerepeat \N \N \N \N \N \N \N \N \N \N \N 74 2024-06-17 03:28:04 hmmpanther PANTHER 18.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 34 2022-11-30 12:02:46 gene3d Gene3D 4.3.0 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 35 2022-11-30 12:02:46 prints PRINTS 42.0 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 36 2022-11-30 12:02:46 mobidblite MobiDBLite 2.0 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 37 2022-11-30 12:02:46 sfld SFLD 4 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 76 2024-06-17 03:28:14 scanprosite Prosite_patterns 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 12 2022-03-04 16:04:20 ncrna \N \N /hps/nobackup/flicek/ensembl/genebuild/ereboperezsilva/anabas_testudinerus_annotation/anabas_testudineus/GCA_900324465.3 \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/cmsearch \N HiveCMSearch \N \N /hps/nobackup/flicek/ensembl/genebuild/b 27 2022-11-29 11:24:46 percentgc \N \N \N \N \N \N \N \N \N \N \N 28 2022-11-29 11:29:04 pseudogenedensity \N \N \N \N \N \N \N \N \N \N \N 29 2022-11-29 11:29:04 codingdensity \N \N \N \N \N \N \N \N \N \N \N 30 2022-11-29 11:29:13 shortnoncodingdensity \N \N \N \N \N \N \N \N \N \N \N 15 2022-03-04 16:06:38 blastmirna \N \N /hps/nobackup/flicek/ensembl/genebuild/blastdb/ncrna/mirbase_22/all_mirnas.fa \N \N /hps/software/users/ensembl/ensw/C8-MAR21-sandybridge/linuxbrew/bin/blastn -num_threads 3 HiveBlastmiRNA \N \N \N 43 2022-11-30 12:02:46 ncoils ncoils 2.2.1 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 61 2023-11-02 09:06:03 smart Smart 9.0 \N InterProScan 5.64-96.0 \N \N \N \N \N \N 77 2024-06-17 03:28:47 pfscan Prosite_profiles 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 22 2022-05-23 12:53:16 rnaseq_intron_support \N \N \N \N \N \N \N \N \N \N \N 23 2022-05-23 12:53:16 cdna_alignment_core \N \N \N \N \N \N \N \N \N \N \N 24 2022-05-23 12:53:16 other_protein uniprot \N \N \N \N \N \N \N \N \N \N 25 2022-05-23 12:53:16 projected_transcript danio_rerio_core_106_11 \N \N \N \N \N \N \N \N \N \N 26 \N rfamcmsearch \N 14.0 /hps/nobackup/flicek/ensembl/genebuild/ereboperezsilva/anabas_testudinerus_annotation/anabas_testudineus/GCA_900324465.3 \N \N cmsearch \N HiveCMSearch \N \N \N 44 2022-11-30 12:02:46 pirsf PIRSF 3.10 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 46 2022-11-30 12:02:46 uniprot_checksum UniProt 2022-10-12 \N uniprot_checksum \N \N \N \N \N \N \N 47 2022-11-30 12:02:46 superfamily SuperFamily 1.75 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 57 2023-11-02 09:04:51 cdd CDD 3.20 \N InterProScan 5.64-96.0 \N \N \N \N \N \N 49 2022-11-30 12:02:46 uniparc_checksum UniParc 2022-08-15 \N uniparc_checksum \N \N \N \N \N \N \N 50 2022-11-30 12:02:46 signalp SignalP 4.1 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 51 2022-11-30 12:02:46 tigrfam TIGRfam 15.0 \N InterProScan 5.59-91.0 \N \N \N \N \N \N 75 2024-06-17 03:28:11 pfam Pfam 37.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 53 2022-11-30 12:02:46 seg Seg \N \N seg \N \N \N \N \N \N \N 54 2022-12-01 14:55:26 rnacentral_checksum RNACentral 2022-10-14 \N rnacentral_checksum \N \N \N \N \N \N \N 55 2022-12-05 15:04:40 gene_symbol_classifier \N \N \N \N 0.12.1 \N \N \N \N \N \N 80 2024-07-22 10:08:16 goa_import GO \N \N goa_import \N \N \N \N \N \N \N 78 2024-06-17 03:28:48 ncbifam NCBIfam 14.0 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 73 2024-06-17 03:27:36 hamap HAMAP 2023_05 \N InterProScan 5.68-100.0 \N \N \N \N \N \N 65 2023-11-23 11:14:48 xrefexoneratedna \N \N \N \N \N \N \N \N \N \N \N 66 2023-11-23 11:14:48 xrefexonerateprotein \N \N \N \N \N \N \N \N \N \N \N 67 2023-11-23 11:18:05 xrefchecksum \N \N \N \N \N \N \N \N \N \N \N 83 2024-07-25 12:55:53 xref_projection \N \N \N xref_projection \N \N \N \N \N \N \N 81 2024-07-25 12:13:30 alphafold alphafold 4 /hps/scratch/flicek/ensembl/production/ensprod/alphafold_vertebrates/accession_ids.csv \N \N \N \N \N \N \N \N