## taxon_id STRING_type STRING_name_compact official_name_NCBI 287 core Pseudomonas aeruginosa Pseudomonas aeruginosa 292 core Burkholderia cepacia Burkholderia cepacia 301 core Pseudomonas oleovorans Pseudomonas oleovorans 340 core Xanthomonas campestris campestris Xanthomonas campestris pv. campestris 359 core Agrobacterium rhizogenes Agrobacterium rhizogenes 394 core Sinorhizobium fredii NGR234 Sinorhizobium fredii NGR234 470 core Acinetobacter baumannii Acinetobacter baumannii 511 core Alcaligenes faecalis Alcaligenes faecalis 549 core Pantoea agglomerans Pantoea agglomerans 571 periphery Klebsiella oxytoca Klebsiella oxytoca 573 core Klebsiella pneumoniae Klebsiella pneumoniae 585 core Proteus vulgaris Proteus vulgaris 633 core Yersinia pseudotuberculosis Yersinia pseudotuberculosis 672 core Vibrio vulnificus Vibrio vulnificus 747 core Pasteurella multocida Pasteurella multocida 758 periphery Pasteurella pneumotropica Pasteurella pneumotropica 813 core Chlamydia trachomatis Chlamydia trachomatis 827 periphery Campylobacter ureolyticus Campylobacter ureolyticus 882 core Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris str. Hildenborough 883 periphery Desulfovibrio vulgaris Miyazaki Desulfovibrio vulgaris str. 'Miyazaki F' 991 core Flavobacterium hydatis Flavobacterium hydatis 1044 periphery Erythrobacter longus Erythrobacter longus 1140 core Synechococcus elongatus PCC7942 Synechococcus elongatus PCC7942 1147 periphery Synechocystis sp. PCC6714 Synechocystis sp. PCC6714 1148 core Synechocystis sp. PCC6803 Synechocystis sp. PCC6803 1246 core Leuconostoc lactis Leuconostoc lactis 1274 core Dermacoccus nishinomiyaensis Dermacoccus nishinomiyaensis 1280 core Staphylococcus aureus Staphylococcus aureus 1288 core Staphylococcus xylosus Staphylococcus xylosus 1314 core Streptococcus pyogenes Streptococcus pyogenes 1346 periphery Streptococcus iniae Streptococcus iniae 1396 core Bacillus cereus Bacillus cereus 1405 periphery Bacillus mycoides Bacillus mycoides 1507 periphery Clostridium sp. ATCC29733 Clostridium sp. ATCC29733 1511 periphery Clostridium sticklandii [Clostridium] sticklandii 1605 core Lactobacillus animalis Lactobacillus animalis 1680 core Bifidobacterium adolescentis Bifidobacterium adolescentis 1687 periphery Bifidobacterium coryneforme Bifidobacterium coryneforme 1688 periphery Bifidobacterium cuniculi Bifidobacterium cuniculi 1690 periphery Bifidobacterium pseudolongum globosum Bifidobacterium pseudolongum subsp. globosum 1692 periphery Bifidobacterium magnum Bifidobacterium magnum 1693 periphery Bifidobacterium minimum Bifidobacterium minimum 1713 core Oerskovia turbata Oerskovia turbata 1719 core Corynebacterium pseudotuberculosis Corynebacterium pseudotuberculosis 1828 periphery Rhodococcus fascians Rhodococcus fascians 1869 periphery Actinoplanes utahensis Actinoplanes utahensis 1894 core Streptomyces aureofaciens Streptomyces aureofaciens 1896 periphery Streptomyces bikiniensis Streptomyces bikiniensis 1906 core Streptomyces fradiae Streptomyces fradiae 1907 periphery Streptomyces glaucescens Streptomyces glaucescens 1944 periphery Streptomyces halstedii Streptomyces halstedii 1957 periphery Streptomyces sclerotialus Streptomyces sclerotialus 1961 periphery Streptomyces virginiae Streptomyces virginiae 1968 periphery Streptomyces cellulosae Streptomyces cellulosae 1996 periphery Microtetraspora glauca Microtetraspora glauca 2002 periphery Streptosporangium amethystogenes Streptosporangium amethystogenes 2045 core Pimelobacter simplex Pimelobacter simplex 2055 core Gordonia terrae Gordonia terrae 2074 periphery Pseudonocardia autotrophica Pseudonocardia autotrophica 2110 core Mycoplasma agalactiae Mycoplasma agalactiae 2113 core Mycoplasma californicum Mycoplasma californicum 2325 core Thermoanaerobacter kivui Thermoanaerobacter kivui 2340 core Solemya velum Solemya velum gill symbiont 2342 periphery Sodalis pierantonius Candidatus Sodalis pierantonius str. SOPE 2423 core Fervidobacterium islandicum Fervidobacterium islandicum 2711 periphery Citrus sinensis Citrus sinensis 2754 periphery Synergistes jonesii Synergistes jonesii 2850 core Phaeodactylum tricornutum Phaeodactylum tricornutum 2880 core Ectocarpus siliculosus Ectocarpus siliculosus 2903 core Emiliania huxleyi Emiliania huxleyi 3055 core Chlamydomonas reinhardtii Chlamydomonas reinhardtii 3067 periphery Volvox carteri Volvox carteri 3075 periphery Auxenochlorella protothecoides Auxenochlorella protothecoides 3218 core Physcomitrella patens Physcomitrella patens 3641 core Theobroma cacao Theobroma cacao 3649 periphery Carica papaya Carica papaya 3656 core Cucumis melo Cucumis melo 3659 periphery Cucumis sativus Cucumis sativus 3694 core Populus trichocarpa Populus trichocarpa 3702 core Arabidopsis thaliana Arabidopsis thaliana 3711 core Brassica rapa Brassica rapa 3712 periphery Brassica oleracea Brassica oleracea 3750 core Malus domestica Malus domestica 3760 periphery Prunus persica Prunus persica 3827 periphery Cicer arietinum Cicer arietinum 3847 core Glycine max Glycine max 3880 periphery Medicago truncatula Medicago truncatula 3885 core Phaseolus vulgaris Phaseolus vulgaris 3983 core Manihot esculenta Manihot esculenta 3988 periphery Ricinus communis Ricinus communis 4006 periphery Linum usitatissimum Linum usitatissimum 4081 core Solanum lycopersicum Solanum lycopersicum 4096 periphery Nicotiana sylvestris Nicotiana sylvestris 4098 periphery Nicotiana tomentosiformis Nicotiana tomentosiformis 4113 core Solanum tuberosum Solanum tuberosum 4155 core Erythranthe guttata Erythranthe guttata 4432 core Nelumbo nucifera Nelumbo nucifera 4513 core Hordeum vulgare Hordeum vulgare 4529 periphery Oryza rufipogon Oryza rufipogon 4530 core Oryza sativa Oryza sativa 4533 periphery Oryza brachyantha Oryza brachyantha 4536 periphery Oryza nivara Oryza nivara 4537 periphery Oryza punctata Oryza punctata 4538 periphery Oryza glaberrima Oryza glaberrima 4555 core Setaria italica Setaria italica 4558 periphery Sorghum bicolor Sorghum bicolor 4565 periphery Triticum aestivum Triticum aestivum 4572 periphery Triticum urartu Triticum urartu 4577 core Zea mays Zea mays 4641 core Musa acuminata Musa acuminata 4787 core Phytophthora infestans Phytophthora infestans 4792 periphery Phytophthora parasitica Phytophthora parasitica 4896 core Schizosaccharomyces pombe Schizosaccharomyces pombe 4897 periphery Schizosaccharomyces japonicus Schizosaccharomyces japonicus 4899 core Schizosaccharomyces octosporus Schizosaccharomyces octosporus 4909 periphery Pichia kudriavzevii Pichia kudriavzevii 4920 periphery Millerozyma farinosa Millerozyma farinosa 4922 core Komagataella pastoris Komagataella pastoris 4924 core Scheffersomyces stipitis Scheffersomyces stipitis 4929 periphery Meyerozyma guilliermondii Meyerozyma guilliermondii 4932 core Saccharomyces cerevisiae Saccharomyces cerevisiae 4950 core Torulaspora delbrueckii Torulaspora delbrueckii 4952 core Yarrowia lipolytica Yarrowia lipolytica 4956 core Zygosaccharomyces rouxii Zygosaccharomyces rouxii 4959 periphery Debaryomyces hansenii Debaryomyces hansenii 5011 core Taphrina deformans Taphrina deformans 5016 periphery Bipolaris maydis Bipolaris maydis 5017 periphery Bipolaris zeicola Bipolaris zeicola 5022 core Leptosphaeria maculans Leptosphaeria maculans 5037 periphery Histoplasma capsulatum Histoplasma capsulatum 5039 periphery Blastomyces dermatitidis Blastomyces dermatitidis 5057 periphery Aspergillus clavatus Aspergillus clavatus 5059 periphery Aspergillus flavus Aspergillus flavus 5061 core Aspergillus niger Aspergillus niger 5062 periphery Aspergillus oryzae Aspergillus oryzae 5111 periphery Claviceps purpurea Claviceps purpurea 5127 periphery Fusarium fujikuroi Fusarium fujikuroi 5141 core Neurospora crassa Neurospora crassa 5145 periphery Podospora anserina Podospora anserina 5147 periphery Sordaria macrospora Sordaria macrospora 5180 periphery Sclerotinia sclerotiorum Sclerotinia sclerotiorum 5207 periphery Cryptococcus neoformans Cryptococcus neoformans 5217 core Tremella mesenterica Tremella mesenterica 5270 core Ustilago maydis Ustilago maydis 5286 core Rhodosporidium toruloides Rhodosporidium toruloides 5297 core Puccinia graminis Puccinia graminis 5334 periphery Schizophyllum commune Schizophyllum commune 5341 core Agaricus bisporus Agaricus bisporus 5346 core Coprinopsis cinerea Coprinopsis cinerea 5465 periphery Colletotrichum orbiculare Colletotrichum orbiculare 5476 core Candida albicans Candida albicans 5478 core Candida glabrata Candida glabrata 5479 periphery Candida maltosa Candida maltosa 5480 periphery Candida parapsilosis Candida parapsilosis 5482 periphery Candida tropicalis Candida tropicalis 5501 periphery Coccidioides immitis Coccidioides immitis 5507 periphery Fusarium oxysporum Fusarium oxysporum 5518 core Fusarium graminearum Fusarium graminearum 5551 periphery Trichophyton rubrum Trichophyton rubrum 5664 core Leishmania major Leishmania major 5671 periphery Leishmania infantum Leishmania infantum 5679 core Leishmania panamensis Leishmania panamensis 5691 periphery Trypanosoma brucei Trypanosoma brucei 5693 core Trypanosoma cruzi Trypanosoma cruzi 5722 core Trichomonas vaginalis Trichomonas vaginalis 5741 core Giardia intestinalis Giardia intestinalis 5759 core Entamoeba histolytica Entamoeba histolytica 5762 core Naegleria gruberi Naegleria gruberi 5786 periphery Dictyostelium purpureum Dictyostelium purpureum 5808 core Cryptosporidium muris Cryptosporidium muris 5811 core Toxoplasma gondii Toxoplasma gondii 5821 periphery Plasmodium berghei Plasmodium berghei 5825 core Plasmodium chabaudi Plasmodium chabaudi 5827 periphery Plasmodium cynomolgi Plasmodium cynomolgi 5833 core Plasmodium falciparum Plasmodium falciparum 5850 periphery Plasmodium knowlesi Plasmodium knowlesi 5855 periphery Plasmodium vivax Plasmodium vivax 5860 periphery Plasmodium vinckei Plasmodium vinckei 5865 periphery Babesia bovis Babesia bovis 5872 core Babesia equi Babesia equi 5874 periphery Theileria annulata Theileria annulata 5875 periphery Theileria parva Theileria parva 5888 core Paramecium tetraurelia Paramecium tetraurelia 5911 periphery Tetrahymena thermophila Tetrahymena thermophila 5932 core Ichthyophthirius multifiliis Ichthyophthirius multifiliis 5970 periphery Exophiala dermatitidis Exophiala dermatitidis 6087 core Hydra vulgaris Hydra vulgaris 6183 core Schistosoma mansoni Schistosoma mansoni 6211 periphery Echinococcus multilocularis Echinococcus multilocularis 6238 periphery Caenorhabditis briggsae Caenorhabditis briggsae 6239 core Caenorhabditis elegans Caenorhabditis elegans 6326 core Bursaphelenchus xylophilus Bursaphelenchus xylophilus 6334 core Trichinella spiralis Trichinella spiralis 6412 core Helobdella robusta Helobdella robusta 6500 periphery Aplysia californica Aplysia californica 6669 core Daphnia pulex Daphnia pulex 7029 periphery Acyrthosiphon pisum Acyrthosiphon pisum 7070 core Tribolium castaneum Tribolium castaneum 7091 periphery Bombyx mori Bombyx mori 7159 periphery Aedes aegypti Aedes aegypti 7165 core Anopheles gambiae Anopheles gambiae 7176 core Culex quinquefasciatus Culex quinquefasciatus 7209 core Loa loa Loa loa 7213 periphery Ceratitis capitata Ceratitis capitata 7217 periphery Drosophila ananassae Drosophila ananassae 7220 periphery Drosophila erecta Drosophila erecta 7222 periphery Drosophila grimshawi Drosophila grimshawi 7227 core Drosophila melanogaster Drosophila melanogaster 7230 periphery Drosophila mojavensis Drosophila mojavensis 7234 periphery Drosophila persimilis Drosophila persimilis 7237 periphery Drosophila pseudoobscura Drosophila pseudoobscura 7244 periphery Drosophila virilis Drosophila virilis 7245 periphery Drosophila yakuba Drosophila yakuba 7260 periphery Drosophila willistoni Drosophila willistoni 7370 core Musca domestica Musca domestica 7425 core Nasonia vitripennis Nasonia vitripennis 7460 core Apis mellifera Apis mellifera 7668 core Strongylocentrotus purpuratus Strongylocentrotus purpuratus 7719 core Ciona intestinalis Ciona intestinalis 7739 core Branchiostoma floridae Branchiostoma floridae 7897 core Latimeria chalumnae Latimeria chalumnae 7918 core Lepisosteus oculatus Lepisosteus oculatus 7955 core Danio rerio Danio rerio 7994 periphery Astyanax mexicanus Astyanax mexicanus 8010 core Esox lucius Esox lucius 8049 core Gadus morhua Gadus morhua 8081 periphery Poecilia reticulata Poecilia reticulata 8083 periphery Xiphophorus maculatus Xiphophorus maculatus 8090 core Oryzias latipes Oryzias latipes 8128 core Oreochromis niloticus Oreochromis niloticus 8153 periphery Haplochromis burtoni Haplochromis burtoni 8364 core Xenopus tropicalis Xenopus (Silurana) tropicalis 8469 periphery Chelonia mydas Chelonia mydas 8479 core Chrysemys picta Chrysemys picta 8496 periphery Alligator mississippiensis Alligator mississippiensis 8932 periphery Columba livia Columba livia 9031 core Gallus gallus Gallus gallus 9258 core Ornithorhynchus anatinus Ornithorhynchus anatinus 9305 periphery Sarcophilus harrisii Sarcophilus harrisii 9315 periphery Macropus eugenii Macropus eugenii 9361 periphery Dasypus novemcinctus Dasypus novemcinctus 9365 periphery Erinaceus europaeus Erinaceus europaeus 9371 periphery Echinops telfairi Echinops telfairi 9402 periphery Pteropus alecto Pteropus alecto 9478 periphery Tarsius syrichta Tarsius syrichta 9483 periphery Callithrix jacchus Callithrix jacchus 9541 periphery Macaca fascicularis Macaca fascicularis 9544 periphery Macaca mulatta Macaca mulatta 9555 periphery Papio anubis Papio anubis 9593 periphery Gorilla gorilla Gorilla gorilla 9597 periphery Pan paniscus Pan paniscus 9598 periphery Pan troglodytes Pan troglodytes 9601 periphery Pongo abelii Pongo abelii 9606 core Homo sapiens Homo sapiens 9612 periphery Canis lupus Canis lupus 9646 periphery Ailuropoda melanoleuca Ailuropoda melanoleuca 9668 periphery Mustela putorius Mustela putorius 9685 periphery Felis catus Felis catus 9694 periphery Panthera tigris Panthera tigris 9707 periphery Odobenus rosmarus Odobenus rosmarus 9713 periphery Leptonychotes weddellii Leptonychotes weddellii 9733 periphery Orcinus orca Orcinus orca 9739 periphery Tursiops truncatus Tursiops truncatus 9767 periphery Balaenoptera acutorostrata Balaenoptera acutorostrata 9778 periphery Trichechus manatus Trichechus manatus 9785 core Loxodonta africana Loxodonta africana 9818 periphery Orycteropus afer Orycteropus afer 9823 periphery Sus scrofa Sus scrofa 9913 core Bos taurus Bos taurus 9940 core Ovis aries Ovis aries 9978 periphery Ochotona princeps Ochotona princeps 9986 core Oryctolagus cuniculus Oryctolagus cuniculus 10029 periphery Cricetulus griseus Cricetulus griseus 10036 periphery Mesocricetus auratus Mesocricetus auratus 10042 periphery Peromyscus maniculatus Peromyscus maniculatus 10090 core Mus musculus Mus musculus 10116 core Rattus norvegicus Rattus norvegicus 10141 core Cavia porcellus Cavia porcellus 10160 periphery Octodon degus Octodon degus 10181 periphery Heterocephalus glaber Heterocephalus glaber 10224 core Saccoglossus kowalevskii Saccoglossus kowalevskii 10228 core Trichoplax adhaerens Trichoplax adhaerens 12957 periphery Atta cephalotes Atta cephalotes 13035 core Dactylococcopsis salina Dactylococcopsis salina PCC8305 13037 core Danaus plexippus Danaus plexippus 13249 periphery Rhodnius prolixus Rhodnius prolixus 13333 core Amborella trichopoda Amborella trichopoda 13349 periphery Arthrobotrys oligospora Arthrobotrys oligospora 13616 periphery Monodelphis domestica Monodelphis domestica 13684 periphery Parastagonospora nodorum Parastagonospora nodorum 13689 core Sphingomonas paucimobilis Sphingomonas paucimobilis 13690 periphery Sphingobium yanoikuyae Sphingobium yanoikuyae 13735 core Pelodiscus sinensis Pelodiscus sinensis 15368 periphery Brachypodium distachyon Brachypodium distachyon 27288 core Naumovozyma castellii Naumovozyma castellii 27289 periphery Naumovozyma dairenensis Naumovozyma dairenensis 27337 periphery Verticillium dahliae Verticillium dahliae 27679 periphery Saimiri boliviensis Saimiri boliviensis 27923 core Mnemiopsis leidyi Mnemiopsis leidyi 28042 core Saccharopolyspora rectivirgula Saccharopolyspora rectivirgula 28072 periphery Nostoc sp. PCC7524 Nostoc sp. PCC7524 28115 periphery Porphyromonas macacae Porphyromonas macacae 28152 periphery Yersinia kristensenii Yersinia kristensenii 28176 periphery Photodesmus katoptron Candidatus Photodesmus katoptron 28229 core Colwellia psychrerythraea Colwellia psychrerythraea 28258 core Cobetia marina Cobetia marina 28377 core Anolis carolinensis Anolis carolinensis 28444 periphery Herbidospora cretacea Herbidospora cretacea 28532 periphery Tarenaya hassleriana Tarenaya hassleriana 28564 periphery Talaromyces stipitatus Talaromyces stipitatus 28583 core Allomyces macrogynus Allomyces macrogynus 28737 periphery Elephantulus edwardii Elephantulus edwardii 28985 core Kluyveromyces lactis Kluyveromyces lactis 29073 periphery Ursus maritimus Ursus maritimus 29078 periphery Eptesicus fuscus Eptesicus fuscus 29176 periphery Neospora caninum Neospora caninum 29306 periphery Streptomyces griseoluteus Streptomyces griseoluteus 29486 periphery Yersinia ruckeri Yersinia ruckeri 29495 periphery Vibrio navarrensis Vibrio navarrensis 29540 periphery Natrialba asiatica Natrialba asiatica DSM12278 29581 periphery Janthinobacterium lividum Janthinobacterium lividum 29730 periphery Gossypium raimondii Gossypium raimondii 29760 core Vitis vinifera Vitis vinifera 29850 periphery Gaeumannomyces graminis Gaeumannomyces graminis 29875 core Trichoderma virens Trichoderma virens 29908 periphery Sporothrix schenckii Sporothrix schenckii 30611 periphery Otolemur garnettii Otolemur garnettii 31033 periphery Takifugu rubripes Takifugu rubripes 31234 periphery Caenorhabditis remanei Caenorhabditis remanei 31870 periphery Colletotrichum graminicola Colletotrichum graminicola 31954 periphery Bifidobacterium pseudolongum Bifidobacterium pseudolongum subsp. pseudolongum 31964 core Clavibacter michiganensis sepedonicus Clavibacter michiganensis subsp. sepedonicus 32024 periphery Campylobacter sputorum Campylobacter sputorum biovar sputorum 32042 periphery Pseudomonas stutzeri ATCC14405 Pseudomonas stutzeri ATCC14405 32049 core Synechococcus sp. PCC7002 Synechococcus sp. PCC7002 32051 periphery Synechococcus sp. WH 7803 Synechococcus sp. WH 7803 32057 periphery Calothrix sp. PCC7103 Calothrix sp. PCC7103 32264 core Tetranychus urticae Tetranychus urticae 32507 periphery Neolamprologus brichardi Neolamprologus brichardi 33035 core Blautia producta Blautia producta 33169 core Eremothecium gossypii Eremothecium gossypii 33178 periphery Aspergillus terreus Aspergillus terreus 33188 periphery Uncinocarpus reesii Uncinocarpus reesii 33876 periphery Catenuloplanes japonicus Catenuloplanes japonicus 33898 periphery Streptomyces galbus Streptomyces galbus 33905 periphery Bifidobacterium thermophilum Bifidobacterium thermophilum 34007 core Paracoccus versutus Paracoccus versutus 34349 core Mixia osmundae Mixia osmundae 34373 periphery Blumeria graminis Blumeria graminis 34506 core Strongyloides ratti Strongyloides ratti 34740 periphery Heliconius melpomene Heliconius melpomene 34839 periphery Chinchilla lanigera Chinchilla lanigera 35128 core Thalassiosira pseudonana Thalassiosira pseudonana 35703 core Citrobacter amalonaticus Citrobacter amalonaticus 35720 periphery Thielavia terrestris Thielavia terrestris 35725 periphery Macrophomina phaseolina Macrophomina phaseolina 35754 periphery Dactylosporangium aurantiacum Dactylosporangium aurantiacum 35760 periphery Bifidobacterium choerinum Bifidobacterium choerinum 35841 periphery Bacillus thermoamylovorans Bacillus thermoamylovorans 36033 core Vanderwaltozyma polyspora Vanderwaltozyma polyspora 36080 periphery Mucor circinelloides Mucor circinelloides 36331 periphery Pythium irregulare Pythium irregulare 36630 core Neosartorya fischeri Neosartorya fischeri 36651 periphery Penicillium digitatum Penicillium digitatum 36809 core Mycobacterium abscessus Mycobacterium abscessus 36870 core Wigglesworthia glossinidia sp. Gbr Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 36874 periphery Porphyromonas cangingivalis Porphyromonas cangingivalis 36875 periphery Porphyromonas canoris Porphyromonas canoris 36914 periphery Lodderomyces elongisporus Lodderomyces elongisporus 37659 periphery Clostridium algidicarnis Clostridium algidicarnis 37682 periphery Aegilops tauschii Aegilops tauschii 37692 core Phytoplasma mali Candidatus Phytoplasma mali 37727 periphery Talaromyces marneffei Talaromyces marneffei 37919 core Rhodococcus opacus Rhodococcus opacus 38033 periphery Chaetomium globosum Chaetomium globosum 38654 periphery Alligator sinensis Alligator sinensis 38727 periphery Panicum virgatum Panicum virgatum 38833 periphery Micromonas pusilla Micromonas pusilla 39416 periphery Tuber melanosporum Tuber melanosporum 40041 core Streptococcus equi Streptococcus equi subsp. zooepidemicus 40127 periphery Neurospora tetrasperma Neurospora tetrasperma 40148 periphery Oryza glumipatula Oryza glumipatula 40149 periphery Oryza meridionalis Oryza meridionalis 40215 periphery Acinetobacter junii Acinetobacter junii 40373 periphery Acinetobacter sp. CIPA165 Acinetobacter sp. CIP-A165 40384 periphery Aspergillus kawachii Aspergillus kawachii 40483 periphery Fomitopsis pinicola Fomitopsis pinicola 40492 core Stereum hirsutum Stereum hirsutum 40559 core Botrytis cinerea Botrytis cinerea 40571 periphery Lentzea albidocapillata Lentzea albidocapillata 41431 core Cyanothece sp. PCC8801 Cyanothece sp. PCC8801 41875 periphery Bathycoccus prasinos Bathycoccus prasinos 42068 periphery Pneumocystis jirovecii Pneumocystis jirovecii 42099 periphery Pythium vexans Pythium vexans 42254 periphery Sorex araneus Sorex araneus 42256 periphery Rubrobacter radiotolerans Rubrobacter radiotolerans 42345 core Phoenix dactylifera Phoenix dactylifera 42374 core Candida dubliniensis Candida dubliniensis 42565 periphery Halomonas salina Halomonas salina 43151 periphery Anopheles darlingi Anopheles darlingi 43179 periphery Ictidomys tridecemlineatus Ictidomys tridecemlineatus 43228 periphery Capronia epimyces Capronia epimyces 43229 periphery Capronia coronata Capronia coronata 43354 periphery Prauserella rugosa Prauserella rugosa 43759 periphery Streptomyces wedmorensis Streptomyces wedmorensis 43989 core Cyanothece sp. ATCC51142 Cyanothece sp. ATCC51142 44056 core Aureococcus anophagefferens Aureococcus anophagefferens 44060 periphery Streptomyces megasporus Streptomyces megasporus 44251 core Paenibacillus durus Paenibacillus durus 44454 core Mycobacterium avium avium Mycobacterium avium subsp. avium 44689 core Dictyostelium discoideum Dictyostelium discoideum 45130 periphery Bipolaris sorokiniana Bipolaris sorokiniana 45151 periphery Pyrenophora triticirepentis Pyrenophora tritici-repentis 45157 core Cyanidioschyzon merolae Cyanidioschyzon merolae 45285 periphery Eremothecium cymbalariae Eremothecium cymbalariae 45351 periphery Nematostella vectensis Nematostella vectensis 45361 periphery Mycoplasma conjunctivae Mycoplasma conjunctivae 45596 periphery Candida tenuis Candida tenuis 46234 periphery Anabaena sp. 90 Anabaena sp. 90 46256 periphery Weissella hellenica Weissella hellenica 46429 core Sphingobium chlorophenolicum Sphingobium chlorophenolicum 46681 periphery Entamoeba dispar Entamoeba dispar 47716 periphery Streptomyces olivaceus Streptomyces olivaceus 47763 periphery Streptomyces lydicus Streptomyces lydicus 47839 periphery Mycobacterium triplex Mycobacterium triplex 48698 periphery Poecilia formosa Poecilia formosa 50452 periphery Arabis alpina Arabis alpina 50960 periphery Helicobacter trogontum Helicobacter trogontum 51337 periphery Jaculus jaculus Jaculus jaculus 51453 periphery Trichoderma reesei Trichoderma reesei 51511 periphery Ciona savignyi Ciona savignyi 52598 core Sulfitobacter sp. EE36 Sulfitobacter sp. EE-36 52644 periphery Haliaeetus leucocephalus Haliaeetus leucocephalus 53485 periphery Pyrenophora teres Pyrenophora teres 55207 core Pectobacterium betavasculorum Pectobacterium betavasculorum 55529 core Guillardia theta Guillardia theta 55601 core Vibrio anguillarum Vibrio anguillarum 55952 periphery Streptomyces toyocaensis Streptomyces toyocaensis 56107 periphery Cylindrospermum stagnale Cylindrospermum stagnale PCC7417 56110 periphery Oscillatoria acuminata Oscillatoria acuminata PCC6304 56780 periphery Syntrophus aciditrophicus Syntrophus aciditrophicus SB 57918 core Fragaria vesca Fragaria vesca 58123 core Spirillospora albida Spirillospora albida 58344 periphery Streptomyces celluloflavus Streptomyces celluloflavus 59196 periphery Rickettsiella grylli Rickettsiella grylli 59374 core Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 59463 periphery Myotis lucifugus Myotis lucifugus 59538 periphery Pantholops hodgsonii Pantholops hodgsonii 59689 periphery Arabidopsis lyrata Arabidopsis lyrata 59748 periphery Phytoplasma australiense Candidatus Phytoplasma australiense 59894 periphery Ficedula albicollis Ficedula albicollis 59919 periphery Prochlorococcus marinus pastoris Prochlorococcus marinus subsp. pastoris str. CCMP1986 59921 periphery Prochlorococcus marinus MIT9107 Prochlorococcus marinus str. MIT 9107 59925 periphery Prochlorococcus marinus GP2 Prochlorococcus marinus str. GP2 59926 periphery Prochlorococcus marinus SB Prochlorococcus marinus str. SB 59931 periphery Synechococcus sp. WH 7805 Synechococcus sp. WH 7805 60520 periphery Lactobacillus paraplantarum Lactobacillus paraplantarum 60711 periphery Chlorocebus sabaeus Chlorocebus sabaeus 61273 periphery Ophiostoma piceae Ophiostoma piceae 61459 periphery Coniosporium apollinis Coniosporium apollinis 61622 periphery Rhinopithecus roxellana Rhinopithecus roxellana 61647 core Pluralibacter gergoviae Pluralibacter gergoviae 61853 periphery Nomascus leucogenys Nomascus leucogenys 62928 core Azoarcus sp. BH72 Azoarcus sp. BH72 62977 core Acinetobacter sp. ADP1 Acinetobacter sp. ADP1 63400 periphery Arthroderma benhamiae Arthroderma benhamiae 63402 periphery Microsporum gypseum Microsporum gypseum 63405 core Arthroderma otae Arthroderma otae 63418 periphery Trichophyton equinum Trichophyton equinum 63577 periphery Trichoderma atroviride Trichoderma atroviride 63737 core Nostoc punctiforme Nostoc punctiforme PCC73102 64363 periphery Mycosphaerella pini Mycosphaerella pini 64471 periphery Synechococcus sp. CC9311 Synechococcus sp. CC9311 65071 core Pythium ultimum Pythium ultimum 65093 core Halothece sp. PCC7418 Halothece sp. PCC7418 65393 periphery Cyanothece sp. PCC7424 Cyanothece sp. PCC7424 65489 periphery Oryza barthii Oryza barthii 65497 periphery Actinoalloteichus cyanogriseus Actinoalloteichus cyanogriseus 65672 periphery Piriformospora indica Piriformospora indica 66269 core Pantoea stewartii Pantoea stewartii 66373 periphery Streptomyces niger Streptomyces niger 66377 periphery Streptomyces violens Streptomyces violens 66429 periphery Streptomyces roseoverticillatus Streptomyces roseoverticillatus 66692 periphery Bacillus clausii Bacillus clausii KSM-K16 66869 periphery Streptomyces atroolivaceus Streptomyces atroolivaceus 66874 periphery Streptomyces bicolor Streptomyces bicolor 66875 periphery Streptomyces catenulae Streptomyces catenulae 66897 periphery Streptomyces griseorubens Streptomyces griseorubens 67257 periphery Streptomyces albus albus Streptomyces albus subsp. albus 67267 periphery Streptomyces alboflavus Streptomyces alboflavus 67275 periphery Streptomyces aureocirculatus Streptomyces aureocirculatus 67281 periphery Streptomyces californicus Streptomyces californicus 67315 periphery Streptomyces lavenduligriseus Streptomyces lavenduligriseus 67332 periphery Streptomyces mutabilis Streptomyces mutabilis 67352 periphery Streptomyces purpeofuscus Streptomyces purpeofuscus 67356 periphery Streptomyces resistomycificus Streptomyces resistomycificus 67373 periphery Streptomyces varsoviensis Streptomyces varsoviensis 67593 periphery Phytophthora sojae Phytophthora sojae 68170 periphery Lechevalieria aerocolonigenes Lechevalieria aerocolonigenes 68194 periphery Streptomyces durhamensis Streptomyces durhamensis 68199 periphery Streptomyces flavochromogenes Streptomyces flavochromogenes 68219 periphery Streptomyces iakyrus Streptomyces iakyrus 68223 periphery Streptomyces katrae Streptomyces katrae 68260 periphery Streptomyces pyridomyceticus Streptomyces pyridomyceticus 68570 periphery Streptomyces albulus Streptomyces albulus 68886 periphery Theileria orientalis Theileria orientalis 69014 periphery Thermococcus kodakarensis Thermococcus kodakarensis KOD1 69042 periphery Synechococcus sp. WH 5701 Synechococcus sp. WH 5701 69279 core Aquamicrobium defluvii Aquamicrobium defluvii 69293 core Gasterosteus aculeatus Gasterosteus aculeatus 69319 periphery Microplitis demolitor Microplitis demolitor 69328 periphery Pseudomonas sp. VLB120 Pseudomonas sp. VLB120 69395 periphery Caulobacter henricii Caulobacter henricii 69781 periphery Penicillium oxalicum Penicillium oxalicum 70448 core Ostreococcus tauri Ostreococcus tauri 70601 periphery Pyrococcus horikoshii Pyrococcus horikoshii OT3 71139 core Eucalyptus grandis Eucalyptus grandis 71421 core Haemophilus influenzae Haemophilus influenzae Rd KW20 72004 periphery Bos mutus Bos mutus 72019 periphery Sphaeroforma arctica Sphaeroforma arctica 72228 periphery Ophiocordyceps sinensis Ophiocordyceps sinensis 72558 periphery Sporisorium reilianum Sporisorium reilianum 72658 periphery Boechera stricta Boechera stricta 72664 periphery Eutrema salsugineum Eutrema salsugineum 73044 periphery Streptomyces seoulensis Streptomyces seoulensis 73501 periphery Cordyceps militaris Cordyceps militaris 74545 periphery Prochlorococcus marinus MIT9302 Prochlorococcus marinus str. MIT 9302 74546 periphery Prochlorococcus marinus MIT9312 Prochlorococcus marinus str. MIT 9312 74547 core Prochlorococcus marinus MIT9313 Prochlorococcus marinus str. MIT 9313 75379 core Thiomonas intermedia Thiomonas intermedia K12 76114 core Aromatoleum aromaticum Aromatoleum aromaticum EbN1 76636 periphery Mycetocola saprophilus Mycetocola saprophilus 76869 periphery Pseudomonas putida GB1 Pseudomonas putida GB-1 77586 periphery Leersia perrieri Leersia perrieri 77635 periphery Bifidobacterium subtile Bifidobacterium subtile 78245 core Xanthobacter autotrophicus Xanthobacter autotrophicus Py2 78344 periphery Bifidobacterium gallinarum Bifidobacterium gallinarum 78345 periphery Bifidobacterium merycicum Bifidobacterium merycicum 78346 periphery Bifidobacterium ruminantium Bifidobacterium ruminantium 78398 periphery Pectobacterium carotovorum odoriferum Pectobacterium carotovorum subsp. odoriferum 78579 periphery Myceliophthora thermophila Myceliophthora thermophila 78898 core Mortierella verticillata Mortierella verticillata 79684 periphery Microtus ochrogaster Microtus ochrogaster 80637 periphery Coniophora puteana Coniophora puteana 80884 periphery Colletotrichum higginsianum Colletotrichum higginsianum 81824 core Monosiga brevicollis Monosiga brevicollis 81985 periphery Capsella rubella Capsella rubella 82508 core Trichosporon asahii Trichosporon asahii 82654 periphery Pseudanabaena sp. PCC7367 Pseudanabaena sp. PCC7367 82995 core Serratia grimesii Serratia grimesii 82996 periphery Serratia plymuthica Serratia plymuthica 83219 core Sulfitobacter mediterraneus Sulfitobacter mediterraneus 83332 core Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Rv 83344 periphery Pseudocercospora fijiensis Pseudocercospora fijiensis 83406 periphery Gammaproteobacteria bacterium HdN1 gamma proteobacterium HdN1 84531 core Lysobacter antibioticus Lysobacter antibioticus 84588 periphery Synechococcus sp. WH 8102 Synechococcus sp. WH 8102 84751 periphery Pseudozyma flocculosa Pseudozyma flocculosa 85643 core Thauera sp. MZ1T Thauera sp. MZ1T 85681 periphery Citrus clementina Citrus clementina 85929 periphery Sphaerulina musiva Sphaerulina musiva 85962 periphery Helicobacter pylori 26695 Helicobacter pylori 26695 85963 periphery Helicobacter pylori J99 Helicobacter pylori J99 85982 periphery Serpula lacrymans Serpula lacrymans 86049 periphery Cladophialophora carrionii Cladophialophora carrionii 86106 core endosymbiont of Acanthamoeba endosymbiont of Acanthamoeba sp. UWC8 86416 periphery Clostridium pasteurianum BC1 Clostridium pasteurianum BC1 87626 core Pseudoalteromonas tunicata Pseudoalteromonas tunicata D2 88036 core Selaginella moellendorffii Selaginella moellendorffii 89187 periphery Roseovarius nubinhibens Roseovarius nubinhibens ISM 89462 periphery Bubalus bubalis Bubalus bubalis 90371 core Salmonella enterica Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium 90675 periphery Camelina sativa Camelina sativa 90813 core Thiomicrospira sp. MilosT1 Thiomicrospira sp. Milos-T1 90814 periphery Thiomicrospira sp. MilosT2 Thiomicrospira sp. Milos-T2 91464 core Synechococcus sp. PCC7335 Synechococcus sp. PCC7335 91604 core Paracaedibacter acanthamoebae Candidatus Paracaedibacter acanthamoebae 92637 periphery Metarhizium acridum Metarhizium acridum 93057 periphery Prochlorococcus marinus MIT9201 Prochlorococcus marinus str. MIT 9201 93059 periphery Prochlorococcus marinus MIT9211 Prochlorococcus marinus str. MIT 9211 93060 periphery Prochlorococcus marinus MIT9215 Prochlorococcus marinus str. MIT 9215 93220 core Pandoraea pnomenusa Pandoraea pnomenusa 93612 periphery Setosphaeria turcica Setosphaeria turcica 94122 periphery Shewanella sp. ANA3 Shewanella sp. ANA-3 94624 periphery Bordetella petrii Bordetella petrii 95619 periphery Pseudomonas sp. M1 Pseudomonas sp. M1 96561 core Desulfococcus oleovorans Desulfococcus oleovorans Hxd3 97096 periphery Eutypa lata Eutypa lata 97137 periphery Lactobacillus sp. ASF360 Lactobacillus sp. ASF360 97138 periphery Clostridium sp. ASF356 Clostridium sp. ASF356 97139 periphery Clostridium sp. ASF502 Clostridium sp. ASF502 98439 periphery Fischerella thermalis Fischerella thermalis PCC7521 99158 periphery Hammondia hammondi Hammondia hammondi 99598 periphery Calothrix sp. PCC7507 Calothrix sp. PCC7507 100226 core Streptomyces coelicolor Streptomyces coelicolor A3(2) 100901 periphery Wolbachia sp. Ooc Wolbachia endosymbiont of Onchocerca ochengi 101028 periphery Fusarium pseudograminearum Fusarium pseudograminearum 101162 core Bipolaris oryzae Bipolaris oryzae 101510 periphery Rhodococcus jostii Rhodococcus jostii RHA1 101852 periphery Glarea lozoyensis Glarea lozoyensis 102107 periphery Prunus mume Prunus mume 102125 periphery Xenococcus sp. PCC7305 Xenococcus sp. PCC7305 102129 core Leptolyngbya sp. PCC7375 Leptolyngbya sp. PCC7375 102232 periphery Gloeocapsa sp. PCC73106 Gloeocapsa sp. PCC73106 103372 periphery Acromyrmex echinatior Acromyrmex echinatior 103690 periphery Nostoc sp. PCC7120 Nostoc sp. PCC7120 103733 core Saccharothrix syringae Saccharothrix syringae 104355 core Gloeophyllum trabeum Gloeophyllum trabeum 104623 periphery Serratia sp. ATCC39006 Serratia sp. ATCC39006 105420 core Streptacidiphilus neutrinimicus Streptacidiphilus neutrinimicus 105422 core Streptacidiphilus carbonis Streptacidiphilus carbonis 105425 core Streptacidiphilus albus Streptacidiphilus albus 105559 periphery Nitrosococcus watsonii Nitrosococcus watsonii C-113 106370 core Frankia sp. CcI3 Frankia sp. CcI3 106582 periphery Maylandia zebra Maylandia zebra 106648 core Acinetobacter bereziniae Acinetobacter bereziniae 107635 core Methylosinus sp. LW3 Methylosinus sp. LW3 107636 periphery Methylosinus sp. PW1 Methylosinus sp. PW1 107806 core Buchnera aphidicola APS Buchnera aphidicola str. APS 109478 periphery Myotis brandtii Myotis brandtii 109760 core Spizellomyces punctatus Spizellomyces punctatus 109871 periphery Batrachochytrium dendrobatidis Batrachochytrium dendrobatidis 110319 periphery Nocardioides sp. CF8 Nocardioides sp. CF8 110365 core Gregarina niphandrodes Gregarina niphandrodes 110662 periphery Synechococcus sp. CC9605 Synechococcus sp. CC9605 110663 periphery Synechococcus sp. CC9616 Synechococcus sp. CC9616 111105 core Porphyromonas gulae Porphyromonas gulae 111780 core Stanieria cyanosphaera Stanieria cyanosphaera PCC7437 111781 periphery Leptolyngbya sp. PCC7376 Leptolyngbya sp. PCC7376 112098 periphery Saprolegnia diclina Saprolegnia diclina 113355 core Geminocystis herdmanii Geminocystis herdmanii PCC6308 113395 periphery Bradyrhizobium sp. Tv2a2 Bradyrhizobium sp. Tv2a-2 113608 core Tetrapisispora phaffii Tetrapisispora phaffii 114615 core Bradyrhizobium sp. ORS278 Bradyrhizobium sp. ORS 278 115417 core Pythium iwayamai Pythium iwayamai 115711 periphery Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae AR39 115713 core Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae CWL029 117187 core Fusarium verticillioides Fusarium verticillioides 118005 periphery Chrysiogenes arsenatis Chrysiogenes arsenatis DSM11915 118161 core Pleurocapsa sp. PCC7319 Pleurocapsa sp. PCC7319 118163 periphery Pleurocapsa sp. PCC7327 Pleurocapsa sp. PCC7327 118166 core Nodosilinea nodulosa Nodosilinea nodulosa PCC7104 118168 core Coleofasciculus chthonoplastes Coleofasciculus chthonoplastes PCC7420 118173 core Pseudanabaena sp. PCC6802 Pseudanabaena sp. PCC6802 118797 periphery Lipotes vexillifer Lipotes vexillifer 120017 core Ustilago hordei Ustilago hordei 121225 core Pediculus humanus Pediculus humanus 121759 periphery Paracoccidioides brasiliensis Paracoccidioides brasiliensis 123214 core Persephonella marina Persephonella marina EX-H1 123899 periphery Bordetella trematum Bordetella trematum 126957 core Strigamia maritima Strigamia maritima 128390 periphery Nipponia nippon Nipponia nippon 130081 periphery Galdieria sulphuraria Galdieria sulphuraria 132113 periphery Bombus impatiens Bombus impatiens 132908 periphery Pteropus vampyrus Pteropus vampyrus 134676 core Actinoplanes sp. SE50110 Actinoplanes sp. SE50/110 135651 periphery Caenorhabditis brenneri Caenorhabditis brenneri 136037 core Zootermopsis nevadensis Zootermopsis nevadensis 136273 periphery Kocuria polaris Kocuria polaris 136993 periphery Methylosinus sp. LW4 Methylosinus sp. LW4 138119 core Desulfitobacterium hafniense Desulfitobacterium hafniense Y51 140110 periphery Nectria haematococca Nectria haematococca 140626 core Lachnobacterium bovis Lachnobacterium bovis 143224 core Zobellia uliginosa Zobellia uliginosa 144197 periphery Stegastes partitus Stegastes partitus 146891 core Prochlorococcus marinus AS9601 Prochlorococcus marinus str. AS9601 146922 periphery Streptomyces griseofuscus Streptomyces griseofuscus 148304 periphery Magnaporthiopsis poae Magnaporthiopsis poae 148814 core Lactobacillus kunkeei Lactobacillus kunkeei 148960 periphery Wallemia sebi Wallemia sebi 153496 periphery Kozakia baliensis Kozakia baliensis 153721 core Sporocytophaga myxococcoides Sporocytophaga myxococcoides 153948 periphery Nitrosomonas sp. AL212 Nitrosomonas sp. AL212 155515 periphery Gallibacterium genomosp. Gallibacterium genomosp. 1 155864 periphery Escherichia coli O157H7 Escherichia coli O157:H7 str. EDL933 156578 core Alteromonadales bacterium TW7 Alteromonadales bacterium TW-7 156889 core Magnetococcus marinus Magnetococcus marinus MC-1 156978 periphery Corynebacterium imitans Corynebacterium imitans 157072 core Aphanomyces invadans Aphanomyces invadans 157783 periphery Pseudomonas cremoricolorata Pseudomonas cremoricolorata 158189 core Sphaerochaeta globosa Sphaerochaeta globosa str. Buddy 158190 periphery Sphaerochaeta pleomorpha Sphaerochaeta pleomorpha str. Grapes 158500 core Novosphingobium resinovorum Novosphingobium resinovorum 158787 periphery Bifidobacterium scardovii Bifidobacterium scardovii 158822 core Cedecea neteri Cedecea neteri 159087 core Dechloromonas aromatica Dechloromonas aromatica RCB 159450 periphery Burkholderia sacchari Burkholderia sacchari 159749 periphery Thalassiosira oceanica Thalassiosira oceanica 160488 core Pseudomonas putida KT2440 Pseudomonas putida KT2440 160492 core Xylella fastidiosa 9a5c Xylella fastidiosa 9a5c 160799 core Paenibacillus borealis Paenibacillus borealis 160860 periphery Auricularia delicata Auricularia delicata 161156 core Thermodesulfobacterium hydrogeniphilum Thermodesulfobacterium hydrogeniphilum 161528 core Erythrobacter sp. SD21 Erythrobacter sp. SD-21 161934 core Beta vulgaris Beta vulgaris 162425 core Aspergillus nidulans Aspergillus nidulans 163164 core Wolbachia sp. Dme Wolbachia endosymbiont of Drosophila melanogaster 163908 periphery Anabaena sp. PCC7108 Anabaena sp. PCC7108 164328 core Phytophthora ramorum Phytophthora ramorum 164757 periphery Mycobacterium sp. JLS Mycobacterium sp. JLS 166314 periphery Synechococcus sp. WH 8109 Synechococcus sp. WH 8109 166318 periphery Synechococcus sp. WH 8016 Synechococcus sp. WH 8016 167539 periphery Prochlorococcus marinus CCMP1375 Prochlorococcus marinus subsp. marinus str. CCMP1375 167542 periphery Prochlorococcus marinus MIT9515 Prochlorococcus marinus str. MIT 9515 167546 periphery Prochlorococcus marinus MIT9301 Prochlorococcus marinus str. MIT 9301 167548 periphery Prochlorococcus marinus MIT9314 Prochlorococcus marinus str. MIT 9314 167550 periphery Prochlorococcus marinus MIT9322 Prochlorococcus marinus str. MIT 9322 167555 periphery Prochlorococcus marinus NATL1A Prochlorococcus marinus str. NATL1A 169963 core Listeria monocytogenes EGDe Listeria monocytogenes EGD-e 170187 core Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae TIGR4 171101 core Streptococcus pneumoniae R6 Streptococcus pneumoniae R6 171693 core Oceanobacillus picturae Oceanobacillus picturae 172045 core Elizabethkingia miricola Elizabethkingia miricola 172088 periphery Bradyrhizobium sp. thb2 Bradyrhizobium sp. th.b2 176090 periphery Streptococcus sinensis Streptococcus sinensis 176275 periphery Beauveria bassiana Beauveria bassiana 176279 periphery Staphylococcus epidermidis RP62A Staphylococcus epidermidis RP62A 176280 periphery Staphylococcus epidermidis ATCC12228 Staphylococcus epidermidis ATCC12228 176299 core Agrobacterium fabrum Agrobacterium fabrum str. C58 176946 periphery Python bivittatus Python bivittatus 177416 core Francisella tularensis SCHUS4 Francisella tularensis subsp. tularensis SCHU S4 177437 core Desulfobacterium autotrophicum Desulfobacterium autotrophicum HRM2 177439 core Desulfotalea psychrophila Desulfotalea psychrophila LSv54 178306 periphery Pyrobaculum aerophilum Pyrobaculum aerophilum str. IM2 178901 periphery Acetobacter malorum Acetobacter malorum 179408 core Oscillatoria nigroviridis Oscillatoria nigro-viridis PCC7112 180281 core Cyanobium sp. PCC7001 Cyanobium sp. PCC7001 180332 core Robinsoniella peoriensis Robinsoniella peoriensis 181119 periphery Pseudopodoces humilis Pseudopodoces humilis 182082 periphery Chlamydophila pneumoniae TW183 Chlamydophila pneumoniae TW-183 182217 periphery Helicobacter cetorum MIT007128 Helicobacter cetorum MIT 00-7128 185453 periphery Chrysochloris asiatica Chrysochloris asiatica 186490 core Baumannia cicadellinicola Candidatus Baumannia cicadellinicola 186497 periphery Pyrococcus furiosus Pyrococcus furiosus DSM3638 187272 core Alkalilimnicola ehrlichii Alkalilimnicola ehrlichii MLHE-1 187303 periphery Methylocystis sp. SC2 Methylocystis sp. SC2 188626 periphery Dermacoccus sp. Ellin185 Dermacoccus sp. Ellin185 189425 core Paenibacillus graminis Paenibacillus graminis 189426 core Paenibacillus odorifer Paenibacillus odorifer 189753 periphery Bradyrhizobium sp. Ec33 Bradyrhizobium sp. Ec3.3 190304 core Fusobacterium nucleatum ATCC25586 Fusobacterium nucleatum subsp. nucleatum ATCC25586 190486 periphery Xanthomonas axonopodis citri Xanthomonas axonopodis pv. citri str. 306 190650 core Caulobacter crescentus CB15 Caulobacter crescentus CB15 191610 periphery Corynebacterium atypicum Corynebacterium atypicum 192222 core Campylobacter jejuni NCTC11168 Campylobacter jejuni subsp. jejuni NCTC11168 192875 core Capsaspora owczarzaki Capsaspora owczarzaki 192952 periphery Methanosarcina mazei Methanosarcina mazei Go1 194439 core Chlorobium tepidum Chlorobium tepidum TLS 194867 periphery Sphingomonas sp. ATCC31555 Sphingomonas sp. ATCC31555 195103 core Clostridium perfringens ATCC13124 Clostridium perfringens ATCC13124 195105 core Haematobacter massiliensis Haematobacter massiliensis 195250 periphery Synechococcus sp. PCC7336 Synechococcus sp. PCC7336 195253 periphery Synechococcus sp. PCC6312 Synechococcus sp. PCC6312 195522 core Thermococcus nautili Thermococcus nautili 196162 periphery Nocardioides sp. JS614 Nocardioides sp. JS614 196164 periphery Corynebacterium efficiens Corynebacterium efficiens YS-314 196367 periphery Burkholderia sordidicola Burkholderia sordidicola 196490 periphery Bradyrhizobium sp. Ai1a2 Bradyrhizobium sp. Ai1a-2 196627 periphery Corynebacterium glutamicum Corynebacterium glutamicum ATCC13032 197221 core Thermosynechococcus elongatus Thermosynechococcus elongatus BP-1 198094 periphery Bacillus anthracis Ames Bacillus anthracis str. Ames 198214 core Shigella flexneri Shigella flexneri 2a str. 301 198467 core Anoxybacillus gonensis Anoxybacillus gonensis 198628 core Dickeya dadantii 3937 Dickeya dadantii 3937 198804 periphery Buchnera aphidicola Sg Buchnera aphidicola str. Sg 199306 core Coccidioides posadasii Coccidioides posadasii 199310 core Escherichia coli CFT073 Escherichia coli CFT073 202698 periphery Punctularia strigosozonata Punctularia strigosozonata 202752 periphery Listeria ivanovii londoniensis Listeria ivanovii subsp. londoniensis 202952 periphery Acinetobacter gerneri Acinetobacter gerneri 202954 periphery Acinetobacter tandoii Acinetobacter tandoii 202955 periphery Acinetobacter tjernbergiae Acinetobacter tjernbergiae 202956 periphery Acinetobacter towneri Acinetobacter towneri 203119 core Ruminiclostridium thermocellum Ruminiclostridium thermocellum ATCC27405 203120 periphery Leuconostoc mesenteroides Leuconostoc mesenteroides subsp. mesenteroides ATCC8293 203122 core Saccharophagus degradans Saccharophagus degradans 2-40 203123 periphery Oenococcus oeni Oenococcus oeni PSU-1 203124 core Trichodesmium erythraeum Trichodesmium erythraeum IMS101 203267 core Tropheryma whipplei Tropheryma whipplei str. Twist 203275 core Tannerella forsythia Tannerella forsythia ATCC43037 203907 periphery Blochmannia floridanus Candidatus Blochmannia floridanus 203908 periphery Melampsora laricipopulina Melampsora larici-populina 204536 core Sulfurihydrogenibium azorense Sulfurihydrogenibium azorense Az-Fu1 204669 core Koribacter versatilis Candidatus Koribacter versatilis Ellin345 204773 core Herminiimonas arsenicoxydans Herminiimonas arsenicoxydans 205914 periphery Haemophilus somnus Haemophilus somnus 129PT 205918 periphery Pseudomonas syringae B728a Pseudomonas syringae pv. syringae B728a 205920 periphery Ehrlichia chaffeensis Ehrlichia chaffeensis str. Arkansas 205922 periphery Pseudomonas fluorescens Pf01 Pseudomonas fluorescens Pf0-1 207559 periphery Desulfovibrio alaskensis Desulfovibrio alaskensis G20 207954 core Neptuniibacter caesariensis Neptuniibacter caesariensis 208439 periphery Amycolatopsis japonica Amycolatopsis japonica 208444 periphery Amycolatopsis vancoresmycina Amycolatopsis vancoresmycina 208596 core Carnobacterium sp. 174 Carnobacterium sp. 17-4 208960 periphery Fomitiporia mediterranea Fomitiporia mediterranea 209285 periphery Chaetomium thermophilum Chaetomium thermophilum 210007 periphery Streptococcus mutans UA159 Streptococcus mutans UA159 211110 periphery Streptococcus agalactiae NEM316 Streptococcus agalactiae NEM316 211114 periphery Allokutzneria albata Allokutzneria albata 211165 core Chlorogloeopsis fritschii Chlorogloeopsis fritschii PCC6912 211586 core Shewanella oneidensis Shewanella oneidensis MR-1 212042 core Anaplasma phagocytophilum Anaplasma phagocytophilum str. HZ 214092 core Yersinia pestis CO92 Yersinia pestis CO92 215358 periphery Larimichthys crocea Larimichthys crocea 215803 periphery Enhygromyxa salina Enhygromyxa salina 216142 periphery Pseudomonas rhizosphaerae Pseudomonas rhizosphaerae 216432 core Croceibacter atlanticus Croceibacter atlanticus HTCC2559 216591 core Burkholderia cenocepacia Burkholderia cenocepacia J2315 216594 periphery Mycobacterium marinum Mycobacterium marinum M 216595 periphery Pseudomonas fluorescens SBW25 Pseudomonas fluorescens SBW25 216596 core Rhizobium leguminosarum 3841 Rhizobium leguminosarum bv. viciae 3841 216816 core Bifidobacterium longum Bifidobacterium longum 218140 periphery Bifidobacterium psychraerophilum Bifidobacterium psychraerophilum 218284 periphery Bacillus vietnamensis Bacillus vietnamensis 218491 core Pectobacterium atrosepticum Pectobacterium atrosepticum SCRI1043 218493 periphery Salmonella bongori NCTC12419 Salmonella bongori NCTC 12419 218495 periphery Streptococcus uberis Streptococcus uberis 0140J 218497 periphery Chlamydophila abortus Chlamydophila abortus S26/3 218851 periphery Aquilegia coerulea Aquilegia coerulea 219305 core Micromonospora sp. ATCC39149 Micromonospora sp. ATCC39149 220341 core Salmonella enterica CT18 Salmonella enterica subsp. enterica serovar Typhi str. CT18 220664 periphery Pseudomonas protegens Pf5 Pseudomonas protegens Pf-5 220668 periphery Lactobacillus plantarum Lactobacillus plantarum WCFS1 221027 periphery Treponema putidum Treponema putidum 221103 periphery Moniliophthora roreri Moniliophthora roreri 221109 core Oceanobacillus iheyensis Oceanobacillus iheyensis HTE831 221288 periphery Mastigocladopsis repens Mastigocladopsis repens PCC10914 221359 periphery Synechococcus sp. RS9916 Synechococcus sp. RS9916 221360 periphery Synechococcus sp. RS9917 Synechococcus sp. RS9917 221988 core Mannheimia succiniciproducens Mannheimia succiniciproducens MBEL55E 222534 periphery Frankia sp. BMG512 Frankia sp. BMG5.12 222891 periphery Neorickettsia sennetsu Neorickettsia sennetsu str. Miyayama 222984 periphery Natrinema altunense Natrinema altunense 223184 core Kocuria marina Kocuria marina 223192 periphery Togninia minima Togninia minima 223283 core Pseudomonas syringae tomato Pseudomonas syringae pv. tomato str. DC3000 223926 periphery Vibrio parahaemolyticus Vibrio parahaemolyticus RIMD 2210633 224308 core Bacillus subtilis Bacillus subtilis subsp. subtilis str. 168 224324 core Aquifex aeolicus Aquifex aeolicus VF5 224325 core Archaeoglobus fulgidus Archaeoglobus fulgidus DSM4304 224719 periphery Methanobrevibacter sp. AbM4 Methanobrevibacter sp. AbM4 224911 periphery Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 110 224914 core Brucella melitensis Brucella melitensis bv. 1 str. 16M 224915 periphery Buchnera aphidicola Bp Buchnera aphidicola str. Bp 225117 periphery Pyrus x bretschneideri Pyrus x bretschneideri 225400 periphery Myotis davidii Myotis davidii 225849 core Shewanella piezotolerans Shewanella piezotolerans WP3 225937 periphery Marinobacter adhaerens Marinobacter adhaerens HP15 226185 core Enterococcus faecalis V583 Enterococcus faecalis V583 226186 core Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 226899 periphery Grosmannia clavigera Grosmannia clavigera 227086 core Bigelowiella natans Bigelowiella natans 227377 core Coxiella burnetii Coxiella burnetii RSA 493 227882 periphery Streptomyces avermitilis Streptomyces avermitilis MA-4680 227941 core Chlamydophila caviae Chlamydophila caviae GPIC 228399 core Actinobacillus pleuropneumoniae 1 4074 Actinobacillus pleuropneumoniae serovar 1 str. 4074 228405 core Hyphomonas neptunium Hyphomonas neptunium ATCC15444 228410 periphery Nitrosomonas europaea Nitrosomonas europaea ATCC19718 231434 periphery Beijerinckia mobilis Beijerinckia mobilis 232346 core Halomonas alkaliantarctica Halomonas alkaliantarctica 232348 periphery Synechococcus sp. CB0101 Synechococcus sp. CB0101 232721 core Acidovorax sp. JS42 Acidovorax sp. JS42 233412 periphery Haemophilus ducreyi Haemophilus ducreyi 35000HP 234267 core Solibacter usitatus Candidatus Solibacter usitatus Ellin6076 234621 periphery Rhodococcus erythropolis Rhodococcus erythropolis PR4 234826 periphery Anaplasma marginale Maries Anaplasma marginale str. St. Maries 234831 core Pseudoalteromonas sp. SM9913 Pseudoalteromonas sp. SM9913 235279 periphery Helicobacter hepaticus Helicobacter hepaticus ATCC51449 235909 core Geobacillus kaustophilus Geobacillus kaustophilus HTA426 235985 core Streptacidiphilus jiangxiensis Streptacidiphilus jiangxiensis 236097 core Alcanivorax sp. DG881 Alcanivorax sp. DG881 236814 periphery Chryseobacterium formosense Chryseobacterium formosense 237368 core Scalindua brodae Candidatus Scalindua brodae 237609 periphery Pseudomonas alkylphenolia Pseudomonas alkylphenolia 237727 periphery Erythrobacter sp. NAP1 Erythrobacter sp. NAP1 240015 core Acidobacterium capsulatum Acidobacterium capsulatum ATCC51196 240016 core Verrucomicrobium spinosum Verrucomicrobium spinosum DSM4136 240292 core Anabaena variabilis Anabaena variabilis ATCC29413 240302 core Halobacillus dabanensis Halobacillus dabanensis 242159 core Ostreococcus lucimarinus Ostreococcus 'lucimarinus' 242619 core Porphyromonas gingivalis W83 Porphyromonas gingivalis W83 243090 core Rhodopirellula baltica Rhodopirellula baltica SH 1 243159 core Acidithiobacillus ferrooxidans ATCC23270 Acidithiobacillus ferrooxidans ATCC23270 243160 periphery Burkholderia mallei Burkholderia mallei ATCC23344 243161 periphery Chlamydia muridarum Chlamydia muridarum str. Nigg 243164 core Dehalococcoides mccartyi 195 Dehalococcoides mccartyi 195 243230 core Deinococcus radiodurans Deinococcus radiodurans R1 243231 core Geobacter sulfurreducens Geobacter sulfurreducens PCA 243232 core Methanocaldococcus jannaschii Methanocaldococcus jannaschii DSM2661 243233 core Methylococcus capsulatus Methylococcus capsulatus str. Bath 243265 periphery Photorhabdus luminescens Photorhabdus luminescens subsp. laumondii TTO1 243272 periphery Mycoplasma arthritidis Mycoplasma arthritidis 158L3-1 243273 periphery Mycoplasma genitalium Mycoplasma genitalium G37 243274 core Thermotoga maritima Thermotoga maritima MSB8 243275 core Treponema denticola Treponema denticola ATCC35405 243276 core Treponema pallidum Treponema pallidum subsp. pallidum str. Nichols 243277 core Vibrio cholerae O1 Vibrio cholerae O1 biovar El Tor str. N16961 243365 core Chromobacterium violaceum Chromobacterium violaceum ATCC12472 243924 periphery Pseudomonas lutea Pseudomonas lutea 244447 periphery Cynoglossus semilaevis Cynoglossus semilaevis 244581 periphery Caedibacter acanthamoebae Candidatus Caedibacter acanthamoebae 244582 periphery Paracaedibacter symbiosus Candidatus Paracaedibacter symbiosus 245174 core Wallemia ichthyophaga Wallemia ichthyophaga 246194 core Carboxydothermus hydrogenoformans Carboxydothermus hydrogenoformans Z-2901 246195 core Dichelobacter nodosus Dichelobacter nodosus VCS1703A 246196 periphery Mycobacterium smegmatis MC2155 Mycobacterium smegmatis str. MC2 155 246197 periphery Myxococcus xanthus Myxococcus xanthus DK 1622 246199 core Ruminococcus albus 8 Ruminococcus albus 8 246200 periphery Ruegeria pomeroyi Ruegeria pomeroyi DSS-3 246201 core Streptococcus mitis NCTC 12261 Streptococcus mitis NCTC 12261 246437 periphery Tupaia chinensis Tupaia chinensis 246969 periphery Thermococcus sp. AM4 Thermococcus sp. AM4 247156 periphery Nocardia farcinica Nocardia farcinica IFM 10152 247490 core planctomycete KSU1 planctomycete KSU-1 247633 core Gammaproteobacteria bacterium HTCC2143 marine gamma proteobacterium HTCC2143 247634 core Gammaproteobacteria bacterium HTCC2148 marine gamma proteobacterium HTCC2148 247639 periphery Gammaproteobacteria bacterium HTCC2080 marine gamma proteobacterium HTCC2080 248742 periphery Coccomyxa subellipsoidea Coccomyxa subellipsoidea 251221 core Gloeobacter violaceus Gloeobacter violaceus PCC7421 251229 periphery Chroococcidiopsis thermalis Chroococcidiopsis thermalis PCC7203 252305 core Oceanicola batsensis Oceanicola batsensis HTCC2597 253839 periphery Streptomyces sp. C Streptomyces sp. C 254945 periphery Ehrlichia ruminantium Ehrlichia ruminantium str. Welgevonden 255470 periphery Dehalococcoides mccartyi CBDB1 Dehalococcoides mccartyi CBDB1 257310 core Bordetella bronchiseptica Bordetella bronchiseptica RB50 257313 periphery Bordetella pertussis Tohama Bordetella pertussis Tohama I 257314 periphery Lactobacillus johnsonii Lactobacillus johnsonii NCC 533 257363 periphery Rickettsia typhi Rickettsia typhi str. Wilmington 258052 core Kitasatospora arboriphila Kitasatospora arboriphila 258533 periphery Mycobacterium cosmeticum Mycobacterium cosmeticum 258594 core Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris CGA009 259536 core Psychrobacter arcticus Psychrobacter arcticus 273-4 260799 periphery Bacillus anthracis Sterne Bacillus anthracis str. Sterne 261292 periphery Nitrosomonas sp. Is79A3 Nitrosomonas sp. Is79A3 261317 core Buchnera aphidicola Ctu Buchnera aphidicola str. Ctu 262316 periphery Mycobacterium avium paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 262543 periphery Exiguobacterium sibiricum Exiguobacterium sibiricum 255-15 262719 core Mycoplasma hyopneumoniae J Mycoplasma hyopneumoniae J 262723 periphery Mycoplasma synoviae Mycoplasma synoviae 53 262724 core Thermus thermophilus HB27 Thermus thermophilus HB27 262768 periphery Phytoplasma onion yellows Onion yellows phytoplasma OY-M 263358 core Verrucosispora maris Verrucosispora maris AB-18-032 263815 core Pneumocystis murina Pneumocystis murina 263820 core Picrophilus torridus Picrophilus torridus DSM9790 264198 periphery Ralstonia eutropha JMP134 Ralstonia eutropha JMP134 264199 periphery Streptococcus thermophilus LMG18311 Streptococcus thermophilus LMG 18311 264201 core Protochlamydia amoebophila Candidatus Protochlamydia amoebophila UWE25 264202 periphery Chlamydophila felis Chlamydophila felis Fe/C-56 264203 periphery Zymomonas mobilis ZM4 Zymomonas mobilis subsp. mobilis ZM4 264402 periphery Capsella grandiflora Capsella grandiflora 264462 core Bdellovibrio bacteriovorus HD100 Bdellovibrio bacteriovorus HD100 264730 core Pseudomonas syringae phaseolicola Pseudomonas syringae pv. phaseolicola 1448A 264731 core Prevotella ruminicola Prevotella ruminicola 23 264732 core Moorella thermoacetica Moorella thermoacetica ATCC39073 264951 periphery Byssochlamys spectabilis Byssochlamys spectabilis 265072 core Methylobacillus flagellatus Methylobacillus flagellatus KT 265311 core Mesoplasma florum Mesoplasma florum L1 265729 periphery Bacillus cibi Bacillus cibi 266117 core Rubrobacter xylanophilus Rubrobacter xylanophilus DSM9941 266264 periphery Cupriavidus metallidurans Cupriavidus metallidurans CH34 266265 periphery Burkholderia xenovorans Burkholderia xenovorans LB400 266748 periphery Chryseobacterium antarcticum Chryseobacterium antarcticum 266762 periphery Porphyromonas gingivicanis Porphyromonas gingivicanis 266779 core Chelativorans sp. BNC1 Chelativorans sp. BNC1 266809 core Thalassobacter stenotrophicus Thalassobacter stenotrophicus 266834 core Sinorhizobium meliloti Sinorhizobium meliloti 1021 266835 core Mesorhizobium loti MAFF303099 Mesorhizobium loti MAFF303099 266940 core Kineococcus radiotolerans Kineococcus radiotolerans SRS30216 267377 periphery Methanococcus maripaludis S2 Methanococcus maripaludis S2 267608 core Ralstonia solanacearum GMI1000 Ralstonia solanacearum GMI1000 267747 core Propionibacterium acnes KPA171202 Propionibacterium acnes KPA171202 267748 periphery Mycoplasma mobile Mycoplasma mobile 163K 268407 periphery Paenibacillus wynnii Paenibacillus wynnii 268739 periphery Natronomonas moolapensis Natronomonas moolapensis 8.8.11 269084 core Synechococcus elongatus PCC6301 Synechococcus elongatus PCC6301 269482 periphery Burkholderia vietnamiensis Burkholderia vietnamiensis G4 269484 periphery Ehrlichia canis Ehrlichia canis str. Jake 269796 core Rhodospirillum rubrum Rhodospirillum rubrum ATCC11170 269797 core Methanosarcina barkeri Methanosarcina barkeri str. Fusaro 269798 core Cytophaga hutchinsonii Cytophaga hutchinsonii ATCC33406 269799 core Geobacter metallireducens Geobacter metallireducens GS-15 269800 core Thermobifida fusca Thermobifida fusca YX 270374 periphery Marinobacter sp. ELB17 Marinobacter sp. ELB17 272123 periphery Anabaena cylindrica Anabaena cylindrica PCC7122 272134 periphery Leptolyngbya boryana Leptolyngbya boryana PCC6306 272556 periphery Aggregatibacter actinomycetemcomitans HK1651 Aggregatibacter actinomycetemcomitans HK1651 272557 core Aeropyrum pernix Aeropyrum pernix K1 272558 periphery Bacillus halodurans Bacillus halodurans C-125 272559 core Bacteroides fragilis NCTC 9343 Bacteroides fragilis NCTC 9343 272560 core Burkholderia pseudomallei K96243 Burkholderia pseudomallei K96243 272562 core Clostridium acetobutylicum Clostridium acetobutylicum ATCC824 272563 core Peptoclostridium difficile 630 Peptoclostridium difficile 630 272568 core Gluconacetobacter diazotrophicus Gluconacetobacter diazotrophicus PA1 5 272569 periphery Haloarcula marismortui Haloarcula marismortui ATCC43049 272621 periphery Lactobacillus acidophilus NCFM Lactobacillus acidophilus NCFM 272623 core Lactococcus lactis Il1403 Lactococcus lactis subsp. lactis Il1403 272624 core Legionella pneumophila Philadelphia Legionella pneumophila subsp. pneumophila str. Philadelphia 1 272626 core Listeria innocua Listeria innocua Clip11262 272630 core Methylobacterium extorquens AM1 Methylobacterium extorquens AM1 272631 periphery Mycobacterium leprae Mycobacterium leprae TN 272632 periphery Mycoplasma mycoides Mycoplasma mycoides subsp. mycoides SC str. PG1 272633 periphery Mycoplasma penetrans Mycoplasma penetrans HF-2 272635 periphery Mycoplasma pulmonis Mycoplasma pulmonis UAB CTIP 272844 core Pyrococcus abyssi Pyrococcus abyssi GE5 272942 periphery Rhodobacter capsulatus Rhodobacter capsulatus SB 1003 272943 periphery Rhodobacter sphaeroides 241 Rhodobacter sphaeroides 2.4.1 272947 periphery Rickettsia prowazekii Rickettsia prowazekii str. Madrid E 272951 core Rickettsia sibirica Rickettsia sibirica 246 272952 core Hyaloperonospora arabidopsidis Hyaloperonospora arabidopsidis 273057 core Sulfolobus solfataricus Sulfolobus solfataricus P2 273063 periphery Sulfolobus tokodaii Sulfolobus tokodaii str. 7 273068 core Caldanaerobacter subterraneus Caldanaerobacter subterraneus subsp. tengcongensis MB4 273075 periphery Thermoplasma acidophilum Thermoplasma acidophilum DSM1728 273116 core Thermoplasma volcanium Thermoplasma volcanium GSS1 273119 core Ureaplasma parvum Ureaplasma parvum serovar 3 str. ATCC700970 273121 core Wolinella succinogenes Wolinella succinogenes DSM1740 273371 periphery Candida orthopsilosis Candida orthopsilosis 273526 core Serratia marcescens Db11 Serratia marcescens subsp. marcescens Db11 273677 periphery Microbacterium oleivorans Microbacterium oleivorans 278197 periphery Pediococcus pentosaceus Pediococcus pentosaceus ATCC25745 278957 periphery Diplosphaera colitermitum Diplosphaera colitermitum TAV2 278963 core Acidobacteriaceae bacterium TAA166 Acidobacteriaceae bacterium TAA166 279010 core Bacillus licheniformis Bacillus licheniformis DSM13 279238 periphery Novosphingobium aromaticivorans Novosphingobium aromaticivorans DSM12444 279714 core Pseudogulbenkiania ferrooxidans Pseudogulbenkiania ferrooxidans 2002 279808 periphery Staphylococcus haemolyticus Staphylococcus haemolyticus JCSC1435 281090 core Leifsonia xyli CTCB07 Leifsonia xyli subsp. xyli str. CTCB07 281687 periphery Caenorhabditis japonica Caenorhabditis japonica 283165 periphery Bartonella quintana Bartonella quintana str. Toulouse 283166 core Bartonella henselae Bartonella henselae str. Houston-1 283699 core Pseudoalteromonas sp. Bsw20308 Pseudoalteromonas sp. Bsw20308 283942 core Idiomarina loihiensis Idiomarina loihiensis L2TR 284031 periphery Streptomyces flavovariabilis Streptomyces flavovariabilis 285514 periphery Streptomyces xylophagus Streptomyces xylophagus 285535 periphery Streptomyces fulvoviolaceus Streptomyces fulvoviolaceus 287986 periphery Amycolatopsis rifamycinica Amycolatopsis rifamycinica 288000 periphery Bradyrhizobium sp. BTAi1 Bradyrhizobium sp. BTAi1 288705 core Renibacterium salmoninarum Renibacterium salmoninarum ATCC33209 289376 core Thermodesulfovibrio yellowstonii Thermodesulfovibrio yellowstonii DSM11347 289377 periphery Thermodesulfobacterium commune Thermodesulfobacterium commune DSM2178 289397 periphery Mycoplasma bovis Mycoplasma bovis PG45 290315 periphery Chlorobium limicola Chlorobium limicola DSM245 290317 periphery Chlorobium phaeobacteroides DSM266 Chlorobium phaeobacteroides DSM266 290318 periphery Chlorobium phaeovibrioides Chlorobium phaeovibrioides DSM265 290340 periphery Arthrobacter aurescens Arthrobacter aurescens TC1 290397 core Anaeromyxobacter dehalogenans Anaeromyxobacter dehalogenans 2CP-C 290398 core Chromohalobacter salexigens Chromohalobacter salexigens DSM3043 290399 periphery Arthrobacter sp. FB24 Arthrobacter sp. FB24 290400 core Jannaschia sp. CCS1 Jannaschia sp. CCS1 290402 core Clostridium beijerinckii Clostridium beijerinckii NCIMB 8052 290434 periphery Borrelia garinii Borrelia garinii PBi 290512 core Prosthecochloris aestuarii Prosthecochloris aestuarii DSM271 290633 core Gluconobacter oxydans 621H Gluconobacter oxydans 621H 291112 core Photorhabdus asymbiotica Photorhabdus asymbiotica 291272 periphery Blochmannia pennsylvanicus Candidatus Blochmannia pennsylvanicus str. BPEN 291985 periphery Erythrobacter vulgaris Erythrobacter vulgaris 292414 core Ruegeria sp. TM1040 Ruegeria sp. TM1040 292415 core Thiobacillus denitrificans ATCC25259 Thiobacillus denitrificans ATCC25259 292459 core Symbiobacterium thermophilum Symbiobacterium thermophilum IAM 14863 292563 periphery Cyanobacterium stanieri Cyanobacterium stanieri PCC7202 292564 periphery Cyanobium gracile Cyanobium gracile PCC6307 292805 periphery Wolbachia sp. Bma Wolbachia endosymbiont strain TRS of Brugia malayi 293227 periphery Cyphellophora europaea Cyphellophora europaea 293613 periphery Rickettsia canadensis Rickettsia canadensis str. McKiel 293614 periphery Rickettsia akari Rickettsia akari str. Hartford 293826 core Alkaliphilus metalliredigens Alkaliphilus metalliredigens QYMF 295358 periphery Mycoplasma hyopneumoniae 232 Mycoplasma hyopneumoniae 232 296587 periphery Micromonas sp. RCC299 Micromonas sp. RCC299 296591 core Polaromonas sp. JS666 Polaromonas sp. JS666 297246 core Legionella pneumophila Paris Legionella pneumophila str. Paris 298386 core Photobacterium profundum Photobacterium profundum SS9 298653 core Frankia sp. EAN1pec Frankia sp. EAN1pec 298654 periphery Frankia sp. EuI1c Frankia sp. EuI1c 298655 periphery Frankia sp. CN3 Frankia sp. CN3 300852 periphery Thermus thermophilus HB8 Thermus thermophilus HB8 303518 periphery Pundamilia nyererei Pundamilia nyererei 304371 periphery Methanocella paludicola Methanocella paludicola SANAE 305700 core Thauera sp. 27 Thauera sp. 27 305900 periphery Endozoicomonas elysicola Endozoicomonas elysicola 306263 periphery Campylobacter lari Campylobacter lari RM2100 306264 periphery Campylobacter upsaliensis Campylobacter upsaliensis RM3195 306281 periphery Fischerella muscicola Fischerella muscicola PCC7414 306537 periphery Corynebacterium jeikeium Corynebacterium jeikeium K411 307480 core Chryseobacterium vrystaatense Chryseobacterium vrystaatense 309798 periphery Coprothermobacter proteolyticus Coprothermobacter proteolyticus DSM5265 309799 core Dictyoglomus thermophilum Dictyoglomus thermophilum H-6-12 309800 periphery Haloferax volcanii Haloferax volcanii DS2 309801 periphery Thermomicrobium roseum Thermomicrobium roseum DSM5159 309803 periphery Thermotoga neapolitana Thermotoga neapolitana DSM4359 309807 periphery Salinibacter ruber Salinibacter ruber DSM13855 310453 core Neofusicoccum parvum Neofusicoccum parvum 311402 periphery Agrobacterium vitis Agrobacterium vitis S4 311403 periphery Agrobacterium radiobacter Agrobacterium radiobacter K84 311424 periphery Dehalococcoides mccartyi VS Dehalococcoides mccartyi VS 312153 core Polynucleobacter necessarius asymbioticus Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 312284 periphery actinobacterium PHSC20C1 marine actinobacterium PHSC20C1 312309 core Vibrio fischeri Vibrio fischeri ES114 313589 core Janibacter sp. HTCC2649 Janibacter sp. HTCC2649 313590 core Dokdonia sp. MED134 Dokdonia sp. MED134 313594 periphery Polaribacter irgensii Polaribacter irgensii 23-P 313595 core Psychroflexus torquis Psychroflexus torquis ATCC700755 313596 core Robiginitalea biformata Robiginitalea biformata HTCC2501 313598 core Polaribacter sp. MED152 Polaribacter sp. MED152 313603 core Maribacter sp. HTCC2170 Maribacter sp. HTCC2170 313606 core Microscilla marina Microscilla marina ATCC23134 313612 core Lyngbya sp. PCC8106 Lyngbya sp. PCC8106 313624 periphery Nodularia spumigena Nodularia spumigena CCY9414 313625 periphery Synechococcus sp. BL107 Synechococcus sp. BL107 313628 core Lentisphaera araneosa Lentisphaera araneosa HTCC2155 314225 periphery Erythrobacter litoralis Erythrobacter litoralis HTCC2594 314230 core Blastopirellula marina Blastopirellula marina DSM3645 314231 core Fulvimarina pelagi Fulvimarina pelagi HTCC2506 314232 core Loktanella vestfoldensis SKA53 Loktanella vestfoldensis SKA53 314254 core Oceanicaulis sp. HTCC2633 Oceanicaulis sp. HTCC2633 314256 periphery Oceanicola granulosus Oceanicola granulosus HTCC2516 314260 core Parvularcula bermudensis Parvularcula bermudensis HTCC2503 314262 core Roseobacter sp. MED193 Roseobacter sp. MED193 314264 core Roseovarius sp. 217 Roseovarius sp. 217 314265 core Pelagibaca bermudensis Pelagibaca bermudensis HTCC2601 314266 periphery Sphingomonas sp. SKA58 Sphingomonas sp. SKA58 314270 periphery Rhodobacteraceae bacterium HTCC2083 Rhodobacteraceae bacterium HTCC2083 314271 core Maritimibacter alkaliphilus Maritimibacter alkaliphilus HTCC2654 314275 core Alteromonas macleodii Deep Alteromonas macleodii str. 'Deep ecotype' 314278 core Nitrococcus mobilis Nitrococcus mobilis Nb-231 314282 periphery Psychromonas sp. CNPT3 Psychromonas sp. CNPT3 314285 core Congregibacter litoralis Congregibacter litoralis KT71 314287 periphery Gammaproteobacteria bacterium HTCC2207 gamma proteobacterium HTCC2207 314292 core Photobacterium angustum Photobacterium angustum S14 314315 periphery Lactobacillus sakei Lactobacillus sakei subsp. sakei 23K 314345 core Mariprofundus ferrooxydans Mariprofundus ferrooxydans PV-1 314607 periphery beta proteobacterium KB13 beta proteobacterium KB13 314723 periphery Borrelia hermsii Borrelia hermsii HS1 314724 periphery Borrelia turicatae Borrelia turicatae 91E135 315456 periphery Rickettsia felis Rickettsia felis URRWXCal2 315730 periphery Bacillus weihenstephanensis Bacillus weihenstephanensis KBAB4 315749 periphery Bacillus cytotoxicus Bacillus cytotoxicus NVH 391-98 315750 core Bacillus pumilus Bacillus pumilus SAFR-032 316055 periphery Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris BisA53 316056 periphery Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB18 316057 periphery Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisB5 316058 periphery Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris HaA2 316067 periphery Geobacter daltonii Geobacter daltonii FRC-32 316273 periphery Xanthomonas campestris vesicatoria Xanthomonas campestris pv. vesicatoria str. 85-10 316274 core Herpetosiphon aurantiacus Herpetosiphon aurantiacus DSM785 316275 periphery Aliivibrio salmonicida Aliivibrio salmonicida LFI1238 316278 periphery Synechococcus sp. RCC307 Synechococcus sp. RCC307 316279 periphery Synechococcus sp. CC9902 Synechococcus sp. CC9902 316407 periphery Escherichia coli K12 W3110 Escherichia coli str. K-12 substr. W3110 317013 periphery Xanthomonas axonopodis phaseoli Xanthomonas axonopodis pv. phaseoli 317025 core Thiomicrospira crunogena Thiomicrospira crunogena XCL-2 317619 core Prochlorothrix hollandica Prochlorothrix hollandica PCC9006 317655 core Sphingopyxis alaskensis Sphingopyxis alaskensis RB2256 317936 periphery Nostoc sp. PCC7107 Nostoc sp. PCC7107 318161 periphery Shewanella denitrificans Shewanella denitrificans OS217 318167 periphery Shewanella frigidimarina Shewanella frigidimarina NCIMB 400 318424 periphery Mycobacterium rufum Mycobacterium rufum 318464 periphery Clostridium sulfidigenes Clostridium sulfidigenes 318586 core Paracoccus denitrificans Paracoccus denitrificans PD1222 318829 core Magnaporthe oryzae Magnaporthe oryzae 318996 periphery Bradyrhizobium sp. WSM1743 Bradyrhizobium sp. WSM1743 319003 periphery Bradyrhizobium sp. WSM1253 Bradyrhizobium sp. WSM1253 319224 core Shewanella putrefaciens Shewanella putrefaciens CN-32 319225 periphery Chlorobium luteolum Chlorobium luteolum DSM273 319236 periphery Nonlabens sediminis Nonlabens sediminis 319795 core Deinococcus geothermalis Deinococcus geothermalis DSM11300 320483 periphery Anaplasma marginale Florida Anaplasma marginale str. Florida 321327 core Synechococcus sp. JA33Ab Synechococcus sp. JA-3-3Ab 321332 periphery Synechococcus sp. JA23Ba Synechococcus sp. JA-2-3Ba(2-13) 321846 periphery Pseudomonas simiae Pseudomonas simiae 321955 periphery Brevibacterium linens Brevibacterium linens BL2 321961 core Phytoplasma wheat blue Wheat blue dwarf phytoplasma 322098 periphery Phytoplasma aster yellows Aster yellows witches'-broom phytoplasma AYWB 322159 periphery Streptococcus thermophilus LMD9 Streptococcus thermophilus LMD-9 322710 core Azotobacter vinelandii Azotobacter vinelandii DJ 323097 core Nitrobacter hamburgensis Nitrobacter hamburgensis X14 323098 periphery Nitrobacter winogradskyi Nitrobacter winogradskyi Nb-255 323259 periphery Methanospirillum hungatei Methanospirillum hungatei JF-1 323261 core Nitrosococcus oceani Nitrosococcus oceani ATCC19707 323848 core Nitrosospira multiformis Nitrosospira multiformis ATCC25196 323850 periphery Shewanella loihica Shewanella loihica PV-4 324057 periphery Paenibacillus sp. JDR2 Paenibacillus sp. JDR-2 324602 periphery Chloroflexus aurantiacus Chloroflexus aurantiacus J-10-fl 324831 periphery Lactobacillus gasseri Lactobacillus gasseri ATCC33323 324925 core Pelodictyon phaeoclathratiforme Pelodictyon phaeoclathratiforme BU-1 325452 periphery Phytophthora kernoviae Phytophthora kernoviae 325777 periphery Xanthomonas axonopodis vasculorum Xanthomonas axonopodis pv. vasculorum 326297 periphery Shewanella amazonensis Shewanella amazonensis SB2B 326298 core Sulfurimonas denitrificans Sulfurimonas denitrificans DSM1251 326423 periphery Bacillus amyloliquefaciens Bacillus amyloliquefaciens subsp. plantarum str. FZB42 326424 periphery Frankia alni Frankia alni ACN14a 326425 periphery Lactobacillus helveticus CNRZ32 Lactobacillus helveticus CNRZ32 326426 periphery Bifidobacterium breve Bifidobacterium breve UCC2003 326427 periphery Chloroflexus aggregans Chloroflexus aggregans DSM9485 326442 core Pseudoalteromonas haloplanktis TAC125 Pseudoalteromonas haloplanktis TAC125 327079 periphery Pseudozyma hubeiensis Pseudozyma hubeiensis 327277 periphery Bifidobacterium crudilactis Bifidobacterium crudilactis 329726 core Acaryochloris marina Acaryochloris marina MBIC11017 330084 periphery Amycolatopsis jejuensis Amycolatopsis jejuensis 330214 core Nitrospira defluvii Candidatus Nitrospira defluvii 330779 periphery Sulfolobus acidocaldarius Sulfolobus acidocaldarius DSM639 331104 core Blattabacterium sp. Bge Blattabacterium sp. (Blattella germanica) 331113 core Simkania negevensis Simkania negevensis Z 331635 periphery Chlamydophila pecorum Chlamydophila pecorum E58 331636 core Chlamydia psittaci 6BC Chlamydia psittaci 6BC 331678 periphery Chlorobium phaeobacteroides BS1 Chlorobium phaeobacteroides BS1 331869 periphery alpha proteobacterium BAL199 alpha proteobacterium BAL199 332101 periphery Clostridium drakei Clostridium drakei 333138 periphery Bacillus okhensis Bacillus okhensis 334390 periphery Lactobacillus fermentum IFO3956 Lactobacillus fermentum IFO 3956 334413 core Finegoldia magna ATCC29328 Finegoldia magna ATCC29328 334545 core Rickettsia tamurae Rickettsia tamurae 335283 core Nitrosomonas eutropha Nitrosomonas eutropha C91 335284 core Psychrobacter cryohalolentis Psychrobacter cryohalolentis K5 335541 periphery Syntrophomonas wolfei Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 335543 core Syntrophobacter fumaroxidans Syntrophobacter fumaroxidans MPOB 335659 periphery Bradyrhizobium sp. S23321 Bradyrhizobium sp. S23321 335992 periphery Pelagibacter ubique HTCC1062 Candidatus Pelagibacter ubique HTCC1062 336407 periphery Rickettsia bellii RML369C Rickettsia bellii RML369-C 337075 core Pyronema omphalodes Pyronema omphalodes 337191 periphery Gordonia sp. KTR9 Gordonia sp. KTR9 338963 core Pelobacter carbinolicus Pelobacter carbinolicus DSM2380 338966 periphery Pelobacter propionicus Pelobacter propionicus DSM2379 338969 core Rhodoferax ferrireducens Rhodoferax ferrireducens T118 339670 periphery Burkholderia ambifaria Burkholderia ambifaria AMMD 339671 periphery Actinobacillus succinogenes Actinobacillus succinogenes 130Z 339860 core Methanosphaera stadtmanae Methanosphaera stadtmanae DSM3091 340099 periphery Thermoanaerobacter pseudethanolicus Thermoanaerobacter pseudethanolicus ATCC33223 340170 periphery Spathaspora passalidarum Spathaspora passalidarum 340177 core Chlorobium chlorochromatii Chlorobium chlorochromatii CaD3 342113 periphery Burkholderia oklahomensis Burkholderia oklahomensis 342451 core Staphylococcus saprophyticus Staphylococcus saprophyticus subsp. saprophyticus ATCC15305 342610 core Pseudoalteromonas atlantica Pseudoalteromonas atlantica T6c 342949 core Pyrococcus sp. NA2 Pyrococcus sp. NA2 343509 core Sodalis glossinidius Sodalis glossinidius str. 'morsitans' 344747 core Planctomyces maris Planctomyces maris DSM8797 345073 periphery Vibrio cholerae O395 Vibrio cholerae O395 345219 periphery Bacillus coagulans 36D1 Bacillus coagulans 36D1 345341 periphery Kutzneria sp. 744 Kutzneria sp. 744 347256 core Mycoplasma hominis Mycoplasma hominis ATCC23114 347834 periphery Rhizobium etli CFN42 Rhizobium etli CFN 42 348780 core Natronomonas pharaonis Natronomonas pharaonis DSM2160 348824 periphery Rhizobium sp. LPU83 Rhizobium sp. LPU83 349102 core Rhodobacter sphaeroides ATCC17025 Rhodobacter sphaeroides ATCC17025 349106 periphery Psychrobacter sp. PRwf1 Psychrobacter sp. PRwf-1 349123 periphery Lactobacillus reuteri 10023 Lactobacillus reuteri 100-23 349124 core Halorhodospira halophila Halorhodospira halophila SL1 349161 periphery Desulfotomaculum reducens Desulfotomaculum reducens MI-1 349163 core Acidiphilium cryptum Acidiphilium cryptum JF-5 349519 periphery Leuconostoc citreum Leuconostoc citreum KM20 349520 periphery Paenibacillus polymyxa E681 Paenibacillus polymyxa E681 349521 core Hahella chejuensis Hahella chejuensis KCTC 2396 349741 core Akkermansia muciniphila Akkermansia muciniphila ATCC BAA-835 349965 periphery Yersinia intermedia Yersinia intermedia ATCC29909 349966 periphery Yersinia frederiksenii Yersinia frederiksenii ATCC33641 350054 periphery Mycobacterium gilvum Mycobacterium gilvum PYR-GCK 350058 periphery Mycobacterium vanbaalenii Mycobacterium vanbaalenii PYR-1 350688 periphery Alkaliphilus oremlandii Alkaliphilus oremlandii OhILAs 351016 core Roseobacter sp. AzwK3b Roseobacter sp. AzwK-3b 351160 periphery Methanocella arvoryzae Methanocella arvoryzae MRE50 351348 core Marinobacter hydrocarbonoclasticus Marinobacter hydrocarbonoclasticus VT8 351607 core Acidothermus cellulolyticus Acidothermus cellulolyticus 11B 351627 periphery Caldicellulosiruptor saccharolyticus Caldicellulosiruptor saccharolyticus DSM8903 351746 core Pseudomonas putida F1 Pseudomonas putida F1 352165 core Pyramidobacter piscolens Pyramidobacter piscolens W5455 353496 periphery Lactobacillus delbrueckii 2038 Lactobacillus delbrueckii subsp. bulgaricus 2038 354242 periphery Campylobacter jejuni 81176 Campylobacter jejuni subsp. jejuni 81-176 356829 periphery Bifidobacterium tsurumiense Bifidobacterium tsurumiense 356851 periphery Micromonospora chokoriensis Micromonospora chokoriensis 357244 core Orientia tsutsugamushi Orientia tsutsugamushi str. Boryong 357276 core Bacteroides dorei Bacteroides dorei 357804 core Psychromonas ingrahamii Psychromonas ingrahamii 37 357808 core Roseiflexus sp. RS1 Roseiflexus sp. RS-1 357809 periphery Lachnoclostridium phytofermentans Lachnoclostridium phytofermentans ISDg 358220 periphery Acidovorax sp. KKS102 Acidovorax sp. KKS102 358396 periphery Halobiforma lacisalsi Halobiforma lacisalsi AJ5 358681 core Brevibacillus brevis NBRC100599 Brevibacillus brevis NBRC 100599 358823 periphery Streptomyces olindensis Streptomyces olindensis 360094 periphery Xanthomonas oryzae PXO99A Xanthomonas oryzae pv. oryzae PXO99A 360095 core Bartonella bacilliformis Bartonella bacilliformis KC583 360104 periphery Campylobacter concisus 13826 Campylobacter concisus 13826 360106 periphery Campylobacter fetus 8240 Campylobacter fetus subsp. fetus 82-40 360107 periphery Campylobacter hominis Campylobacter hominis ATCC BAA-381 360910 periphery Bordetella avium Bordetella avium 197N 360911 core Exiguobacterium sp. AT1b Exiguobacterium sp. AT1b 362242 periphery Mycobacterium ulcerans Mycobacterium ulcerans Agy99 362418 periphery Flavobacterium reichenbachii Flavobacterium reichenbachii 362663 periphery Escherichia coli 536 Escherichia coli 536 362976 core Haloquadratum walsbyi DSM16790 Haloquadratum walsbyi DSM16790 363253 core Lawsonia intracellularis Lawsonia intracellularis PHE/MN1-00 364733 periphery Endocarpon pusillum Endocarpon pusillum 365044 periphery Polaromonas naphthalenivorans Polaromonas naphthalenivorans CJ2 365046 core Ramlibacter tataouinensis Ramlibacter tataouinensis TTB310 365528 core Frankia sp. BCU110501 Frankia sp. BCU110501 365659 periphery Streptococcus mitis B6 Streptococcus mitis B6 366394 core Sinorhizobium medicae Sinorhizobium medicae WSM419 366602 core Caulobacter sp. K31 Caulobacter sp. K31 366649 periphery Xanthomonas fuscans Xanthomonas fuscans subsp. fuscans 367299 periphery Phycicoccus jejuensis Phycicoccus jejuensis 367336 periphery Rhodobacterales bacterium HTCC2255 Rhodobacterales bacterium HTCC2255 367737 core Arcobacter butzleri RM4018 Arcobacter butzleri RM4018 368407 periphery Methanoculleus marisnigri Methanoculleus marisnigri JR1 368408 core Thermofilum pendens Thermofilum pendens Hrk 5 369723 core Salinispora tropica Salinispora tropica CNB-440 370438 core Pelotomaculum thermopropionicum Pelotomaculum thermopropionicum SI 371042 periphery Erwinia typographi Erwinia typographi 371731 core Rhodobacter sp. SW2 Rhodobacter sp. SW2 372461 periphery Buchnera aphidicola BCc Buchnera aphidicola str. BCc 373153 core Streptococcus pneumoniae D39 Streptococcus pneumoniae D39 373903 core Halothermothrix orenii Halothermothrix orenii H 168 373994 periphery Rivularia sp. PCC7116 Rivularia sp. PCC7116 374847 core Korarchaeum cryptofilum Candidatus Korarchaeum cryptofilum OPF8 375286 core Janthinobacterium sp. Marseille Janthinobacterium sp. Marseille 375451 periphery Roseobacter denitrificans Roseobacter denitrificans OCh 114 376619 core Francisella tularensis holarctica Francisella tularensis subsp. holarctica LVS 376686 core Flavobacterium johnsoniae Flavobacterium johnsoniae UW101 376733 periphery Paracoccus halophilus Paracoccus halophilus 377629 core Teredinibacter turnerae T7901 Teredinibacter turnerae T7901 378753 core Kocuria rhizophila DC2201 Kocuria rhizophila DC2201 378806 core Stigmatella aurantiaca Stigmatella aurantiaca DW4/3-1 379066 core Gemmatimonas aurantiaca Gemmatimonas aurantiaca T-27 379731 core Pseudomonas stutzeri A1501 Pseudomonas stutzeri A1501 380358 periphery Xanthomonas albilineans Xanthomonas albilineans GPE PC73 380394 periphery Acidithiobacillus ferrooxidans ATCC53993 Acidithiobacillus ferrooxidans ATCC53993 380703 periphery Aeromonas hydrophila ATCC7966 Aeromonas hydrophila subsp. hydrophila ATCC7966 380749 periphery Hydrogenobaculum sp. Y04AAS1 Hydrogenobaculum sp. Y04AAS1 381046 core Lachancea thermotolerans Lachancea thermotolerans 381666 core Ralstonia eutropha H16 Ralstonia eutropha H16 381764 periphery Fervidobacterium nodosum Fervidobacterium nodosum Rt17-B1 382245 core Aeromonas salmonicida Aeromonas salmonicida subsp. salmonicida A449 382464 periphery Verrucomicrobiae bacterium DG1235 Verrucomicrobiae bacterium DG1235 382638 periphery Helicobacter acinonychis Helicobacter acinonychis str. Sheeba 382640 core Bartonella tribocorum Bartonella tribocorum CIP 105476 383372 periphery Roseiflexus castenholzii Roseiflexus castenholzii DSM13941 383381 periphery Erythrobacter sp. JL475 Erythrobacter sp. JL475 383407 core Xanthomonas oryzae oryzicola Xanthomonas oryzae pv. oryzicola BLS256 384616 periphery Pyrobaculum islandicum Pyrobaculum islandicum DSM4184 384676 periphery Pseudomonas entomophila Pseudomonas entomophila L48 384765 core Labrenzia aggregata Labrenzia aggregata IAM 12614 385682 core Thermophagus xiamenensis Thermophagus xiamenensis 386043 core Listeria welshimeri Listeria welshimeri serovar 6b str. SLCC5334 386415 core Clostridium novyi NT Clostridium novyi NT 386456 periphery Methanobacterium arcticum Methanobacterium arcticum 387092 core Nitratiruptor sp. SB1552 Nitratiruptor sp. SB155-2 387093 core Sulfurovum sp. NBC371 Sulfurovum sp. NBC37-1 387344 periphery Lactobacillus brevis ATCC367 Lactobacillus brevis ATCC367 387631 periphery Archaeoglobus sulfaticallidus Archaeoglobus sulfaticallidus PM70-1 388051 periphery Cupriavidus sp. amp6 Cupriavidus sp. amp6 388399 core Sagittula stellata Sagittula stellata E-37 388401 periphery Rhodobacteraceae bacterium HTCC2150 Rhodobacteraceae bacterium HTCC2150 388413 core Algoriphagus machipongonensis Algoriphagus machipongonensis 388467 core Planktothrix agardhii Planktothrix agardhii NIVA-CYA 126/8 388739 periphery Roseobacter sp. SK20926 Roseobacter sp. SK209-2-6 388919 periphery Streptococcus sanguinis SK36 Streptococcus sanguinis SK36 390235 periphery Pseudomonas putida W619 Pseudomonas putida W619 390236 core Borrelia afzelii Borrelia afzelii PKo 390333 periphery Lactobacillus delbrueckii ATCC11842 Lactobacillus delbrueckii subsp. bulgaricus ATCC11842 390874 periphery Thermotoga petrophila Thermotoga petrophila RKU-1 390989 periphery Actinocatenispora sera Actinocatenispora sera 391008 core Stenotrophomonas maltophilia R5513 Stenotrophomonas maltophilia R551-3 391009 periphery Thermosipho melanesiensis Thermosipho melanesiensis BI429 391036 periphery Ehrlichia sp. HF Ehrlichia sp. HF 391037 periphery Salinispora arenicola Salinispora arenicola CNS-205 391038 periphery Burkholderia phymatum Burkholderia phymatum STM815 391165 core Granulibacter bethesdensis Granulibacter bethesdensis CGDNIH1 391295 periphery Streptococcus suis 05ZYH33 Streptococcus suis 05ZYH33 391587 core Kordia algicida Kordia algicida OT-1 391589 periphery Roseobacter sp. GAI101 Roseobacter sp. GAI101 391593 periphery Roseobacter sp. CCS2 Roseobacter sp. CCS2 391595 periphery Roseobacter litoralis Roseobacter litoralis Och 149 391596 core Pedobacter sp. BAL39 Pedobacter sp. BAL39 391598 periphery Flavobacteria bacterium BAL38 Flavobacteria bacterium BAL38 391600 core Brevundimonas sp. BAL3 Brevundimonas sp. BAL3 391603 core Flavobacteriales bacterium ALC1 Flavobacteriales bacterium ALC-1 391612 periphery Cyanothece sp. CCY0110 Cyanothece sp. CCY0110 391613 core Roseovarius sp. TM1035 Roseovarius sp. TM1035 391615 periphery Gammaproteobacteria bacterium HTCC5015 gamma proteobacterium HTCC5015 391616 core Octadecabacter arcticus Octadecabacter arcticus 238 391619 core Phaeobacter inhibens Phaeobacter inhibens DSM17395 391623 periphery Thermococcus barophilus Thermococcus barophilus MP 391624 core Oceanibulbus indolifex Oceanibulbus indolifex HEL-45 391625 periphery Plesiocystis pacifica Plesiocystis pacifica SIR-1 391626 periphery Octadecabacter antarcticus Octadecabacter antarcticus 307 391735 core Verminephrobacter eiseniae Verminephrobacter eiseniae EF01-2 391896 periphery Rickettsia bellii OSU85389 Rickettsia bellii OSU 85-389 391937 core Nitratireductor pacificus Nitratireductor pacificus pht-3B 392499 core Sphingomonas wittichii Sphingomonas wittichii RW1 392500 periphery Shewanella woodyi Shewanella woodyi ATCC51908 393283 periphery Pestalotiopsis fici Pestalotiopsis fici 393305 core Yersinia enterocolitica 8081 Yersinia enterocolitica subsp. enterocolitica 8081 393480 core Fusobacterium nucleatum polymorphum Fusobacterium nucleatum subsp. polymorphum ATCC10953 393595 core Alcanivorax borkumensis Alcanivorax borkumensis SK2 393921 periphery Porphyromonas crevioricanis Porphyromonas crevioricanis 394221 core Maricaulis maris Maricaulis maris MCS10 394503 core Clostridium cellulolyticum Clostridium cellulolyticum H10 395019 periphery Burkholderia multivorans Burkholderia multivorans ATCC17616 395492 periphery Rhizobium leguminosarum WSM2304 Rhizobium leguminosarum bv. trifolii WSM2304 395493 periphery Beggiatoa alba Beggiatoa alba B18LD 395494 periphery Gallionella capsiferriformans Gallionella capsiferriformans ES-2 395495 core Leptothrix cholodnii Leptothrix cholodnii SP-6 395961 periphery Cyanothece sp. PCC7425 Cyanothece sp. PCC7425 395963 core Beijerinckia indica Beijerinckia indica subsp. indica ATCC9039 395964 periphery Methylocapsa acidiphila Methylocapsa acidiphila B2 395965 core Methylocella silvestris Methylocella silvestris BL2 396014 core Brachybacterium phenoliresistens Brachybacterium phenoliresistens 396513 core Staphylococcus carnosus Staphylococcus carnosus subsp. carnosus TM300 396588 periphery Thioalkalivibrio sulfidiphilus Thioalkalivibrio sulfidiphilus HL-EbGr7 396595 core Thioalkalivibrio sp. K90mix Thioalkalivibrio sp. K90mix 397278 periphery Marmoricola aequoreus Marmoricola aequoreus 397287 periphery Lachnospiraceae bacterium 284 Lachnospiraceae bacterium 28-4 397288 periphery Lachnospiraceae bacterium 31 Lachnospiraceae bacterium 3-1 397290 periphery Lachnospiraceae bacterium A2 Lachnospiraceae bacterium A2 397291 periphery Lachnospiraceae bacterium A4 Lachnospiraceae bacterium A4 397945 periphery Acidovorax citrulli Acidovorax citrulli AAC00-1 397948 periphery Caldivirga maquilingensis Caldivirga maquilingensis IC-167 398511 periphery Bacillus pseudofirmus Bacillus pseudofirmus OF4 398512 core Pseudobacteroides cellulosolvens Pseudobacteroides cellulosolvens ATCC35603 398513 periphery Bifidobacterium bifidum NCIMB41171 Bifidobacterium bifidum NCIMB 41171 398525 periphery Bradyrhizobium elkanii USDA76 Bradyrhizobium elkanii USDA 76 398527 periphery Burkholderia phytofirmans Burkholderia phytofirmans PsJN 398578 core Delftia acidovorans Delftia acidovorans SPH-1 398579 periphery Shewanella pealeana Shewanella pealeana ATCC700345 398580 core Dinoroseobacter shibae Dinoroseobacter shibae DFL12 398720 core Leeuwenhoekiella blandensis Leeuwenhoekiella blandensis MED217 398767 periphery Geobacter lovleyi Geobacter lovleyi SZ 399549 periphery Metallosphaera sedula Metallosphaera sedula DSM5348 399550 core Staphylothermus marinus Staphylothermus marinus F1 399739 periphery Pseudomonas mendocina ymp Pseudomonas mendocina ymp 399741 core Serratia proteamaculans Serratia proteamaculans 568 399742 periphery Enterobacter sp. 638 Enterobacter sp. 638 399795 core Comamonas testosteroni KF1 Comamonas testosteroni KF-1 400668 core Marinomonas sp. MWYL1 Marinomonas sp. MWYL1 400682 core Amphimedon queenslandica Amphimedon queenslandica 401053 core Terriglobus saanensis Terriglobus saanensis SP1PR4 401473 periphery Bifidobacterium dentium Bifidobacterium dentium Bd1 401526 core Thermosinus carboxydivorans Thermosinus carboxydivorans Nor1 402612 periphery Flavobacterium psychrophilum Flavobacterium psychrophilum JIP02/86 402626 core Ralstonia pickettii 12J Ralstonia pickettii 12J 402777 core Kamptonema formosum Kamptonema formosum PCC6407 402880 periphery Methanococcus maripaludis C5 Methanococcus maripaludis C5 402881 core Parvibaculum lavamentivorans Parvibaculum lavamentivorans DS-1 403833 core Petrotoga mobilis Petrotoga mobilis SJ95 404380 periphery Geobacter bemidjiensis Geobacter bemidjiensis Bem 404589 periphery Anaeromyxobacter sp. Fw1095 Anaeromyxobacter sp. Fw109-5 405566 periphery Lactobacillus helveticus DPC4571 Lactobacillus helveticus DPC 4571 405948 core Saccharopolyspora erythraea Saccharopolyspora erythraea NRRL 2338 406124 periphery Bacillus sp. m313 Bacillus sp. m3-13 406327 core Methanococcus vannielii Methanococcus vannielii SB 406552 periphery Natrinema sp. J72 Natrinema sp. J7-2 406817 periphery Xenorhabdus nematophila Xenorhabdus nematophila ATCC19061 406818 core Xenorhabdus bovienii Xenorhabdus bovienii SS-2004 408672 periphery Nocardioidaceae bacterium Broad1 Nocardioidaceae bacterium Broad-1 410358 periphery Methanocorpusculum labreanum Methanocorpusculum labreanum Z 410359 periphery Pyrobaculum calidifontis Pyrobaculum calidifontis JCM 11548 411154 core Gramella forsetii Gramella forsetii KT0803 411459 periphery Ruminococcus obeum ATCC29174 Ruminococcus obeum ATCC29174 411460 periphery Ruminococcus torques ATCC27756 Ruminococcus torques ATCC27756 411461 core Dorea formicigenerans ATCC27755 Dorea formicigenerans ATCC27755 411462 core Dorea longicatena DSM13814 Dorea longicatena DSM13814 411463 core Eubacterium ventriosum Eubacterium ventriosum ATCC27560 411464 periphery Desulfovibrio piger Desulfovibrio piger ATCC29098 411465 core Parvimonas micra Parvimonas micra ATCC33270 411466 periphery Actinomyces odontolyticus Actinomyces odontolyticus ATCC17982 411467 core Pseudoflavonifractor capillosus Pseudoflavonifractor capillosus ATCC29799 411468 periphery Clostridium scindens [Clostridium] scindens ATCC35704 411469 core Eubacterium hallii [Eubacterium] hallii DSM3353 411470 periphery Ruminococcus gnavus Ruminococcus gnavus ATCC29149 411471 core Subdoligranulum variabile Subdoligranulum variabile DSM15176 411473 periphery Ruminococcus callidus Ruminococcus callidus ATCC27760 411474 core Coprococcus eutactus Coprococcus eutactus ATCC27759 411476 periphery Bacteroides ovatus Bacteroides ovatus ATCC8483 411477 core Parabacteroides merdae Parabacteroides merdae ATCC43184 411479 periphery Bacteroides uniformis Bacteroides uniformis ATCC8492 411483 core Faecalibacterium prausnitzii A2165 Faecalibacterium prausnitzii A2-165 411489 periphery Clostridium sp. L250 Clostridium sp. L2-50 411490 core Anaerostipes caccae Anaerostipes caccae DSM14662 411684 core Hoeflea phototrophica Hoeflea phototrophica DFL-43 411901 periphery Bacteroides caccae Bacteroides caccae ATCC43185 411902 periphery Clostridium bolteae [Clostridium] bolteae ATCC BAA-613 412419 periphery Borrelia duttonii Borrelia duttonii Ly 412597 periphery Paracoccus sp. TRP Paracoccus sp. TRP 412965 periphery Vesicomyosocius okutanii Candidatus Vesicomyosocius okutanii HA 413404 core Ruthia magnifica Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) 413816 periphery Halorubrum halophilum Halorubrum halophilum 414684 periphery Rhodospirillum centenum Rhodospirillum centenum SW 414996 core Actinopolyspora erythraea Actinopolyspora erythraea 415426 periphery Hyperthermus butylicus Hyperthermus butylicus DSM5456 416269 core Actinobacillus pleuropneumoniae 5b L20 Actinobacillus pleuropneumoniae serovar 5b str. L20 416348 core Halorubrum lacusprofundi Halorubrum lacusprofundi ATCC49239 416591 core Thermotoga lettingae Thermotoga lettingae TMO 416870 core Lactococcus lactis cremoris Lactococcus lactis subsp. cremoris MG1363 419610 core Methylobacterium extorquens PA1 Methylobacterium extorquens PA1 419665 core Methanococcus aeolicus Methanococcus aeolicus Nankai-3 419947 periphery Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis H37Ra 420246 core Geobacillus thermodenitrificans Geobacillus thermodenitrificans NG80-2 420247 periphery Methanobrevibacter smithii ATCC35061 Methanobrevibacter smithii ATCC35061 420324 core Microvirga lupini Microvirga lupini 420662 core Methylibium petroleiphilum Methylibium petroleiphilum PM1 420890 periphery Lactococcus garvieae Lg2 Lactococcus garvieae Lg2 421052 periphery Acinetobacter rudis Acinetobacter rudis CIP 110305 421072 core Epilithonimonas lactis Epilithonimonas lactis 421531 core Chryseobacterium luteum Chryseobacterium luteum 425104 periphery Shewanella sediminis Shewanella sediminis HAW-EB3 425400 periphery Helicobacter sp. MIT016451 Helicobacter sp. MIT 01-6451 426114 periphery Thiomonas arsenitoxydans Thiomonas arsenitoxydans 426117 core Methylobacterium sp. 446 Methylobacterium sp. 4-46 426355 periphery Methylobacterium radiotolerans Methylobacterium radiotolerans JCM 2831 426368 core Methanococcus maripaludis C7 Methanococcus maripaludis C7 426716 periphery Nocardia rhamnosiphila Nocardia rhamnosiphila 428125 core Clostridium leptum [Clostridium] leptum DSM753 428126 core Clostridium spiroforme [Clostridium] spiroforme DSM1552 428127 core Eubacterium dolichum [Eubacterium] dolichum DSM3991 429009 periphery Ammonifex degensii Ammonifex degensii KC4 430498 core Dactylellina haptotyla Dactylellina haptotyla 430998 periphery Baudoinia compniacensis Baudoinia compniacensis 431943 periphery Clostridium kluyveri Clostridium kluyveri DSM555 431947 core Porphyromonas gingivalis ATCC33277 Porphyromonas gingivalis ATCC33277 432096 core Kazachstania africana Kazachstania africana 434131 core Neorickettsia risticii Neorickettsia risticii str. Illinois 435590 periphery Bacteroides vulgatus Bacteroides vulgatus ATCC8482 435591 periphery Parabacteroides distasonis Parabacteroides distasonis ATCC8503 435830 periphery Actinomyces graevenitzii Actinomyces graevenitzii C83 435832 core Neisseria mucosa C102 Neisseria mucosa C102 435837 periphery Staphylococcus hominis C80 Staphylococcus hominis subsp. hominis C80 435838 periphery Staphylococcus capitis Staphylococcus capitis C87 435842 periphery Streptococcus sp. C150 Streptococcus sp. C150 435908 core Idiomarina salinarum Idiomarina salinarum 436114 periphery Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium sp. YO3AOP1 436229 periphery Streptacidiphilus jeojiense Streptacidiphilus jeojiense 436308 core Nitrosopumilus maritimus Nitrosopumilus maritimus SCM1 436717 core Acinetobacter oleivorans Acinetobacter oleivorans DR1 438753 core Azorhizobium caulinodans Azorhizobium caulinodans ORS 571 439235 core Desulfatibacillum alkenivorans Desulfatibacillum alkenivorans AK-01 439292 core Bacillus selenitireducens [Bacillus] selenitireducens MLS10 439375 periphery Ochrobactrum anthropi Ochrobactrum anthropi ATCC49188 439481 core Aciduliprofundum boonei Aciduliprofundum boonei T469 439493 core Pelagibacter sp. HTCC7211 Candidatus Pelagibacter sp. HTCC7211 439496 core Rhodobacterales bacterium Y4I Rhodobacterales bacterium Y4I 439497 periphery Ruegeria sp. R11 Ruegeria sp. R11 440512 periphery Pseudomonas sp. Chol1 Pseudomonas sp. Chol1 441620 periphery Methylobacterium populi Methylobacterium populi BJ001 441768 core Acholeplasma laidlawii Acholeplasma laidlawii PG-8A 441769 core Bacillus coahuilensis Bacillus coahuilensis m4-4 443143 periphery Geobacter sp. M18 Geobacter sp. M18 443144 periphery Geobacter sp. M21 Geobacter sp. M21 443152 periphery Marinobacter algicola Marinobacter algicola DG893 443218 core Amycolicicoccus subflavus Amycolicicoccus subflavus DQS3-9A1 443254 core Marinitoga piezophila Marinitoga piezophila KA3 443255 core Streptomyces clavuligerus Streptomyces clavuligerus ATCC27064 443598 periphery Bradyrhizobium sp. Cp53 Bradyrhizobium sp. Cp5.3 443906 core Clavibacter michiganensis NCPPB382 Clavibacter michiganensis subsp. michiganensis NCPPB 382 444157 periphery Pyrobaculum neutrophilum Pyrobaculum neutrophilum V24Sta 444158 core Methanococcus maripaludis C6 Methanococcus maripaludis C6 445335 periphery Clostridium botulinum NCTC2916 Clostridium botulinum NCTC2916 445961 core Chryseobacterium soli Chryseobacterium soli 445970 periphery Alistipes putredinis Alistipes putredinis DSM17216 445971 core Anaerofustis stercorihominis Anaerofustis stercorihominis DSM17244 445972 core Anaerotruncus colihominis Anaerotruncus colihominis DSM17241 445973 core Intestinibacter bartlettii Intestinibacter bartlettii DSM16795 445974 periphery Erysipelatoclostridium ramosum Erysipelatoclostridium ramosum DSM1402 445975 periphery Collinsella stercoris Collinsella stercoris DSM13279 445987 core Borrelia valaisiana VS116 Borrelia valaisiana VS116 446462 core Actinosynnema mirum Actinosynnema mirum DSM43827 446465 core Brachybacterium faecium Brachybacterium faecium DSM4810 446466 periphery Cellulomonas flavigena Cellulomonas flavigena DSM20109 446468 core Nocardiopsis dassonvillei Nocardiopsis dassonvillei subsp. dassonvillei DSM43111 446469 core Sanguibacter keddieii Sanguibacter keddieii DSM10542 446470 core Stackebrandtia nassauensis Stackebrandtia nassauensis DSM44728 446471 core Xylanimonas cellulosilytica Xylanimonas cellulosilytica DSM15894 448385 periphery Sorangium cellulosum So ce56 Sorangium cellulosum So ce56 449447 core Microcystis aeruginosa Microcystis aeruginosa NIES-843 449673 periphery Bacteroides stercoris Bacteroides stercoris ATCC43183 450380 periphery Microbacterium profundi Microbacterium profundi 450851 core Phenylobacterium zucineum Phenylobacterium zucineum HLK1 452471 core Amoebophilus asiaticus Candidatus Amoebophilus asiaticus 5a2 452637 core Opitutus terrae Opitutus terrae PB90-1 452638 periphery Polynucleobacter necessarius STIR1 Polynucleobacter necessarius subsp. necessarius STIR1 452652 core Kitasatospora setae Kitasatospora setae KM-6054 452659 periphery Rickettsia rickettsii Rickettsia rickettsii str. Iowa 452662 periphery Sphingobium japonicum UT26S Sphingobium japonicum UT26S 452863 core Arthrobacter chlorophenolicus Arthrobacter chlorophenolicus A6 453591 core Ignicoccus hospitalis Ignicoccus hospitalis KIN4/I 454957 periphery Xanthomonas arboricola Xanthomonas arboricola pv. celebensis 455436 periphery Glaciecola sp. HTCC2999 Glaciecola sp. HTCC2999 455632 core Streptomyces griseus Streptomyces griseus subsp. griseus NBRC 13350 456320 core Methanococcus voltae Methanococcus voltae A3 456442 periphery Methanoregula boonei Methanoregula boonei 6A8 457396 periphery Clostridium sp. 7243FAA Clostridium sp. 7_2_43FAA 457398 periphery Desulfovibrio sp. 31syn3 Desulfovibrio sp. 3_1_syn3 457405 periphery Fusobacterium nucleatum animalis Fusobacterium nucleatum subsp. animalis 7_1 457412 core Ruminococcus sp. 5139BFAA Ruminococcus sp. 5_1_39BFAA 457415 core Synergistes sp. 31syn1 Synergistes sp. 3_1_syn1 457421 periphery Clostridiales bacterium 1747FAA Clostridiales bacterium 1_7_47FAA 457424 periphery Bacteroides fragilis 3112 Bacteroides fragilis 3_1_12 457425 periphery Streptomyces albus J1074 Streptomyces albus J1074 457429 periphery Streptomyces pristinaespiralis Streptomyces pristinaespiralis ATCC25486 457570 core Natranaerobius thermophilus Natranaerobius thermophilus JW/NM-WN-LF 458233 core Macrococcus caseolyticus Macrococcus caseolyticus JCSC5402 458817 core Shewanella halifaxensis Shewanella halifaxensis HAW-EB4 459349 core Cloacimonas acidaminovorans Candidatus Cloacimonas acidaminovorans str. Evry 459495 periphery Arthrospira platensis C1 Arthrospira platensis C1 460265 periphery Methylobacterium nodulans Methylobacterium nodulans ORS 2060 463191 periphery Streptomyces sviceus Streptomyces sviceus ATCC29083 465515 core Micrococcus luteus NCTC 2665 Micrococcus luteus NCTC 2665 465541 periphery Streptomyces sp. Mg1 Streptomyces sp. Mg1 465817 core Erwinia tasmaniensis Erwinia tasmaniensis Et1/99 466038 periphery Pelagibacter ubique HTCC8051 Candidatus Pelagibacter ubique HTCC8051 466088 periphery Acinetobacter sp. Ver3 Acinetobacter sp. Ver3 467200 periphery Streptomyces griseoflavus Streptomyces griseoflavus Tu4000 467661 core Rhodobacteraceae bacterium KLH11 Rhodobacteraceae bacterium KLH11 467705 periphery Streptococcus gordonii Streptococcus gordonii str. Challis substr. CH1 468059 periphery Pedobacter oryzae Pedobacter oryzae DSM19973 468556 periphery Gordonia kroppenstedtii Gordonia kroppenstedtii DSM45133 469008 periphery Escherichia coli BL21 Escherichia coli BL21(DE3) 469371 periphery Thermobispora bispora Thermobispora bispora DSM43833 469378 core Cryptobacterium curtum Cryptobacterium curtum DSM15641 469381 core Dethiosulfovibrio peptidovorans Dethiosulfovibrio peptidovorans DSM11002 469382 periphery Halogeometricum borinquense Halogeometricum borinquense DSM11551 469383 core Conexibacter woesei DSM14684 Conexibacter woesei DSM14684 469595 periphery Citrobacter sp. 302 Citrobacter sp. 30_2 469596 core Coprobacillus sp. 291 Coprobacillus sp. 29_1 469604 periphery Fusobacterium nucleatum vincentii 3136A2 Fusobacterium nucleatum subsp. vincentii 3_1_36A2 469606 periphery Fusobacterium nucleatum vincentii 4113 Fusobacterium nucleatum subsp. vincentii 4_1_13 469609 periphery Streptococcus sp. 2136FAA Streptococcus sp. 2_1_36FAA 469610 periphery Burkholderiales bacterium 1147 Burkholderiales bacterium 1_1_47 469615 core Fusobacterium gonidiaformans Fusobacterium gonidiaformans ATCC25563 469616 core Fusobacterium mortiferum Fusobacterium mortiferum ATCC9817 469617 core Fusobacterium ulcerans Fusobacterium ulcerans ATCC49185 469618 core Fusobacterium varium Fusobacterium varium ATCC27725 470145 periphery Bacteroides coprocola Bacteroides coprocola DSM17136 470704 periphery Cladophialophora yegresii Cladophialophora yegresii 471223 core Geobacillus sp. WCH70 Geobacillus sp. WCH70 471852 periphery Thermomonospora curvata Thermomonospora curvata DSM43183 471853 core Beutenbergia cavernae Beutenbergia cavernae DSM12333 471854 core Dyadobacter fermentans Dyadobacter fermentans DSM18053 471855 core Slackia heliotrinireducens Slackia heliotrinireducens DSM20476 471856 core Jonesia denitrificans Jonesia denitrificans DSM20603 471857 periphery Saccharomonospora viridis Saccharomonospora viridis DSM43017 471870 periphery Bacteroides intestinalis Bacteroides intestinalis DSM17393 471874 core Providencia stuartii Providencia stuartii ATCC25827 471875 periphery Ruminococcus lactaris Ruminococcus lactaris ATCC29176 471881 periphery Proteus penneri Proteus penneri ATCC35198 472175 periphery Nitratireductor basaltis Nitratireductor basaltis 472759 periphery Nitrosococcus halophilus Nitrosococcus halophilus Nc 4 474922 periphery Colletotrichum gloeosporioides Colletotrichum gloeosporioides 476272 core Blautia hydrogenotrophica Blautia hydrogenotrophica DSM10507 477184 periphery Achromobacter arsenitoxydans Achromobacter arsenitoxydans SY8 477228 periphery Pseudomonas stutzeri TS44 Pseudomonas stutzeri TS44 477641 periphery Modestobacter marinus Modestobacter marinus 477974 core Desulforudis audaxviator Candidatus Desulforudis audaxviator MP104C 478741 periphery Verrucomicrobia bacterium LP2A Verrucomicrobia bacterium LP2A 478749 core Marvinbryantia formatexigens Marvinbryantia formatexigens DSM14469 478801 core Kytococcus sedentarius Kytococcus sedentarius DSM20547 479431 core Nakamurella multipartita Nakamurella multipartita DSM44233 479432 core Streptosporangium roseum Streptosporangium roseum DSM43021 479433 core Catenulispora acidiphila Catenulispora acidiphila DSM44928 479434 core Sphaerobacter thermophilus Sphaerobacter thermophilus DSM20745 479435 core Kribbella flavida Kribbella flavida DSM17836 479436 periphery Veillonella parvula Veillonella parvula DSM2008 479437 periphery Eggerthella lenta Eggerthella lenta DSM2243 481448 core Methylacidiphilum infernorum Methylacidiphilum infernorum V4 481805 periphery Escherichia coli ATCC8739 Escherichia coli ATCC8739 482234 periphery Streptococcus canis Streptococcus canis FSL Z3-227 482537 periphery Galeopterus variegatus Galeopterus variegatus 483215 periphery Bacteroides finegoldii Bacteroides finegoldii DSM17565 483216 core Bacteroides eggerthii Bacteroides eggerthii DSM20697 483218 core Bacteroides pectinophilus [Bacteroides] pectinophilus ATCC43243 483219 periphery Myxococcus fulvus Myxococcus fulvus HW-1 484018 periphery Bacteroides plebeius Bacteroides plebeius DSM17135 484019 core Thermosipho africanus Thermosipho africanus TCF52B 484022 periphery Francisella philomiragia Francisella philomiragia subsp. philomiragia ATCC25017 484770 core Pelosinus sp. UFO1 Pelosinus sp. UFO1 485913 core Ktedonobacter racemifer Ktedonobacter racemifer DSM44963 485914 core Halomicrobium mukohataei Halomicrobium mukohataei DSM12286 485915 core Desulfohalobium retbaense Desulfohalobium retbaense DSM5692 485916 periphery Desulfotomaculum acetoxidans Desulfotomaculum acetoxidans DSM771 485917 core Pedobacter heparinus Pedobacter heparinus DSM2366 485918 core Chitinophaga pinensis Chitinophaga pinensis DSM2588 487316 periphery Acinetobacter soli Acinetobacter soli 487521 periphery Mycobacterium intracellulare Mycobacterium intracellulare ATCC13950 487796 core Flavobacteria bacterium MS0242A Flavobacteria bacterium MS024-2A 488538 core Puniceispirillum marinum Candidatus Puniceispirillum marinum IMCC1322 489653 periphery Neisseria lactamica Neisseria lactamica 020-06 489825 core Moorea producens Moorea producens 3L 490899 periphery Desulfurococcus kamchatkensis Desulfurococcus kamchatkensis 1221n 491205 periphery Chryseobacterium hispalense Chryseobacterium hispalense DSM25574 491915 core Anoxybacillus flavithermus WK1 Anoxybacillus flavithermus WK1 491916 periphery Rhizobium etli CIAT652 Rhizobium etli CIAT 652 491952 periphery Marinomonas posidonica Marinomonas posidonica IVIA-Po-181 492774 periphery Rhizobium alamii Rhizobium alamii 493475 periphery Glaciecola arctica Glaciecola arctica BSs20135 494416 periphery Psychrobacter sp. TB15 Psychrobacter sp. TB15 494419 periphery Arthrobacter sp. TB23 Arthrobacter sp. TB 23 496833 periphery Mycoplasma fermentans Mycoplasma fermentans PG18 497321 periphery Thauera sp. 63 Thauera sp. 63 497964 core Chthoniobacter flavus Chthoniobacter flavus Ellin428 497965 periphery Cyanothece sp. PCC7822 Cyanothece sp. PCC7822 498211 core Cellvibrio japonicus Cellvibrio japonicus Ueda107 498742 core Borrelia spielmanii Borrelia spielmanii A14S 498761 core Heliobacterium modesticaldum Heliobacterium modesticaldum Ice1 498848 core Thermus aquaticus Thermus aquaticus Y51MC23 500153 periphery Streptomyces avicenniae Streptomyces avicenniae 500632 core Tyzzerella nexilis Tyzzerella nexilis DSM1787 500633 periphery Clostridium hiranonis [Clostridium] hiranonis DSM13275 500635 core Mitsuokella multacida Mitsuokella multacida DSM20544 500637 core Providencia rustigianii Providencia rustigianii DSM4541 500640 periphery Citrobacter youngae Citrobacter youngae ATCC29220 501479 core Citreicella sp. SE45 Citreicella sp. SE45 502025 core Haliangium ochraceum Haliangium ochraceum DSM14365 502347 core Escherichia albertii TW07627 Escherichia albertii TW07627 502558 periphery Eggerthella sp. YY7918 Eggerthella sp. YY7918 504472 core Spirosoma linguale Spirosoma linguale DSM74 504474 periphery Corynebacterium urealyticum Corynebacterium urealyticum DSM7109 504487 core Jejuia pallidilutea Jejuia pallidilutea 504728 core Meiothermus ruber Meiothermus ruber DSM1279 504832 core Oligotropha carboxidovorans Oligotropha carboxidovorans OM5 506534 core Rheinheimera sp. A13L Rheinheimera sp. A13L 509190 periphery Caulobacter segnis Caulobacter segnis ATCC21756 509191 core Acetivibrio cellulolyticus Acetivibrio cellulolyticus CD2 509635 periphery Pedobacter sp. V48 Pedobacter sp. V48 511051 core Caldisericum exile Caldisericum exile AZM16c01 511062 core Oceanimonas sp. GK1 Oceanimonas sp. GK1 511145 core Escherichia coli K12 MG1655 Escherichia coli str. K-12 substr. MG1655 511437 periphery Lactobacillus buchneri NRRLB30929 Lactobacillus buchneri NRRL B-30929 511680 periphery Butyrivibrio crossotus Butyrivibrio crossotus DSM2876 511995 core Azobacteroides pseudotrichonymphae Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 512564 periphery Mycoplasma crocodyli Mycoplasma crocodyli MP145 512565 periphery Actinoplanes missouriensis Actinoplanes missouriensis 431 515618 core Riesia pediculicola Candidatus Riesia pediculicola USDA 515620 core Eubacterium eligens [Eubacterium] eligens ATCC27750 515622 core Butyrivibrio proteoclasticus B316 Butyrivibrio proteoclasticus B316 515635 periphery Dictyoglomus turgidum Dictyoglomus turgidum DSM6724 517417 periphery Chlorobaculum parvum Chlorobaculum parvum NCIB 8327 517418 core Chloroherpeton thalassium Chloroherpeton thalassium ATCC35110 517433 periphery Pantoea sp. aB Pantoea sp. aB 517722 periphery Citromicrobium sp. JLT1363 Citromicrobium sp. JLT1363 518635 periphery Bifidobacterium angulatum Bifidobacterium angulatum DSM20098 518637 core Holdemanella biformis Holdemanella biformis DSM3989 518766 core Rhodothermus marinus Rhodothermus marinus DSM4252 519441 core Streptobacillus moniliformis Streptobacillus moniliformis DSM12112 519442 core Halorhabdus utahensis Halorhabdus utahensis DSM12940 519989 periphery Ectothiorhodospira sp. PHS1 Ectothiorhodospira sp. PHS-1 520709 periphery Acinetobacter sp. NIPH973 Acinetobacter sp. NIPH 973 520999 periphery Providencia alcalifaciens Providencia alcalifaciens DSM30120 521000 periphery Providencia rettgeri DSM1131 Providencia rettgeri DSM1131 521003 core Collinsella intestinalis Collinsella intestinalis DSM13280 521010 periphery Borrelia bissettii Borrelia bissettii DN127 521011 core Methanosphaerula palustris Methanosphaerula palustris E1-9c 521045 core Kosmotoga olearia Kosmotoga olearia TBF 19.5.1 521095 periphery Atopobium parvulum Atopobium parvulum DSM20469 521096 periphery Tsukamurella paurometabola Tsukamurella paurometabola DSM20162 521097 core Capnocytophaga ochracea DSM7271 Capnocytophaga ochracea DSM7271 521098 core Alicyclobacillus acidocaldarius DSM446 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM446 521393 periphery Actinomyces timonensis Actinomyces timonensis DSM23838 521460 core Caldicellulosiruptor bescii Caldicellulosiruptor bescii DSM6725 521674 periphery Planctomyces limnophilus Planctomyces limnophilus DSM3776 521719 periphery Pseudomonas caeni Pseudomonas caeni DSM24390 522306 core Accumulibacter phosphatis Candidatus Accumulibacter phosphatis clade IIA str. UW-1 522373 core Stenotrophomonas maltophilia K279a Stenotrophomonas maltophilia K279a 522772 core Denitrovibrio acetiphilus Denitrovibrio acetiphilus DSM12809 523791 core Kangiella koreensis Kangiella koreensis DSM16069 523794 core Leptotrichia buccalis Leptotrichia buccalis C-1013-b 523841 periphery Haloferax mediterranei Haloferax mediterranei ATCC33500 523845 periphery Methanothermococcus thermolithotrophicus Methanothermococcus thermolithotrophicus DSM2095 523850 core Thermococcus onnurineus Thermococcus onnurineus NA1 525146 core Desulfovibrio desulfuricans ATCC27774 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC27774 525244 periphery Acinetobacter sp. ATCC27244 Acinetobacter sp. ATCC27244 525245 periphery Actinomyces coleocanis Actinomyces coleocanis DSM15436 525246 periphery Actinomyces urogenitalis DSM15434 Actinomyces urogenitalis DSM15434 525254 periphery Anaerococcus lactolyticus ATCC51172 Anaerococcus lactolyticus ATCC51172 525255 periphery Anaerococcus tetradius Anaerococcus tetradius ATCC35098 525256 periphery Atopobium vaginae DSM15829 Atopobium vaginae DSM15829 525257 core Chryseobacterium gleum Chryseobacterium gleum ATCC35910 525260 periphery Corynebacterium accolens Corynebacterium accolens ATCC49725 525263 periphery Corynebacterium lipophiloflavum Corynebacterium lipophiloflavum DSM44291 525264 periphery Corynebacterium pseudogenitalium Corynebacterium pseudogenitalium ATCC33035 525268 periphery Corynebacterium striatum Corynebacterium striatum ATCC6940 525282 periphery Finegoldia magna ATCC53516 Finegoldia magna ATCC53516 525309 periphery Lactobacillus antri Lactobacillus antri DSM16041 525318 periphery Lactobacillus buchneri ATCC11577 Lactobacillus buchneri ATCC11577 525365 periphery Lactobacillus ultunensis Lactobacillus ultunensis DSM16047 525367 periphery Listeria grayi Listeria grayi DSM20601 525368 periphery Mycobacterium parascrofulaceum Mycobacterium parascrofulaceum ATCC BAA-614 525373 core Sphingobacterium spiritivorum Sphingobacterium spiritivorum ATCC33861 525378 periphery Staphylococcus caprae Staphylococcus caprae M23864:W1 525379 periphery Streptococcus equinus Streptococcus equinus ATCC9812 525897 core Desulfomicrobium baculatum Desulfomicrobium baculatum DSM4028 525898 periphery Sulfurospirillum deleyianum Sulfurospirillum deleyianum DSM6946 525903 core Thermanaerovibrio acidaminovorans Thermanaerovibrio acidaminovorans DSM6589 525904 core Thermobaculum terrenum Thermobaculum terrenum ATCC BAA-798 525909 core Acidimicrobium ferrooxidans Acidimicrobium ferrooxidans DSM10331 525919 core Anaerococcus prevotii DSM20548 Anaerococcus prevotii DSM20548 526218 core Sebaldella termitidis Sebaldella termitidis ATCC33386 526222 periphery Desulfovibrio salexigens Desulfovibrio salexigens DSM2638 526224 periphery Brachyspira murdochii Brachyspira murdochii DSM12563 526225 core Geodermatophilus obscurus Geodermatophilus obscurus DSM43160 526226 periphery Gordonia bronchialis Gordonia bronchialis DSM43247 526227 periphery Meiothermus silvanus Meiothermus silvanus DSM9946 527002 periphery Yersinia aldovae Yersinia aldovae ATCC35236 529507 periphery Proteus mirabilis Proteus mirabilis HI4320 529709 periphery Pyrococcus yayanosii Pyrococcus yayanosii CH1 529818 core Thecamonas trahens Thecamonas trahens 529884 periphery Rhodoluna lacicola Candidatus Rhodoluna lacicola 530564 core Pirellula staleyi Pirellula staleyi DSM6068 531844 periphery Flavobacteriaceae bacterium 351910 Flavobacteriaceae bacterium 3519-10 533240 core Cylindrospermopsis raciborskii Cylindrospermopsis raciborskii CS-505 533247 core Raphidiopsis brookii Raphidiopsis brookii D9 535289 core Acidovorax ebreus Acidovorax ebreus TPSY 536019 periphery Mesorhizobium opportunistum Mesorhizobium opportunistum WSM2075 536227 periphery Clostridium carboxidivorans Clostridium carboxidivorans P7 536232 periphery Clostridium botulinum A2 Kyoto Clostridium botulinum A2 str. Kyoto 536233 periphery Clostridium botulinum E1 BoNT Clostridium botulinum E1 str. 'BoNT E Beluga' 537007 periphery Blautia hansenii Blautia hansenii DSM20583 537011 periphery Prevotella copri Prevotella copri DSM18205 537013 periphery Clostridium methylpentosum [Clostridium] methylpentosum DSM5476 537021 periphery Liberibacter asiaticus psy62 Candidatus Liberibacter asiaticus str. psy62 537970 periphery Helicobacter canadensis Helicobacter canadensis MIT 98-5491 537971 periphery Helicobacter cinaedi CCUG18818 Helicobacter cinaedi CCUG18818 537972 periphery Helicobacter pullorum Helicobacter pullorum MIT 98-5489 543526 periphery Haloterrigena turkmenica Haloterrigena turkmenica DSM5511 543632 periphery Actinoplanes subtropicus Actinoplanes subtropicus 543728 periphery Variovorax paradoxus S110 Variovorax paradoxus S110 543734 core Lactobacillus casei BL23 Lactobacillus casei BL23 543913 core beta proteobacterium CB beta proteobacterium CB 545243 periphery Clostridium arbusti Clostridium arbusti SL206 545264 periphery Thioalkalivibrio sp. AKL11 Thioalkalivibrio sp. AKL11 545276 periphery Thioalkalivibrio sp. ALJ24 Thioalkalivibrio sp. ALJ24 545693 core Bacillus megaterium QM B1551 Bacillus megaterium QM B1551 545694 periphery Treponema primitia ZAS2 Treponema primitia ZAS-2 545695 periphery Treponema azotonutricium Treponema azotonutricium ZAS-9 545696 core Holdemania filiformis Holdemania filiformis DSM12042 545697 periphery Clostridium celatum Clostridium celatum DSM1785 546262 core Neisseria cinerea Neisseria cinerea ATCC14685 546264 core Neisseria flavescens NRL30031H210 Neisseria flavescens NRL30031/H210 546266 periphery Neisseria mucosa ATCC25996 Neisseria mucosa ATCC25996 546267 periphery Neisseria polysaccharea Neisseria polysaccharea ATCC43768 546268 periphery Neisseria subflava Neisseria subflava NJ9703 546269 core Filifactor alocis Filifactor alocis ATCC35896 546270 periphery Gemella haemolysans ATCC10379 Gemella haemolysans ATCC10379 546271 periphery Selenomonas sputigena Selenomonas sputigena ATCC35185 546273 core Veillonella dispar Veillonella dispar ATCC17748 546274 core Eikenella corrodens ATCC23834 Eikenella corrodens ATCC23834 546275 core Fusobacterium periodonticum Fusobacterium periodonticum ATCC33693 546414 periphery Deinococcus deserti Deinococcus deserti VCD115 547042 periphery Bacteroides coprophilus Bacteroides coprophilus DSM18228 547043 periphery Bifidobacterium pseudocatenulatum Bifidobacterium pseudocatenulatum DSM20438 547045 periphery Neisseria sicca Neisseria sicca ATCC29256 547144 periphery Hydrogenobaculum sp. HO Hydrogenobaculum sp. HO 547163 periphery Mycobacterium vulneris Mycobacterium vulneris 547559 core Natrialba magadii Natrialba magadii ATCC43099 548476 periphery Corynebacterium aurimucosum Corynebacterium aurimucosum ATCC700975 548477 periphery Corynebacterium glucuronolyticum Corynebacterium glucuronolyticum ATCC51867 548479 periphery Mobiluncus curtisii ATCC43063 Mobiluncus curtisii ATCC43063 550540 core Ferrimonas balearica Ferrimonas balearica DSM9799 551115 periphery Nostoc azollae 'Nostoc azollae' 0708 551275 periphery Hirschia maritima Hirschia maritima DSM19733 551789 periphery Ponticaulis koreensis Ponticaulis koreensis DSM19734 552396 periphery Erysipelotrichaceae bacterium 5254FAA Erysipelotrichaceae bacterium 5_2_54FAA 552398 periphery Ruminococcaceae bacterium D16 Ruminococcaceae bacterium D16 552467 periphery Cryptococcus gattii Cryptococcus gattii 552531 periphery Bifidobacterium animalis Bifidobacterium animalis subsp. lactis BB-12 552811 core Dehalogenimonas lykanthroporepellens Dehalogenimonas lykanthroporepellens BL-DC-9 553171 periphery Prevotella bivia JCVIHMP010 Prevotella bivia JCVIHMP010 553174 periphery Prevotella melaninogenica Prevotella melaninogenica ATCC25845 553175 periphery Porphyromonas endodontalis Porphyromonas endodontalis ATCC35406 553177 core Capnocytophaga sputigena Capnocytophaga sputigena ATCC33612 553178 periphery Capnocytophaga gingivalis Capnocytophaga gingivalis ATCC33624 553184 periphery Atopobium rimae Atopobium rimae ATCC49626 553204 periphery Corynebacterium amycolatum Corynebacterium amycolatum SK46 553207 periphery Corynebacterium matruchotii Corynebacterium matruchotii ATCC14266 553217 core Enhydrobacter aerosaccus Enhydrobacter aerosaccus SK60 553218 periphery Campylobacter rectus Campylobacter rectus RM3267 553219 periphery Campylobacter showae RM3277 Campylobacter showae RM3277 553220 periphery Campylobacter gracilis Campylobacter gracilis RM3268 553385 periphery Cobetia crustatorum Cobetia crustatorum 553973 periphery Clostridium hylemonae [Clostridium] hylemonae DSM15053 554065 core Chlorella variabilis Chlorella variabilis 555079 core Thermosediminibacter oceani Thermosediminibacter oceani DSM16646 555088 periphery Dethiobacter alkaliphilus Dethiobacter alkaliphilus AHT 1 555217 core Zymomonas mobilis ATCC10988 Zymomonas mobilis subsp. mobilis ATCC10988 555500 core Galbibacter marinus Galbibacter marinus 555778 core Halothiobacillus neapolitanus Halothiobacillus neapolitanus c2 555779 core Desulfonatronospira thiodismutans Desulfonatronospira thiodismutans ASO3-1 555793 periphery Novosphingobium sp. Rr 217 Novosphingobium sp. Rr 2-17 556261 periphery Clostridium sp. D5 Clostridium sp. D5 556263 core Fusobacterium necrophorum D12 Fusobacterium necrophorum D12 556267 periphery Helicobacter winghamensis Helicobacter winghamensis ATCC BAA-430 556268 periphery Oxalobacter formigenes HOxBLS Oxalobacter formigenes HOxBLS 556269 periphery Oxalobacter formigenes OXCC13 Oxalobacter formigenes OXCC13 557436 core Lactobacillus reuteri DSM20016 Lactobacillus reuteri DSM20016 557598 core Laribacter hongkongensis Laribacter hongkongensis HLHK9 557599 periphery Mycobacterium kansasii ATCC12478 Mycobacterium kansasii ATCC12478 558152 periphery Chryseobacterium piperi Chryseobacterium piperi 558169 core Lentibacillus jeotgali Lentibacillus jeotgali 558173 periphery Corynebacterium doosanense Corynebacterium doosanense CAU212 558884 periphery Aeromonas sp. AE122 Aeromonas sp. AE122 561175 periphery Actinomadura flavalba Actinomadura flavalba DSM45200 561177 periphery Anaerococcus hydrogenalis Anaerococcus hydrogenalis DSM7454 561180 periphery Bifidobacterium gallicum Bifidobacterium gallicum DSM20093 561229 core Dickeya zeae Dickeya zeae Ech1591 561230 periphery Pectobacterium carotovorum PC1 Pectobacterium carotovorum subsp. carotovorum PC1 561231 periphery Pectobacterium wasabiae Pectobacterium wasabiae WPP163 562743 core Amphibacillus jilinensis Amphibacillus jilinensis Y1 562970 core Kyrpidia tusciae Kyrpidia tusciae DSM2912 562973 periphery Actinomyces viscosus Actinomyces viscosus C505 562981 core Gemella haemolysans M341 Gemella haemolysans M341 562982 core Gemella morbillorum Gemella morbillorum M424 562983 periphery Gemella sanguinis Gemella sanguinis M325 563008 core Prevotella oris C735 Prevotella oris C735 563031 periphery Prevotella sp. C561 Prevotella sp. C561 563037 periphery Streptococcus sp. M143 Streptococcus sp. M143 563038 periphery Streptococcus sp. M334 Streptococcus sp. M334 563040 periphery Sulfurimonas autotrophica Sulfurimonas autotrophica DSM16294 563192 core Bilophila wadsworthia 316 Bilophila wadsworthia 3_1_6 565033 core Geoglobus acetivorans Geoglobus acetivorans 565034 core Brachyspira hyodysenteriae Brachyspira hyodysenteriae WA1 565045 periphery Luminiphilus syltensis Luminiphilus syltensis NOR5-1B 565575 periphery Ureaplasma urealyticum Ureaplasma urealyticum serovar 10 str. ATCC33699 565653 periphery Enterococcus gallinarum Enterococcus gallinarum EG2 565655 core Enterococcus casseliflavus Enterococcus casseliflavus EC20 565664 periphery Enterococcus faecium C68 Enterococcus faecium C68 566461 periphery Streptomyces ghanaensis Streptomyces ghanaensis ATCC14672 566466 periphery Gammaproteobacteria bacterium NOR53 gamma proteobacterium NOR5-3 566552 periphery Bifidobacterium catenulatum Bifidobacterium catenulatum DSM16992 568076 periphery Metarhizium robertsii Metarhizium robertsii 568703 core Lactobacillus rhamnosus Lactobacillus rhamnosus GG 568706 core Bordetella pertussis 18323 Bordetella pertussis 18323 568768 periphery Dickeya sp. NCPPB569 Dickeya sp. NCPPB 569 568816 core Acidaminococcus intestini Acidaminococcus intestini RyC-MR95 568817 periphery Serratia symbiotica Serratia symbiotica str. 'Cinara cedri' 570268 periphery Nocardiopsis potens Nocardiopsis potens DSM45234 570417 periphery Wolbachia sp. Culex Wolbachia endosymbiont of Culex quinquefasciatus Pel 570952 core Fodinicurvata sediminis Fodinicurvata sediminis DSM21159 570967 periphery Fodinicurvata fenggangensis Fodinicurvata fenggangensis DSM21160 571166 core Sedimentitalea nanhaiensis Sedimentitalea nanhaiensis DSM24252 572265 periphery Hamiltonella defensa Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 572477 core Allochromatium vinosum Allochromatium vinosum DSM180 572478 core Vulcanisaeta distributa Vulcanisaeta distributa DSM14429 572479 periphery Halanaerobium praevalens Halanaerobium praevalens DSM2228 572480 periphery Arcobacter nitrofigilis Arcobacter nitrofigilis DSM7299 572544 core Ilyobacter polytropus Ilyobacter polytropus DSM2926 572546 periphery Archaeoglobus profundus Archaeoglobus profundus DSM5631 572547 core Aminobacterium colombiense Aminobacterium colombiense DSM12261 573061 periphery Clostridium cellulovorans Clostridium cellulovorans 743B 573063 periphery Methanocaldococcus infernus Methanocaldococcus infernus ME 573064 core Methanocaldococcus fervens Methanocaldococcus fervens AG86 573065 core Asticcacaulis excentricus Asticcacaulis excentricus CB 48 573370 core Desulfovibrio magneticus RS1 Desulfovibrio magneticus RS-1 573413 core Spirochaeta smaragdinae Spirochaeta smaragdinae DSM11293 573569 periphery Francisella sp. TX077308 Francisella sp. TX077308 574087 core Acetohalobium arabaticum Acetohalobium arabaticum DSM5501 574375 periphery Bacillus gaemokensis Bacillus gaemokensis 574376 periphery Bacillus manliponensis Bacillus manliponensis 574556 periphery Anaplasma centrale Anaplasma centrale str. Israel 574966 periphery Halomonas zhanjiangensis Halomonas zhanjiangensis DSM21076 575540 core Isosphaera pallida Isosphaera pallida ATCC43644 575564 periphery Acinetobacter sp. RUH2624 Acinetobacter sp. RUH2624 575586 periphery Acinetobacter johnsonii Acinetobacter johnsonii SH046 575588 periphery Acinetobacter lwoffii SH145 Acinetobacter lwoffii SH145 575589 periphery Acinetobacter radioresistens Acinetobacter radioresistens SH164 575590 periphery Bacteroidetes F0058 Bacteroidetes oral taxon 274 str. F0058 575593 periphery Lachnospiraceae F0167 Lachnospiraceae oral taxon 107 str. F0167 575594 periphery Lactobacillus coleohominis Lactobacillus coleohominis 101-4-CHN 575605 periphery Lactobacillus jensenii 1153CHN Lactobacillus jensenii 115-3-CHN 575606 periphery Lactobacillus jensenii 272CHN Lactobacillus jensenii 27-2-CHN 575609 periphery Peptoniphilus sp. F0131 Peptoniphilus sp. oral taxon 386 str. F0131 575615 periphery Prevotella sp. F0108 Prevotella sp. oral taxon 317 str. F0108 575788 periphery Vibrio tasmaniensis Vibrio tasmaniensis LGP32 579137 periphery Methanocaldococcus vulcanius Methanocaldococcus vulcanius M7 579138 periphery Zymomonas mobilis pomaceae Zymomonas mobilis subsp. pomaceae ATCC29192 579405 periphery Dickeya dadantii Ech703 Dickeya dadantii Ech703 580327 periphery Thermoanaerobacterium thermosaccharolyticum Thermoanaerobacterium thermosaccharolyticum DSM571 580331 core Thermoanaerobacter italicus Thermoanaerobacter italicus Ab9 580332 core Sideroxydans lithotrophicus Sideroxydans lithotrophicus ES-1 580340 core Thermovirga lienii Thermovirga lienii DSM17291 582402 core Hirschia baltica Hirschia baltica ATCC49814 582515 core Rubidibacter lacunae Rubidibacter lacunae KORDI 51-2 582744 core Methylovorus glucosetrophus Methylovorus glucosetrophus SIP3-4 582899 core Hyphomicrobium denitrificans ATCC51888 Hyphomicrobium denitrificans ATCC51888 583345 periphery Methylotenera mobilis JLW8 Methylotenera mobilis JLW8 583355 core Coraliomargarita akajimensis Coraliomargarita akajimensis DSM45221 584708 core Aminomonas paucivorans Aminomonas paucivorans DSM12260 585198 periphery Mobiluncus curtisii ATCC35241 Mobiluncus curtisii subsp. curtisii ATCC35241 585199 periphery Mobiluncus mulieris ATCC35243 Mobiluncus mulieris ATCC35243 585202 periphery Streptococcus mitis SK321 Streptococcus mitis SK321 585203 periphery Streptococcus mitis SK564 Streptococcus mitis SK564 585204 periphery Streptococcus mitis SK597 Streptococcus mitis SK597 585394 periphery Roseburia hominis Roseburia hominis A2-183 585423 periphery Synechococcus sp. KORDI49 Synechococcus sp. KORDI-49 585425 periphery Synechococcus sp. KORDI52 Synechococcus sp. KORDI-52 585501 periphery Oribacterium sinus Oribacterium sinus F0268 585502 periphery Prevotella bergensis Prevotella bergensis DSM17361 585503 periphery Selenomonas noxia ATCC43541 Selenomonas noxia ATCC43541 585506 periphery Weissella paramesenteroides Weissella paramesenteroides ATCC33313 585524 periphery Lactobacillus amylolyticus Lactobacillus amylolyticus DSM11664 585529 periphery Corynebacterium genitalium Corynebacterium genitalium ATCC33030 585530 core Brevibacterium mcbrellneri Brevibacterium mcbrellneri ATCC49030 585531 core Aeromicrobium marinum Aeromicrobium marinum DSM15272 585543 core Bacteroides sp. D20 Bacteroides sp. D20 586413 periphery Oceanobacillus manasiensis Oceanobacillus manasiensis 586416 core Terribacillus aidingensis Terribacillus aidingensis 587753 periphery Pseudomonas chlororaphis Pseudomonas chlororaphis 588581 periphery Clostridium papyrosolvens [Clostridium] papyrosolvens DSM2782 588596 core Rhizophagus irregularis Rhizophagus irregularis 588726 periphery Kazachstania naganishii Kazachstania naganishii 588932 core Brevundimonas naejangsanensis Brevundimonas naejangsanensis 589865 core Desulfurivibrio alkaliphilus Desulfurivibrio alkaliphilus AHT2 589873 core Alteromonas australica Alteromonas australica 589924 core Ferroglobus placidus Ferroglobus placidus DSM10642 590409 periphery Dickeya dadantii Ech586 Dickeya dadantii Ech586 590998 core Cellulomonas fimi Cellulomonas fimi ATCC484 591001 core Acidaminococcus fermentans Acidaminococcus fermentans DSM20731 591019 periphery Staphylothermus hellenicus Staphylothermus hellenicus DSM12710 591023 periphery Actinobacillus minor 202 Actinobacillus minor 202 591157 periphery Streptomyces sp. SPB78 Streptomyces sp. SPB78 591158 periphery Streptomyces sp. AA4 Streptomyces sp. AA4 591159 periphery Streptomyces viridochromogenes Streptomyces viridochromogenes DSM40736 591167 periphery Streptomyces pratensis Streptomyces pratensis ATCC33331 592010 core Abiotrophia defectiva Abiotrophia defectiva ATCC49176 592015 periphery Anaerobaculum hydrogeniformans Anaerobaculum hydrogeniformans ATCC BAA-1850 592026 core Catonella morbi Catonella morbi ATCC51271 592027 core Clostridium botulinum D 1873 Clostridium botulinum D str. 1873 592028 core Dialister invisus Dialister invisus DSM15470 592029 periphery Nonlabens dokdonensis Nonlabens dokdonensis DSW-6 592031 core Eubacterium saphenum Eubacterium saphenum ATCC49989 592316 periphery Pantoea sp. At9b Pantoea sp. At-9b 593105 periphery Pantoea sp. Sc1 Pantoea sp. Sc1 593117 core Thermococcus gammatolerans Thermococcus gammatolerans EJ3 593750 periphery Methanoregula formicica Methanoregula formicica SMSP 593907 periphery Cellvibrio gilvus [Cellvibrio] gilvus ATCC13127 595460 periphery Rhodopirellula sp. SWK7 Rhodopirellula sp. SWK7 595494 core Tolumonas auensis Tolumonas auensis DSM9187 595536 core Methylosinus trichosporium Methylosinus trichosporium OB3b 595537 core Variovorax paradoxus EPS Variovorax paradoxus EPS 595593 periphery Arthrobacter sp. A3 Arthrobacter sp. A3 596151 periphery Desulfovibrio fructosivorans Desulfovibrio fructosivorans JJ 596152 periphery Desulfovibrio sp. U5L Desulfovibrio sp. U5L 596153 periphery Alicycliphilus denitrificans BC Alicycliphilus denitrificans BC 596154 core Alicycliphilus denitrificans K601 Alicycliphilus denitrificans K601 596315 periphery Peptostreptococcus stomatis Peptostreptococcus stomatis DSM17678 596319 periphery Staphylococcus warneri L37603 Staphylococcus warneri L37603 596320 periphery Neisseria flavescens SK114 Neisseria flavescens SK114 596323 periphery Leptotrichia goodfellowii Leptotrichia goodfellowii F0264 596324 core Treponema vincentii Treponema vincentii ATCC35580 596327 core Porphyromonas uenonis 603 Porphyromonas uenonis 60-3 596328 core Mobiluncus mulieris 281 Mobiluncus mulieris 28-1 596329 core Peptostreptococcus anaerobius 653L Peptostreptococcus anaerobius 653-L 596330 periphery Peptoniphilus lacrimalis Peptoniphilus lacrimalis 315-B 598467 core Brenneria sp. EniD312 Brenneria sp. EniD312 598659 core Nautilia profundicola Nautilia profundicola AmH 600809 periphery Blattabacterium sp. BPLAN Blattabacterium sp. (Periplaneta americana) 604331 periphery Meiothermus rufus Meiothermus rufus DSM22234 604354 periphery Thermococcus sibiricus Thermococcus sibiricus MM 739 608506 periphery Caldicellulosiruptor obsidiansis Caldicellulosiruptor obsidiansis OB47 608534 core Oribacterium sp. F0262 Oribacterium sp. oral taxon 078 str. F0262 608538 core Hydrogenobacter thermophilus Hydrogenobacter thermophilus TK-6 610130 core Clostridium saccharolyticum WM1 [Clostridium] saccharolyticum WM1 613026 periphery Helicobacter bilis Helicobacter bilis ATCC43879 614083 periphery Rhodoferax saidenbachensis Rhodoferax saidenbachensis ED16 616991 core Arenibacter algicola Arenibacter algicola 617140 periphery Vibrio splendidus Vibrio splendidus ZS-139 619693 periphery Prevotella sp. F0295 Prevotella sp. oral taxon 472 str. F0295 620914 periphery Aquimarina agarilytica Aquimarina agarilytica ZC1 621372 core Paenibacillus sp. D14 Paenibacillus sp. oral taxon 786 str. D14 622312 core Roseburia inulinivorans Roseburia inulinivorans DSM16841 622637 core Methylocystis sp. ATCC49242 Methylocystis sp. ATCC49242 626369 periphery Granulicatella elegans Granulicatella elegans ATCC700633 626418 periphery Burkholderia glumae Burkholderia glumae BGR1 626522 core Prevotella tannerae Prevotella tannerae ATCC51259 626523 core Shuttleworthia satelles Shuttleworthia satelles DSM14600 626887 periphery Marinobacter nanhaiticus Marinobacter nanhaiticus D15-8W 626939 periphery Phascolarctobacterium succinatutens Phascolarctobacterium succinatutens YIT 12067 627192 periphery Sphingobium sp. SYK6 Sphingobium sp. SYK-6 629265 periphery Pseudomonas syringae maculicola Pseudomonas syringae pv. maculicola str. ES4326 629742 periphery Staphylococcus hominis SK119 Staphylococcus hominis SK119 629773 periphery Sphingomonas sp. Mn802worker Sphingomonas sp. Mn802worker 630626 core Shimwellia blattae Shimwellia blattae DSM4481 631362 core Thiorhodovibrio sp. 970 Thiorhodovibrio sp. 970 631454 periphery Lutibaculum baratangense Lutibaculum baratangense AMV1 632245 periphery Clostridium butyricum Clostridium butyricum E4 str. BoNT E BL5262 632292 periphery Caldicellulosiruptor hydrothermalis Caldicellulosiruptor hydrothermalis 108 632335 periphery Caldicellulosiruptor kristjanssonii Caldicellulosiruptor kristjanssonii I77R1B 632518 periphery Caldicellulosiruptor owensensis Caldicellulosiruptor owensensis OL 633131 core Thalassobium sp. R2A62 Thalassobium sp. R2A62 633147 core Olsenella uli Olsenella uli DSM7084 633148 core Thermosphaera aggregans Thermosphaera aggregans DSM11486 633149 periphery Brevundimonas subvibrioides Brevundimonas subvibrioides ATCC15264 633697 core Eubacterium cellulosolvens 6 [Eubacterium] cellulosolvens 6 634176 periphery Aggregatibacter aphrophilus Aggregatibacter aphrophilus NJ8700 634177 periphery Komagataeibacter medellinensis Komagataeibacter medellinensis NBRC 3288 634452 core Acetobacter pasteurianus IFO328301 Acetobacter pasteurianus IFO 3283-01 634497 periphery Haloarcula hispanica Haloarcula hispanica ATCC33960 634498 core Methanobrevibacter ruminantium Methanobrevibacter ruminantium M1 634499 periphery Erwinia pyrifoliae Erwinia pyrifoliae Ep1/96 634500 core Erwinia billingiae Erwinia billingiae Eb661 634504 periphery Bartonella grahamii Bartonella grahamii as4aup 634956 periphery Geobacillus thermoglucosidasius Geobacillus thermoglucosidasius C56-YS93 634994 core Leptotrichia hofstadii Leptotrichia hofstadii F0254 635013 core Thermincola potens Thermincola potens JR 637389 core Acidithiobacillus caldus Acidithiobacillus caldus ATCC51756 637390 periphery Acidithiobacillus thiooxidans Acidithiobacillus thiooxidans ATCC19377 637905 periphery Shewanella violacea Shewanella violacea DSS12 637910 core Citrobacter rodentium Citrobacter rodentium ICC168 637911 periphery Actinobacillus minor NM305 Actinobacillus minor NM305 638301 core Granulicatella adiacens Granulicatella adiacens ATCC49175 638302 core Selenomonas flueggei Selenomonas flueggei ATCC43531 638303 periphery Thermocrinis albus Thermocrinis albus DSM14484 639030 core Acidobacteria bacterium KBS146 Acidobacteria bacterium KBS 146 639282 core Deferribacter desulfuricans Deferribacter desulfuricans SSM1 639283 periphery Starkeya novella Starkeya novella DSM506 640081 core Dechlorosoma suillum Dechlorosoma suillum PS 640132 periphery Segniliparus rotundus Segniliparus rotundus DSM44985 640510 core Burkholderia sp. CCGE1001 Burkholderia sp. CCGE1001 640511 periphery Burkholderia sp. CCGE1002 Burkholderia sp. CCGE1002 640512 core Burkholderia sp. CCGE1003 Burkholderia sp. CCGE1003 640513 periphery Enterobacter asburiae LF7a Enterobacter asburiae LF7a 641107 periphery Clostridium sp. DLVIII Clostridium sp. DL-VIII 641112 core Ruminococcus flavefaciens FD1 Ruminococcus flavefaciens FD-1 641143 periphery Capnocytophaga granulosa Capnocytophaga granulosa ATCC51502 641146 core Scardovia inopinata Scardovia inopinata F0304 641147 core Simonsiella muelleri Simonsiella muelleri ATCC29453 641149 periphery Neisseria sp. F0314 Neisseria sp. oral taxon 014 str. F0314 641491 periphery Desulfovibrio desulfuricans ND132 Desulfovibrio desulfuricans ND132 641524 periphery Cyclobacterium qasimii Cyclobacterium qasimii M12-11B 641526 core Winogradskyella psychrotolerans Winogradskyella psychrotolerans RS-3 642227 core Tatumella morbirosei Tatumella morbirosei 642492 core Clostridium lentocellum Clostridium lentocellum DSM5427 643473 periphery Microchaete sp. PCC7126 Microchaete sp. PCC7126 643562 periphery Desulfovibrio aespoeensis Desulfovibrio aespoeensis Aspo-2 643648 core Syntrophothermus lipocalidus Syntrophothermus lipocalidus DSM12680 643867 core Marivirga tractuosa Marivirga tractuosa DSM4126 644076 core Silicibacter sp. TrichCH4B Silicibacter sp. TrichCH4B 644107 periphery Silicibacter lacuscaerulensis Silicibacter lacuscaerulensis ITI-1157 644281 periphery Methanocaldococcus sp. FS40622 Methanocaldococcus sp. FS406-22 644282 core Desulfarculus baarsii Desulfarculus baarsii DSM2075 644283 periphery Micromonospora aurantiaca Micromonospora aurantiaca ATCC27029 644284 core Arcanobacterium haemolyticum Arcanobacterium haemolyticum DSM20595 644548 periphery Gordonia neofelifaecis Gordonia neofelifaecis NRRL B-59395 644801 periphery Pseudomonas stutzeri RCH2 Pseudomonas stutzeri RCH2 644966 core Thermaerobacter marianensis Thermaerobacter marianensis DSM12885 644968 periphery Desulfovibrio sp. FW1012B Desulfovibrio sp. FW1012B 645127 periphery Corynebacterium kroppenstedtii Corynebacterium kroppenstedtii DSM44385 645465 periphery Streptomyces sp. e14 Streptomyces sp. e14 645512 periphery Jonquetella anthropi E333E1 Jonquetella anthropi E3_33 E1 645991 core Syntrophobotulus glycolicus Syntrophobotulus glycolicus DSM8271 646529 periphery Desulfosporosinus acidiphilus Desulfosporosinus acidiphilus SJ4 647113 core Methanothermococcus okinawensis Methanothermococcus okinawensis IH1 648757 core Rhodomicrobium vannielii Rhodomicrobium vannielii ATCC17100 648885 periphery Methylobacterium sp. MB200 Methylobacterium sp. MB200 648996 core Thermovibrio ammonificans Thermovibrio ammonificans HB-1 649349 core Leadbetterella byssophila Leadbetterella byssophila DSM17132 649638 core Truepera radiovictrix Truepera radiovictrix DSM17093 649639 periphery Bacillus cellulosilyticus Bacillus cellulosilyticus DSM2522 649743 periphery Actinomyces sp. F0332 Actinomyces sp. oral taxon 848 str. F0332 649747 core Aneurinibacillus aneurinilyticus Aneurinibacillus aneurinilyticus ATCC12856 649754 periphery Corynebacterium ammoniagenes Corynebacterium ammoniagenes DSM20306 649761 core Prevotella veroralis F0319 Prevotella veroralis F0319 649764 periphery Slackia exigua Slackia exigua ATCC700122 649831 periphery Actinoplanes sp. N902109 Actinoplanes sp. N902-109 650150 core Erysipelothrix rhusiopathiae Erysipelothrix rhusiopathiae str. Fujisawa 652103 core Rhodopseudomonas palustris DX1 Rhodopseudomonas palustris DX-1 653045 periphery Streptomyces violaceusniger Streptomyces violaceusniger Tu 4113 653386 periphery Actinomyces sp. F0330 Actinomyces sp. oral taxon 849 str. F0330 653733 core Desulfurispirillum indicum Desulfurispirillum indicum S5 653948 core Albugo laibachii Albugo laibachii 655811 periphery Anaerococcus vaginalis Anaerococcus vaginalis ATCC51170 655812 core Aerococcus viridans ATCC11563 Aerococcus viridans ATCC11563 655813 core Streptococcus oralis ATCC35037 Streptococcus oralis ATCC35037 655815 core Zunongwangia profunda Zunongwangia profunda SM-A87 655981 periphery Pseudogymnoascus destructans Pseudogymnoascus destructans 656024 periphery Frankia symbiont Frankia symbiont of Datisca glomerata 656519 core Halanaerobium hydrogeniformans Halanaerobium hydrogeniformans 657309 periphery Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A 657322 periphery Faecalibacterium prausnitzii SL33 Faecalibacterium prausnitzii SL3/3 658086 periphery Lachnospiraceae bacterium 3157FAACT1 Lachnospiraceae bacterium 3_1_57FAA_CT1 658088 periphery Lachnospiraceae bacterium 9143BFAA Lachnospiraceae bacterium 9_1_43BFAA 658172 core Liberibacter solanacearum Candidatus Liberibacter solanacearum CLso-ZC1 658187 periphery Legionella drancourtii Legionella drancourtii LLAP12 658612 periphery Pseudomonas sp. H2 Pseudomonas sp. H2 658655 core Lachnospiraceae bacterium 1456FAA Lachnospiraceae bacterium 1_4_56FAA 658659 core Erysipelotrichaceae bacterium 3153 Erysipelotrichaceae bacterium 3_1_53 660470 core Mesotoga prima Mesotoga prima MesG1.Ag.4.2 661087 periphery Olsenella sp. F0356 Olsenella sp. oral taxon 809 str. F0356 661367 core Legionella longbeachae Legionella longbeachae NSW150 661478 periphery Fimbriimonas ginsengisoli Fimbriimonas ginsengisoli Gsoil 348 662479 periphery Haloferax mucosum Haloferax mucosum ATCC BAA-1512 662755 periphery Corynebacterium resistens Corynebacterium resistens DSM45100 663278 core Ethanoligenens harbinense Ethanoligenens harbinense YUAN-3 663321 core Regiella insecticola Candidatus Regiella insecticola LSR1 663610 core Methylocapsa aurea Methylocapsa aurea 663932 periphery Acetobacter aceti ATCC23746 Acetobacter aceti ATCC23746 663952 periphery Streptococcus dysgalactiae ATCC27957 Streptococcus dysgalactiae subsp. dysgalactiae ATCC27957 665029 periphery Erwinia amylovora Erwinia amylovora CFBP1430 665571 periphery Spirochaeta thermophila Spirochaeta thermophila DSM6192 665577 periphery Streptomyces viridosporus Streptomyces viridosporus T7A 665942 periphery Desulfovibrio sp. 6146AFAA Desulfovibrio sp. 6_1_46AFAA 665950 periphery Lachnospiraceae bacterium 3146FAA Lachnospiraceae bacterium 3_1_46FAA 665952 periphery Bacillus smithii Bacillus smithii 7_3_47FAA 665956 periphery Subdoligranulum sp. 4354A2FAA Subdoligranulum sp. 4_3_54A2FAA 665959 periphery Bacillus sp. 2A57CT2 Bacillus sp. 2_A_57_CT2 666509 core Planktomarina temperata Planktomarina temperata RCA23 666510 core Acidilobus saccharovorans Acidilobus saccharovorans 345-15 666681 core Methylotenera versatilis Methylotenera versatilis 301 666684 periphery Afipia sp. 1NLS2 Afipia sp. 1NLS2 666685 periphery Rhodanobacter denitrificans Rhodanobacter denitrificans 666686 periphery Bacillus sp. 1NLA3E Bacillus sp. 1NLA3E 667014 core Thermodesulfatator indicus Thermodesulfatator indicus DSM15286 667015 periphery Bacteroides salanitronis Bacteroides salanitronis DSM18170 667121 core Edwardsiella tarda ATCC15947 Edwardsiella tarda ATCC15947 667632 periphery Burkholderia sp. JPY347 Burkholderia sp. JPY347 669262 periphery Mannheimia haemolytica BOVINE Mannheimia haemolytica serotype A2 str. BOVINE 669502 core Profftella armatura Candidatus Profftella armatura 670292 periphery Microvirga aerilata Microvirga aerilata 670307 periphery Hyphomicrobium denitrificans 1NES1 Hyphomicrobium denitrificans 1NES1 670487 core Oceanithermus profundus Oceanithermus profundus DSM14977 671065 periphery Metallosphaera yellowstonensis Metallosphaera yellowstonensis MK1 671143 core Methylomirabilis oxyfera Candidatus Methylomirabilis oxyfera 673860 periphery Aciduliprofundum sp. MAR08339 Aciduliprofundum sp. MAR08-339 673862 periphery Babela massiliensis Candidatus Babela massiliensis 674977 periphery Vibrio alginolyticus 40B Vibrio alginolyticus 40B 675635 core Pseudonocardia dioxanivorans Pseudonocardia dioxanivorans CB1190 675806 periphery Vibrio mimicus Vibrio mimicus MB451 675812 core Grimontia hollisae Grimontia hollisae CIP 101886 675813 periphery Vibrio metschnikovii Vibrio metschnikovii CIP 69.14 675814 periphery Vibrio coralliilyticus Vibrio coralliilyticus ATCC BAA-450 675815 periphery Vibrio sp. RC586 Vibrio sp. RC586 675816 periphery Vibrio orientalis Vibrio orientalis CIP 102891 675817 periphery Photobacterium damselae Photobacterium damselae subsp. damselae CIP 102761 676032 periphery Francisella tularensis novicida Francisella cf. tularensis subsp. novicida 3523 679189 periphery Prevotella timonensis CRIS5CB1 Prevotella timonensis CRIS 5C-B1 679190 periphery Prevotella buccalis ATCC35310 Prevotella buccalis ATCC35310 679191 core Prevotella amnii Prevotella amnii CRIS 21A-A 679192 core Bulleidia extructa Bulleidia extructa W1219 679197 core Segniliparus rugosus Segniliparus rugosus ATCC BAA-974 679199 periphery Alloprevotella rava Alloprevotella rava F0323 679200 core Johnsonella ignava Johnsonella ignava ATCC51276 679201 periphery Selenomonas infelix Selenomonas infelix ATCC43532 679897 periphery Helicobacter mustelae Helicobacter mustelae 12198 679926 core Methanoplanus petrolearius Methanoplanus petrolearius DSM11571 679935 periphery Alistipes finegoldii Alistipes finegoldii DSM17242 679937 periphery Bacteroides coprosuis Bacteroides coprosuis DSM18011 680198 periphery Streptomyces scabiei Streptomyces scabiei 87.22 680646 core Rothia mucilaginosa Rothia mucilaginosa DY-18 682795 periphery Granulicella mallensis Granulicella mallensis MP5ACTX8 683083 periphery Campylobacter jejuni 414 Campylobacter jejuni subsp. jejuni 414 683837 periphery Listeria seeligeri 12b Listeria seeligeri serovar 1/2b str. SLCC3954 684719 core alpha proteobacterium HIMB114 alpha proteobacterium HIMB114 684949 periphery Deinococcus sp. 2009 Deinococcus sp. 2009 685035 core Citromicrobium bathyomarinum Citromicrobium bathyomarinum JL354 685727 core Rhodococcus equi Rhodococcus equi 103S 685778 periphery Sphingomonas sp. PR090111T3T6A Sphingomonas sp. PR090111-T3T-6A 685782 periphery Bartonella rochalimae Bartonella rochalimae ATCC BAA-1498 686340 periphery Methylomicrobium album Methylomicrobium album BG8 686578 periphery Pseudomonas sp. S9 Pseudomonas sp. S9 688245 core Comamonas testosteroni CNB2 Comamonas testosteroni CNB-2 688246 periphery Prevotella multisaccharivorax Prevotella multisaccharivorax DSM17128 688269 periphery Thermotoga thermarum Thermotoga thermarum DSM5069 688270 periphery Cellulophaga algicola Cellulophaga algicola DSM14237 689781 core Oribacterium sp. NK2B42 Oribacterium sp. NK2B42 690585 periphery Rhizobium vignae Rhizobium vignae 690597 periphery Pseudomonas fluorescens NZ007 Pseudomonas fluorescens NZ007 690850 periphery Desulfovibrio africanus Desulfovibrio africanus str. Walvis Bay 691883 core Fonticula alba Fonticula alba 693444 core Enterobacteriaceae bacterium strain Enterobacteriaceae bacterium strain FGI 57 693661 core Archaeoglobus veneficus Archaeoglobus veneficus SNP6 693746 core Oscillibacter valericigenes Oscillibacter valericigenes Sjm18-20 693977 core Deinococcus proteolyticus Deinococcus proteolyticus MRP 693979 periphery Bacteroides helcogenes Bacteroides helcogenes P 36-108 693986 periphery Methylobacterium oryzae Methylobacterium oryzae CBMB20 694427 core Paludibacter propionicigenes Paludibacter propionicigenes WB4 694429 core Pyrolobus fumarii Pyrolobus fumarii 1A 694430 periphery Natronococcus occultus Natronococcus occultus SP4 694431 core Desulfurella acetivorans Desulfurella acetivorans A63 694440 periphery Methanomicrobium mobile Methanomicrobium mobile BP 694569 periphery Aggregatibacter actinomycetemcomitans D7S1 Aggregatibacter actinomycetemcomitans D7S-1 696125 periphery Bartonella clarridgeiae Bartonella clarridgeiae 73 696281 core Desulfotomaculum ruminis Desulfotomaculum ruminis DSM2154 696369 core Desulfotomaculum nigrificans Desulfotomaculum nigrificans DSM574 696747 core Arthrospira platensis NIES39 Arthrospira platensis NIES-39 696748 periphery Actinobacillus suis Actinobacillus suis H91-0380 697281 core Mahella australiensis Mahella australiensis 50-1 BON 697282 core Methylobacter tundripaludum Methylobacter tundripaludum SV96 697284 periphery Paenibacillus larvae Paenibacillus larvae subsp. larvae DSM25430 697303 periphery Thermoanaerobacter wiegelii Thermoanaerobacter wiegelii Rt8.B1 697329 periphery Ruminococcus albus 7 Ruminococcus albus 7 698440 periphery Marssonina brunnea Marssonina brunnea 698737 periphery Staphylococcus lugdunensis HKU0901 Staphylococcus lugdunensis HKU09-01 698757 periphery Pyrobaculum oguniense Pyrobaculum oguniense TE7 698758 periphery Amphibacillus xylanus Amphibacillus xylanus NBRC 15112 698761 periphery Rhizobium tropici Rhizobium tropici CIAT 899 698769 periphery Virgibacillus alimentarius Virgibacillus alimentarius 698961 periphery Gardnerella vaginalis 6119V5 Gardnerella vaginalis 6119V5 698964 periphery Corynebacterium diphtheriae Corynebacterium diphtheriae PW8 699218 periphery Megasphaera genomosp. Megasphaera genomosp. type_1 str. 28L 699246 periphery Clostridiales genomosp. Clostridiales genomosp. BVAB3 str. UPII9-5 699248 periphery Streptococcus ratti Streptococcus ratti FA-1 700015 core Coriobacterium glomerans Coriobacterium glomerans PW2 700508 periphery Mycobacterium neoaurum Mycobacterium neoaurum VKM Ac-1815D 700598 core Niastella koreensis Niastella koreensis GR20-10 701176 periphery Vibrio sp. N418 Vibrio sp. N418 701347 periphery Enterobacter lignolyticus Enterobacter lignolyticus SCF1 701521 periphery Pediococcus claussenii Pediococcus claussenii ATCC BAA-344 702113 periphery Novosphingobium sp. PP1Y Novosphingobium sp. PP1Y 702437 periphery Selenomonas noxia F0398 Selenomonas noxia F0398 702438 periphery Prevotella oulorum F0390 Prevotella oulorum F0390 702450 core Turicibacter sanguinis Turicibacter sanguinis PC909 702459 periphery Bifidobacterium bifidum PRL2010 Bifidobacterium bifidum PRL2010 706191 core Pantoea ananatis LMG20103 Pantoea ananatis LMG 20103 706433 core Solobacterium moorei F0204 Solobacterium moorei F0204 706434 periphery Megasphaera micronuciformis Megasphaera micronuciformis F0359 706436 periphery Capnocytophaga sp. F0087 Capnocytophaga sp. oral taxon 329 str. F0087 706437 periphery Streptococcus anginosus F0211 Streptococcus anginosus F0211 706439 periphery Actinomyces sp. F0337 Actinomyces sp. oral taxon 171 str. F0337 706587 periphery Desulfomonile tiedjei Desulfomonile tiedjei DSM6799 708616 periphery Mycoplasma gallisepticum F Mycoplasma gallisepticum str. F 709032 periphery Sulfuricurvum kujiense Sulfuricurvum kujiense DSM16994 709797 core Bradyrhizobiaceae bacterium SG6C Bradyrhizobiaceae bacterium SG-6C 709986 periphery Deinococcus maricopensis Deinococcus maricopensis DSM21211 709991 core Odoribacter splanchnicus Odoribacter splanchnicus DSM20712 710111 periphery Frankia sp. QA3 Frankia sp. QA3 710243 periphery Colletotrichum fioriniae Colletotrichum fioriniae 710393 periphery Helicobacter suis Helicobacter suis HS1 710421 periphery Mycobacterium chubuense Mycobacterium chubuense NBB4 710685 periphery Mycobacterium rhodesiae NBB3 Mycobacterium rhodesiae NBB3 710686 periphery Mycobacterium smegmatis JS623 Mycobacterium smegmatis JS623 710687 periphery Mycobacterium tusciae Mycobacterium tusciae JS617 710696 core Intrasporangium calvum Intrasporangium calvum DSM43043 711393 periphery Streptomyces sp. GXT6 Streptomyces sp. GXT6 712898 periphery Pantoea vagans Pantoea vagans C9-1 713586 periphery Thioalkalivibrio thiocyanodenitrificans Thioalkalivibrio thiocyanodenitrificans ARhD 1 713587 periphery Thioalkalivibrio thiocyanoxidans ARh4 Thioalkalivibrio thiocyanoxidans ARh4 713605 periphery Lactobacillus iners Lactobacillus iners AB-1 714083 periphery Leucobacter chromiiresistens Leucobacter chromiiresistens JG 31 714313 periphery Lactobacillus sanfranciscensis Lactobacillus sanfranciscensis TMW 1.1304 714943 core Mucilaginibacter paludis Mucilaginibacter paludis DSM18603 714961 core Lysinibacillus fusiformis Lysinibacillus fusiformis ZC1 715226 periphery Asticcacaulis biprosthecum Asticcacaulis biprosthecum C19 715451 periphery Alteromonas sp. SN2 Alteromonas sp. SN2 716541 core Enterobacter cloacae ATCC13047 Enterobacter cloacae subsp. cloacae ATCC13047 716544 core Waddlia chondrophila Waddlia chondrophila WSU 86-1044 716928 periphery Ensifer sojae Ensifer sojae CCBAU 05684 717231 periphery Flexistipes sinusarabici Flexistipes sinusarabici DSM4947 717605 core Thermobacillus composti Thermobacillus composti KWC4 717606 periphery Paenibacillus curdlanolyticus Paenibacillus curdlanolyticus YK9 717772 periphery Thioalkalimicrobium aerophilum Thioalkalimicrobium aerophilum AL3 717773 core Thioalkalimicrobium cyclicum Thioalkalimicrobium cyclicum ALM1 717774 periphery Marinomonas mediterranea Marinomonas mediterranea MMB-1 717785 core Hyphomicrobium sp. MC1 Hyphomicrobium sp. MC1 718252 core Faecalibacterium prausnitzii L26 Faecalibacterium prausnitzii L2-6 720554 core Clostridium clariflavum [Clostridium] clariflavum DSM19732 720555 periphery Bacillus atrophaeus Bacillus atrophaeus 1942 722419 core Pseudoalteromonas haloplanktis ANT505 Pseudoalteromonas haloplanktis ANT/505 722438 periphery Mycoplasma pneumoniae Mycoplasma pneumoniae FH 740709 periphery Idiomarina xiamenensis Idiomarina xiamenensis 10-D-4 741091 periphery Rahnella sp. Y9602 Rahnella sp. Y9602 742159 periphery Achromobacter piechaudii ATCC43553 Achromobacter piechaudii ATCC43553 742722 periphery Collinsella sp. 4847FAA Collinsella sp. 4_8_47FAA 742723 periphery Lachnospiraceae bacterium 2146FAA Lachnospiraceae bacterium 2_1_46FAA 742725 periphery Alistipes indistinctus Alistipes indistinctus YIT 12060 742726 core Barnesiella intestinihominis Barnesiella intestinihominis YIT 11860 742727 periphery Bacteroides oleiciplenus Bacteroides oleiciplenus YIT 12058 742733 periphery Clostridium citroniae [Clostridium] citroniae WAL-17108 742735 periphery Clostridium clostridioforme [Clostridium] clostridioforme 2_1_49FAA 742738 periphery Clostridium orbiscindens Clostridium orbiscindens 1_3_50AFAA 742740 periphery Clostridium symbiosum WAL14163 [Clostridium] symbiosum WAL-14163 742741 core Clostridium symbiosum WAL14673 [Clostridium] symbiosum WAL-14673 742742 periphery Collinsella tanakaei Collinsella tanakaei YIT 12063 742743 periphery Dialister succinatiphilus Dialister succinatiphilus YIT 11850 742765 periphery Dorea formicigenerans 4653AFAA Dorea formicigenerans 4_6_53AFAA 742766 periphery Dysgonomonas gadei Dysgonomonas gadei ATCC BAA-286 742767 core Dysgonomonas mossii Dysgonomonas mossii DSM22836 742817 periphery Odoribacter laneus Odoribacter laneus YIT 12061 742818 periphery Slackia piriformis Slackia piriformis YIT 12062 742821 core Sutterella wadsworthensis 3145B Sutterella wadsworthensis 3_1_45B 742823 periphery Sutterella wadsworthensis 2159BFAA Sutterella wadsworthensis 2_1_59BFAA 743299 periphery Acidithiobacillus ferrivorans Acidithiobacillus ferrivorans SS3 743525 core Thermus scotoductus Thermus scotoductus SA-01 743718 core Isoptericola variabilis Isoptericola variabilis 225 743719 periphery Paenibacillus lactis Paenibacillus lactis 154 743720 periphery Pseudomonas fulva Pseudomonas fulva 12-X 743721 core Pseudoxanthomonas suwonensis 111 Pseudoxanthomonas suwonensis 11-1 743722 core Sphingobacterium sp. 21 Sphingobacterium sp. 21 743836 core Methylocystis sp. SB2 Methylocystis sp. SB2 743965 periphery Mycoplasma putrefaciens KS1 Mycoplasma putrefaciens KS1 743966 periphery Mycoplasma bovoculi Mycoplasma bovoculi M165/69 743974 periphery Moraxella bovoculi Moraxella bovoculi 237 744872 periphery Treponema caldaria Treponema caldaria DSM7334 744979 core Ahrensia sp. R2A130 Ahrensia sp. R2A130 744980 core Roseibium sp. TrichSKD4 Roseibium sp. TrichSKD4 744985 periphery alpha proteobacterium HIMB59 alpha proteobacterium HIMB59 745014 periphery Gammaproteobacteria bacterium HIMB55 gamma proteobacterium HIMB55 745277 core Rahnella aquatilis CIP78.65 Rahnella aquatilis CIP78.65 745310 periphery Sphingomonas sp. MM1 Sphingomonas sp. MM-1 745411 core Gallaecimonas xiamenensis Gallaecimonas xiamenensis 3-C-1 745718 periphery Olleya sp. VCSM12 Olleya sp. VCSM12 745776 periphery Deinococcus gobiensis Deinococcus gobiensis I-0 746128 core Aspergillus fumigatus Aspergillus fumigatus 746697 core Aequorivita sublithincola Aequorivita sublithincola DSM14238 747365 core Thermodesulfobium narugense Thermodesulfobium narugense DSM14796 747682 periphery Mycoplasma alligatoris Mycoplasma alligatoris A21JP2 748224 periphery Faecalibacterium prausnitzii KLE1255 Faecalibacterium cf. prausnitzii KLE1255 748247 periphery Azoarcus sp. KH32C Azoarcus sp. KH32C 748280 periphery Pseudogulbenkiania sp. NH8B Pseudogulbenkiania sp. NH8B 748449 periphery Halobacteroides halobius Halobacteroides halobius DSM5150 748658 periphery Thioalkalivibrio sp. ALSr1 Thioalkalivibrio sp. ALSr1 748671 periphery Lactobacillus crispatus Lactobacillus crispatus ST1 748727 periphery Clostridium ljungdahlii Clostridium ljungdahlii DSM13528 749222 core Nitratifractor salsuginis Nitratifractor salsuginis DSM16511 749414 periphery Streptomyces bingchenggensis Streptomyces bingchenggensis BCW-1 749927 core Amycolatopsis mediterranei Amycolatopsis mediterranei U32 751944 periphery Halobacterium sp. DL1 Halobacterium sp. DL1 751945 periphery Thermus oshimai Thermus oshimai JL-2 751994 periphery Gammaproteobacteria bacterium HIMB30 gamma proteobacterium HIMB30 754027 periphery Treponema phagedenis Treponema phagedenis F0421 754035 periphery Mesorhizobium australicum Mesorhizobium australicum WSM2073 754252 periphery Propionibacterium freudenreichii Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 754331 periphery Escherichia sp. TW09308 Escherichia sp. TW09308 754436 periphery Photobacterium aphoticum Photobacterium aphoticum 754476 core Methylophaga nitratireducenticrescens Methylophaga nitratireducenticrescens 754477 core Methylophaga frappieri Methylophaga frappieri 755178 core Cyanobacterium aponinum Cyanobacterium aponinum PCC10605 755731 periphery Clostridium sp. BNL1100 Clostridium sp. BNL1100 755732 core Fluviicola taffensis Fluviicola taffensis DSM16823 756067 core Microcoleus vaginatus Microcoleus vaginatus FGP-2 756272 periphery Planctomyces brasiliensis Planctomyces brasiliensis DSM5305 756499 core Desulfitobacterium dehalogenans Desulfitobacterium dehalogenans ATCC51507 756883 core Haloferacales archaeon DL31 Haloferacales archaeon DL31 757424 core Herbaspirillum seropedicae Herbaspirillum seropedicae SmR1 759362 core Ketogulonicigenium vulgare Ketogulonicigenium vulgare WSH-001 759913 core Streptococcus dysgalactiae equisimilis Streptococcus dysgalactiae subsp. equisimilis AC-2713 759914 periphery Brachyspira pilosicoli Brachyspira pilosicoli 95/1000 760011 periphery Sphaerochaeta coccoides Sphaerochaeta coccoides DSM17374 760117 periphery Massilia consociata Massilia consociata 760142 core Hippea maritima Hippea maritima DSM10411 760154 periphery Sulfurospirillum barnesii Sulfurospirillum barnesii SES-3 760192 core Haliscomenobacter hydrossis Haliscomenobacter hydrossis DSM1100 760568 core Desulfotomaculum kuznetsovii Desulfotomaculum kuznetsovii DSM6115 761193 core Runella slithyformis Runella slithyformis DSM19594 762051 periphery Leuconostoc kimchii Leuconostoc kimchii IMSNU 11154 762211 core Bifidobacterium stellenboschense Bifidobacterium stellenboschense 762376 core Achromobacter xylosoxidans A8 Achromobacter xylosoxidans A8 762550 periphery Leuconostoc gasicomitatum Leuconostoc gasicomitatum LMG 18811 762903 periphery Pedobacter saltans Pedobacter saltans DSM12145 762948 periphery Rothia dentocariosa Rothia dentocariosa ATCC17931 762963 periphery Actinomyces sp. F0386 Actinomyces sp. oral taxon 170 str. F0386 762966 core Parasutterella excrementihominis Parasutterella excrementihominis YIT 11859 762968 periphery Paraprevotella clara Paraprevotella clara YIT 11840 762982 core Paraprevotella xylaniphila Paraprevotella xylaniphila YIT 11841 762983 core Succinatimonas hippei Succinatimonas hippei YIT 12066 762984 periphery Bacteroides clarus Bacteroides clarus YIT 12056 763034 periphery Bacteroides fluxus Bacteroides fluxus YIT 12057 764291 periphery Streptococcus urinalis 228597 Streptococcus urinalis 2285-97 764298 periphery Streptococcus macacae Streptococcus macacae NCTC 11558 764299 periphery Streptococcus ictaluri Streptococcus ictaluri 707-05 765123 periphery Propionibacterium acnes HL037PA2 Propionibacterium [acnes] HL037PA2 765177 core Desulfurococcus mucosus Desulfurococcus mucosus DSM2162 765420 periphery Oscillochloris trichoides Oscillochloris trichoides DG-6 765698 periphery Mesorhizobium ciceri biovar Mesorhizobium ciceri biovar biserrulae WSM1271 765869 periphery Bdellovibrio bacteriovorus W Bdellovibrio bacteriovorus W 765910 core Marichromatium purpuratum Marichromatium purpuratum 984 765911 core Thiocystis violascens Thiocystis violascens DSM198 765912 core Thioflavicoccus mobilis Thioflavicoccus mobilis 8321 765913 periphery Thiorhodococcus drewsii Thiorhodococcus drewsii AZ1 765914 periphery Thiorhodospira sibirica Thiorhodospira sibirica ATCC700588 765952 periphery Parachlamydia acanthamoebae Parachlamydia acanthamoebae UV-7 766499 periphery Citreicella sp. 357 Citreicella sp. 357 767029 periphery Propionibacterium propionicum Propionibacterium propionicum F0230a 767031 periphery Prevotella denticola Prevotella denticola F0289 767434 periphery Frateuria aurantia Frateuria aurantia DSM6220 767817 periphery Desulfotomaculum gibsoniae Desulfotomaculum gibsoniae DSM7213 768066 periphery Halomonas elongata Halomonas elongata DSM2581 768486 periphery Enterococcus hirae Enterococcus hirae ATCC9790 768670 periphery Calditerrivibrio nitroreducens Calditerrivibrio nitroreducens DSM19672 768671 core Thiocapsa marina Thiocapsa marina 5811 768672 periphery Desulfurococcus fermentans Desulfurococcus fermentans DSM16532 768679 core Thermoproteus tenax Thermoproteus tenax Kra 1 768704 core Desulfosporosinus meridiei Desulfosporosinus meridiei DSM13257 768706 core Desulfosporosinus orientis Desulfosporosinus orientis DSM765 768710 periphery Desulfosporosinus youngiae Desulfosporosinus youngiae DSM17734 768726 periphery Streptococcus mitis 2 F0392 Streptococcus mitis bv. 2 str. F0392 771875 periphery Fervidobacterium pennivorans Fervidobacterium pennivorans DSM9078 794846 periphery Sinorhizobium sp. CCBAU05631 Sinorhizobium sp. CCBAU 05631 794903 periphery Opitutaceae bacterium TAV5 Opitutaceae bacterium TAV5 795359 core Thermodesulfobacterium geofontis Thermodesulfobacterium geofontis OPF15 795666 periphery Ralstonia sp. PBA Ralstonia sp. PBA 795797 periphery Halalkalicoccus jeotgali Halalkalicoccus jeotgali B3 795955 periphery Nesterenkonia sp. F Nesterenkonia sp. F 796606 core Bacillus methanolicus MGA3 Bacillus methanolicus MGA3 796620 periphery Vibrio caribbeanicus Vibrio caribbeanicus ATCC BAA-2122 796940 periphery Peptostreptococcaceae bacterium CM5 Peptostreptococcaceae bacterium CM5 796942 core Stomatobaculum longum Stomatobaculum longum 796945 periphery Oribacterium parvum Oribacterium parvum ACB8 797114 periphery Halosimplex carlsbadense Halosimplex carlsbadense 2-9-1 797209 core Haladaptatus paucihalophilus Haladaptatus paucihalophilus DX253 797210 periphery Halopiger xanaduensis Halopiger xanaduensis SH-6 797299 periphery Halostagnicola larsenii Halostagnicola larsenii XH-48 797302 periphery Halovivax ruber Halovivax ruber XH-70 797303 periphery Natrinema pellirubrum Natrinema pellirubrum DSM15624 797304 periphery Natronobacterium gregoryi Natronobacterium gregoryi SP2 797515 periphery Lactobacillus parafarraginis Lactobacillus parafarraginis F0439 838561 periphery Spiroplasma mirum Spiroplasma mirum ATCC29335 856793 core Micavibrio aeruginosavorus ARL13 Micavibrio aeruginosavorus ARL-13 857087 periphery Methylomonas methanica Methylomonas methanica MC09 857290 periphery Scardovia wiggsiae Scardovia wiggsiae F0424 857293 periphery Caloramator australicus Caloramator australicus RC3 857571 core Moraxella catarrhalis Moraxella catarrhalis O35E 858215 periphery Thermoanaerobacterium xylanolyticum Thermoanaerobacterium xylanolyticum LX-11 858619 periphery Corynebacterium variabile Corynebacterium variabile DSM44702 859194 periphery Mycoplasma haemofelis Mycoplasma haemofelis Ohio2 859653 core alpha proteobacterium HIMB5 alpha proteobacterium HIMB5 859657 periphery Ralstonia solanacearum PSI07 Ralstonia solanacearum PSI07 860228 periphery Capnocytophaga canimorsus Capnocytophaga canimorsus Cc5 861208 core Agrobacterium sp. H133 Agrobacterium sp. H13-3 861299 core Gemmatimonadetes bacterium KBS708 Gemmatimonadetes bacterium KBS708 861360 periphery Arthrobacter arilaitensis Arthrobacter arilaitensis Re117 861450 core Anaeroglobus geminatus Anaeroglobus geminatus F0357 861452 core Fusobacterium sp. F0437 Fusobacterium sp. oral taxon 370 str. F0437 861454 periphery Lachnospiraceae bacterium F0431 Lachnospiraceae bacterium oral taxon 082 str. F0431 861455 periphery Streptococcus sp. F0407 Streptococcus sp. oral taxon 058 str. F0407 861530 periphery Staphylococcus sp. AL1 Staphylococcus sp. AL1 862514 core Pediococcus acidilactici DSM20284 Pediococcus acidilactici DSM20284 862515 periphery Prevotella marshii Prevotella marshii DSM16973 862517 periphery Peptoniphilus duerdenii Peptoniphilus duerdenii ATCC BAA-1640 862751 periphery Streptomyces sp. SirexAAE Streptomyces sp. SirexAA-E 862908 core Bacteriovorax marinus Bacteriovorax marinus SJ 862965 periphery Haemophilus parainfluenzae Haemophilus parainfluenzae T3T1 862967 periphery Streptococcus intermedius Streptococcus intermedius B196 862969 periphery Streptococcus constellatus pharyngis C1050 Streptococcus constellatus subsp. pharyngis C1050 862970 periphery Streptococcus anginosus C1051 Streptococcus anginosus C1051 862971 core Streptococcus anginosus C238 Streptococcus anginosus C238 863239 periphery Corynebacterium nuruki Corynebacterium nuruki S6-4 863365 periphery Xanthomonas hortorum Xanthomonas hortorum pv. carotae str. M081 864051 core Burkholderiales bacterium JOSHI001 Burkholderiales bacterium JOSHI_001 864069 core Microvirga lotononidis Microvirga lotononidis 864073 periphery Herbaspirillum frisingense Herbaspirillum frisingense GSF30 864563 periphery Selenomonas sp. 67H29BP Selenomonas sp. oral taxon 149 str. 67H29BP 864564 periphery Parascardovia denticolens DSM10105 Parascardovia denticolens DSM10105 864565 periphery Eubacterium yurii [Eubacterium] yurii subsp. margaretiae ATCC43715 864567 periphery Streptococcus mitis ATCC6249 Streptococcus mitis ATCC6249 864570 periphery Streptococcus sp. 73H25AP Streptococcus sp. oral taxon 071 str. 73H25AP 864702 core Oscillatoriales cyanobacterium Oscillatoriales cyanobacterium JSC-12 865861 periphery Clostridium ultunense Clostridium ultunense DSM10521 865937 periphery Gillisia limnaea Gillisia limnaea DSM15749 865938 core Weeksella virosa Weeksella virosa DSM16922 866536 periphery Belliella baltica Belliella baltica DSM15883 866546 periphery Schizosaccharomyces cryophilus Schizosaccharomyces cryophilus 866771 periphery Prevotella disiens FB03509AN Prevotella disiens FB035-09AN 866774 periphery Atopobium vaginae PB189T14 Atopobium vaginae PB189-T1-4 866775 periphery Aerococcus urinae Aerococcus urinae ACS-120-V-Col10a 866776 core Veillonella atypica ACS049VSch6 Veillonella atypica ACS-049-V-Sch6 866895 periphery Halobacillus halophilus Halobacillus halophilus DSM2266 867845 periphery Chloroflexus sp. Y3961 Chloroflexus sp. Y-396-1 867900 core Cellulophaga lytica Cellulophaga lytica DSM7489 867902 core Ornithobacterium rhinotracheale Ornithobacterium rhinotracheale DSM15997 867903 periphery Thermaerobacter subterraneus Thermaerobacter subterraneus DSM13965 868131 core Methanobacterium paludis Methanobacterium paludis 868595 periphery Desulfotomaculum carboxydivorans Desulfotomaculum carboxydivorans CO-1-SRB 868864 core Desulfurobacterium thermolithotrophum Desulfurobacterium thermolithotrophum DSM11699 869209 periphery Treponema succinifaciens Treponema succinifaciens DSM2489 869210 core Marinithermus hydrothermalis Marinithermus hydrothermalis DSM14884 869213 periphery Cytophaga fermentans Cytophaga fermentans DSM9555 870187 core Thiothrix nivea Thiothrix nivea DSM5205 870967 periphery Vibrio scophthalmi Vibrio scophthalmi LMG 19158 871585 periphery Acinetobacter calcoaceticus Acinetobacter calcoaceticus PHEA-2 871963 periphery Desulfitobacterium dichloroeliminans Desulfitobacterium dichloroeliminans LMG P-21439 871968 periphery Desulfitobacterium metallireducens Desulfitobacterium metallireducens DSM15288 873447 periphery Streptococcus parauberis NCFD2020 Streptococcus parauberis NCFD 2020 873448 periphery Streptococcus porcinus Streptococcus porcinus str. Jelinkova 176 873449 periphery Streptococcus criceti Streptococcus criceti HS-6 873513 periphery Prevotella buccae ATCC33574 Prevotella buccae ATCC33574 873517 periphery Capnocytophaga ochracea F0287 Capnocytophaga ochracea F0287 873533 periphery Prevotella oralis ATCC33269 Prevotella oralis ATCC33269 875328 core Mycobacterium sp. JDM601 Mycobacterium sp. JDM601 875454 periphery Peptoniphilus rhinitidis Peptoniphilus rhinitidis 1-13 876044 periphery Gammaproteobacteria bacterium IMCC3088 gamma proteobacterium IMCC3088 876269 core Methyloferula stellata Methyloferula stellata AR4 877411 periphery Ruminococcus sp. NK3A76 Ruminococcus sp. NK3A76 877414 core Clostridiales bacterium NK3B98 Clostridiales bacterium NK3B98 877415 periphery Erysipelotrichaceae bacterium NK3D112 Erysipelotrichaceae bacterium NK3D112 877418 periphery Treponema bryantii Treponema bryantii NK4A124 877420 periphery Lachnospiraceae bacterium NK4A136 Lachnospiraceae bacterium NK4A136 877421 core Lachnospiraceae bacterium NK4A144 Lachnospiraceae bacterium NK4A144 877424 periphery Lachnospiraceae bacterium NK4A179 Lachnospiraceae bacterium NK4A179 877455 core Methanobacterium lacus Methanobacterium lacus 879212 periphery Desulfobacter postgatei Desulfobacter postgatei 2ac9 879243 periphery Porphyromonas asaccharolytica Porphyromonas asaccharolytica DSM20707 879305 periphery Anaerococcus prevotii ACS065VCol13 Anaerococcus prevotii ACS-065-V-Col13 879308 periphery Peptoniphilus sp. F0436 Peptoniphilus sp. oral taxon 375 str. F0436 879309 core Veillonella sp. F0412 Veillonella sp. oral taxon 158 str. F0412 879310 periphery Selenomonas sp. F0430 Selenomonas sp. oral taxon 137 str. F0430 880070 core Cyclobacterium marinum Cyclobacterium marinum DSM745 880071 core Flexibacter litoralis Flexibacter litoralis DSM6794 880072 core Desulfobacca acetoxidans Desulfobacca acetoxidans DSM11109 880073 core Caldithrix abyssi Caldithrix abyssi DSM13497 880074 periphery Barnesiella viscericola Barnesiella viscericola DSM18177 880447 core Mycoplasma leachii Mycoplasma leachii PG50 880526 core Rikenella microfusus Rikenella microfusus DSM15922 881621 periphery Listeria ivanovii PAM55 Listeria ivanovii subsp. ivanovii PAM 55 882082 periphery Saccharomonospora cyanea Saccharomonospora cyanea NA-134 882083 periphery Saccharomonospora marina Saccharomonospora marina XMU15 882086 periphery Saccharomonospora xinjiangensis Saccharomonospora xinjiangensis XJ-54 882378 periphery Burkholderia rhizoxinica Burkholderia rhizoxinica HKI 454 883066 periphery Actinobaculum massiliae Actinobaculum massiliae ACS-171-V-Col2 883067 periphery Actinobaculum schaalii Actinobaculum schaalii FB123-CNA-2 883069 periphery Actinomyces europaeus Actinomyces europaeus ACS-120-V-Col10b 883077 periphery Actinomyces turicensis Actinomyces turicensis ACS-279-V-Col4 883078 periphery Afipia broomeae Afipia broomeae ATCC49717 883080 periphery Afipia felis Afipia felis ATCC53690 883081 core Alloiococcus otitis Alloiococcus otitis ATCC51267 883096 core Bergeyella zoohelcum Bergeyella zoohelcum ATCC43767 883103 core Dolosigranulum pigrum Dolosigranulum pigrum ATCC51524 883109 core Eubacterium infirmum Eubacterium infirmum F0142 883110 core Facklamia hominis Facklamia hominis ACS-120-V-Sch10 883112 periphery Facklamia ignava Facklamia ignava CCUG 37419 883113 core Facklamia languida Facklamia languida CCUG 37842 883114 core Helcococcus kunzii Helcococcus kunzii ATCC51366 883126 periphery Massilia timonae Massilia timonae CCUG 45783 883156 periphery Veillonella ratti Veillonella ratti ACS-216-V-Col6b 883158 periphery Prevotella micans Prevotella micans F0438 883168 periphery Streptococcus urinalis FB127CNA2 Streptococcus urinalis FB127-CNA-2 883169 core Turicella otitidis Turicella otitidis ATCC51513 885272 core Jonquetella anthropi DSM22815 Jonquetella anthropi DSM22815 885580 periphery Fukomys damarensis Fukomys damarensis 886293 core Singulisphaera acidiphila Singulisphaera acidiphila DSM18658 886377 core Muricauda ruestringensis Muricauda ruestringensis DSM13258 886379 core Anaerophaga thermohalophila Anaerophaga thermohalophila DSM12881 886882 periphery Paenibacillus polymyxa SC2 Paenibacillus polymyxa SC2 887062 core Hylemonella gracilis ATCC19624 Hylemonella gracilis ATCC19624 887325 core Lachnoanaerobaculum saburreum DSM3986 Lachnoanaerobaculum saburreum DSM3986 887327 core Kingella kingae Kingella kingae ATCC23330 887898 core Lautropia mirabilis Lautropia mirabilis ATCC51599 887929 core Pseudoramibacter alactolyticus Pseudoramibacter alactolyticus ATCC23263 888048 periphery Streptococcus parasanguinis ATCC903 Streptococcus parasanguinis ATCC903 888049 periphery Streptococcus oralis ATCC49296 Streptococcus oralis ATCC49296 888050 periphery Actinomyces cardiffensis Actinomyces cardiffensis F0333 888052 periphery Actinomyces sp. F0310 Actinomyces sp. oral taxon 180 str. F0310 888055 periphery Leptotrichia wadei Leptotrichia wadei F0279 888056 core Actinomyces sp. F0400 Actinomyces sp. oral taxon 448 str. F0400 888059 periphery Capnocytophaga sp. F0234 Capnocytophaga sp. oral taxon 338 str. F0234 888060 core Centipeda periodontii Centipeda periodontii DSM2778 888062 periphery Dialister micraerophilus Dialister micraerophilus DSM19965 888064 periphery Enterococcus italicus Enterococcus italicus DSM15952 888439 periphery Actinomyces neuii BVS029A5 Actinomyces neuii BVS029A5 888727 core Eubacterium sulci Eubacterium sulci ATCC35585 888743 periphery Prevotella multiformis Prevotella multiformis DSM16608 888746 core Streptococcus peroris Streptococcus peroris ATCC700780 888808 periphery Streptococcus sanguinis SK49 Streptococcus sanguinis SK49 888816 periphery Streptococcus sanguinis SK355 Streptococcus sanguinis SK355 888821 periphery Streptococcus sanguinis SK1057 Streptococcus sanguinis SK1057 888832 periphery Prevotella salivae Prevotella salivae DSM15606 888833 periphery Streptococcus australis Streptococcus australis ATCC700641 889201 periphery Streptococcus cristatus Streptococcus cristatus ATCC51100 889204 periphery Streptococcus infantis ATCC700779 Streptococcus infantis ATCC700779 889378 periphery Spirochaeta africana Spirochaeta africana DSM8902 891391 core Lactobacillus acidophilus 30SC Lactobacillus acidophilus 30SC 891968 core Anaerobaculum mobile Anaerobaculum mobile DSM13181 891974 periphery Plautia stali Plautia stali symbiont 903503 core Moranella endobia Candidatus Moranella endobia PCIT 903814 core Eubacterium limosum Eubacterium limosum KIST612 903818 periphery Holophaga foetida Holophaga foetida DSM6591 904144 periphery Gardnerella vaginalis 101 Gardnerella vaginalis 101 904293 periphery Streptococcus downei Streptococcus downei F0415 904294 periphery Streptococcus sp. F0418 Streptococcus sp. oral taxon 056 str. F0418 904296 periphery Oribacterium sp. F0425 Oribacterium sp. oral taxon 108 str. F0425 904306 periphery Streptococcus vestibularis Streptococcus vestibularis F0396 904314 periphery Staphylococcus pettenkoferi Staphylococcus pettenkoferi VCU012 906888 core Nonlabens ulvanivorans Nonlabens ulvanivorans 906968 periphery Treponema brennaborense Treponema brennaborense DSM12168 907239 periphery Helicobacter pylori SouthAfrica7 Helicobacter pylori SouthAfrica7 907348 periphery Treponema saccharophilum Treponema saccharophilum DSM2985 907931 core Leuconostoc fallax Leuconostoc fallax KCTC 3537 908337 core Eremococcus coleocola ACS139VCol8 Eremococcus coleocola ACS-139-V-Col8 908338 core Peptoniphilus harei Peptoniphilus harei ACS-146-V-Sch2b 908339 periphery Lactobacillus oris PB013T23 Lactobacillus oris PB013-T2-3 908340 periphery Clostridium sp. HGF2 Clostridium sp. HGF2 908612 core Alistipes sp. HGB5 Alistipes sp. HGB5 908937 periphery Prevotella dentalis Prevotella dentalis DSM3688 909613 periphery Actinokineospora sp. EG49 Actinokineospora sp. EG49 909663 core Syntrophorhabdus aromaticivorans Syntrophorhabdus aromaticivorans UI 909943 periphery Alphaproteobacterium SAR116 SAR116 cluster alpha proteobacterium HIMB100 910313 periphery Streptococcus pseudoporcinus Streptococcus pseudoporcinus SPIN 20026 910314 core Dialister microaerophilus Dialister microaerophilus UPII 345-E 910964 core Ewingella americana Ewingella americana ATCC33852 911008 core Leclercia adecarboxylata Leclercia adecarboxylata ATCC23216 911045 core Pseudovibrio sp. FOBEG1 Pseudovibrio sp. FO-BEG1 911104 core Weissella cibaria Weissella cibaria KACC 11862 911239 periphery Pseudomonas sp. CF149 Pseudomonas sp. CF149 913325 periphery Lysobacter arseniciresistens Lysobacter arseniciresistens ZS79 913848 periphery Lactobacillus coryniformis KCTC3167 Lactobacillus coryniformis KCTC3167 913865 periphery Desulfosporosinus sp. OT Desulfosporosinus sp. OT 925409 periphery Sediminibacterium sp. OR53 Sediminibacterium sp. OR53 925775 periphery Xanthomonas vesicatoria Xanthomonas vesicatoria ATCC35937 926549 core Adhaeribacter aquaticus Adhaeribacter aquaticus DSM16391 926550 core Caldilinea aerophila Caldilinea aerophila DSM14535 926551 periphery Capnocytophaga cynodegmi Capnocytophaga cynodegmi DSM19736 926554 periphery Deinococcus pimensis Deinococcus pimensis DSM21231 926556 periphery Echinicola vietnamensis Echinicola vietnamensis DSM17526 926559 core Joostella marina Joostella marina DSM19592 926560 core Meiothermus chliarophilus Meiothermus chliarophilus DSM9957 926561 core Orenia marismortui Orenia marismortui DSM5156 926562 periphery Owenweeksia hongkongensis Owenweeksia hongkongensis DSM17368 926564 periphery Promicromonospora kroppenstedtii Promicromonospora kroppenstedtii DSM19349 926566 periphery Terriglobus roseus Terriglobus roseus DSM18391 926567 periphery Thermanaerovibrio velox Thermanaerovibrio velox DSM12556 926569 core Anaerolinea thermophila Anaerolinea thermophila UNI-1 926690 periphery Haloplanus natans Haloplanus natans DSM17983 926692 periphery Halonatronum saccharophilum Halonatronum saccharophilum DSM13868 927658 periphery Alkaliflexus imshenetskii Alkaliflexus imshenetskii DSM15055 927666 periphery Streptococcus oralis Uo5 Streptococcus oralis Uo5 927677 periphery Synechocystis sp. PCC7509 Synechocystis sp. PCC7509 927691 periphery Leuconostoc gelidum KCTC3527 Leuconostoc gelidum KCTC 3527 927704 periphery Selenomonas ruminantium lactilytica Selenomonas ruminantium subsp. lactilytica TAM6421 928210 periphery Bartonella sp. R4 Bartonella sp. R4(2010) 928724 periphery Saccharomonospora glauca Saccharomonospora glauca K62 929506 periphery Clostridium botulinum BKT015925 Clostridium botulinum BKT015925 929556 core Solitalea canadensis Solitalea canadensis DSM3403 929558 periphery Sulfurimonas gotlandica Sulfurimonas gotlandica GD1 929562 core Emticicia oligotrophica Emticicia oligotrophica DSM17448 929703 core Flectobacillus major Flectobacillus major DSM103 929704 core Myroides odoratus Myroides odoratus DSM2801 929712 periphery Patulibacter minatonensis Patulibacter minatonensis DSM18081 929713 periphery Niabella soli Niabella soli DSM19437 929794 periphery Bartonella senegalensis Bartonella senegalensis OS02 930166 periphery Pseudomonas brassicacearum Pseudomonas brassicacearum 930169 periphery Alcanivorax dieselolei Alcanivorax dieselolei B5 930171 periphery Arthrobacter phenanthrenivorans Arthrobacter phenanthrenivorans Sphe3 930945 periphery Sulfolobus islandicus Sulfolobus islandicus REY15A 930946 core Fructobacillus fructosus Fructobacillus fructosus KCTC 3544 931276 periphery Clostridium saccharoperbutylacetonicum Clostridium saccharoperbutylacetonicum N1-4(HMT) 931277 periphery Halococcus morrhuae Halococcus morrhuae DSM1307 931626 core Acetobacterium woodii Acetobacterium woodii DSM1030 931627 periphery Mycobacterium rhodesiae JS60 Mycobacterium rhodesiae JS60 932213 periphery Serratia sp. M24T3 Serratia sp. M24T3 932677 periphery Pantoea ananatis AJ13355 Pantoea ananatis AJ13355 932678 periphery Thermocrinis ruber Thermocrinis ruber DSM12173 933115 core Planococcus donghaensis Planococcus donghaensis MPA1U2 933262 core Desulfosarcina sp. BuS5 Desulfosarcina sp. BuS5 933801 core Acidianus hospitalis Acidianus hospitalis W1 935261 periphery Aminobacter sp. J41 Aminobacter sp. J41 935548 periphery Mesorhizobium loti R88b Mesorhizobium loti R88b 935557 periphery Sinorhizobium arboris Sinorhizobium arboris LMG 14919 935565 periphery Paracoccus pantotrophus Paracoccus pantotrophus J46 935567 periphery Pseudoxanthomonas suwonensis J43 Pseudoxanthomonas suwonensis J43 935836 periphery Bacillus sp. J33 Bacillus sp. J33 935837 periphery Bacillus sp. J37 Bacillus sp. J37 935839 periphery Cellulosimicrobium cellulans Cellulosimicrobium cellulans J36 935840 periphery Chelativorans sp. J32 Chelativorans sp. J32 935845 periphery Paenibacillus sp. J14 Paenibacillus sp. J14 935848 core Paracoccus sp. J39 Paracoccus sp. J39 935863 periphery Luteimonas sp. J29 Luteimonas sp. J29 935866 periphery Nocardioides sp. J54 Nocardioides sp. J54 935948 core Caldanaerobius polysaccharolyticus Caldanaerobius polysaccharolyticus DSM13641 936053 core Rhizopus delemar Rhizopus delemar 936136 periphery Rhizobium leguminosarum 248 Rhizobium leguminosarum bv. viciae 248 936140 periphery Lactobacillus farciminis Lactobacillus farciminis KCTC 3681 936154 periphery Streptococcus parauberis KCTC11537 Streptococcus parauberis KCTC 11537 936155 periphery Helicobacter felis Helicobacter felis ATCC49179 936375 periphery Mogibacterium sp. CM50 Mogibacterium sp. CM50 936455 periphery Bradyrhizobium genosp. Bradyrhizobium genosp. SA-4 str. CB756 936548 periphery Actinomyces sp. ICM47 Actinomyces sp. ICM47 936550 periphery Atopobium sp. BS2 Atopobium sp. BS2 936572 core Selenomonas sp. FOBRC6 Selenomonas sp. FOBRC6 936573 periphery Selenomonas sp. FOBRC9 Selenomonas sp. FOBRC9 936574 periphery Shuttleworthia sp. MSX8B Shuttleworthia sp. MSX8B 936580 periphery Streptococcus sp. CM6 Streptococcus sp. CM6 936589 periphery Veillonella sp. AS16 Veillonella sp. AS16 936596 periphery Lachnoanaerobaculum sp. MSX33 Lachnoanaerobaculum sp. MSX33 937774 periphery Taylorella equigenitalis Taylorella equigenitalis MCE9 937777 periphery Deinococcus peraridilitoris Deinococcus peraridilitoris DSM19664 938278 periphery Clostridiales bacterium 9400853 Clostridiales bacterium 9400853 938288 periphery Clostridiales bacterium 9401234 Clostridiales bacterium 9401234 938289 periphery Clostridiales bacterium 9403326 Clostridiales bacterium 9403326 938293 core Anaerococcus sp. 9402080 Anaerococcus sp. 9402080 938709 core Bacteroidetes bacterium SCGC AAA027N21 Bacteroidetes bacterium SCGC AAA027-N21 940282 periphery Acetobacter pasteurianus 3P3 Acetobacter pasteurianus 3P3 941449 periphery Desulfovibrio sp. X2 Desulfovibrio sp. X2 941639 periphery Bacillus coagulans 26 Bacillus coagulans 2-6 941770 core Lactobacillus fructivorans Lactobacillus fructivorans KCTC3543 941824 core Thermobrachium celere Thermobrachium celere DSM8682 944435 periphery Burkholderia sp. WSM2230 Burkholderia sp. WSM2230 944479 periphery Hippea jasoniae Hippea jasoniae 944480 periphery Hippea alviniae Hippea alviniae EP5-r 944481 periphery Hippea sp. KM1 Hippea sp. KM1 944546 periphery Arcobacter butzleri ED1 Arcobacter butzleri ED-1 944547 periphery Arcobacter sp. L Arcobacter sp. L 944560 periphery Actinomyces sp. F0384 Actinomyces sp. oral taxon 175 str. F0384 944562 periphery Lactobacillus oris F0423 Lactobacillus oris F0423 944564 periphery Veillonella sp. F0422 Veillonella sp. oral taxon 780 str. F0422 944565 periphery Parvimonas sp. F0440 Parvimonas sp. oral taxon 393 str. F0440 945021 core Tetragenococcus halophilus Tetragenococcus halophilus NBRC 12172 945543 periphery Vibrio brasiliensis Vibrio brasiliensis LMG 20546 945550 periphery Vibrio sinaloensis Vibrio sinaloensis DSM21326 945712 periphery Corynebacterium ulcerans Corynebacterium ulcerans BR-AD22 945713 core Ignavibacterium album Ignavibacterium album JCM 16511 946077 core Imtechella halotolerans Imtechella halotolerans K1 946235 periphery Oceanobacillus massiliensis Oceanobacillus massiliensis str. N'diop 946362 periphery Salpingoeca rosetta Salpingoeca rosetta 946483 core Symbiobacter mobilis Candidatus Symbiobacter mobilis CR 948106 periphery Burkholderia dilworthii Burkholderia dilworthii 948565 periphery Avibacterium paragallinarum 72 Avibacterium paragallinarum 72 953739 periphery Streptomyces venezuelae Streptomyces venezuelae ATCC10712 977880 core Cupriavidus taiwanensis Cupriavidus taiwanensis LMG 19424 979556 core Microbacterium testaceum Microbacterium testaceum StLB037 980584 core Flavobacteriaceae bacterium HQM9 Flavobacteriaceae bacterium HQM9 981085 periphery Morus notabilis Morus notabilis 981223 periphery Acinetobacter sp. NCTC 7422 Acinetobacter sp. NCTC 7422 981327 periphery Acinetobacter lwoffii NCTC 5866 Acinetobacter lwoffii NCTC5866 981336 periphery Acinetobacter ursingii Acinetobacter ursingii DSM16037 981369 periphery Streptacidiphilus rugosus Streptacidiphilus rugosus AM-16 981383 core Ornithinibacillus scapharcae Ornithinibacillus scapharcae TW25 981384 periphery Ruegeria conchae Ruegeria conchae 983328 periphery Campylobacter fetus venerealis Campylobacter fetus subsp. venerealis NCTC10354 983544 core Lacinutrix sp. 5H374 Lacinutrix sp. 5H-3-7-4 983545 core Glaciecola sp. 4H37YE5 Glaciecola sp. 4H-3-7+YE-5 983548 periphery Dokdonia sp. 4H375 Dokdonia sp. 4H-3-7-5 983917 periphery Rubrivivax gelatinosus Rubrivivax gelatinosus IL144 983920 periphery Novosphingobium nitrogenifigens Novosphingobium nitrogenifigens DSM19370 984262 periphery Saprospira grandis Saprospira grandis str. Lewin 984892 periphery Staphylococcus pseudintermedius Staphylococcus pseudintermedius ED99 984962 periphery Heterobasidion irregulare Heterobasidion irregulare 985053 periphery Vulcanisaeta moutnovskia Vulcanisaeta moutnovskia 768-28 985054 periphery Ruegeria halocynthiae Ruegeria halocynthiae 985255 periphery Gillisia sp. CAL575 Gillisia sp. CAL575 985665 periphery Paenibacillus terrae Paenibacillus terrae HPL-003 985762 periphery Staphylococcus agnetis Staphylococcus agnetis 985867 core Odyssella thessalonicensis Candidatus Odyssella thessalonicensis L13 986075 core Caldalkalibacillus thermarum Caldalkalibacillus thermarum TA2.A1 987059 core Rubrivivax benzoatilyticus Rubrivivax benzoatilyticus JA2 990073 periphery Lebetimonas sp. JS170 Lebetimonas sp. JS170 990285 periphery Rhizobium grahamii Rhizobium grahamii CCGE 502 991905 core Polymorphum gilvum Polymorphum gilvum SL003B-26A1 992406 core Riemerella anatipestifer Riemerella anatipestifer RA-GD 994479 periphery Saccharopolyspora spinosa Saccharopolyspora spinosa NRRL 18395 994573 core Youngiibacter fragilis Youngiibacter fragilis 232.1 996306 periphery Streptococcus suis R61 Streptococcus suis R61 996637 core Streptomyces griseoaurantiacus Streptomyces griseoaurantiacus M045 997296 periphery Bacillus methanolicus PB1 Bacillus methanolicus PB1 997346 core Desmospora sp. 8437 Desmospora sp. 8437 997350 core Peptoniphilus indolicus Peptoniphilus indolicus ATCC29427 997352 periphery Prevotella nigrescens Prevotella nigrescens ATCC33563 997353 periphery Prevotella pallens Prevotella pallens ATCC700821 997829 periphery Porphyromonas sp. KLE1280 Porphyromonas sp. KLE 1280 997830 periphery Streptococcus infantis X Streptococcus infantis X 997884 periphery Bacteroides nordii Bacteroides nordii CL02T12C05 998088 core Aeromonas veronii Aeromonas veronii B565 998674 core Leucothrix mucor Leucothrix mucor DSM2157 999141 core Halomonas sp. TD01 Halomonas sp. TD01 999411 periphery Clostridium colicanis Clostridium colicanis 209318 999413 periphery Clostridium innocuum [Clostridium] innocuum 2959 999415 core Eggerthia catenaformis Eggerthia catenaformis OT569 999419 periphery Parabacteroides johnsonii Parabacteroides johnsonii CL02T12C29 999423 periphery Selenomonas sp. F0473 Selenomonas sp. F0473 999425 periphery Streptococcus sp. F0442 Streptococcus sp. F0442 999541 periphery Burkholderia gladioli Burkholderia gladioli BSR3 999547 core Leisingera daeponensis Leisingera daeponensis DSM23529 999549 periphery Leisingera caerulea Leisingera caerulea DSM24564 999550 core Pseudophaeobacter arcticus Pseudophaeobacter arcticus DSM23566 999611 periphery Leisingera aquimarina Leisingera aquimarina DSM24565 999630 core Thermoproteus uzoniensis Thermoproteus uzoniensis 768-20 1000565 core Methyloversatilis universalis FAM5 Methyloversatilis universalis FAM5 1000569 periphery Megasphaera sp. UPII135E Megasphaera sp. UPII 135-E 1000570 periphery Streptococcus anginosus SK52 Streptococcus anginosus SK52 1000588 periphery Streptococcus mitis 2 SK95 Streptococcus mitis bv. 2 str. SK95 1001240 periphery Cryobacterium roopkundense Cryobacterium roopkundense 1001530 periphery Photobacterium leiognathi mandapamensis Photobacterium leiognathi subsp. mandapamensis svers.1.1. 1001585 core Pseudomonas mendocina NK01 Pseudomonas mendocina NK-01 1002339 periphery Psychrobacter sp. 1501 Psychrobacter sp. 1501(2011) 1002340 periphery Leisingera sp. ANG1 Leisingera sp. ANG1 1002367 periphery Prevotella stercorea Prevotella stercorea DSM18206 1002672 periphery Pelagibacter sp. IMCC9063 Candidatus Pelagibacter sp. IMCC9063 1002804 periphery Helicobacter bizzozeronii Helicobacter bizzozeronii CIII-1 1002809 core Solibacillus silvestris Solibacillus silvestris StLB046 1003195 periphery Streptomyces cattleya Streptomyces cattleya NRRL8057 1003200 periphery Achromobacter insuavis Achromobacter insuavis AXX-A 1004149 periphery Mesoflavibacter zeaxanth. S86 Mesoflavibacter zeaxanthinifaciens S86 1004785 periphery Alteromonas macleodii Black Alteromonas macleodii str. 'Black Sea 11' 1005048 core Collimonas fungivorans Collimonas fungivorans Ter331 1005057 periphery Buchnera aphidicola Ua Buchnera aphidicola str. Ua 1005058 periphery Gallibacterium anatis Gallibacterium anatis UMN179 1005090 periphery Buchnera aphidicola Ak Buchnera aphidicola str. Ak 1005395 periphery Pseudomonas putida CSV86 Pseudomonas putida CSV86 1005704 periphery Streptococcus oralis SK255 Streptococcus oralis SK255 1005705 periphery Streptococcus infantis SK1076 Streptococcus infantis SK1076 1005962 core Ogataea parapolymorpha Ogataea parapolymorpha 1005994 core Trabulsiella guamensis Trabulsiella guamensis ATCC49490 1005995 periphery Tatumella ptyseos Tatumella ptyseos ATCC33301 1005999 core Leminorella grimontii Leminorella grimontii ATCC33999 1006000 core Kluyvera ascorbata Kluyvera ascorbata ATCC33433 1006004 core Buttiauxella agrestis Buttiauxella agrestis ATCC33320 1006006 periphery Metallosphaera cuprina Metallosphaera cuprina Ar-4 1006581 periphery Mycoplasma gallisepticum S6 Mycoplasma gallisepticum S6 1007096 periphery Oscillibacter ruminantium Oscillibacter ruminantium GH1 1007103 core Paenibacillus elgii Paenibacillus elgii B69 1007104 periphery Sphingomonas sp. S17 Sphingomonas sp. S17 1007105 core Pusillimonas sp. T77 Pusillimonas sp. T7-7 1008453 periphery Streptococcus mitis SK1080 Streptococcus mitis SK1080 1008457 periphery Myroides injenensis Myroides injenensis M09-0166 1008459 periphery Taylorella asinigenitalis Taylorella asinigenitalis MCE3 1009370 core Acetonema longum Acetonema longum DSM6540 1009858 periphery Buchnera aphidicola G002 Buchnera aphidicola str. G002 1026882 periphery Methylophaga aminisulfidivorans Methylophaga aminisulfidivorans MP 1026970 periphery Nannospalax galili Nannospalax galili 1027273 periphery Endozoicomonas montiporae Endozoicomonas montiporae 1027292 core Sporosarcina newyorkensis Sporosarcina newyorkensis 2681 1027371 periphery Gordonia alkanivorans Gordonia alkanivorans NBRC 16433 1027396 periphery Listeria monocytogenes Scott Listeria monocytogenes str. Scott A 1028307 core Enterobacter aerogenes Enterobacter aerogenes KCTC 2190 1028800 periphery Neorhizobium galegae orientalis Neorhizobium galegae bv. orientalis str. HAMBI 540 1028801 periphery Neorhizobium galegae officinalis Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 1028803 periphery Haemophilus haemolyticus M19501 Haemophilus haemolyticus M19501 1028805 periphery Haemophilus haemolyticus M21621 Haemophilus haemolyticus M21621 1028806 periphery Haemophilus haemolyticus M21639 Haemophilus haemolyticus M21639 1029718 core Arthromitus sp. SFBmouseJapan Candidatus Arthromitus sp. SFB-mouse-Japan 1029823 periphery Acinetobacter sp. P838 Acinetobacter sp. P8-3-8 1029824 periphery Kocuria rhizophila P74 Kocuria rhizophila P7-4 1030157 periphery Sphingomonas sp. KC8 Sphingomonas sp. KC8 1031288 core Caloramator sp. ALD01 Caloramator sp. ALD01 1031711 periphery Ralstonia solanacearum Po82 Ralstonia solanacearum Po82 1032480 core Microlunatus phosphovorus Microlunatus phosphovorus NM-1 1033730 periphery Aeromicrobium massiliense Aeromicrobium massiliense JC14 1033732 periphery Alistipes senegalensis Alistipes senegalensis JC50 1033733 periphery Anaerococcus senegalensis Anaerococcus senegalensis JC48 1033734 periphery Bacillus timonensis Bacillus timonensis 1033736 core Brevibacterium senegalense Brevibacterium senegalense 1033737 periphery Clostridium senegalense Clostridium senegalense JC122 1033738 core Kurthia sp. Dielmo Kurthia sp. Dielmo 1033739 periphery Kurthia massiliensis Kurthia massiliensis 1033740 periphery Kurthia sp. JC8E Kurthia sp. JC8E 1033743 periphery Paenibacillus senegalensis Paenibacillus senegalensis JC66 1033744 periphery Peptoniphilus senegalensis Peptoniphilus senegalensis JC140 1033802 core Salinisphaera shabanensis Salinisphaera shabanensis E1L3A 1033806 periphery Halorhabdus tiamatea Halorhabdus tiamatea SARL4B 1033810 core Haloplasma contractile Haloplasma contractile SSD-17B 1033837 periphery Lactobacillus kefiranofaciens Lactobacillus kefiranofaciens ZW3 1033991 periphery Rhizobium leguminosarum CB782 Rhizobium leguminosarum bv. trifolii CB782 1034345 periphery Senegalimassilia anaerobia Senegalimassilia anaerobia JC110 1034347 periphery Bacillus massiliosenegalensis Bacillus massiliosenegalensis JC6 1034769 periphery Paenibacillus sp. HW567 Paenibacillus sp. HW567 1034807 periphery Flavobacterium branchiophilum Flavobacterium branchiophilum FL-15 1034808 periphery Mycoplasma anatis Mycoplasma anatis 1340 1034809 periphery Staphylococcus lugdunensis N920143 Staphylococcus lugdunensis N920143 1034943 periphery Legionella massiliensis Legionella massiliensis 1035184 periphery Streptococcus constellatus pharyngis SK1060 Streptococcus constellatus subsp. pharyngis SK1060 1035187 periphery Streptococcus mitis SK569 Streptococcus mitis SK569 1035189 periphery Streptococcus infantis SK970 Streptococcus infantis SK970 1035191 periphery Brevundimonas diminuta 4704 Brevundimonas diminuta 470-4 1035193 core Capnocytophaga sp. F0382 Capnocytophaga sp. oral taxon 326 str. F0382 1035195 periphery Corynebacterium durum Corynebacterium durum F0235 1035196 periphery Peptostreptococcus anaerobius VPI4330 Peptostreptococcus anaerobius VPI 4330 1035197 periphery Prevotella sp. F0040 Prevotella sp. oral taxon 473 str. F0040 1035308 periphery Dehalobacter sp. FTH1 Dehalobacter sp. FTH1 1035839 periphery Haemophilus sputorum Haemophilus sputorum CCUG 13788 1036674 periphery Idiomarina sp. A28L Idiomarina sp. A28L 1037409 periphery Bradyrhizobium japonicum USDA6 Bradyrhizobium japonicum USDA 6 1037410 periphery Mycoplasma columbinum Mycoplasma columbinum SF7 1038858 periphery Azorhizobium doebereinerae Azorhizobium doebereinerae UFLA1-100 1038859 periphery Bradyrhizobium elkanii WSM1741 Bradyrhizobium elkanii WSM1741 1038860 periphery Bradyrhizobium elkanii WSM2783 Bradyrhizobium elkanii WSM2783 1038862 periphery Bradyrhizobium japonicum USDA124 Bradyrhizobium japonicum USDA 124 1038866 periphery Bradyrhizobium sp. WSM2793 Bradyrhizobium sp. WSM2793 1038867 periphery Bradyrhizobium sp. WSM3983 Bradyrhizobium sp. WSM3983 1038869 periphery Burkholderia mimosarum Burkholderia mimosarum LMG 23256 1038922 periphery Pseudomonas fluorescens Q287 Pseudomonas fluorescens Q2-87 1040982 periphery Mesorhizobium loti CJ3sym Mesorhizobium loti CJ3sym 1040983 periphery Mesorhizobium loti USDA3471 Mesorhizobium loti USDA 3471 1040986 periphery Mesorhizobium sp. WSM3224 Mesorhizobium sp. WSM3224 1040987 periphery Mesorhizobium sp. WSM3626 Mesorhizobium sp. WSM3626 1040989 periphery Bradyrhizobium sp. ARR65 Bradyrhizobium sp. ARR65 1041138 periphery Rhizobium gallicum Rhizobium gallicum bv. gallicum R602sp 1041139 periphery Rhizobium giardinii Rhizobium giardinii bv. giardinii H152 1041142 periphery Rhizobium leguminosarum GB30 Rhizobium leguminosarum bv. viciae GB30 1041146 periphery Rhizobium sullae Rhizobium sullae WSM1592 1041147 periphery Rhizobium leucaenae Rhizobium leucaenae USDA 9039 1041159 periphery Ensifer sp. WSM1721 Ensifer sp. WSM1721 1041504 periphery Arthromitus sp. SFBratYit Candidatus Arthromitus sp. SFB-rat-Yit 1041522 periphery Mycobacterium colombiense Mycobacterium colombiense CECT 3035 1041607 periphery Wickerhamomyces ciferrii Wickerhamomyces ciferrii 1041826 periphery Flavobacterium columnare Flavobacterium columnare ATCC49512 1041930 core Methanocella conradii Methanocella conradii HZ254 1042156 periphery Clostridium sp. SY8519 Clostridium sp. SY8519 1042163 core Brevibacillus laterosporus LMG15441 Brevibacillus laterosporus LMG 15441 1042209 periphery Pseudomonas fluorescens HK44 Pseudomonas fluorescens HK44 1042326 periphery Rhizobium sp. IBUN Rhizobium sp. IBUN 1042375 periphery Marinobacterium stanieri Marinobacterium stanieri S30 1042376 periphery Flavobacteriaceae bacterium S85 Flavobacteriaceae bacterium S85 1042377 periphery Microbulbifer agarilyticus Microbulbifer agarilyticus S89 1042876 periphery Pseudomonas putida S16 Pseudomonas putida S16 1042877 periphery Thermococcus sp. 4557 Thermococcus sp. 4557 1043205 core Serinicoccus profundi Serinicoccus profundi MCCC 1A05965 1043493 core Lysinimicrobium mangrovi Lysinimicrobium mangrovi 1045004 periphery Oenococcus kitaharae Oenococcus kitaharae DSM17330 1045009 periphery Citricoccus sp. CH26A Citricoccus sp. CH26A 1045854 periphery Weissella koreensis Weissella koreensis KACC 15510 1045855 periphery Pseudoxanthomonas spadix Pseudoxanthomonas spadix BD-a59 1045856 periphery Enterobacter cloacae EcWSU1 Enterobacter cloacae EcWSU1 1045858 core Brachyspira intermedia Brachyspira intermedia PWS/A 1046625 periphery Acinetobacter lwoffii WJ10621 Acinetobacter lwoffii WJ10621 1046627 core Bizionia argentinensis Bizionia argentinensis JUB59 1046629 periphery Streptococcus salivarius 57I Streptococcus salivarius 57.I 1046714 core Gayadomonas joobiniege Gayadomonas joobiniege G7 1046724 periphery Marinobacter lipolyticus BF04CF4 Marinobacter lipolyticus BF04_CF-4 1047013 core Aminicenantes bacterium AAA252A02 Aminicenantes bacterium SCGC AAA252-A02 1047171 core Zymoseptoria tritici Zymoseptoria tritici 1048339 core Sporichthya polymorpha Sporichthya polymorpha DSM43042 1048829 periphery Paracoccidioides sp. lutzii Paracoccidioides sp. 'lutzii' 1048830 periphery Mycoplasma iowae Mycoplasma iowae 695 1048834 periphery Alicyclobacillus acidocaldarius Tc41 Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 1048983 core Anditalea andensis Anditalea andensis 1049564 periphery endosymbiont of Tevnia endosymbiont of Tevnia jerichonana (vent Tica) 1050201 core Allobaculum stercoricanis Allobaculum stercoricanis DSM13633 1050202 periphery Actinopolyspora mortivallis Actinopolyspora mortivallis DSM44261 1051006 core Propionibacterium acnes SK182BJCVI Propionibacterium acnes SK182B-JCVI 1051501 periphery Bacillus mojavensis Bacillus mojavensis KCTC 3706 1051613 periphery Verticillium alfalfae Verticillium alfalfae 1051632 periphery Sulfobacillus acidophilus Sulfobacillus acidophilus TPY 1051646 periphery Vibrio tubiashii Vibrio tubiashii ATCC19109 1051985 periphery Neisseria weaveri Neisseria weaveri LMG 5135 1052684 periphery Paenibacillus polymyxa M1 Paenibacillus polymyxa M1 1054213 periphery Acetobacteraceae bacterium AT5844 Acetobacteraceae bacterium AT-5844 1054217 core Thermoplasmatales archaeon Thermoplasmatales archaeon BRNA1 1054460 periphery Streptococcus pseudopneumoniae Streptococcus pseudopneumoniae IS7493 1054860 periphery Streptomyces purpureus Streptomyces purpureus KA281 1055815 periphery Psychrobacter sp. TB67 Psychrobacter sp. TB67 1056495 periphery Caldisphaera lagunensis Caldisphaera lagunensis DSM15908 1056512 periphery Grimontia indica Grimontia indica 1056816 periphery Nocardia sp. BMG51109 Nocardia sp. BMG51109 1056820 periphery Teredinibacter turnerae T7902 Teredinibacter turnerae T7902 1057002 periphery Ensifer sp. BR816 Ensifer sp. BR816 1064535 core Megasphaera elsdenii Megasphaera elsdenii DSM20460 1064537 periphery Brachybacterium paraconglomeratum Brachybacterium paraconglomeratum LC44 1068978 periphery Amycolatopsis methanolica Amycolatopsis methanolica 239 1068980 periphery Amycolatopsis nigrescens Amycolatopsis nigrescens CSC17Ta-90 1069080 periphery Succinispira mobilis Succinispira mobilis DSM6222 1069533 periphery Streptococcus infantarius Streptococcus infantarius subsp. infantarius CJ18 1069534 periphery Lactobacillus ruminis ATCC27782 Lactobacillus ruminis ATCC27782 1070319 core Glomeribacter gigasporarum Candidatus Glomeribacter gigasporarum BEG34 1070774 periphery Halonotius sp. J07HN4 Halonotius sp. J07HN4 1071073 periphery Bacillus sp. NSP222 Bacillus sp. NSP22.2 1071085 periphery haloarchaeon 3A1DGR haloarchaeon 3A1_DGR 1071379 periphery Tetrapisispora blattae Tetrapisispora blattae 1071400 core Lactobacillus buchneri CD034 Lactobacillus buchneri CD034 1071679 periphery Burkholderia grimmiae Burkholderia grimmiae 1072685 periphery Basilea psittacipulmonis Basilea psittacipulmonis DSM24701 1073999 core Cronobacter condimenti Cronobacter condimenti 1330 1074451 periphery Lactobacillus curvatus Lactobacillus curvatus CRL 705 1074488 periphery Brachybacterium squillarum Brachybacterium squillarum M-6-3 1074889 periphery Blattabacterium sp. MADAR Blattabacterium sp. (Mastotermes darwiniensis) 1075090 periphery Gordonia amarae Gordonia amarae NBRC 15530 1075399 periphery Blattabacterium sp. Cpu Blattabacterium sp. (Cryptocercus punctulatus) 1076550 periphery Pantoea rwandensis Pantoea rwandensis 1077144 periphery Dietzia alimentaria Dietzia alimentaria 72 1077285 periphery Bacteroides faecis Bacteroides faecis MAJ27 1077972 periphery Arthrobacter globiformis Arthrobacter globiformis NBRC 12137 1077974 periphery Gordonia effusa Gordonia effusa NBRC 100432 1078020 periphery Mycobacterium thermoresistibile Mycobacterium thermoresistibile ATCC19527 1078083 periphery Staphylococcus sp. HGB0015 Staphylococcus sp. HGB0015 1078085 core Paenisporosarcina sp. HGH0030 Paenisporosarcina sp. HGH0030 1079460 periphery Rhizobium mongolense Rhizobium mongolense USDA 1844 1079986 periphery Streptomyces chartreusis Streptomyces chartreusis NRRL12338 1080067 periphery Citrobacter sp. S77 Citrobacter sp. S-77 1081640 periphery Sphingomonas elodea Sphingomonas elodea ATCC31461 1081644 periphery Aquiluna sp. IMCC13023 Candidatus Aquiluna sp. IMCC13023 1082705 core Lonsdalea quercina Lonsdalea quercina subsp. quercina 1082931 core Pelagibacterium halotolerans Pelagibacterium halotolerans B2 1082932 periphery Agrobacterium tumefaciens CCNWGS0286 Agrobacterium tumefaciens CCNWGS0286 1082933 periphery Mesorhizobium amorphae Mesorhizobium amorphae CCNWGS0123 1085623 periphery Glaciecola nitratireducens Glaciecola nitratireducens FR1064 1086011 periphery Flavobacterium frigoris Flavobacterium frigoris PS1 1087448 periphery Exiguobacterium antarcticum Exiguobacterium antarcticum B7 1087481 periphery Paenibacillus peoriae Paenibacillus peoriae KCTC 3763 1088721 periphery Novosphingobium pentaromativorans Novosphingobium pentaromativorans US6-1 1088868 periphery Commensalibacter intestini Commensalibacter intestini A911 1088869 periphery Gluconobacter morbifer Gluconobacter morbifer G707 1089439 core Fangia hongkongensis Fangia hongkongensis FSC776 1089447 periphery Aggregatibacter actinomycetemcomitans RhAA1 Aggregatibacter actinomycetemcomitans RhAA1 1089453 periphery Gordonia sputi Gordonia sputi NBRC 100414 1089455 periphery Mobilicoccus pelagius Mobilicoccus pelagius NBRC 104925 1089544 periphery Amycolatopsis benzoatilytica Amycolatopsis benzoatilytica AK 16/65 1089545 periphery Amycolatopsis balhimycina Amycolatopsis balhimycina FH 1894 1089546 periphery Actinopolyspora halophila Actinopolyspora halophila DSM43834 1089547 core Rudanella lutea Rudanella lutea DSM19387 1089548 core Thermicanus aegyptius Thermicanus aegyptius DSM12793 1089549 core Haloglycomyces albus Haloglycomyces albus DSM45210 1089550 periphery Salisaeta longa Salisaeta longa DSM21114 1089551 core Geminicoccus roseus Geminicoccus roseus DSM18922 1089552 core Rhodovibrio salinarum Rhodovibrio salinarum DSM9154 1089553 core Thermacetogenium phaeum Thermacetogenium phaeum DSM12270 1090318 periphery Sphingomonas phyllosphaerae 52 Sphingomonas phyllosphaerae 5.2 1090319 periphery Sphingomonas phyllosphaerae FA2 Sphingomonas phyllosphaerae FA2 1090320 periphery Sphingomonas melonis Sphingomonas melonis DAPP-PG 224 1094184 periphery Xanthomonas campestris musacearum Xanthomonas campestris pv. musacearum NCPPB 4379 1094466 periphery Flavobacterium indicum Flavobacterium indicum GPTSA100-9 1094489 periphery Bartonella australis Bartonella australis Aust/NH1 1094491 periphery Bartonella bovis Bartonella bovis 91-4 1094496 periphery Bartonella schoenbuchensis Bartonella schoenbuchensis m07a 1094497 periphery Bartonella vinsonii berkhoffii Bartonella vinsonii subsp. berkhoffii str. Winnie 1094508 core Thermoanaerobacterium saccharolyticum Thermoanaerobacterium saccharolyticum JW/SL-YS485 1094551 periphery Bartonella alsatica Bartonella alsatica IBS 382 1094553 periphery Bartonella doshiae Bartonella doshiae NCTC 12862 1094556 periphery Bartonella rattimassiliensis Bartonella rattimassiliensis 15908 1094557 periphery Bartonella melophagi Bartonella melophagi K-2C 1094558 periphery Bartonella tamiae Bartonella tamiae Th239 1094560 periphery Bartonella taylorii Bartonella taylorii 8TBB 1094561 core Bartonella vinsonii arupensis Bartonella vinsonii subsp. arupensis Pm136co 1094563 periphery Bartonella washoensis Bartonella washoensis Sb944nv 1094715 periphery Fluoribacter dumoffii Fluoribacter dumoffii NY 23 1094755 core Bartonella sp. DB56 Bartonella sp. DB5-6 1094980 core Methanolobus psychrophilus Methanolobus psychrophilus R15 1095726 periphery Streptococcus sp. SK140 Streptococcus sp. SK140 1095727 periphery Streptococcus sp. SK643 Streptococcus sp. SK643 1095737 periphery Streptococcus mitis SK579 Streptococcus mitis SK579 1095738 periphery Streptococcus oralis SK1074 Streptococcus oralis SK1074 1095743 periphery Haemophilus paraphrohaemolyticus Haemophilus paraphrohaemolyticus HK411 1095747 periphery Fusobacterium necrophorum funduliforme Fusobacterium necrophorum subsp. funduliforme ATCC51357 1095749 periphery Pasteurella bettyae Pasteurella bettyae CCUG 2042 1095750 periphery Lachnoanaerobaculum saburreum F0468 Lachnoanaerobaculum saburreum F0468 1095752 periphery Prevotella sp. F0472 Prevotella sp. oral taxon 306 str. F0472 1095767 periphery Cellulomonas massiliensis Cellulomonas massiliensis JC225 1095769 periphery Herbaspirillum massiliense Herbaspirillum massiliense JC206 1095770 periphery Peptoniphilus timonensis Peptoniphilus timonensis JC401 1095772 core Timonella senegalensis Timonella senegalensis JC301 1096546 periphery Methylobacterium sp. GXF4 Methylobacterium sp. GXF4 1096756 periphery Arthrobacter sp. PAO19 Arthrobacter sp. PAO19 1096769 periphery Pelagibacter ubique HIMB083 Candidatus Pelagibacter ubique HIMB083 1096930 periphery Novosphingobium lindaniclasticum Novosphingobium lindaniclasticum LE124 1097668 core Burkholderia sp. YI23 Burkholderia sp. YI23 1100720 periphery Limnohabitans sp. Rim28 Limnohabitans sp. Rim28 1100721 core Limnohabitans sp. Rim47 Limnohabitans sp. Rim47 1101188 periphery Arthrobacter sp. MAN2 Arthrobacter sp. MA-N2 1101189 periphery Paracoccus sp. N5 Paracoccus sp. N5 1101190 periphery Methylopila sp. M107 Methylopila sp. M107 1101191 periphery Methylobacterium sp. 10 Methylobacterium sp. 10 1101192 periphery Methylobacterium sp. 77 Methylobacterium sp. 77 1101195 periphery Methylophilaceae bacterium 11 Methylophilaceae bacterium 11 1104324 periphery Pyrobaculum sp. 1860 Pyrobaculum sp. 1860 1104325 core Enterococcus faecium NRRLB2354 Enterococcus faecium NRRL B-2354 1105029 core Actinomyces sp. ICM39 Actinomyces sp. ICM39 1105031 periphery Clostridium sp. MSTE9 Clostridium sp. MSTE9 1105110 periphery Rickettsia australis Rickettsia australis str. Cutlack 1105367 core Paenirhodobacter enshiensis Paenirhodobacter enshiensis 1107311 periphery Flavobacterium enshiense Flavobacterium enshiense DK69 1108045 periphery Gordonia rhizosphera Gordonia rhizosphera NBRC 16068 1108849 periphery Penicillium rubens Penicillium rubens 1109445 periphery Pseudomonas stutzeri SDMLAC Pseudomonas stutzeri SDM-LAC 1110502 core Tistrella mobilis Tistrella mobilis KA081020-065 1110697 periphery Nocardia asteroides Nocardia asteroides NBRC 15531 1111069 periphery Thermus sp. CCBUS3UF1 Thermus sp. CCB_US3_UF1 1111121 periphery Atopobium sp. BV3Ac4 Atopobium sp. BV3Ac4 1111131 periphery Propionimicrobium sp. BV2F7 Propionimicrobium sp. BV2F7 1111134 periphery Peptoniphilus sp. BV3C26 Peptoniphilus sp. BV3C26 1111135 periphery Coriobacteriaceae bacterium BV3Ac1 Coriobacteriaceae bacterium BV3Ac1 1111454 periphery Megasphaera sp. BV3C161 Megasphaera sp. BV3C16-1 1111479 core Alicyclobacillus pomorum Alicyclobacillus pomorum DSM14955 1111728 core Budvicia aquatica Budvicia aquatica DSM5075 1111729 periphery Corynebacterium sputi Corynebacterium sputi DSM45148 1111730 periphery Flavobacterium antarcticum Flavobacterium antarcticum DSM19726 1111732 periphery Ignatzschineria larvae Ignatzschineria larvae DSM13226 1112204 core Gordonia polyisoprenivorans Gordonia polyisoprenivorans VH2 1112209 core Psychrobacter sp. PAMC21119 Psychrobacter sp. PAMC 21119 1112212 periphery Sphingomonas echinoides Sphingomonas echinoides ATCC14820 1112214 periphery Sphingomonas sp. PAMC26605 Sphingomonas sp. PAMC 26605 1112216 periphery Sphingomonas sp. PAMC26617 Sphingomonas sp. PAMC 26617 1112217 periphery Pseudomonas psychrotolerans Pseudomonas psychrotolerans L19 1112274 periphery Methylophilus sp. 5 Methylophilus sp. 5 1114856 periphery Natronorubrum tibetense Natronorubrum tibetense GA33 1114922 periphery Citrobacter farmeri Citrobacter farmeri GTC 1319 1114959 periphery Saccharomonospora azurea Saccharomonospora azurea SZMC 14600 1114964 periphery Sphingobium baderi Sphingobium baderi LL03 1114965 periphery Streptococcus parasanguinis FW213 Streptococcus parasanguinis FW213 1114970 periphery Pseudomonas fluorescens F113 Pseudomonas fluorescens F113 1114972 periphery Lactobacillus rossiae Lactobacillus rossiae DSM15814 1115512 periphery Escherichia hermannii Escherichia hermannii NBRC 105704 1115515 periphery Escherichia vulneris Escherichia vulneris NBRC 102420 1115632 periphery Arthrobacter sp. 31Y Arthrobacter sp. 31Y 1115803 periphery Actinomyces naeslundii Actinomyces naeslundii str. Howell 279 1116231 periphery Streptococcus macedonicus Streptococcus macedonicus ACA-DC 198 1116232 periphery Streptomyces acidiscabies Streptomyces acidiscabies 84-104 1116369 periphery Hoeflea sp. 108 Hoeflea sp. 108 1116375 periphery Vibrio sp. EJY3 Vibrio sp. EJY3 1116472 periphery Methyloglobulus morosus Methyloglobulus morosus KoM1 1117108 periphery Paenibacillus alvei Paenibacillus alvei TS-15 1117314 core Pseudoalteromonas citrea Pseudoalteromonas citrea NCIMB 1889 1117315 periphery Pseudoalteromonas haloplanktis ATCC14393 Pseudoalteromonas haloplanktis ATCC14393 1117318 core Pseudoalteromonas rubra Pseudoalteromonas rubra ATCC29570 1117319 core Pseudoalteromonas spongiae Pseudoalteromonas spongiae UST010723-006 1117379 periphery Bacillus bataviensis Bacillus bataviensis LMG 21833 1117644 periphery Mycoplasma canis Mycoplasma canis PG 14 1117647 core Simiduia agarivorans Simiduia agarivorans SA1 1117943 periphery Sinorhizobium fredii HH103 Sinorhizobium fredii HH103 1117958 periphery Pseudomonas extremaustralis Pseudomonas extremaustralis 14-3 substr. 14-3b 1118054 periphery Brevibacillus massiliensis Brevibacillus massiliensis 1118055 core Anaerococcus sp. PH9 Anaerococcus sp. PH9 1118057 periphery Peptoniphilus grossensis Peptoniphilus grossensis ph5 1118058 periphery Actinomyces sp. ph3 Actinomyces sp. ph3 1118059 periphery Kallipyga massiliensis Kallipyga massiliensis ph2 1118060 periphery Enorma massiliensis Enorma massiliensis phI 1118153 periphery Halomonas sp. GFAJ1 Halomonas sp. GFAJ-1 1118235 periphery Stenotrophomonas maltophilia PML168 Stenotrophomonas maltophilia PML168 1118964 periphery Mycoplasma hyorhinis SK76 Mycoplasma hyorhinis SK76 1120705 periphery Sphingopyxis sp. LC363 Sphingopyxis sp. LC363 1120746 core Bacterium sp. MS4 Bacterium sp. MS4 1120792 core Methylopila sp. 73B Methylopila sp. 73B 1120797 periphery Mycobacterium sp. 141 Mycobacterium sp. 141 1120917 periphery Acaricomes phytoseiuli Acaricomes phytoseiuli DSM14247 1120919 periphery Acetobacter nitrogenifigens Acetobacter nitrogenifigens DSM23921 1120925 periphery Acinetobacter bouvetii Acinetobacter bouvetii DSM14964 1120931 periphery Actinobacillus capsulatus Actinobacillus capsulatus DSM19761 1120933 periphery Actinobaculum urinale Actinobaculum urinale DSM15805 1120934 periphery Actinokineospora enzanensis Actinokineospora enzanensis DSM44649 1120936 periphery Actinomadura atramentaria Actinomadura atramentaria DSM43919 1120941 periphery Actinomyces dentalis Actinomyces dentalis DSM19115 1120942 periphery Actinomyces georgiae Actinomyces georgiae DSM6843 1120944 periphery Actinomyces israelii Actinomyces israelii DSM43320 1120945 periphery Actinomyces neuii DSM8576 Actinomyces neuii subsp. neuii DSM8576 1120946 periphery Actinomyces suimastitidis Actinomyces suimastitidis DSM15538 1120947 periphery Actinomyces vaccimaxillae Actinomyces vaccimaxillae DSM15804 1120948 periphery Actinomycetospora chiangmaiensis Actinomycetospora chiangmaiensis DSM45062 1120949 periphery Actinoplanes globisporus Actinoplanes globisporus DSM43857 1120950 periphery Actinopolymorpha alba Actinopolymorpha alba DSM45243 1120951 periphery Aequorivita capsosiphonis Aequorivita capsosiphonis DSM23843 1120953 core Aestuariibacter salexigens Aestuariibacter salexigens DSM15300 1120954 periphery Aestuariimicrobium kwangyangense Aestuariimicrobium kwangyangense DSM21549 1120956 periphery Afifella pfennigii Afifella pfennigii DSM17143 1120958 periphery Agrococcus lahaulensis Agrococcus lahaulensis DSM17612 1120959 core Agromyces italicus Agromyces italicus DSM16388 1120960 periphery Agromyces subbeticus Agromyces subbeticus DSM16689 1120963 core Algicola sagamiensis Algicola sagamiensis DSM14643 1120965 periphery Algoriphagus mannitolivorans Algoriphagus mannitolivorans DSM15301 1120966 periphery Algoriphagus marincola DSM16067 Algoriphagus marincola DSM16067 1120968 periphery Algoriphagus vanfongensis Algoriphagus vanfongensis DSM17529 1120970 core Aliagarivorans taiwanensis Aliagarivorans taiwanensis DSM22990 1120971 periphery Alicyclobacillus contaminans Alicyclobacillus contaminans DSM17975 1120972 periphery Alicyclobacillus herbarius Alicyclobacillus herbarius DSM13609 1120973 periphery Alicyclobacillus pohliae Alicyclobacillus pohliae DSM22757 1120977 core Alkanindiges illinoisensis Alkanindiges illinoisensis DSM15370 1120978 core Allofustis seminis Allofustis seminis DSM15817 1120979 core Alloscardovia omnicolens Alloscardovia omnicolens DSM21503 1120980 core Alysiella crassa Alysiella crassa DSM2578 1120983 core Amorphus coralli Amorphus coralli DSM19760 1120985 core Anaeroarcus burkinensis Anaeroarcus burkinensis DSM6283 1120988 periphery Anaerobiospirillum succiniciproducens Anaerobiospirillum succiniciproducens DSM6400 1120998 periphery Anaerovorax odorimutans Anaerovorax odorimutans DSM5092 1120999 core Andreprevotia chitinilytica Andreprevotia chitinilytica DSM18519 1121004 core Aquaspirillum serpens Aquaspirillum serpens DSM68 1121007 periphery Aquimarina muelleri Aquimarina muelleri DSM19832 1121011 periphery Arenibacter certesii Arenibacter certesii DSM19833 1121012 periphery Arenibacter latericius Arenibacter latericius DSM15913 1121013 periphery Arenimonas composti Arenimonas composti TR7-09 1121015 periphery Arenimonas oryziterrae Arenimonas oryziterrae DSM21050 1121017 periphery Arsenicicoccus bolidensis Arsenicicoccus bolidensis DSM15745 1121019 periphery Arthrobacter castelli Arthrobacter castelli DSM16402 1121020 periphery Arthrobacter sanguinis Arthrobacter sanguinis DSM21259 1121022 periphery Asticcacaulis benevestitus Asticcacaulis benevestitus DSM16100 1121024 core Atopococcus tabaci Atopococcus tabaci DSM17538 1121028 periphery Aureimonas ureilytica Aureimonas ureilytica DSM18598 1121033 core Azospirillum halopraeferens Azospirillum halopraeferens DSM3675 1121035 core Azovibrio restrictus Azovibrio restrictus DSM23866 1121085 periphery Bacillus aidingensis Bacillus aidingensis DSM18341 1121087 periphery Bacillus chagannorensis Bacillus chagannorensis DSM18086 1121090 periphery Bacillus fordii Bacillus fordii DSM16014 1121091 core Bacillus gelatini Bacillus gelatini DSM15865 1121094 periphery Bacteroides barnesiae Bacteroides barnesiae DSM18169 1121097 periphery Bacteroides graminisolvens Bacteroides graminisolvens DSM19988 1121098 periphery Bacteroides massiliensis B84634 Bacteroides massiliensis B84634 1121100 periphery Bacteroides pyogenes DSM20611 Bacteroides pyogenes DSM20611 1121101 periphery Bacteroides salyersiae Bacteroides salyersiae WAL 10018 1121104 periphery Balneola vulgaris Balneola vulgaris DSM17893 1121105 core Bavariicoccus seileri Bavariicoccus seileri DSM19936 1121106 periphery Belnapia moabensis Belnapia moabensis DSM16746 1121115 periphery Blautia wexlerae Blautia wexlerae DSM19850 1121116 core Brachymonas chironomi Brachymonas chironomi DSM19884 1121121 periphery Brevibacillus laterosporus DSM25 Brevibacillus laterosporus DSM25 1121123 periphery Brevundimonas aveniformis Brevundimonas aveniformis DSM17977 1121124 periphery Brevundimonas bacteroides Brevundimonas bacteroides DSM4726 1121127 periphery Burkholderia nodosa Burkholderia nodosa DSM21604 1121129 core Butyricimonas synergistica Butyricimonas synergistica DSM23225 1121267 periphery Campylobacter cuniculorum Campylobacter cuniculorum DSM23162 1121271 core Gemmobacter nectariphilus Gemmobacter nectariphilus DSM15620 1121272 periphery Catelliglobosispora koreensis Catelliglobosispora koreensis DSM44566 1121285 periphery Chryseobacterium caeni Chryseobacterium caeni DSM17710 1121286 periphery Chryseobacterium daeguense Chryseobacterium daeguense DSM19388 1121287 periphery Chryseobacterium gregarium Chryseobacterium gregarium DSM19109 1121288 periphery Chryseobacterium palustre Chryseobacterium palustre DSM21579 1121289 core Clostridiisalibacter paucivorans Clostridiisalibacter paucivorans DSM22131 1121296 periphery Clostridium aminophilum [Clostridium] aminophilum DSM10710 1121324 periphery Clostridium litorale [Clostridium] litorale DSM5388 1121333 core Clostridium saccharogumia [Clostridium] saccharogumia DSM17460 1121334 periphery Clostridium sporosphaeroides [Clostridium] sporosphaeroides DSM1294 1121335 periphery Clostridium stercorarium [Clostridium] stercorarium subsp. stercorarium DSM8532 1121342 periphery Clostridium tyrobutyricum Clostridium tyrobutyricum DSM2637 1121344 periphery Clostridium viride [Clostridium] viride DSM6836 1121346 core Cohnella laeviribosi Cohnella laeviribosi DSM21336 1121351 periphery Conchiformibius kuhniae Conchiformibius kuhniae DSM17694 1121352 core Conchiformibius steedae Conchiformibius steedae DSM2580 1121353 periphery Corynebacterium callunae Corynebacterium callunae DSM20147 1121354 periphery Corynebacterium capitovis Corynebacterium capitovis DSM44611 1121355 periphery Corynebacterium caspium Corynebacterium caspium DSM44850 1121356 periphery Corynebacterium ciconiae Corynebacterium ciconiae DSM44920 1121360 periphery Corynebacterium freiburgense Corynebacterium freiburgense DSM45254 1121362 periphery Corynebacterium halotolerans Corynebacterium halotolerans YIM 70093 1121363 periphery Corynebacterium lubricantis Corynebacterium lubricantis DSM45231 1121364 periphery Corynebacterium massiliense Corynebacterium massiliense DSM45435 1121365 periphery Corynebacterium mastitidis Corynebacterium mastitidis DSM44356 1121366 periphery Corynebacterium pilosum Corynebacterium pilosum DSM20521 1121367 periphery Corynebacterium propinquum Corynebacterium propinquum DSM44285 1121370 periphery Corynebacterium ulceribovis Corynebacterium ulceribovis DSM45146 1121372 periphery Gryllotalpicola ginsengisoli Gryllotalpicola ginsengisoli DSM22003 1121373 periphery Cytophaga aurantiaca Cytophaga aurantiaca DSM3654 1121374 core Dasania marina Dasania marina DSM21967 1121377 periphery Deinococcus apachensis Deinococcus apachensis DSM19763 1121378 periphery Deinococcus aquatilis Deinococcus aquatilis DSM23025 1121380 periphery Deinococcus frigens Deinococcus frigens DSM12807 1121381 periphery Deinococcus marmoris Deinococcus marmoris DSM12784 1121382 periphery Deinococcus misasensis Deinococcus misasensis DSM22328 1121385 periphery Demetria terragena Demetria terragena DSM11295 1121396 core Desulfobacter curvatus Desulfobacter curvatus DSM3379 1121403 periphery Desulfobulbus japonicus Desulfobulbus japonicus DSM18378 1121405 periphery Desulfococcus multivorans Desulfococcus multivorans DSM2059 1121406 periphery Desulfocurvus vexinensis Desulfocurvus vexinensis DSM17965 1121413 periphery Desulfonatronovibrio hydrogenovorans Desulfonatronovibrio hydrogenovorans DSM9292 1121422 periphery Desulfotomaculum alcoholivorax Desulfotomaculum alcoholivorax DSM16058 1121423 periphery Desulfotomaculum alkaliphilum Desulfotomaculum alkaliphilum DSM12257 1121428 periphery Desulfotomaculum hydrothermale Desulfotomaculum hydrothermale Lam5 1121430 periphery Desulfotomaculum thermocisternum Desulfotomaculum thermocisternum DSM10259 1121434 periphery Desulfovibrio acrylicus Desulfovibrio acrylicus DSM10141 1121438 periphery Desulfovibrio alcoholivorans Desulfovibrio alcoholivorans DSM5433 1121439 periphery Desulfovibrio alkalitolerans Desulfovibrio alkalitolerans DSM16529 1121440 periphery Desulfovibrio aminophilus Desulfovibrio aminophilus DSM12254 1121441 periphery Desulfovibrio bastinii Desulfovibrio bastinii DSM16055 1121445 periphery Desulfovibrio desulfuricans DSM642 Desulfovibrio desulfuricans subsp. desulfuricans DSM642 1121447 periphery Desulfovibrio frigidus Desulfovibrio frigidus DSM17176 1121448 periphery Desulfovibrio gigas Desulfovibrio gigas DSM1382 1121451 periphery Desulfovibrio hydrothermalis Desulfovibrio hydrothermalis AM13 1121456 periphery Desulfovibrio longus Desulfovibrio longus DSM6739 1121459 periphery Desulfovibrio oxyclinae Desulfovibrio oxyclinae DSM11498 1121468 core Desulfovirgula thermocuniculi Desulfovirgula thermocuniculi DSM16036 1121472 core Desulfurispora thermophila Desulfurispora thermophila DSM16022 1121479 core Donghicola xiamenensis Donghicola xiamenensis DSM18339 1121481 periphery Dyadobacter alkalitolerans Dyadobacter alkalitolerans DSM23607 1121859 periphery Echinicola pacifica Echinicola pacifica DSM19836 1121861 periphery Elioraea tepidiphila Elioraea tepidiphila DSM17972 1121864 periphery Enterococcus cecorum Enterococcus cecorum DSM20682 1121865 periphery Enterococcus columbae Enterococcus columbae DSM7374 1121866 periphery Enterorhabdus mucosicola Enterorhabdus mucosicola DSM19490 1121870 periphery Epilithonimonas tenax Epilithonimonas tenax DSM16811 1121871 periphery Eremococcus coleocola DSM15696 Eremococcus coleocola DSM15696 1121874 periphery Erysipelothrix tonsillarum Erysipelothrix tonsillarum DSM14972 1121875 core Eudoraea adriatica Eudoraea adriatica DSM19308 1121877 periphery Ferrimicrobium acidiphilum Ferrimicrobium acidiphilum DSM19497 1121878 periphery Ferrimonas futtsuensis Ferrimonas futtsuensis DSM18154 1121887 periphery Flavobacterium daejeonense Flavobacterium daejeonense DSM17708 1121889 periphery Flavobacterium filum Flavobacterium filum DSM17961 1121890 periphery Flavobacterium frigidarium Flavobacterium frigidarium DSM17623 1121895 periphery Flavobacterium rivuli Flavobacterium rivuli WB 3.3-2 1121896 periphery Flavobacterium sasangense Flavobacterium sasangense DSM21067 1121897 periphery Flavobacterium soli Flavobacterium soli DSM19725 1121898 periphery Flavobacterium subsaxonicum Flavobacterium subsaxonicum WB 4.1-42 1121899 periphery Flavobacterium suncheonense Flavobacterium suncheonense GH29-5 1121904 periphery Flexithrix dorotheae Flexithrix dorotheae DSM6795 1121912 core Gelidibacter mesophilus Gelidibacter mesophilus DSM14095 1121914 periphery Gemella cuniculi Gemella cuniculi DSM15828 1121918 periphery Geopsychrobacter electrodiphilus Geopsychrobacter electrodiphilus DSM16401 1121920 core Geothrix fermentans Geothrix fermentans DSM14018 1121921 core Gilvimarinus chinensis Gilvimarinus chinensis DSM19667 1121923 periphery Glaciecola punicea Glaciecola punicea DSM14233 1121924 periphery Glaciibacter superstes Glaciibacter superstes DSM21135 1121926 periphery Glycomyces arizonensis Glycomyces arizonensis DSM44726 1121927 periphery Gordonia hirsuta Gordonia hirsuta DSM44140 1121928 periphery Gordonia shandongensis Gordonia shandongensis DSM45094 1121929 core Gracilibacillus lacisalsi Gracilibacillus lacisalsi DSM19029 1121930 periphery Gracilimonas tropica Gracilimonas tropica DSM19535 1121931 periphery Gramella echinicola Gramella echinicola DSM19838 1121933 periphery Granulicoccus phenolivorans Granulicoccus phenolivorans DSM17626 1121934 periphery Gulosibacter molinativorax Gulosibacter molinativorax DSM13485 1121935 periphery Hahella ganghwensis Hahella ganghwensis DSM17046 1121936 core Halalkalibacillus halophilus Halalkalibacillus halophilus DSM18494 1121937 core Haliea salexigens Haliea salexigens DSM19537 1121938 periphery Halobacillus kuroshimensis Halobacillus kuroshimensis DSM18393 1121939 periphery Halomonas anticariensis Halomonas anticariensis FP35 1121940 periphery Halomonas halocynthiae Halomonas halocynthiae DSM14573 1121943 periphery Halomonas lutea Halomonas lutea DSM23508 1121945 periphery Halorubrum ezzemoulense Halorubrum ezzemoulense DSM17463 1121946 periphery Hamadaea tsunoensis Hamadaea tsunoensis DSM44101 1121947 periphery Helcococcus sueciensis Helcococcus sueciensis DSM17243 1121948 periphery Hellea balneolensis Hellea balneolensis DSM19091 1121949 periphery Henriciella marina Henriciella marina DSM19595 1121952 periphery Humibacter albus Humibacter albus DSM18994 1121957 periphery Hymenobacter norwichensis Hymenobacter norwichensis DSM15439 1122128 periphery Jeotgalicoccus marinus Jeotgalicoccus marinus DSM19772 1122129 periphery Jeotgalicoccus psychrophilus Jeotgalicoccus psychrophilus DSM19085 1122130 periphery Jonesia quinghaiensis Jonesia quinghaiensis DSM15701 1122132 periphery Kaistia granuli Kaistia granuli DSM23481 1122134 periphery Kangiella aquimarina Kangiella aquimarina DSM16071 1122135 core Kiloniella laminariae Kiloniella laminariae DSM19542 1122137 core Kordiimonas gwangyangensis Kordiimonas gwangyangensis DSM19435 1122138 periphery Kribbella catacumbae Kribbella catacumbae DSM19601 1122139 periphery Kushneria aurantia Kushneria aurantia DSM21353 1122143 core Lacticigenium naphtae Lacticigenium naphtae DSM19658 1122146 periphery Lactobacillus ceti Lactobacillus ceti DSM22408 1122147 periphery Lactobacillus harbinensis Lactobacillus harbinensis DSM16991 1122149 periphery Lactobacillus malefermentans Lactobacillus malefermentans DSM5705 1122152 periphery Lactobacillus psittaci Lactobacillus psittaci DSM15354 1122164 periphery Legionella lansingensis Legionella lansingensis DSM19556 1122165 periphery Legionella moravica Legionella moravica DSM19234 1122169 periphery Legionella shakespearei Legionella shakespearei DSM23087 1122172 periphery Leptotrichia shahii Leptotrichia shahii DSM19757 1122173 periphery Leptotrichia trevisanii Leptotrichia trevisanii DSM22070 1122175 periphery Leucobacter chironomi Leucobacter chironomi DSM19883 1122176 core Lewinella cohaerens Lewinella cohaerens DSM23179 1122179 periphery Lewinella persica Lewinella persica DSM23188 1122180 periphery Loktanella hongkongensis Loktanella hongkongensis DSM17492 1122182 periphery Longispora albida Longispora albida DSM44784 1122185 periphery Lysobacter concretionis Lysobacter concretionis Ko07 1122194 core Marinimicrobium agarilyticum Marinimicrobium agarilyticum DSM16975 1122197 periphery Marinobacter daepoensis Marinobacter daepoensis DSM16072 1122201 periphery Marinobacterium litorale Marinobacterium litorale DSM23545 1122207 periphery Marinomonas ushuaiensis Marinomonas ushuaiensis DSM15871 1122211 periphery Marinospirillum insulare Marinospirillum insulare DSM21763 1122212 core Marinospirillum minutulum Marinospirillum minutulum DSM6287 1122214 periphery Martelella mediterranea Martelella mediterranea DSM17316 1122216 periphery Megamonas hypermegale Megamonas hypermegale DSM1672 1122217 core Megamonas rupellensis Megamonas rupellensis DSM19944 1122218 core Meganema perideroedes Meganema perideroedes DSM15528 1122221 periphery Meiothermus cerbereus Meiothermus cerbereus DSM11376 1122222 periphery Meiothermus taiwanensis Meiothermus taiwanensis DSM14542 1122223 periphery Meiothermus timidus Meiothermus timidus DSM17022 1122225 core Mesoflavibacter zeaxanth. DSM18436 Mesoflavibacter zeaxanthinifaciens DSM18436 1122226 core Mesonia mobilis Mesonia mobilis DSM19841 1122228 periphery Metascardovia criceti Metascardovia criceti DSM17774 1122236 periphery Methylophilus methylotrophus Methylophilus methylotrophus DSM46235 1122237 periphery Microbacterium gubbeenense Microbacterium gubbeenense DSM15944 1122238 periphery Microbacterium indicum Microbacterium indicum DSM19969 1122239 periphery Microbacterium luticocti Microbacterium luticocti DSM19459 1122243 periphery Moraxella boevrei Moraxella boevrei DSM14165 1122244 core Moraxella caprae Moraxella caprae DSM19149 1122247 periphery Mycobacterium hassiacum Mycobacterium hassiacum DSM44199 1122599 core Neptunomonas japonica Neptunomonas japonica DSM18939 1122602 periphery Nesterenkonia alba Nesterenkonia alba DSM19423 1122603 periphery Nevskia ramosa Nevskia ramosa DSM11499 1122604 core Nevskia soli Nevskia soli DSM19509 1122605 periphery Niabella aurantiaca Niabella aurantiaca DSM17617 1122609 periphery Nocardioides halotolerans Nocardioides halotolerans DSM19273 1122611 periphery Nonomuraea coxensis Nonomuraea coxensis DSM45129 1122612 periphery Novosphingobium acidiphilum Novosphingobium acidiphilum DSM19966 1122613 periphery Oceanicaulis alexandrii Oceanicaulis alexandrii DSM11625 1122614 periphery Oceanicola nanhaiensis Oceanicola nanhaiensis DSM18065 1122619 periphery Oligella ureolytica Oligella ureolytica DSM18253 1122621 core Olivibacter sitiensis Olivibacter sitiensis DSM17696 1122622 periphery Ornithinimicrobium pekingense Ornithinimicrobium pekingense DSM21552 1122915 periphery Paenibacillus alginolyticus Paenibacillus alginolyticus DSM5050 1122917 periphery Paenibacillus daejeonensis Paenibacillus daejeonensis DSM15491 1122918 periphery Paenibacillus fonticola Paenibacillus fonticola DSM21315 1122919 periphery Paenibacillus ginsengihumi Paenibacillus ginsengihumi DSM21568 1122921 periphery Paenibacillus massiliensis Paenibacillus massiliensis 2301065 1122925 periphery Paenibacillus sanguinis Paenibacillus sanguinis 2301083 1122927 periphery Paenibacillus terrigena Paenibacillus terrigena DSM21567 1122929 core Pannonibacter phragmitetus Pannonibacter phragmitetus DSM14782 1122931 core Parabacteroides gordonii Parabacteroides gordonii DSM23371 1122933 periphery Paraoerskovia marina Paraoerskovia marina DSM21750 1122939 periphery Patulibacter americanus Patulibacter americanus DSM16676 1122947 periphery Pelosinus fermentans Pelosinus fermentans DSM17108 1122951 core Perlucidibaca piscinae Perlucidibaca piscinae DSM21586 1122962 core Pleomorphomonas koreensis Pleomorphomonas koreensis DSM23070 1122963 periphery Pleomorphomonas oryzae Pleomorphomonas oryzae DSM16300 1122970 periphery Porphyrobacter cryptus Porphyrobacter cryptus DSM12079 1122971 periphery Porphyromonas bennonis Porphyromonas bennonis DSM23058 1122973 periphery Porphyromonas levii Porphyromonas levii DSM23370 1122975 periphery Porphyromonas somerae Porphyromonas somerae DSM23386 1122978 periphery Prevotella albensis Prevotella albensis DSM11370 1122981 periphery Prevotella corporis Prevotella corporis DSM18810 1122983 periphery Prevotella falsenii Prevotella falsenii DSM22864 1122985 periphery Prevotella loescheii Prevotella loescheii DSM19665 1122986 periphery Prevotella maculosa Prevotella maculosa DSM19339 1122989 periphery Prevotella oris DSM18711 Prevotella oris DSM18711 1122990 periphery Prevotella paludivivens Prevotella paludivivens DSM17968 1122991 periphery Prevotella shahii Prevotella shahii DSM15611 1122992 periphery Prevotella timonensis 4401737 Prevotella timonensis 4401737 1122993 periphery Prevotella veroralis DSM19559 Prevotella veroralis DSM19559 1122994 periphery Propionibacterium acidifaciens Propionibacterium acidifaciens DSM21887 1122997 periphery Propionibacterium jensenii Propionibacterium jensenii DSM20535 1122998 periphery Propionibacterium thoenii Propionibacterium thoenii DSM20276 1123008 core Proteiniphilum acetatigenes Proteiniphilum acetatigenes DSM18083 1123009 core Proteocatella sphenisci Proteocatella sphenisci DSM23131 1123013 periphery Pseudoclavibacter soli Pseudoclavibacter soli DSM23366 1123020 periphery Pseudomonas resinovorans DSM21078 Pseudomonas resinovorans DSM21078 1123023 periphery Pseudonocardia acaciae Pseudonocardia acaciae DSM45401 1123024 periphery Pseudonocardia asaccharolytica Pseudonocardia asaccharolytica DSM44247 1123033 periphery Psychrobacter lutiphocae Psychrobacter lutiphocae DSM21542 1123034 periphery Psychrobacter phenylpyruvicus Psychrobacter phenylpyruvicus DSM7000 1123035 periphery Psychroflexus tropicus Psychroflexus tropicus DSM15496 1123037 periphery Psychroserpens burtonensis Psychroserpens burtonensis DSM12212 1123052 periphery Rathayibacter toxicus Rathayibacter toxicus DSM7488 1123053 periphery Rheinheimera baltica Rheinheimera baltica DSM14885 1123054 periphery Rheinheimera perlucida Rheinheimera perlucida DSM18276 1123057 core Rhodonellum psychrophilum Rhodonellum psychrophilum GCM71 1123058 periphery Riemerella columbina Riemerella columbina DSM16469 1123059 periphery Robiginitomaculum antarcticum Robiginitomaculum antarcticum DSM21748 1123060 periphery Roseomonas aerilata Roseomonas aerilata DSM19363 1123065 core Ruania albidiflava Ruania albidiflava DSM18029 1123070 periphery Rubritalea marina Rubritalea marina DSM17716 1123072 periphery Rubritepida flocculans Rubritepida flocculans DSM14296 1123073 periphery Rudaea cellulosilytica Rudaea cellulosilytica DSM22992 1123075 periphery Ruminococcus gauvreauii Ruminococcus gauvreauii DSM19829 1123226 core Saccharibacillus kuerlensis Saccharibacillus kuerlensis DSM22868 1123227 periphery Saccharibacter floricola Saccharibacter floricola DSM15669 1123228 core Saccharospirillum impatiens Saccharospirillum impatiens DSM12546 1123229 periphery Salinarimonas rosea Salinarimonas rosea DSM21201 1123230 periphery Salinicoccus albus Salinicoccus albus DSM19776 1123234 core Salinimicrobium terrae Salinimicrobium terrae DSM17865 1123236 core Salinimonas chungwhensis Salinimonas chungwhensis DSM16280 1123237 core Salipiger mucosus Salipiger mucosus DSM16094 1123239 core Salsuginibacillus kocurii Salsuginibacillus kocurii DSM18087 1123240 periphery Sandarakinorhabdus limnophila Sandarakinorhabdus limnophila DSM17366 1123242 core Schlesneria paludicola Schlesneria paludicola DSM18645 1123247 core Sediminimonas qiaohouensis Sediminimonas qiaohouensis DSM21189 1123248 core Segetibacter koreensis Segetibacter koreensis DSM18137 1123250 periphery Selenomonas bovis Selenomonas bovis DSM23594 1123251 periphery Serinicoccus marinus Serinicoccus marinus DSM15273 1123252 periphery Shimazuella kribbensis Shimazuella kribbensis DSM45090 1123253 periphery Silanimonas lenta Silanimonas lenta DSM16282 1123255 core Simplicispira psychrophila Simplicispira psychrophila DSM11588 1123256 core Solimonas variicoloris Solimonas variicoloris DSM15731 1123257 periphery Solimonas flava Solimonas flava DSM18980 1123258 periphery Smaragdicoccus niigatensis Smaragdicoccus niigatensis DSM44881 1123261 periphery Solimonas soli Solimonas soli DSM21787 1123263 periphery Solobacterium moorei DSM22971 Solobacterium moorei DSM22971 1123267 periphery Sphingomonas astaxanthinifaciens Sphingomonas astaxanthinifaciens DSM22298 1123269 periphery Sphingomonas sanxanigenens Sphingomonas sanxanigenens DSM19645 1123270 periphery Sphingopyxis baekryungensis Sphingopyxis baekryungensis DSM16222 1123274 periphery Spirochaeta bajacaliforniensis Spirochaeta bajacaliforniensis DSM16054 1123276 periphery Spirosoma luteum Spirosoma luteum DSM19990 1123277 periphery Spirosoma panaciterrae Spirosoma panaciterrae DSM21099 1123278 core Spirosoma spitsbergense Spirosoma spitsbergense DSM19989 1123279 core Spongiibacter tropicus Spongiibacter tropicus DSM19543 1123284 periphery Sporolactobacillus vineae Sporolactobacillus vineae DSM21990 1123288 core Sporomusa ovata Sporomusa ovata DSM2662 1123290 periphery Sporosarcina ureae Sporosarcina ureae DSM2281 1123296 core Stenoxybacter acetivorans Stenoxybacter acetivorans DSM19021 1123298 periphery Streptococcus caballi Streptococcus caballi DSM19004 1123299 periphery Streptococcus castoreus Streptococcus castoreus DSM17536 1123300 periphery Streptococcus devriesei Streptococcus devriesei DSM19639 1123301 periphery Streptococcus didelphis Streptococcus didelphis DSM15616 1123302 periphery Streptococcus entericus Streptococcus entericus DSM14446 1123303 periphery Streptococcus ferus Streptococcus ferus DSM20646 1123304 periphery Streptococcus henryi Streptococcus henryi DSM19005 1123306 periphery Streptococcus marimammalium Streptococcus marimammalium DSM18627 1123307 periphery Streptococcus massiliensis Streptococcus massiliensis DSM18628 1123308 periphery Streptococcus merionis Streptococcus merionis DSM19192 1123309 periphery Streptococcus minor Streptococcus minor DSM17118 1123311 periphery Streptococcus orisratti Streptococcus orisratti DSM15617 1123312 periphery Streptococcus ovis Streptococcus ovis DSM16829 1123313 core Faecalicoccus pleomorphus Faecalicoccus pleomorphus DSM20574 1123314 periphery Streptococcus plurextorum Streptococcus plurextorum DSM22810 1123315 periphery Streptococcus porci Streptococcus porci DSM23759 1123318 periphery Streptococcus thoraltensis Streptococcus thoraltensis DSM12221 1123319 periphery Streptomyces flavidovirens Streptomyces flavidovirens DSM40150 1123320 periphery Streptomyces scabrisporus Streptomyces scabrisporus DSM41855 1123321 periphery Streptomyces sulphureus Streptomyces sulphureus DSM40104 1123322 periphery Streptomyces vitaminophilus Streptomyces vitaminophilus DSM41686 1123325 periphery Sulfurihydrogenibium subterraneum Sulfurihydrogenibium subterraneum DSM15120 1123326 periphery Sulfurospirillum arcachonense Sulfurospirillum arcachonense DSM9755 1123354 core Tepidiphilus margaritifer Tepidiphilus margaritifer DSM15129 1123355 core Terasakiella pusilla Terasakiella pusilla DSM6293 1123359 periphery Tetragenococcus muriaticus Tetragenococcus muriaticus DSM15685 1123360 periphery Thalassobacter arenae Thalassobacter arenae DSM19593 1123366 periphery Thalassospira xiamenensis Thalassospira xiamenensis M-5 1123367 periphery Thauera linaloolentis Thauera linaloolentis 47Lol 1123368 periphery Thermithiobacillus tepidarius Thermithiobacillus tepidarius DSM3134 1123371 periphery Thermodesulfatator atlanticus Thermodesulfatator atlanticus DSM21156 1123372 periphery Thermodesulfobacterium hveragerdense Thermodesulfobacterium hveragerdense DSM12571 1123373 periphery Thermodesulfobacterium thermophilum Thermodesulfobacterium thermophilum DSM1276 1123376 periphery Thermodesulfovibrio thiophilus Thermodesulfovibrio thiophilus DSM17215 1123377 periphery Thermomonas fusca Thermomonas fusca DSM15424 1123386 periphery Thermus antranikianii Thermus antranikianii DSM12462 1123388 periphery Thermus igniterrae Thermus igniterrae ATCC700962 1123389 periphery Thermus islandicus Thermus islandicus DSM21543 1123392 periphery Thiobacillus denitrificans DSM12475 Thiobacillus denitrificans DSM12475 1123393 periphery Thiobacillus thioparus Thiobacillus thioparus DSM505 1123399 periphery Thiothrix disciformis Thiothrix disciformis DSM14473 1123400 periphery Thiothrix flexilis Thiothrix flexilis DSM14609 1123401 periphery Thiothrix lacustris Thiothrix lacustris DSM21227 1123405 core Tuberibacillus calidus Tuberibacillus calidus DSM17572 1123487 core Uliginosibacterium gangwonense Uliginosibacterium gangwonense DSM18521 1123488 periphery Varibaculum cambriense DSM15806 Varibaculum cambriense DSM15806 1123489 periphery Veillonella magna Veillonella magna DSM19857 1123499 core Vitreoscilla stercoraria Vitreoscilla stercoraria DSM513 1123500 periphery Weissella halotolerans Weissella halotolerans DSM20190 1123501 core Wenxinia marina Wenxinia marina DSM24838 1123502 periphery Wohlfahrtiimonas chitiniclastica Wohlfahrtiimonas chitiniclastica DSM18708 1123503 core Woodsholea maritima Woodsholea maritima DSM17123 1123504 core Xenophilus azovorans Xenophilus azovorans DSM13620 1123507 periphery Yaniella halotolerans Yaniella halotolerans DSM15476 1123508 core Zavarzinella formosa Zavarzinella formosa DSM19928 1123511 core Zymophilus raffinosivorans Zymophilus raffinosivorans DSM20765 1123514 periphery Thiomicrospira arctica Thiomicrospira arctica DSM13458 1123517 periphery Thiomicrospira pelophila Thiomicrospira pelophila DSM1534 1123518 periphery Thiomicrospira sp. Kp2 Thiomicrospira sp. Kp2 1123519 periphery Pseudomonas stutzeri DSM10701 Pseudomonas stutzeri DSM10701 1124780 core Nafulsella turpanensis Nafulsella turpanensis ZLM-10 1124982 core Treponema sp. JC4 Treponema sp. JC4 1124983 periphery Pseudomonas protegens CHA0 Pseudomonas protegens CHA0 1124991 core Morganella morganii Morganella morganii subsp. morganii KT 1125699 periphery Treponema maltophilum Treponema maltophilum ATCC51939 1125700 periphery Treponema medium Treponema medium ATCC700293 1125701 periphery Treponema socranskii paredis Treponema socranskii subsp. paredis ATCC35535 1125712 periphery Olsenella profusa Olsenella profusa F0195 1125718 periphery Actinomyces massiliensis Actinomyces massiliensis F0489 1125725 periphery Treponema socranskii VPIDR56BR1116 Treponema socranskii subsp. socranskii VPI DR56BR1116 1125779 periphery Corynebacterium pyruviciproducens Corynebacterium pyruviciproducens ATCC BAA-1742 1125863 core Deferrisoma camini Deferrisoma camini S3R1 1125971 periphery Amycolatopsis orientalis Amycolatopsis orientalis DSM40040 1125973 periphery Bosea sp. 117 Bosea sp. 117 1126627 periphery Bradyrhizobium sp. DOA9 Bradyrhizobium sp. DOA9 1127131 periphery Weissella confusa Weissella confusa LBAE C39-2 1127134 core Nocardia cyriacigeorgica Nocardia cyriacigeorgica GUH-2 1127673 periphery Glaciecola lipolytica Glaciecola lipolytica E3 1127692 periphery Capnocytophaga sp. F0381 Capnocytophaga sp. oral taxon 332 str. F0381 1127695 periphery Selenomonas sp. F0429 Selenomonas sp. oral taxon 138 str. F0429 1127696 periphery Porphyromonas catoniae Porphyromonas catoniae F0037 1128111 periphery Veillonella atypica KON Veillonella atypica KON 1128398 periphery Clostridium acidurici [Clostridium] acidurici 9a 1128421 periphery Bacterium sp. JKG1 Bacterium sp. JKG1 1128427 periphery filamentous cyanobacterium filamentous cyanobacterium ESFC-1 1128912 core Glaciecola mesophila Glaciecola mesophila KMM 241 1129368 periphery Spiroplasma melliferum Spiroplasma melliferum IPMB4A 1129369 core Mycoplasma hyorhinis GDL1 Mycoplasma hyorhinis GDL-1 1129374 periphery Alishewanella jeotgali Alishewanella jeotgali KCTC 22429 1129794 periphery Glaciecola psychrophila Glaciecola psychrophila 170 1131266 core Thaumarchaeota sp. SCGC AB629I23 Marine Group I thaumarchaeote SCGC AB-629-I23 1131269 core Nitrospina sp. AB629B18 Nitrospina sp. AB-629-B18 1131451 periphery Xanthomonas fragariae Xanthomonas fragariae LMG 25863 1131462 core Dehalobacter sp. CF Dehalobacter sp. CF 1131553 periphery Nitrosomonas cryotolerans Nitrosomonas cryotolerans ATCC49181 1131730 periphery Bacillus vireti Bacillus vireti LMG 21834 1131812 periphery Flavobacterium sp. 83 Flavobacterium sp. 83 1131813 periphery Methylobacterium sp. 88A Methylobacterium sp. 88A 1131814 periphery Xanthobacter sp. 126 Xanthobacter sp. 126 1132441 periphery Arthrobacter sp. 35W Arthrobacter sp. 35W 1132442 periphery Bacillus sp. 37MA Bacillus sp. 37MA 1132509 periphery Halococcus hamelinensis Halococcus hamelinensis 100A6 1132836 periphery Rhizobium sp. CCGE510 Rhizobium sp. CCGE 510 1132855 periphery Methylotenera mobilis 13 Methylotenera mobilis 13 1133569 periphery Lactobacillus vini Lactobacillus vini DSM20605 1133849 periphery Nocardia brasiliensis Nocardia brasiliensis ATCC700358 1133850 periphery Streptomyces hygroscopicus Streptomyces hygroscopicus subsp. jinggangensis 5008 1134413 periphery Bacillus sp. L1 Bacillus sp. L1(2012) 1134445 periphery Streptomyces somaliensis Streptomyces somaliensis DSM40738 1134474 periphery Cellvibrio sp. BR Cellvibrio sp. BR 1134510 periphery Bartonella koehlerae Bartonella koehlerae C-29 1134912 periphery Methylocystis parvus Methylocystis parvus OBBP 1136138 periphery Pseudomonas fragi Pseudomonas fragi B25 1136163 periphery Vibrio cyclitrophicus Vibrio cyclitrophicus FF75 1136177 periphery Lactobacillus pentosus Lactobacillus pentosus KCA1 1136417 periphery Salinispora pacifica Salinispora pacifica CNT003 1137268 periphery Nocardiopsis sp. CNT312 Nocardiopsis sp. CNT312 1137269 periphery Streptomyces sp. CNH099 Streptomyces sp. CNH099 1137271 periphery Saccharomonospora sp. CNQ490 Saccharomonospora sp. CNQ490 1137281 core Formosa sp. AK20 Formosa sp. AK20 1137799 core Endozoicomonas numazuensis Endozoicomonas numazuensis 1138822 periphery Lactobacillus curieae Lactobacillus curieae 1139219 periphery Enterococcus dispar Enterococcus dispar ATCC51266 1139996 periphery Enterococcus saccharolyticus Enterococcus saccharolyticus ATCC43076 1140001 periphery Enterococcus durans Enterococcus durans ATCC6056 1140002 periphery Enterococcus avium Enterococcus avium ATCC14025 1140003 periphery Enterococcus sulfureus Enterococcus sulfureus ATCC49903 1141106 periphery Staphylococcus intermedius Staphylococcus intermedius NCTC 11048 1141662 periphery Providencia burhodogranariea Providencia burhodogranariea DSM19968 1141663 periphery Providencia rettgeri Dmel1 Providencia rettgeri Dmel1 1142394 core Phycisphaera mikurensis Phycisphaera mikurensis NBRC 102666 1142511 periphery Wigglesworthia glossinidia sp. Gmo Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) 1143323 periphery Chlamydia gallinacea Chlamydia gallinacea 08-1274/3 1144275 periphery Corallococcus coralloides Corallococcus coralloides DSM2259 1144305 periphery Novosphingobium sp. AP12 Novosphingobium sp. AP12 1144307 periphery Sphingobium sp. AP49 Sphingobium sp. AP49 1144310 periphery Rhizobium sp. CF080 Rhizobium sp. CF080 1144312 periphery Rhizobium sp. CF122 Rhizobium sp. CF122 1144313 periphery Flavobacterium sp. CF136 Flavobacterium sp. CF136 1144319 periphery Herbaspirillum sp. CF444 Herbaspirillum sp. CF444 1144325 periphery Pseudomonas sp. GM21 Pseudomonas sp. GM21 1144342 periphery Herbaspirillum sp. YR522 Herbaspirillum sp. YR522 1144343 periphery Phyllobacterium sp. YR531 Phyllobacterium sp. YR531 1144664 periphery Acinetobacter sp. CIP102129 Acinetobacter sp. CIP 102129 1144672 core Acinetobacter sp. CIP56.2 Acinetobacter sp. CIP 56.2 1144888 periphery Rickettsia helvetica Rickettsia helvetica C9P9 1144932 periphery Pelagibacter ubique HIMB058 Candidatus Pelagibacter ubique HIMB058 1145276 core Lysinibacillus varians Lysinibacillus varians 1146883 periphery Blastococcus saxobsidens Blastococcus saxobsidens DD2 1147128 periphery Bifidobacterium asteroides Bifidobacterium asteroides PRL2011 1149133 periphery Pseudomonas pseudoalcaligenes KF707 Pseudomonas pseudoalcaligenes KF707 1150398 periphery Arthrobacter sp. 9MFCol31 Arthrobacter sp. 9MFCol3.1 1150399 periphery Leifsonia sp. 109 Leifsonia sp. 109 1150469 periphery Rhodospirillum photometricum Rhodospirillum photometricum DSM122 1150474 core Mesoaciditoga lauensis Mesoaciditoga lauensis cd-1655R 1150599 periphery Mycobacterium phlei Mycobacterium phlei RIVM601174 1150600 core Arcticibacter svalbardensis Arcticibacter svalbardensis MN12-7 1150621 periphery Sulfurospirillum multivorans Sulfurospirillum multivorans DSM12446 1150626 periphery Phaeospirillum molischianum Phaeospirillum molischianum DSM120 1150864 periphery Micromonospora lupini Micromonospora lupini str. Lupac 08 1151061 periphery Tsukamurella sp. 1534 Tsukamurella sp. 1534 1151116 periphery Rahnella aquatilis HX2 Rahnella aquatilis HX2 1151117 periphery Thermococcus zilligii Thermococcus zilligii AN1 1151118 periphery Arthrobacter sp. 161MFSha21 Arthrobacter sp. 161MFSha2.1 1151119 periphery Arthrobacter sp. 162MFSha11 Arthrobacter sp. 162MFSha1.1 1151122 periphery Microbacterium sp. 292MF Microbacterium sp. 292MF 1151126 periphery Microbacterium paraoxydans 77MFTsu32 Microbacterium paraoxydans 77MFTsu3.2 1151127 periphery Pseudomonas mandelii 36MFCvi11 Pseudomonas mandelii 36MFCvi1.1 1151292 periphery Peptoclostridium difficile CD160 Peptoclostridium difficile CD160 1154757 periphery Leuconostoc pseudomesenteroides Leuconostoc pseudomesenteroides 4882 1154860 periphery Streptococcus agalactiae LMG14747 Streptococcus agalactiae LMG 14747 1155714 periphery Streptomyces sp. LaPpAH108 Streptomyces sp. LaPpAH-108 1155718 periphery Streptomyces sp. MspMPM5 Streptomyces sp. MspMP-M5 1156844 periphery Streptomyces sp. HmicA12 Streptomyces sp. HmicA12 1156919 periphery Achromobacter piechaudii HLE Achromobacter piechaudii HLE 1156935 periphery Agrobacterium albertimagni Agrobacterium albertimagni AOL15 1156937 periphery Methylacidiphilum fumariolicum Methylacidiphilum fumariolicum SolV 1157490 core Tumebacillus flagellatus Tumebacillus flagellatus 1157632 periphery Streptomyces sp. LaPpAH95 Streptomyces sp. LaPpAH-95 1157634 periphery Streptomyces sp. Amel2xE9 Streptomyces sp. Amel2xE9 1157635 periphery Streptomyces sp. ATexABD23 Streptomyces sp. ATexAB-D23 1157637 periphery Streptomyces sp. BoleA5 Streptomyces sp. BoleA5 1157638 periphery Streptomyces sp. PsTaAH124 Streptomyces sp. PsTaAH-124 1157640 periphery Streptomyces sp. FxanaC1 Streptomyces sp. FxanaC1 1157708 periphery Variovorax paradoxus 110B Variovorax paradoxus 110B 1157943 periphery Mycobacterium sp. 155 Mycobacterium sp. 155 1158050 periphery Arthrobacter sp. 135MFCol51 Arthrobacter sp. 135MFCol5.1 1158146 periphery Thioalkalivibrio sp. ALJT Thioalkalivibrio sp. ALJT 1158150 periphery Thioalkalivibrio sp. ALD1 Thioalkalivibrio sp. ALD1 1158165 periphery Thioalkalivibrio sp. ALMg11 Thioalkalivibrio sp. ALMg11 1158182 periphery Thioalkalivibrio sp. ALE31 Thioalkalivibrio sp. ALE31 1158292 periphery Thiomonas sp. FBCd Thiomonas sp. FB-Cd 1158294 periphery Prevotella sp. 10 Prevotella sp. 10(H) 1158318 periphery Desulfurobacterium sp. TC51 Desulfurobacterium sp. TC5-1 1158338 periphery Persephonella sp. IF05L8 Persephonella sp. IF05-L8 1158345 periphery Persephonella sp. KM09Lau8 Persephonella sp. KM09-Lau-8 1158601 periphery Enterococcus malodoratus Enterococcus malodoratus ATCC43197 1158602 periphery Enterococcus raffinosus Enterococcus raffinosus ATCC49464 1158604 periphery Enterococcus villorum Enterococcus villorum ATCC700913 1158606 periphery Enterococcus asini Enterococcus asini ATCC700915 1158607 periphery Enterococcus pallens Enterococcus pallens ATCC BAA-351 1158608 periphery Enterococcus haemoperoxidus Enterococcus haemoperoxidus ATCC BAA-382 1158609 periphery Enterococcus moraviensis Enterococcus moraviensis ATCC BAA-383 1158610 periphery Enterococcus phoeniculicola Enterococcus phoeniculicola ATCC BAA-412 1158612 periphery Enterococcus caccae Enterococcus caccae ATCC BAA-1240 1158614 periphery Enterococcus gilvus Enterococcus gilvus ATCC BAA-350 1158756 periphery Thioalkalivibrio sp. ALJ7 Thioalkalivibrio sp. ALJ7 1158760 periphery Thioalkalivibrio sp. ALJ11 Thioalkalivibrio sp. ALJ11 1158762 periphery Thioalkalivibrio sp. ALJ16 Thioalkalivibrio sp. ALJ16 1159488 periphery Staphylococcus equorum Staphylococcus equorum subsp. equorum Mu2 1159870 periphery Bordetella sp. FB8 Bordetella sp. FB-8 1160137 periphery Nocardia sp. BMG111209 Nocardia sp. BMG111209 1160707 core Ureibacillus thermosphaericus Ureibacillus thermosphaericus str. Thermo-BF 1160718 periphery Streptomyces auratus Streptomyces auratus AGR0001 1160721 periphery Ruminococcus bicirculans Ruminococcus bicirculans 1161401 periphery Maricaulis sp. JL2009 Maricaulis sp. JL2009 1161413 periphery Streptococcus sp. ACC21 Streptococcus sp. ACC21 1161902 periphery Eubacterium nodatum Eubacterium nodatum ATCC33099 1162668 core Leptospirillum ferrooxidans Leptospirillum ferrooxidans C2-3 1163385 periphery Phytoplasma peanut witchesbroom Peanut witches'-broom phytoplasma NTU2011 1163389 periphery Francisella noatunensis Francisella noatunensis subsp. orientalis str. Toba 04 1163398 periphery Pseudomonas sp. HYS Pseudomonas sp. HYS 1163407 periphery Rhodanobacter spathiphylli Rhodanobacter spathiphylli B39 1163408 periphery Rhodanobacter fulvus Rhodanobacter fulvus Jip2 1163409 periphery Rhodanobacter thiooxydans Rhodanobacter thiooxydans LCS2 1163617 core Sulfuricella denitrificans Sulfuricella denitrificans skB26 1163671 periphery Clostridium sp. 12 Clostridium sp. 12(A) 1163730 core Fervidicoccus fontis Fervidicoccus fontis Kam940 1163745 periphery Helicobacter cetorum MIT995656 Helicobacter cetorum MIT 99-5656 1165094 periphery Richelia intracellularis Richelia intracellularis HH01 1165096 periphery Methylotenera sp. 73s Methylotenera sp. 73s 1165841 periphery Sulfurovum sp. AR Sulfurovum sp. AR 1166016 periphery Pectobacterium sp. SCC3193 Pectobacterium sp. SCC3193 1166018 core Fibrella aestuarina Fibrella aestuarina BUZ 2 1166130 periphery Enterobacter sp. R4368 Enterobacter sp. R4-368 1166948 periphery Halomonas xinjiangensis Halomonas xinjiangensis 1167006 periphery Desulfocapsa sulfexigens Desulfocapsa sulfexigens DSM10523 1167632 periphery Staphylococcus vitulinus Staphylococcus vitulinus F1028 1168034 periphery Draconibacterium orientale Draconibacterium orientale 1168059 periphery Xanthobacteraceae bacterium 501b Xanthobacteraceae bacterium 501b 1168065 core Gammaproteobacteria bacterium BDW918 gamma proteobacterium BDW918 1168067 periphery Thiomicrospira kuenenii Thiomicrospira kuenenii DSM12350 1168289 periphery Marinilabilia salmonicolor Marinilabilia salmonicolor JCM 21150 1169143 periphery Burkholderia bryophila Burkholderia bryophila 376MFSha3.1 1169144 periphery Bacillus sp. 123MFChir2 Bacillus sp. 123MFChir2 1169152 periphery Nocardia sp. CNY236 Nocardia sp. CNY236 1169154 periphery Streptomyces sp. CNT372 Streptomyces sp. CNT372 1169161 periphery Streptomyces sp. CNY243 Streptomyces sp. CNY243 1170318 periphery Propionibacterium avidum Propionibacterium avidum 44067 1170562 periphery Calothrix sp. PCC6303 Calothrix sp. PCC6303 1171373 periphery Propionibacterium acidipropionici Propionibacterium acidipropionici ATCC4875 1172179 periphery Streptomyces sp. 142MFCol31 Streptomyces sp. 142MFCol3.1 1172180 periphery Streptomyces sp. 351MFTsu51 Streptomyces sp. 351MFTsu5.1 1172181 periphery Streptomyces sp. 303MFCol52 Streptomyces sp. 303MFCol5.2 1172185 periphery Nocardia sp. 348MFTsu51 Nocardia sp. 348MFTsu5.1 1172186 periphery Mycobacterium sp. 360MFTsu51 Mycobacterium sp. 360MFTsu5.1 1172188 core Terracoccus sp. 273MFTsu31 Terracoccus sp. 273MFTsu3.1 1172190 periphery Sulfurimonas sp. AST10 Sulfurimonas sp. AST-10 1172562 periphery Helicobacter cinaedi PAGU611 Helicobacter cinaedi PAGU611 1173020 core Chamaesiphon minutus Chamaesiphon minutus PCC6605 1173021 core Cyanobacterium sp. PCC7702 Cyanobacterium sp. PCC7702 1173022 core Crinalium epipsammum Crinalium epipsammum PCC9333 1173023 core Fischerella sp. PCC9431 Fischerella sp. PCC9431 1173024 periphery Fischerella sp. PCC9605 Fischerella sp. PCC9605 1173025 core Geitlerinema sp. PCC7407 Geitlerinema sp. PCC7407 1173026 core Gloeocapsa sp. PCC7428 Gloeocapsa sp. PCC7428 1173027 periphery Microcoleus sp. PCC7113 Microcoleus sp. PCC7113 1173028 periphery Oscillatoria sp. PCC10802 Oscillatoria sp. PCC10802 1173029 core Spirulina subsalsa Spirulina subsalsa PCC9445 1173263 periphery Synechococcus sp. PCC7502 Synechococcus sp. PCC7502 1173264 periphery Leptolyngbya sp. PCC6406 Leptolyngbya sp. PCC6406 1173701 periphery Colletotrichum sublineola Colletotrichum sublineola 1174504 periphery Bacillus psychrosaccharolyticus Bacillus psychrosaccharolyticus ATCC23296 1174528 periphery Fischerella sp. PCC9339 Fischerella sp. PCC9339 1174529 periphery Liberibacter asiaticus gxpsy Candidatus Liberibacter asiaticus str. gxpsy 1174684 periphery Sphingopyxis sp. MC1 Sphingopyxis sp. MC1 1175306 periphery Herbaspirillum sp. GW103 Herbaspirillum sp. GW103 1175629 periphery Aerococcus viridans LL1 Aerococcus viridans LL1 1176165 periphery Brevibacterium massiliense Brevibacterium massiliense 5401308 1177154 periphery Alcanivorax sp. 19m6 Alcanivorax sp. 19-m-6 1177179 periphery Alcanivorax hongdengensis Alcanivorax hongdengensis A-11-3 1177181 periphery Alcanivorax jadensis Alcanivorax jadensis T9 1177594 periphery Microbacterium sp. C448 Microbacterium sp. C448 1177928 periphery Thalassospira profundimaris Thalassospira profundimaris WP0211 1178482 periphery Halomonas sp. BJGMMB45 Halomonas sp. BJGMM-B45 1178537 periphery Bacillus xiamenensis Bacillus xiamenensis 1178540 periphery Bacillus sp. DW54 Bacillus sp. DW5-4 1178825 core Arenitalea lutea Arenitalea lutea 1179155 periphery Photodesmus blepharus Candidatus Photodesmus blepharus 1179226 periphery Staphylococcus lentus Staphylococcus lentus F1142 1179773 periphery Saccharothrix espanaensis Saccharothrix espanaensis DSM44229 1179777 periphery Mycoplasma sp. G5847 Mycoplasma sp. G5847 1179778 periphery Pseudomonas sp. M47T1 Pseudomonas sp. M47T1 1182553 periphery Cladophialophora psammophila Cladophialophora psammophila 1182590 periphery Pseudomonas pseudoalcaligenes CECT5344 Pseudomonas pseudoalcaligenes CECT 5344 1183377 periphery Pyrococcus sp. ST04 Pyrococcus sp. ST04 1183438 periphery Gloeobacter kilaueensis Gloeobacter kilaueensis JS1 1184251 core Thermogladius cellulolyticus Thermogladius cellulolyticus 1633 1184267 periphery Bdellovibrio exovorus Bdellovibrio exovorus JSS 1184607 core Austwickia chelonae Austwickia chelonae NBRC 105200 1184609 periphery Kineosphaera limosa Kineosphaera limosa NBRC 100340 1185652 periphery Sinorhizobium fredii USDA257 Sinorhizobium fredii USDA 257 1185653 periphery Planococcus antarcticus Planococcus antarcticus DSM14505 1185766 periphery Thioclava dalianensis Thioclava dalianensis 1185876 core Fibrisoma limi Fibrisoma limi BUZ 3 1186051 core Blattabacterium sp. Bgi Blattabacterium sp. (Blaberus giganteus) 1187848 periphery Vibrio genomosp. Vibrio genomosp. F10 str. ZF-129 1187851 periphery Rhodovulum sp. PH10 Rhodovulum sp. PH10 1188233 periphery Mycoplasma auris Mycoplasma auris 15026 1188234 periphery Mycoplasma alkalescens Mycoplasma alkalescens 14918 1188235 periphery Mycoplasma bovigenitalium Mycoplasma bovigenitalium 51080 1188236 periphery Mycoplasma arginini Mycoplasma arginini 7264 1188239 periphery Mycoplasma ovipneumoniae Mycoplasma ovipneumoniae 14811 1188240 periphery Mycoplasma yeatsii Mycoplasma yeatsii 13926 1188241 periphery Ureaplasma diversum Ureaplasma diversum NCTC 246 1188252 periphery Vibrio rumoiensis Vibrio rumoiensis 1S-45 1188256 periphery Rhodovulum sulfidophilum Rhodovulum sulfidophilum DSM1374 1189612 core Indibacter alkaliphilus Indibacter alkaliphilus LW1 1189619 periphery Psychroflexus gondwanensis Psychroflexus gondwanensis ACAM 44 1189620 periphery Flavobacterium sp. ACAM123 Flavobacterium sp. ACAM 123 1190603 periphery Enterovibrio norvegicus Enterovibrio norvegicus FF-33 1190606 periphery Enterovibrio calviensis Enterovibrio calviensis 1F-211 1191299 periphery Vibrio kanaloae Vibrio kanaloae 5S-149 1191460 periphery Acinetobacter venetianus Acinetobacter venetianus RAG-1 1191523 periphery Melioribacter roseus Melioribacter roseus P3M-2 1192034 periphery Chondromyces apiculatus Chondromyces apiculatus DSM436 1192124 periphery Burkholderia sp. lig30 Burkholderia sp. lig30 1192759 periphery Sphingobium xenophagum Sphingobium xenophagum QYY 1192868 periphery Pseudaminobacter salicylatoxidans Pseudaminobacter salicylatoxidans KCT001 1193128 core Parascardovia denticolens IPLA20019 Parascardovia denticolens IPLA20019 1193181 periphery Tetrasphaera elongata Tetrasphaera elongata Lp2 1193729 core Endolissoclinum faulkneri L2 Candidatus Endolissoclinum faulkneri L2 1194165 periphery Microbacterium yannicii Microbacterium yannicii PS01 1194526 core Staphylococcus warneri SG1 Staphylococcus warneri SG1 1194972 periphery Mycobacterium vaccae Mycobacterium vaccae ATCC25954 1195236 periphery Clostridium termitidis [Clostridium] termitidis CT1112 1195246 core Alishewanella agri Alishewanella agri BL06 1196028 core Virgibacillus halodenitrificans Virgibacillus halodenitrificans 1806 1196029 periphery Bacillus endophyticus Bacillus endophyticus 2102 1196031 periphery Bacillus oceanisediminis Bacillus oceanisediminis 2691 1196083 core Snodgrassella alvi Snodgrassella alvi 1196095 core Gilliamella apicola Gilliamella apicola 1196322 core Clostridium sp. Maddingley Clostridium sp. Maddingley MBC34-26 1196323 periphery Paenibacillus sp. OSYSE Paenibacillus sp. OSY-SE 1196324 periphery Bacillus macauensis Bacillus macauensis ZFHKF-1 1196835 periphery Pseudomonas stutzeri CCUG 29243 Pseudomonas stutzeri CCUG29243 1197130 periphery Halococcus sp. 197A Halococcus sp. 197A 1197477 core Mangrovimonas yunxiaonensis Mangrovimonas yunxiaonensis 1197706 periphery Arthrobacter sp. M2012083 Arthrobacter sp. M2012083 1197719 periphery Salmonella bongori N26808 Salmonella bongori N268-08 1197906 periphery Afipia birgiae Afipia birgiae 34632 1198114 core Granulicella tundricola Granulicella tundricola MP5ACTX9 1198232 core Cycloclasticus zancles Cycloclasticus zancles 7-ME 1198449 periphery Aeropyrum camini Aeropyrum camini SY1 1198452 periphery Janthinobacterium sp. HH01 Janthinobacterium sp. HH01 1198676 periphery Streptococcus mutans GS5 Streptococcus mutans GS-5 1200352 periphery Corynebacterium terpenotabidum Corynebacterium terpenotabidum Y-11 1200557 periphery Anaerovibrio sp. RM50 Anaerovibrio sp. RM50 1200567 core Ruminobacter sp. RM87 Ruminobacter sp. RM87 1200792 periphery Brevibacillus brevis X23 Brevibacillus brevis X23 1201035 periphery Bartonella birtlesii Bartonella birtlesii E11 1201288 periphery Bacteriovorax sp. Seq25V Bacteriovorax sp. Seq25_V 1201290 core Bacteriovorax sp. BAL6X Bacteriovorax sp. BAL6_X 1201292 core Enterococcus faecalis ATCC29212 Enterococcus faecalis ATCC29212 1201293 periphery Moritella dasanensis Moritella dasanensis ArB 0140 1202532 periphery Flavobacterium sp. F52 Flavobacterium sp. F52 1202768 periphery Halopiger salifodinae Halopiger salifodinae 1202962 core Moritella marina Moritella marina ATCC15381 1203076 periphery Lactobacillus ingluviei Lactobacillus ingluviei str. Autruche 4 1203190 periphery Corynebacterium timonense Corynebacterium timonense 5401744 1203550 periphery Prevotella oralis HGA0225 Prevotella oralis HGA0225 1203554 periphery Sutterella wadsworthensis HGA0223 Sutterella wadsworthensis HGA0223 1203556 periphery Actinomyces sp. HPA0247 Actinomyces sp. HPA0247 1203566 periphery Corynebacterium sp. KPL1859 Corynebacterium sp. KPL1859 1203567 periphery Corynebacterium sp. KPL1860 Corynebacterium sp. KPL1860 1203568 periphery Dermabacter sp. HFH0086 Dermabacter sp. HFH0086 1203590 periphery Streptococcus sp. HPH0090 Streptococcus sp. HPH0090 1203602 periphery Atopobium sp. F0494 Atopobium sp. oral taxon 199 str. F0494 1203605 periphery Propionibacterium sp. F0372 Propionibacterium sp. oral taxon 192 str. F0372 1203606 core Butyricicoccus pullicaecorum Butyricicoccus pullicaecorum 1.2 1203611 periphery Alistipes onderdonkii Alistipes onderdonkii WAL8169 1203622 periphery Corynebacterium sp. KPL1989 Corynebacterium sp. KPL1989 1203632 periphery Corynebacterium sp. KPL2004 Corynebacterium sp. KPL2004 1205680 periphery Reyranella massiliensis Reyranella massiliensis 521 1205681 periphery Bartonella rattaustraliani Bartonella rattaustraliani AUST/NH4 1205683 periphery Yersinia massiliensis Yersinia massiliensis CCUG 53443 1205753 periphery Xanthomonas translucens Xanthomonas translucens DAR61454 1205908 periphery Vibrio breoganii Vibrio breoganii 1C10 1205910 periphery Nocardiopsis alba Nocardiopsis alba ATCC BAA-2165 1206101 periphery Streptomyces sp. CNR698 Streptomyces sp. CNR698 1206720 periphery Nocardia aobensis Nocardia aobensis NBRC 100429 1206725 periphery Nocardia brevicatena Nocardia brevicatena NBRC 12119 1206726 periphery Nocardia carnea Nocardia carnea NBRC 14403 1206729 periphery Nocardia exalbida Nocardia exalbida NBRC 100660 1206730 periphery Nocardia higoensis Nocardia higoensis NBRC 100133 1206731 periphery Nocardia jiangxiensis Nocardia jiangxiensis NBRC 101359 1206732 periphery Nocardia otitidiscaviarum Nocardia otitidiscaviarum NBRC 14405 1206733 periphery Nocardia niigatensis Nocardia niigatensis NBRC 100131 1206735 periphery Nocardia takedensis Nocardia takedensis NBRC 100417 1206737 periphery Nocardia pneumoniae Nocardia pneumoniae NBRC 100136 1206739 periphery Nocardia testacea Nocardia testacea NBRC 100365 1206741 periphery Nocardia concava Nocardia concava NBRC 100430 1206743 periphery Nocardia veterana Nocardia veterana NBRC 100344 1206744 periphery Nocardia transvalensis Nocardia transvalensis NBRC 15921 1206777 core Pseudomonas sp. Lz4W Pseudomonas sp. Lz4W 1207055 periphery Sphingobium sp. C100 Sphingobium sp. C100 1207058 periphery Hyphomonas sp. L53140 Hyphomonas sp. L-53-1-40 1207063 core Oceanibaculum indicum Oceanibaculum indicum P24 1207075 periphery Pseudomonas sp. UW4 Pseudomonas sp. UW4 1207076 periphery Pseudomonas luteola Pseudomonas luteola XLDN4-9 1208321 core Marinomonas sp. D104 Marinomonas sp. D104 1208323 core Celeribacter baekdonensis Celeribacter baekdonensis B30 1208583 periphery Commensalibacter sp. MX01 Commensalibacter sp. MX01 1208918 core Kinetoplastibacterium crithidii Candidatus Kinetoplastibacterium crithidii TCC036E 1208919 core Kinetoplastibacterium desouzaii Candidatus Kinetoplastibacterium desouzaii TCC079E 1208920 periphery Kinetoplastibacterium oncopeltii Candidatus Kinetoplastibacterium oncopeltii TCC290E 1208921 periphery Kinetoplastibacterium galatii Candidatus Kinetoplastibacterium galatii TCC219 1208923 periphery Kinetoplastibacterium blastocrithidii Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas culicis) 1209072 periphery Cellvibrio mixtus Cellvibrio mixtus subsp. mixtus J3-8 1209984 periphery Mycobacterium mageritense Mycobacterium mageritense DSM44476 1209989 core Tepidanaerobacter acetatoxydans Tepidanaerobacter acetatoxydans Re1 1210045 periphery Streptomyces sp. AA0539 Streptomyces sp. AA0539 1210046 periphery Janibacter hoylei Janibacter hoylei PVAS-1 1210884 core Gemmata sp. IIL30 Gemmata sp. IIL30 1210908 periphery Halogranum salarium Halogranum salarium B-1 1211035 periphery Lysinibacillus massiliensis Lysinibacillus massiliensis 4400831 1211112 periphery Pseudomonas psychrophila Pseudomonas psychrophila HA-4 1211114 periphery Pseudoxanthomonas sp. GW2 Pseudoxanthomonas sp. GW2 1211115 core Chelatococcus sp. GW1 Chelatococcus sp. GW1 1211579 periphery Pseudomonas putida NBRC14164 Pseudomonas putida NBRC 14164 1211777 periphery Rhizobium mesoamericanum Rhizobium mesoamericanum STM3625 1211813 periphery Alistipes marseilloanorexicus Candidatus Alistipes marseilloanorexicus AP11 1211814 periphery Bacillus massilioanorexius Bacillus massilioanorexius AP8 1211815 periphery Blastococcus massiliensis Candidatus Blastococcus massiliensis AP3 1211817 periphery Clostridium anorexicamassiliense Candidatus Clostridium anorexicamassiliense AP5 1211819 periphery Holdemania massiliensis Holdemania massiliensis AP2 1211844 core Stoquefichus massiliensis Candidatus Stoquefichus massiliensis AP9 1212548 periphery Pseudomonas stutzeri NF13 Pseudomonas stutzeri NF13 1214065 periphery Enterobacteriaceae bacterium B14 Enterobacteriaceae bacterium B14 1214101 periphery Streptomyces davawensis Streptomyces davawensis JCM4913 1214166 periphery Streptococcus suis 865192 Streptococcus suis 86-5192 1214184 periphery Streptococcus suis 22083 Streptococcus suis 22083 1214217 periphery Streptococcus suis YS72 Streptococcus suis YS72 1214242 periphery Streptomyces collinus Streptomyces collinus Tu 365 1215092 periphery Pseudomonas alcaligenes NBRC14159 Pseudomonas alcaligenes NBRC 14159 1215114 periphery Pseudomonas parafulva Pseudomonas parafulva NBRC 16636 1215343 periphery Liberibacter crescens Liberibacter crescens BT-1 1215915 periphery Lactococcus raffinolactis Lactococcus raffinolactis 4877 1216007 core Pseudoalteromonas ruthenica Pseudoalteromonas ruthenica CP76 1216362 periphery Fusobacterium hwasookii Fusobacterium hwasookii ChDC F128 1216932 periphery Clostridium sp. M240 Clostridium sp. M2/40 1216966 periphery Edwardsiella hoshinae Edwardsiella hoshinae NBRC105699 1216967 periphery Elizabethkingia meningoseptica Elizabethkingia meningoseptica ATCC13253 1216976 periphery Achromobacter xylosoxidans NBRC15126 Achromobacter xylosoxidans NBRC 15126 1217648 periphery Acinetobacter beijerinckii Acinetobacter beijerinckii CIP 110307 1217652 periphery Acinetobacter brisouii Acinetobacter brisouii ANC 4119 1217656 periphery Acinetobacter guillouiae Acinetobacter guillouiae NIPH 991 1217658 periphery Acinetobacter gyllenbergii Acinetobacter gyllenbergii NIPH 230 1217703 core Acinetobacter sp. ANC4105 Acinetobacter sp. ANC 4105 1217705 periphery Acinetobacter sp. ANC3862 Acinetobacter sp. ANC 3862 1217708 periphery Acinetobacter sp. NIPH2100 Acinetobacter sp. NIPH 2100 1217710 periphery Acinetobacter sp. NIPH899 Acinetobacter sp. NIPH 899 1217712 periphery Acinetobacter sp. NIPH758 Acinetobacter sp. NIPH 758 1217713 periphery Acinetobacter sp. NIPH809 Acinetobacter sp. NIPH 809 1217714 periphery Acinetobacter sp. ANC3789 Acinetobacter sp. ANC 3789 1217715 periphery Acinetobacter bohemicus Acinetobacter bohemicus ANC 3994 1217718 periphery Cupriavidus sp. BIS7 Cupriavidus sp. BIS7 1217720 periphery Roseomonas sp. B5 Roseomonas sp. B5 1218074 periphery Burkholderia acidipaludis Burkholderia acidipaludis NBRC 101816 1218075 periphery Burkholderia bannensis Burkholderia bannensis NBRC 103871 1218076 periphery Burkholderia ferrariae Burkholderia ferrariae NBRC 106233 1218084 periphery Burkholderia terrae Burkholderia terrae NBRC 100964 1218086 periphery Citrobacter sedlakii Citrobacter sedlakii NBRC 105722 1218103 periphery Chryseobacterium indologenes Chryseobacterium indologenes NBRC 14944 1218108 core Empedobacter brevis Empedobacter brevis NBRC14943 1218173 periphery Bacillus alcalophilus Bacillus alcalophilus ATCC27647 1218352 periphery Pseudomonas stutzeri KOS6 Pseudomonas stutzeri KOS6 1219031 periphery Comamonas aquatica Comamonas aquatica NBRC 14918 1219035 periphery Novosphingobium tardaugens Novosphingobium tardaugens NBRC 16725 1219045 periphery Sphingobium herbicidovorans Sphingobium herbicidovorans NBRC 16415 1219049 periphery Sphingomonas parapaucimobilis Sphingomonas parapaucimobilis NBRC 15100 1219065 periphery Vibrio proteolyticus Vibrio proteolyticus NBRC 13287 1219072 periphery Vibrio halioticoli Vibrio halioticoli NBRC 102217 1219076 periphery Vibrio alginolyticus NBRC15630 Vibrio alginolyticus NBRC15630 1219077 periphery Vibrio azureus Vibrio azureus NBRC 104587 1219080 periphery Vibrio ezurae Vibrio ezurae NBRC 102218 1219084 periphery Thermotoga hypogea Thermotoga hypogea NBRC 106472 1219375 periphery Xanthomonas cassavae Xanthomonas cassavae CFBP 4642 1219581 periphery Actinomyces sp. S4C9 Actinomyces sp. S4-C9 1219585 periphery Arcanobacterium sp. S3PF19 Arcanobacterium sp. S3PF19 1219626 periphery Peptostreptococcus sp. MV1 Peptostreptococcus sp. MV1 1220534 periphery Methanobacterium sp. Maddingley Methanobacterium sp. Maddingley MBC34 1220535 core alpha proteobacterium IMCC14465 alpha proteobacterium IMCC14465 1220551 periphery Staphylococcus chromogenes Staphylococcus chromogenes MU 970 1220582 periphery Rhizobium rubi Rhizobium rubi NBRC 13261 1220583 periphery Gordonia aichiensis Gordonia aichiensis NBRC 108223 1220589 periphery Lysinibacillus odysseyi Lysinibacillus odysseyi 34hs-1 1221522 periphery Pseudomonas fluorescens NCIMB11764 Pseudomonas fluorescens NCIMB 11764 1221537 periphery Lactobacillus florum Lactobacillus florum 2F 1223410 core Altibacter lentus Altibacter lentus 1223521 periphery Comamonas granuli Comamonas granuli NBRC 101663 1223523 periphery Streptomyces mobaraensis Streptomyces mobaraensis NBRC13819 1223542 periphery Gordonia malaquae Gordonia malaquae NBRC 108250 1223543 periphery Gordonia paraffinivorans Gordonia paraffinivorans NBRC 108238 1223544 periphery Gordonia sihwensis Gordonia sihwensis NBRC 108236 1223545 periphery Gordonia soli Gordonia soli NBRC 108243 1224136 periphery Enterobacteriaceae bacterium LSJC7 Enterobacteriaceae bacterium LSJC7 1224163 periphery Corynebacterium maris Corynebacterium maris DSM45190 1224164 periphery Corynebacterium vitaeruminis Corynebacterium vitaeruminis DSM20294 1224318 core Mangrovibacter sp. MFB070 Mangrovibacter sp. MFB070 1224746 periphery Gluconobacter oxydans H24 Gluconobacter oxydans H24 1225184 periphery Pantoea sp. A4 Pantoea sp. A4 1225785 periphery Dickeya sp. DW 0440 Dickeya sp. DW 0440 1226322 periphery Oscillibacter sp. KLE1728 Oscillibacter sp. KLE 1728 1226325 periphery Clostridium sp. KLE1755 Clostridium sp. KLE 1755 1226994 periphery Pseudomonas nitroreducens TX1 Pseudomonas nitroreducens TX1 1227261 periphery Actinobaculum sp. F0552 Actinobaculum sp. oral taxon 183 str. F0552 1227266 periphery Capnocytophaga sp. F0517 Capnocytophaga sp. oral taxon 863 str. F0517 1227268 periphery Leptotrichia sp. F0557 Leptotrichia sp. oral taxon 879 str. F0557 1227272 periphery Porphyromonas sp. W7784 Porphyromonas sp. oral taxon 278 str. W7784 1227276 periphery Prevotella sp. F0091 Prevotella sp. F0091 1227349 periphery Paenibacillus sp. FSLH7689 Paenibacillus sp. FSL H7-689 1227352 periphery Paenibacillus sp. FSLR7277 Paenibacillus sp. FSL R7-277 1227360 core Viridibacillus arenosi Viridibacillus arenosi FSL R5-213 1227453 periphery Haloarcula japonica Haloarcula japonica DSM6131 1227454 periphery Halobiforma nitratireducens Halobiforma nitratireducens JCM 10879 1227457 periphery Halococcus thailandensis Halococcus thailandensis JCM 13552 1227484 periphery Halorubrum saccharovorum Halorubrum saccharovorum DSM1137 1227487 periphery Halosarcina pallida Halosarcina pallida JCM 14848 1227488 periphery Haloterrigena salina Haloterrigena salina JCM 13891 1227495 periphery Natrinema pallidum Natrinema pallidum DSM3751 1227497 periphery Natronococcus amylolyticus Natronococcus amylolyticus DSM10524 1227499 periphery Natronolimnobius innermongolicus Natronolimnobius innermongolicus JCM 12255 1227500 periphery Natronorubrum bangense Natronorubrum bangense JCM 10635 1227739 periphery Hymenobacter swuensis Hymenobacter swuensis DY53 1229172 core Leptolyngbya sp. KIOST1 Leptolyngbya sp. KIOST-1 1229203 core actinobacterium LLX17 actinobacterium LLX17 1229204 periphery alpha proteobacterium L41A alpha proteobacterium L41A 1229205 periphery Burkholderia phenoliruptrix Burkholderia phenoliruptrix BR3459a 1229276 periphery Sphingobacterium sp. ACCC05744 Sphingobacterium sp. ACCC 05744 1229485 periphery Gammaproteobacteria bacterium WG36 gamma proteobacterium WG36 1229487 core Flavobacterium sp. WG21 Flavobacterium sp. WG21 1229512 periphery Blattabacterium sp. BPAA Blattabacterium sp. (Panesthia angustipennis spadica) 1229517 periphery Lactococcus garvieae I113 Lactococcus garvieae I113 1229520 core Alkalibacterium sp. AK22 Alkalibacterium sp. AK22 1229756 periphery Leuconostoc gelidum JB7 Leuconostoc gelidum JB7 1229758 periphery Leuconostoc carnosum Leuconostoc carnosum JB16 1229780 core Microthrix parvicella Candidatus Microthrix parvicella RN1 1229781 periphery Brevibacterium casei Brevibacterium casei S18 1229783 periphery Staphylococcus massiliensis Staphylococcus massiliensis S46 1229831 periphery Chlamydia avium Chlamydia avium 10DC88 1229909 periphery Nitrosopumilus sp. AR2 Candidatus Nitrosopumilus sp. AR2 1230338 periphery Moraxella macacae Moraxella macacae 0408225 1230341 core Salimicrobium sp. MJ3 Salimicrobium sp. MJ3 1230342 periphery Clostridium tetanomorphum Clostridium tetanomorphum DSM665 1230343 periphery Legionella anisa Legionella anisa str. Linanisette 1230457 periphery Haloterrigena limicola Haloterrigena limicola JCM 13563 1230460 periphery Natronorubrum sulfidifaciens Natronorubrum sulfidifaciens JCM 14089 1230476 periphery Bradyrhizobium sp. DFCI1 Bradyrhizobium sp. DFCI-1 1231057 periphery Paenisporosarcina sp. TG14 Paenisporosarcina sp. TG-14 1231185 periphery Nitratireductor aquibiodomus Nitratireductor aquibiodomus NL21 1231190 periphery Nitratireductor indicus Nitratireductor indicus C115 1231241 periphery Thermotoga sp. Mc24 Thermotoga sp. Mc24 1231336 periphery Lactobacillus shenzhenensis Lactobacillus shenzhenensis LY-73 1231377 periphery Lactococcus garvieae DCC43 Lactococcus garvieae DCC43 1231391 periphery Pusillimonas noertemannii Pusillimonas noertemannii BS8 1231392 core Oceaniovalibus guishaninsula Oceaniovalibus guishaninsula JLT2003 1231626 periphery Cardinium endosymbiont cEper1 Cardinium endosymbiont cEper1 of Encarsia pergandiella 1232410 core Desulfuromonas sp. TF Desulfuromonas sp. TF 1232427 periphery Corynebacterium sp. GD7 Corynebacterium sp. GD7 1232428 periphery Megasphaera sp. NP3 Megasphaera sp. NP3 1232429 periphery Nesterenkonia sp. NP1 Nesterenkonia sp. NP1 1232430 core Nosocomiicoccus sp. NP2 Nosocomiicoccus sp. NP2 1232436 periphery Coriobacteriaceae bacterium GD5 Coriobacteriaceae bacterium GD5 1232437 core Desulfobacula sp. TS Desulfobacula sp. TS 1232443 core Clostridiales bacterium VE20213 Clostridiales bacterium VE202-13 1232446 periphery Clostridiales bacterium VE20218 Clostridiales bacterium VE202-18 1232447 periphery Clostridiales bacterium VE20209 Clostridiales bacterium VE202-09 1232449 periphery Clostridiales bacterium VE20208 Clostridiales bacterium VE202-08 1232452 core Clostridiales bacterium VE20214 Clostridiales bacterium VE202-14 1232453 periphery Clostridiales bacterium VE20221 Clostridiales bacterium VE202-21 1232666 periphery Staphylococcus sciuri Staphylococcus sciuri subsp. sciuri Z8 1232683 core Marinobacterium sp. AK27 Marinobacterium sp. AK27 1233950 periphery Chryseobacterium sp. JM1 Chryseobacterium sp. JM1 1233951 periphery Epilithonimonas sp. FH1 Epilithonimonas sp. FH1 1234364 periphery Dyella ginsengisoli Dyella ginsengisoli LA-4 1234409 core Catellicoccus marimammalium Catellicoccus marimammalium M35/04/3 1234593 periphery Staphylococcus sp. E463 Staphylococcus sp. E463 1234595 periphery alpha proteobacterium JLT2015 alpha proteobacterium JLT2015 1234664 periphery Geobacillus caldoxylosilyticus Geobacillus caldoxylosilyticus CIC9 1234679 periphery Carnobacterium maltaromaticum Carnobacterium maltaromaticum LMA28 1235279 core Bhargavaea cecembensis Bhargavaea cecembensis DSE10 1235457 periphery Ralstonia sp. AU1208 Ralstonia sp. AU12-08 1235755 core Salinicoccus carnicancri Salinicoccus carnicancri Crm 1235788 core Bacteroides massiliensis dnLKV3 Bacteroides massiliensis dnLKV3 1235790 core Eubacterium sp. 142 Eubacterium sp. 14-2 1235792 core Lachnospiraceae bacterium M181 Lachnospiraceae bacterium M18-1 1235793 periphery Lachnospiraceae bacterium COE1 Lachnospiraceae bacterium COE1 1235794 periphery Enterorhabdus caecimuris Enterorhabdus caecimuris B7 1235796 core Firmicutes bacterium M102 Firmicutes bacterium M10-2 1235797 periphery Oscillibacter sp. 13 Oscillibacter sp. 1-3 1235798 periphery Dorea sp. 52 Dorea sp. 5-2 1235799 periphery Lachnospiraceae bacterium 32 Lachnospiraceae bacterium 3-2 1235800 core Lachnospiraceae bacterium 101 Lachnospiraceae bacterium 10-1 1235801 periphery Lactobacillus murinus Lactobacillus murinus ASF361 1235802 core Eubacterium plexicaudatum Eubacterium plexicaudatum ASF492 1235803 periphery Parabacteroides sp. ASF519 Parabacteroides sp. ASF519 1235811 periphery Prevotella disiens JCM6334 Prevotella disiens JCM6334 1235813 periphery Bacteroides pyogenes JCM10003 Bacteroides pyogenes JCM 10003 1235815 periphery Prevotella enoeca Prevotella enoeca JCM 12259 1235835 periphery Anaerotruncus sp. G3 Anaerotruncus sp. G3(2012) 1235990 periphery Halyomorpha halys Halyomorpha halys symbiont 1236494 periphery Prevotella pleuritidis Prevotella pleuritidis JCM 14110 1236497 periphery Prevotella oulorum JCM14966 Prevotella oulorum JCM 14966 1236501 periphery Acetobacter okinawensis Acetobacter okinawensis JCM 25146 1236504 periphery Prevotella histicola Prevotella histicola JCM15637 1236508 periphery Prevotella aurantiaca Prevotella aurantiaca JCM 15754 1236514 periphery Bacteroides stercorirosoris Bacteroides stercorirosoris JCM 17103 1236517 periphery Prevotella fusca Prevotella fusca JCM 17724 1236518 periphery Prevotella scopos Prevotella scopos JCM 17725 1236541 periphery Shewanella haliotis Shewanella haliotis JCM 14758 1236542 periphery Shewanella marina Shewanella marina JCM 15074 1236689 core Methanomethylophilus alvus Candidatus Methanomethylophilus alvus Mx1201 1236902 periphery Nocardiopsis baichengensis Nocardiopsis baichengensis YIM 90130 1236908 periphery Wolbachia sp. Dsi Wolbachia endosymbiont of Drosophila simulans wNo 1236959 periphery Methylobacillus glycogenes Methylobacillus glycogenes JCM 2850 1236973 periphery Bacillus akibai Bacillus akibai JCM 9157 1236976 periphery Paenibacillus pini Paenibacillus pini JCM 16418 1237149 periphery Fulvivirga imtechensis Fulvivirga imtechensis AK7 1237500 periphery Nocardiopsis ganjiahuensis Nocardiopsis ganjiahuensis DSM45031 1238182 core Caenispirillum salinarum Caenispirillum salinarum AK4 1238184 periphery Oceanobacillus kimchii Oceanobacillus kimchii X50 1238186 periphery Leucobacter salsicius Leucobacter salsicius M1-8 1238190 periphery Halomonas jeotgali Halomonas jeotgali Hwa 1238237 periphery Chlamydia psittaci 10139811 Chlamydia psittaci 10_1398_11 1238425 periphery Haloquadratum walsbyi J07HQW2 Haloquadratum walsbyi J07HQW2 1238450 periphery Vibrio nigripulchritudo Vibrio nigripulchritudo SOn1 1239415 periphery Dokdonia sp. PRO95 Dokdonia sp. PRO95 1239962 periphery Mariniradius saccharolyticus Mariniradius saccharolyticus AK6 1240349 periphery Rhodococcus ruber Rhodococcus ruber Chol-4 1240350 periphery Pseudomonas putida MTCC5279 Pseudomonas putida MTCC 5279 1242864 periphery Cystobacter fuscus Cystobacter fuscus DSM2262 1242969 periphery Campylobacter concisus ATCC51562 Campylobacter concisus ATCC51562 1243664 periphery Bacillus sp. G2 Bacillus sp. G2(2012b) 1244083 periphery Campylobacter showae CSUNSWCD Campylobacter showae CSUNSWCD 1244528 periphery Campylobacter fetus testudinum Campylobacter fetus subsp. testudinum 03-427 1244531 periphery Campylobacter sp. 1485E Campylobacter sp. 1485E 1244869 core Magnetospirillum sp. SO1 Magnetospirillum sp. SO-1 1245469 periphery Bradyrhizobium oligotrophicum Bradyrhizobium oligotrophicum S58 1245471 periphery Pseudomonas resinovorans NBRC106553 Pseudomonas resinovorans NBRC 106553 1245475 periphery Nocardiopsis prasina Nocardiopsis prasina DSM43845 1246445 periphery Nocardiopsis kunsanensis Nocardiopsis kunsanensis DSM44524 1246448 periphery Nocardiopsis valliformis Nocardiopsis valliformis DSM45023 1246459 periphery Rhizobium sp. 2MFCol31 Rhizobium sp. 2MFCol3.1 1246474 periphery Nocardiopsis xinjiangensis Nocardiopsis xinjiangensis YIM 90004 1246484 core Halobacillus sp. BAB2008 Halobacillus sp. BAB-2008 1246626 periphery Bacillus lehensis Bacillus lehensis G1 1246955 periphery Mycoplasma cynos Mycoplasma cynos C142 1246995 periphery Actinoplanes friuliensis Actinoplanes friuliensis DSM7358 1247024 core Arsenophonus endosymbiont Arsenophonus endosymbiont str. Hangzhou of Nilaparvata lugens 1247649 periphery Bordetella holmesii Bordetella holmesii ATCC51541 1247726 periphery Advenella mimigardefordensis Advenella mimigardefordensis DPN7 1247963 periphery Parvularcula oceani Parvularcula oceani 1248232 periphery Photobacterium leiognathi lrivu41 Photobacterium leiognathi lrivu.4.1 1248760 periphery Blastomonas sp. AAP53 Blastomonas sp. AAP53 1248916 periphery Sandarakinorhabdus sp. AAP62 Sandarakinorhabdus sp. AAP62 1248917 periphery Porphyrobacter sp. AAP82 Porphyrobacter sp. AAP82 1249480 periphery Sulfuricurvum sp. RIFRC1 Candidatus Sulfuricurvum sp. RIFRC-1 1249627 core Thiorhodococcus sp. AK35 Thiorhodococcus sp. AK35 1249634 periphery Serratia marcescens FGI94 Serratia marcescens FGI94 1249975 core Gillisia sp. HelI29 Gillisia sp. Hel_I_29 1249997 periphery Maribacter sp. HelI7 Maribacter sp. Hel_I_7 1250005 periphery Polaribacter sp. Hel185 Polaribacter sp. Hel1_85 1250006 periphery Polaribacter sp. HelI88 Polaribacter sp. Hel_I_88 1250232 periphery Muricauda sp. MAR201075 Muricauda sp. MAR_2010_75 1250278 core Salegentibacter sp. HelI6 Salegentibacter sp. Hel_I_6 1254432 periphery Sorangium cellulosum So01572 Sorangium cellulosum So0157-2 1255043 periphery Thioalkalivibrio nitratireducens Thioalkalivibrio nitratireducens DSM14787 1256908 core Eubacterium ramulus Eubacterium ramulus ATCC29099 1259795 periphery Coprothermobacter platensis Coprothermobacter platensis DSM11748 1260251 core Spiribacter salinus Spiribacter salinus M19-40 1260356 periphery Enterococcus faecalis 13SDW01 Enterococcus faecalis 13-SD-W-01 1261131 periphery Liberibacter americanus Candidatus Liberibacter americanus str. Sao Paulo 1261545 periphery Halarchaeum acidiphilum Halarchaeum acidiphilum MH1-52-1 1262449 periphery Clostridium pasteurianum DSM525 Clostridium pasteurianum DSM525 1262914 periphery Phascolarctobacterium sp. CAG207 Phascolarctobacterium sp. CAG:207 1262915 periphery Phascolarctobacterium sp. CAG266 Phascolarctobacterium sp. CAG:266 1263831 periphery Bibersteinia trehalosi Bibersteinia trehalosi USDA-ARS-USMARC-189 1265310 periphery Mycobacterium asiaticum Mycobacterium asiaticum DSM44297 1265313 periphery Haliea rubra Haliea rubra DSM19751 1265490 periphery Pseudomonas sp. URMO17WK12I8 Pseudomonas sp. URMO17WK12:I8 1265502 core Caldimonas manganoxidans Caldimonas manganoxidans ATCC BAA-369 1265503 periphery Colwellia piezophila Colwellia piezophila ATCC BAA-637 1265505 core Desulfospira joergensenii Desulfospira joergensenii DSM10085 1265507 periphery Succinimonas amylolytica Succinimonas amylolytica DSM2873 1265756 periphery Pelagibacter ubique HTCC9022 Candidatus Pelagibacter ubique HTCC9022 1265845 periphery Listeria weihenstephanensis Listeria weihenstephanensis FSL R9-0317 1266845 core Carnobacterium sp. WN1359 Carnobacterium sp. WN1359 1266908 periphery Thioalkalivibrio sp. ALE6 Thioalkalivibrio sp. ALE6 1266909 periphery Thioalkalivibrio sp. ALE19 Thioalkalivibrio sp. ALE19 1266914 periphery Thioalkalivibrio sp. AKL19 Thioalkalivibrio sp. AKL19 1266925 periphery Nitrosospira briensis Nitrosospira briensis C-128 1266998 periphery Paracoccus zeaxanthinifaciens Paracoccus zeaxanthinifaciens ATCC21588 1267003 periphery Lactobacillus parabrevis Lactobacillus parabrevis ATCC53295 1267005 periphery Hyphomicrobium zavarzinii Hyphomicrobium zavarzinii ATCC27496 1267211 periphery Sediminibacterium sp. C3 Sediminibacterium sp. C3 1267533 periphery Acidobacteriaceae bacterium KBS83 Acidobacteriaceae bacterium KBS 83 1267534 periphery Acidobacteriaceae bacterium KBS89 Acidobacteriaceae bacterium KBS 89 1267535 periphery Acidobacteriaceae bacterium KBS96 Acidobacteriaceae bacterium KBS 96 1267580 core Anoxybacillus flavithermus TNO09006 Anoxybacillus flavithermus TNO-09.006 1267600 periphery Pantoea sp. IMH Pantoea sp. IMH 1268068 periphery Pseudomonas sp. G5 Pseudomonas sp. G5(2012) 1268072 periphery Paenibacillus sabinae Paenibacillus sabinae T27 1268237 periphery Aeromonas diversa Aeromonas diversa 2478-85 1268239 core Pseudoalteromonas luteoviolacea Pseudoalteromonas luteoviolacea B 1268240 periphery Bacteroides cellulosilyticus Bacteroides cellulosilyticus WH2 1268303 periphery Rhodococcus sp. AW25M09 Rhodococcus sp. AW25M09 1268622 periphery Acidovorax sp. MRS7 Acidovorax sp. MR-S7 1268635 periphery Legionella oakridgensis Legionella oakridgensis ATCC33761 1269813 periphery Thioalkalivibrio sp. ALR1721 Thioalkalivibrio sp. ALR17-21 1270193 core Flavobacterium sp. KJJ Flavobacterium sp. KJJ 1270196 periphery Pedobacter sp. R2019 Pedobacter sp. R20-19 1273103 core Megasphaera sp. NM10 Megasphaera sp. NM10 1273125 periphery Rhodococcus rhodnii Rhodococcus rhodnii LMG 5362 1273538 core Planomicrobium glaciei Planomicrobium glaciei CHR43 1274374 periphery Paenibacillus sp. GD11 Paenibacillus sp. GD11 1274402 periphery Hepatobacter penaei Candidatus Hepatobacter penaei 1274524 periphery Bacillus sonorensis Bacillus sonorensis L12 1276220 periphery Spiroplasma taiwanense Spiroplasma taiwanense CT-1 1276221 core Spiroplasma diminutum Spiroplasma diminutum CUAS-1 1276227 periphery Spiroplasma chrysopicola Spiroplasma chrysopicola DF-1 1276229 periphery Spiroplasma syrphidicola Spiroplasma syrphidicola EA-1 1276246 core Spiroplasma culicicola Spiroplasma culicicola AES-1 1276257 periphery Spiroplasma sabaudiense Spiroplasma sabaudiense Ar-1343 1276258 periphery Spiroplasma apis Spiroplasma apis B31 1276756 periphery Acidovorax sp. JHL9 Acidovorax sp. JHL-9 1276920 periphery Arthrobacter gangotriensis Arthrobacter gangotriensis Lz1y 1278073 periphery Myxococcus stipitatus Myxococcus stipitatus DSM14675 1278078 periphery Rhodococcus triatomae Rhodococcus triatomae BKS 15-14 1278304 periphery Acholeplasma granularum Acholeplasma granularum ATCC19168 1278306 core Fusobacterium russii Fusobacterium russii ATCC25533 1278307 periphery Psychromonas ossibalaenae Psychromonas ossibalaenae ATCC BAA-1528 1278308 periphery Zimmermannella faecalis Zimmermannella faecalis ATCC13722 1278309 core Amphritea japonica Amphritea japonica ATCC BAA-1530 1278311 periphery Acholeplasma axanthum Acholeplasma axanthum ATCC25176 1278971 periphery Avibacterium paragallinarum 221 Avibacterium paragallinarum 221 1279009 periphery Cesiribacter andamanensis Cesiribacter andamanensis AMV16 1279015 periphery Oceanimonas smirnovii Oceanimonas smirnovii ATCC BAA-899 1279017 periphery Microbulbifer variabilis Microbulbifer variabilis ATCC700307 1279019 periphery Thioalkalivibrio thiocyanoxidans ARh2 Thioalkalivibrio thiocyanoxidans ARh2 1279038 core Novispirillum itersonii Novispirillum itersonii subsp. itersonii ATCC12639 1280001 periphery Vibrio jasicida Vibrio jasicida MWB 21 1280380 periphery Synechococcus sp. KORDI100 Synechococcus sp. KORDI-100 1280390 core Paenibacillaceae bacterium G5 Paenibacillaceae bacterium G5 1280663 core Butyrivibrio sp. AE2015 Butyrivibrio sp. AE2015 1280664 periphery Butyrivibrio sp. VCD2006 Butyrivibrio sp. VCD2006 1280666 core Butyrivibrio sp. AE3009 Butyrivibrio sp. AE3009 1280668 periphery Butyrivibrio sp. XPD2006 Butyrivibrio sp. XPD2006 1280671 periphery Butyrivibrio sp. FC2001 Butyrivibrio sp. FC2001 1280673 periphery Butyrivibrio sp. AE3006 Butyrivibrio sp. AE3006 1280674 periphery Prevotella sp. AGR2160 Prevotella sp. AGR2160 1280676 periphery Butyrivibrio sp. WCD3002 Butyrivibrio sp. WCD3002 1280679 periphery Butyrivibrio sp. VCB2006 Butyrivibrio sp. VCB2006 1280680 periphery Butyrivibrio sp. LC3010 Butyrivibrio sp. LC3010 1280681 periphery Butyrivibrio sp. WCD2001 Butyrivibrio sp. WCD2001 1280682 core Butyrivibrio sp. XBB1001 Butyrivibrio sp. XBB1001 1280685 periphery Butyrivibrio sp. NC3005 Butyrivibrio sp. NC3005 1280686 periphery Butyrivibrio sp. MC2013 Butyrivibrio sp. MC2013 1280688 periphery Pseudobutyrivibrio ruminis CF1b Pseudobutyrivibrio ruminis CF1b 1280689 periphery Clostridium paraputrificum Clostridium paraputrificum AGR2156 1280692 periphery Clostridium cadaveris Clostridium cadaveris AGR2141 1280694 core Pseudobutyrivibrio ruminis AD2017 Pseudobutyrivibrio ruminis AD2017 1280696 periphery Butyrivibrio fibrisolvens ND3005 Butyrivibrio fibrisolvens ND3005 1280698 periphery Dorea longicatena AGR2136 Dorea longicatena AGR2136 1280706 periphery Selenomonas ruminantium ATCC12561 Selenomonas ruminantium subsp. ruminantium ATCC12561 1280941 periphery Hyphomonas sp. T16B2 Hyphomonas sp. T16B2 1280944 periphery Hyphomonas sp. CY54118 Hyphomonas sp. CY54-11-8 1280946 periphery Hyphomonas sp. 25B141 Hyphomonas sp. 25B14_1 1280947 periphery Hyphomonas sp. BHBN044 Hyphomonas sp. BH-BN04-4 1280948 periphery Hyphomonas sp. 22II122F38 Hyphomonas sp. 22II1-22F38 1280949 periphery Hyphomonas adhaerens Hyphomonas adhaerens MHS-3 1280950 periphery Hyphomonas johnsonii Hyphomonas johnsonii MHS-2 1280952 periphery Hyphomonas jannaschiana Hyphomonas jannaschiana VP2 1280953 periphery Hyphomonas oceanitis Hyphomonas oceanitis SCH89 1280954 periphery Hyphomonas polymorpha Hyphomonas polymorpha PS728 1281779 periphery Agrobacterium tumefaciens Cherry Agrobacterium tumefaciens str. Cherry 2E-2-2 1282356 periphery Pseudomonas poae Pseudomonas poae RE*1-1-14 1282360 periphery Asticcacaulis sp. AC460 Asticcacaulis sp. AC460 1282361 periphery Asticcacaulis sp. AC402 Asticcacaulis sp. AC402 1282362 core Asticcacaulis sp. AC466 Asticcacaulis sp. AC466 1282664 periphery Streptococcus tigurinus AZ3a Streptococcus tigurinus AZ_3a 1282665 periphery Streptococcus tigurinus 1366 Streptococcus tigurinus 1366 1282876 periphery alpha proteobacterium Mf 105b01 alpha proteobacterium Mf 1.05b.01 1282887 periphery Lachnospira multipara ATCC19207 Lachnospira multipara ATCC19207 1283283 periphery Frankia sp. Iso899 Frankia sp. Iso899 1283284 periphery Tolumonas sp. BRL61 Tolumonas sp. BRL6-1 1283287 periphery Nocardioides sp. Iso805N Nocardioides sp. Iso805N 1283299 periphery Conexibacter woesei Iso977N Conexibacter woesei Iso977N 1283300 core Methylohalobius crimeensis Methylohalobius crimeensis 10Ki 1284352 periphery Paenibacillus sp. A9 Paenibacillus sp. A9 1284679 core Actinomyces urogenitalis S6C4 Actinomyces urogenitalis S6-C4 1284680 periphery Actinomyces sp. S6Spd3 Actinomyces sp. S6-Spd3 1284686 periphery Anaerococcus lactolyticus S7113 Anaerococcus lactolyticus S7-1-13 1284708 core Clostridiales bacterium S714 Clostridiales bacterium S7-1-4 1284775 periphery Prevotella sp. S718 Prevotella sp. S7-1-8 1285583 periphery Corynebacterium casei Corynebacterium casei LMG S-19264 1285586 periphery Lysinibacillus sphaericus OT4b31 Lysinibacillus sphaericus OT4b.31 1286093 periphery Pandoraea sp. SD62 Pandoraea sp. SD6-2 1286106 periphery Methylophaga lonarensis Methylophaga lonarensis MPL 1286170 core Raoultella ornithinolytica Raoultella ornithinolytica B6 1286171 core Eubacterium acidaminophilum Eubacterium acidaminophilum DSM3953 1286631 core Sphaerotilus natans Sphaerotilus natans subsp. natans DSM6575 1286632 core Zhouia amylolytica Zhouia amylolytica AD3 1287116 periphery Mesorhizobium sp. L2C084A000 Mesorhizobium sp. L2C084A000 1287276 periphery Mesorhizobium sp. LNJC398B00 Mesorhizobium sp. LNJC398B00 1287475 periphery Corynebacterium freneyi Corynebacterium freneyi DNF00450 1287476 core Prevotella bivia DNF00188 Prevotella bivia DNF00188 1287488 core Prevotella sp. S7 MS 2 Prevotella sp. S7 MS 2 1288079 periphery Streptomyces sp. CNT318 Streptomyces sp. CNT318 1288083 periphery Streptomyces sp. TAA040 Streptomyces sp. TAA040 1288298 periphery Roseovarius mucosus Roseovarius mucosus DSM17069 1288484 periphery Deinococcus wulumuqiensis Deinococcus wulumuqiensis R12 1288494 periphery Nitrosospira sp. APG3 Nitrosospira sp. APG3 1288826 periphery Marinobacter santoriniensis Marinobacter santoriniensis NKSG1 1288963 periphery Cyclobacteriaceae bacterium AK24 Cyclobacteriaceae bacterium AK24 1289135 periphery Brachyspira hampsonii Brachyspira hampsonii 30446 1289387 periphery Streptomyces sp. TAA204 Streptomyces sp. TAA204 1291050 periphery Clostridium josui [Clostridium] josui JCM 17888 1291743 periphery Lactobacillus oryzae Lactobacillus oryzae JCM 18671 1292020 periphery Dietzia sp. UCDTHP Dietzia sp. UCD-THP 1292033 periphery Mycoplasma putrefaciens Mput9231 Mycoplasma putrefaciens Mput9231 1292034 periphery Caulobacter crescentus OR37 Caulobacter crescentus OR37 1292035 periphery Clostridium sordellii [Clostridium] sordellii VPI 9048 1292373 periphery Propionibacterium granulosum Propionibacterium granulosum TM11 1293047 periphery Halopiger sp. IIH2 Halopiger sp. IIH2 1293048 periphery Halopiger sp. IIH3 Halopiger sp. IIH3 1293054 periphery Halanaerobium saccharolyticum Halanaerobium saccharolyticum subsp. saccharolyticum DSM6643 1293597 periphery Lactobacillus equicursoris Lactobacillus equicursoris DSM19284 1294142 periphery Clostridium intestinale Clostridium intestinale URNW 1294143 periphery Pseudomonas denitrificans Pseudomonas denitrificans ATCC13867 1294265 periphery Bacillus boroniphilus Bacillus boroniphilus JCM 21738 1294273 core Roseibacterium elongatum Roseibacterium elongatum DSM19469 1295642 periphery Geobacillus stearothermophilus Geobacillus stearothermophilus NUB3621 1296415 periphery Aquimarina sp. SW150 Aquimarina sp. SW150 1296416 core Aquimarina megaterium Aquimarina megaterium XH134 1296990 periphery Komagataeibacter xylinus Komagataeibacter xylinus E25 1297534 periphery Streptococcus dentisani 7746 Streptococcus dentisani 7746 1297569 periphery Mesorhizobium metallidurans Mesorhizobium metallidurans STM 2683 1297570 periphery Mesorhizobium sp. STM4661 Mesorhizobium sp. STM 4661 1297581 periphery Anoxybacillus flavithermus AK1 Anoxybacillus flavithermus AK1 1297617 core Intestinimonas butyriciproducens Intestinimonas butyriciproducens 1297742 periphery Myxococcus sp. Myxococcus sp. (contaminant ex DSM436) 1297857 periphery Streptococcus dentisani 7747 Streptococcus dentisani 7747 1297863 periphery Afipia sp. OHSUIC4 Afipia sp. OHSU_I-C4 1297865 periphery Bradyrhizobium sp. OHSUIII Bradyrhizobium sp. OHSU_III 1298593 core Thalassolituus oleivorans Thalassolituus oleivorans MIL-1 1298598 periphery Gracilibacillus boraciitolerans Gracilibacillus boraciitolerans JCM 21714 1298608 periphery Psychrobacter sp. JCM18900 Psychrobacter sp. JCM 18900 1298858 periphery Mesorhizobium sp. URHA0056 Mesorhizobium sp. URHA0056 1298860 periphery Microbacterium sp. URHA0036 Microbacterium sp. URHA0036 1298863 periphery Marmoricola sp. URHB0036 Marmoricola sp. URHB0036 1298864 periphery Mycobacterium sp. URHD0025 Mycobacterium sp. URHD0025 1298865 periphery Alteromonas sp. ALT199 Alteromonas sp. ALT199 1298867 periphery Bradyrhizobium sp. URHA0002 Bradyrhizobium sp. URHA0002 1298880 periphery Streptomyces sp. TAA486 Streptomyces sp. TAA486 1298920 core Desulfotomaculum guttoideum [Desulfotomaculum] guttoideum DSM4024 1299327 periphery Mycobacterium kansasii 732 Mycobacterium kansasii 732 1300143 periphery Chryseobacterium oranimense Chryseobacterium oranimense G311 1300150 core Enterococcus mundtii Enterococcus mundtii QU 25 1300345 periphery Lysobacter dokdonensis Lysobacter dokdonensis DS-58 1300350 periphery Sulfitobacter donghicola Sulfitobacter donghicola DSW-25 1301098 periphery Pseudomonas knackmussii Pseudomonas knackmussii B13 1301100 periphery Clostridium sp. 01 Clostridium sp. 01 1302286 periphery Lactobacillus namurensis Lactobacillus namurensis str. Chizuka 01 1302858 periphery Borrelia miyamotoi Borrelia miyamotoi LB-2001 1302863 periphery Streptococcus oligofermentans Streptococcus oligofermentans AS 1.3089 1303518 core Chthonomonas calidirosea Chthonomonas calidirosea T49 1303692 periphery Streptomyces fulvissimus Streptomyces fulvissimus DSM40593 1304275 periphery Salinisphaera hydrothermalis Salinisphaera hydrothermalis C41B8 1304284 core Clostridiaceae bacterium L21THD2 Clostridiaceae bacterium L21-TH-D2 1304865 periphery Cellulomonas sp. KRMCY2 Cellulomonas sp. KRMCY2 1304866 periphery Clostridium sp. ASBs410 Clostridium sp. ASBs410 1304872 periphery Desulfovibrio magneticus IFRC170 Desulfovibrio cf. magneticus IFRC170 1304874 core Aminiphilus circumscriptus Aminiphilus circumscriptus DSM16581 1304875 periphery Aminobacterium mobile Aminobacterium mobile DSM12262 1304876 periphery Arthrobacter nicotinovorans Arthrobacter nicotinovorans 231Sha2.1M6 1304877 periphery Bradyrhizobium japonicum 22 Bradyrhizobium japonicum 22 1304878 periphery Bradyrhizobium japonicum in8p8 Bradyrhizobium japonicum in8p8 1304880 core Caldicoprobacter oshimai Caldicoprobacter oshimai DSM21659 1304883 periphery Dechloromonas agitata Dechloromonas agitata is5 1304885 core Desulforegula conservatrix Desulforegula conservatrix Mb1Pa 1304888 periphery Geovibrio sp. L21AceBES Geovibrio sp. L21-Ace-BES 1305732 periphery Microbacterium sp. KROCY2 Microbacterium sp. KROCY2 1305735 periphery Oceanicola sp. HL35 Oceanicola sp. HL-35 1305737 periphery Algoriphagus marincola HL49 Algoriphagus marincola HL-49 1305836 core Sporosarcina sp. EUR3222 Sporosarcina sp. EUR3 2.2.2 1306174 periphery Kineosporia aurantiaca Kineosporia aurantiaca JCM 3230 1306406 periphery Streptomyces thermolilacinus Streptomyces thermolilacinus SPC6 1306947 core candidate division TM6 candidate division TM6 bacterium JCVI TM6SC1 1306990 periphery Streptomyces sp. R1NS10 Streptomyces sp. R1-NS-10 1307436 periphery Bacillus firmus Bacillus firmus DS1 1307437 core Pseudoalteromonas agarivorans Pseudoalteromonas agarivorans S816 1307759 periphery Desulfovibrio sp. L21SyrAB Desulfovibrio sp. L21-Syr-AB 1307761 core Spirochaeta sp. L21RPulD2 Spirochaeta sp. L21-RPul-D2 1307834 periphery Gluconobacter frateurii Gluconobacter frateurii NBRC 103465 1308866 periphery Gracilibacillus halophilus Gracilibacillus halophilus YIM-C55.5 1312954 periphery Arthrobacter sp. Br18 Arthrobacter sp. Br18 1312959 periphery Arthrobacter sp. H14 Arthrobacter sp. H14 1313172 periphery Ilumatobacter coccineus Ilumatobacter coccineus YM16-304 1313265 periphery Thermocrinis sp. GBS Thermocrinis sp. GBS 1313292 periphery Borrelia coriaceae Borrelia coriaceae Co53 1313293 periphery Borrelia anserina Borrelia anserina BA2 1313294 periphery Borrelia parkeri Borrelia parkeri SLO 1313301 core Thermonema rossianum Thermonema rossianum DSM10300 1313304 periphery Chitinivibrio alkaliphilus Chitinivibrio alkaliphilus ACht1 1313421 periphery Aureispira sp. CCBQB1 Aureispira sp. CCB-QB1 1316408 periphery Streptococcus sp. HSISM1 Streptococcus sp. HSISM1 1316444 periphery Blattabacterium sp. Nci Blattabacterium sp. (Nauphoeta cinerea) 1316927 periphery Pseudomonas corrugata Pseudomonas corrugata CFBP 5454 1316932 periphery Mannheimia haemolytica M42548 Mannheimia haemolytica M42548 1316936 core Phaeospirillum fulvum Phaeospirillum fulvum MGU-K5 1317118 core Roseivivax sp. 22IIs10s Roseivivax sp. 22II-s10s 1317122 core Aquimarina sp. 22IIS11z7 Aquimarina sp. 22II-S11-z7 1317124 core Thioclava sp. 13D2W2 Thioclava sp. 13D2W-2 1318617 periphery Mycoplasma girerdii Candidatus Mycoplasma girerdii 1318628 periphery Marinobacter lipolyticus SM19 Marinobacter lipolyticus SM19 1319815 core Cetobacterium somerae Cetobacterium somerae ATCC BAA-474 1320556 periphery Mesorhizobium sp. NBIMCP2C3 Mesorhizobium sp. NBIMC_P2-C3 1321372 periphery Streptococcus suis EA183292 Streptococcus suis EA1832.92 1321773 periphery Atopobium sp. F0209 Atopobium sp. oral taxon 810 str. F0209 1321774 core Leptotrichia sp. F0581 Leptotrichia sp. oral taxon 225 str. F0581 1321775 periphery Actinomyces sp. F0311 Actinomyces sp. oral taxon 172 str. F0311 1321778 periphery Clostridiales bacterium F0540 Clostridiales bacterium oral taxon 876 str. F0540 1321779 periphery Leptotrichia sp. W9775 Leptotrichia sp. oral taxon 215 str. W9775 1321781 periphery Mitsuokella sp. W9106 Mitsuokella sp. oral taxon 131 str. W9106 1321782 periphery Oribacterium sp. F0263 Oribacterium sp. oral taxon 078 str. F0263 1321784 periphery Peptostreptococcaceae bacterium W5053 Peptostreptococcaceae bacterium oral taxon 113 str. W5053 1321786 periphery Selenomonas sp. F0426 Selenomonas sp. oral taxon 892 str. F0426 1321814 core Eubacterium brachy Eubacterium brachy ATCC33089 1321815 periphery Treponema lecithinolyticum Treponema lecithinolyticum ATCC700332 1321820 periphery Gemella bergeriae Gemella bergeriae ATCC700627 1322246 periphery Desulfovibrio piezophilus Desulfovibrio piezophilus C1TLV30 1323361 periphery Rhodococcus defluvii Rhodococcus defluvii 1323663 periphery Pseudomonas pelagia Pseudomonas pelagia CL-AP6 1324957 periphery Halobonum tyrrellensis Candidatus Halobonum tyrrellensis G22 1325130 periphery Helicobacter fennelliae Helicobacter fennelliae MRY12-0050 1328313 core Catenovulum agarivorans DS2 Catenovulum agarivorans DS-2 1329250 periphery Weissella oryzae Weissella oryzae SG25 1329516 core Thermoactinomyces daqus Thermoactinomyces daqus 1330700 periphery Thermus caliditerrae Thermus caliditerrae 1331060 periphery Sphingobium lactosutens Sphingobium lactosutens DS20 1331660 periphery Acinetobacter haemolyticus Acinetobacter haemolyticus MTCC 9819 1332071 periphery Serratia fonticola AUAP2C Serratia fonticola AU-AP2C 1333507 periphery Pseudoalteromonas haloplanktis TB64 Pseudoalteromonas haloplanktis TB64 1333523 periphery Salinarchaeum sp. HarchtBsk1 Salinarchaeum sp. Harcht-Bsk1 1333856 periphery Pseudomonas stutzeri MF28 Pseudomonas stutzeri MF28 1333998 core alpha proteobacterium MA2 alpha proteobacterium MA2 1334046 core Kurthia huakuii Kurthia huakuii LAM0618 1335757 periphery Spiribacter sp. UAHSP71 Spiribacter sp. UAH-SP71 1335760 periphery Sphingobium sp. YL23 Sphingobium sp. YL23 1336208 periphery Roseomonas gilardii Roseomonas gilardii subsp. rosea ATCC BAA-691 1336233 periphery Shewanella waksmanii Shewanella waksmanii ATCC BAA-643 1336234 core Atopobacter phocae Atopobacter phocae ATCC BAA-285 1336235 periphery Rhizobium selenitireducens Rhizobium selenitireducens ATCC BAA-1503 1336237 periphery Pseudomonas flectens Pseudomonas flectens ATCC12775 1336241 core Eubacterium xylanophilum Eubacterium xylanophilum ATCC35991 1336243 periphery Microvirga flocculans Microvirga flocculans ATCC BAA-817 1336245 periphery Carnimonas nigrificans Carnimonas nigrificans ATCC BAA-78 1336249 periphery Rhizobium larrymoorei Rhizobium larrymoorei ATCC51759 1336803 core Polaribacter sp. Hel13349 Polaribacter sp. Hel1_33_49 1337093 periphery Loktanella cinnabarina Loktanella cinnabarina LL-001 1337936 periphery Calothrix sp. 3363 Calothrix sp. 336/3 1338011 periphery Elizabethkingia anophelis Elizabethkingia anophelis NUHP1 1340434 periphery Bacillus sp. UNC438CL73TsuS30 Bacillus sp. UNC438CL73TsuS30 1340493 periphery Bryobacter aggregatus Bryobacter aggregatus MPL3 1341151 periphery Laceyella sacchari Laceyella sacchari 1-1 1341155 periphery Flavobacterium saliperosum Flavobacterium saliperosum S13 1341157 periphery Ruminococcus flavefaciens 007c Ruminococcus flavefaciens 007c 1341181 periphery Flavobacterium limnosediminis Flavobacterium limnosediminis JC2902 1341646 periphery Mycobacterium septicum Mycobacterium septicum DSM44393 1341679 periphery Acinetobacter indicus Acinetobacter indicus CIP 110367 1341695 periphery Bifidobacterium bombi Bifidobacterium bombi DSM19703 1342299 periphery Sulfitobacter sp. MM124 Sulfitobacter sp. MM-124 1342301 periphery Sulfitobacter sp. NB77 Sulfitobacter sp. NB-77 1342302 periphery Sulfitobacter sp. NB68 Sulfitobacter sp. NB-68 1343158 periphery Saccharibacter sp. AM169 Saccharibacter sp. AM169 1343739 core Palaeococcus pacificus Palaeococcus pacificus DY20341 1343740 periphery Streptomyces rapamycinicus Streptomyces rapamycinicus NRRL 5491 1344012 periphery Tatumella sp. NML063099 Tatumella sp. NML 06-3099 1345023 periphery Exiguobacterium pavilionensis Exiguobacterium pavilionensis RW-2 1345592 periphery Helicobacter pylori SA213A Helicobacter pylori SA213A 1345695 periphery Clostridium saccharobutylicum Clostridium saccharobutylicum DSM13864 1345697 periphery Geobacillus sp. JF8 Geobacillus sp. JF8 1346330 periphery Sphingobacterium paucimobilis Sphingobacterium paucimobilis HER1398 1346791 periphery Sphingobium ummariense Sphingobium ummariense RL-3 1347086 periphery Bacillus sp. EB01 Bacillus sp. EB01 1347087 core Paucisalibacillus sp. EB02 Paucisalibacillus sp. EB02 1347342 periphery Formosa agariphila Formosa agariphila KMM 3901 1347368 periphery Bacillus sp. FF3 Bacillus sp. FF3 1347369 periphery Bacillus sp. FF4 Bacillus sp. FF4 1347392 core Anaerosalibacter sp. ND1 Anaerosalibacter sp. ND1 1347393 periphery Bacteroidaceae bacterium MS4 Bacteroidaceae bacterium MS4 1348114 core Pseudoalteromonas sp. OCN003 Pseudoalteromonas sp. OCN003 1348338 periphery Leifsonia rubra Leifsonia rubra CMS 76R 1348583 periphery Cellulophaga baltica Cellulophaga baltica 13 1348635 periphery Vibrio diazotrophicus Vibrio diazotrophicus NBRC 103148 1348657 periphery Thauera terpenica Thauera terpenica 58Eu 1348662 periphery Corynebacterium argentoratense Corynebacterium argentoratense DSM44202 1348663 periphery Kitasatospora cheerisanensis Kitasatospora cheerisanensis KCTC 2395 1348908 periphery Bacillus megaterium MSP201 Bacillus megaterium MSP20.1 1349767 periphery Janthinobacterium agaricidamnosum Janthinobacterium agaricidamnosum NBRC102515 1349785 periphery Tenacibaculum maritimum Tenacibaculum maritimum NBRC 15946 1349820 periphery Arthrobacter sp. AKYN10 Arthrobacter sp. AK-YN10 1349822 core Coprobacter fastidiosus Coprobacter fastidiosus NSB1 1352941 periphery Streptomyces niveus Streptomyces niveus NCIMB 11891 1353276 core Olleya marilimosa Olleya marilimosa CAM030 1353528 periphery Thioclava sp. DT234 Thioclava sp. DT23-4 1353529 periphery Bacteriovorax sp. BSW11IV Bacteriovorax sp. BSW11_IV 1353531 periphery Ensifer sp. TW10 Ensifer sp. TW10 1353537 core Thioclava pacifica Thioclava pacifica DSM10166 1354300 core Peptoniphilus sp. ChDC Peptoniphilus sp. ChDC B134 1354303 periphery Psychrobacter aquaticus Psychrobacter aquaticus CMS 56 1354314 periphery Cardinium endosymbiont cBtQ1 Cardinium endosymbiont cBtQ1 of Bemisia tabaci 1354722 periphery Roseovarius sp. MCTG156 Roseovarius sp. MCTG156(2b) 1355368 periphery Arcobacter sp. AF1028 Arcobacter sp. AF1028 1355374 periphery Arcobacter sp. AF1440 Arcobacter sp. AF1440 1356852 core Hymenobacter sp. APR13 Hymenobacter sp. APR13 1356854 periphery Alicyclobacillus acidoterrestris Alicyclobacillus acidoterrestris ATCC49025 1357272 periphery Pseudomonas syringae CC1417 Pseudomonas syringae CC1417 1357275 periphery Pseudomonas syringae CC1513 Pseudomonas syringae CC1513 1357279 periphery Pseudomonas syringae CC1557 Pseudomonas syringae CC1557 1357399 periphery Helicobacter canis Helicobacter canis NCTC 12740 1357400 periphery Helicobacter macacae Helicobacter macacae MIT 99-5501 1358423 periphery Sphingobacterium antarcticus Sphingobacterium antarcticus 4BY 1365176 periphery Thermofilum sp. 1910b Thermofilum sp. 1910b 1366046 core Rhodobacteraceae bacterium HIMB11 Rhodobacteraceae bacterium HIMB11 1366050 periphery Ralstonia pickettii DTP0602 Ralstonia pickettii DTP0602 1367491 periphery Campylobacter coli 76339 Campylobacter coli 76339 1367847 periphery Paracoccus aminophilus Paracoccus aminophilus JCM 7686 1370120 periphery Mycobacterium sp. UMWGJ Mycobacterium sp. UM_WGJ 1370121 periphery Mycobacterium sp. UMWWY Mycobacterium sp. UM_WWY 1370122 periphery Rhizobium undicola Rhizobium undicola ORS992 1370125 periphery Mycobacterium iranicum Mycobacterium iranicum UM_TJL 1378168 periphery Firmicutes bacterium ASF500 Firmicutes bacterium ASF500 1379270 periphery Gemmatimonas sp. AP64 Gemmatimonas sp. AP64 1379281 periphery Desulfonauticus sp. A7A Desulfonauticus sp. A7A 1379698 core candidate division ZIXI candidate division ZIXI bacterium RBG-1 1379701 periphery Sphingomonas sp. FUKUSWIS1 Sphingomonas sp. FUKUSWIS1 1379858 periphery Mucispirillum schaedleri Mucispirillum schaedleri ASF457 1380346 periphery Streptomyces sp. URHA0041 Streptomyces sp. URHA0041 1380347 periphery Geodermatophilaceae bacterium URHB0048 Geodermatophilaceae bacterium URHB0048 1380350 periphery Mesorhizobium sp. URHC0008 Mesorhizobium sp. URHC0008 1380354 periphery Cellulomonas sp. URHE0023 Cellulomonas sp. URHE0023 1380355 periphery Bradyrhizobium sp. URHD0069 Bradyrhizobium sp. URHD0069 1380356 periphery Blastococcus sp. URHD0036 Blastococcus sp. URHD0036 1380358 periphery Halomonas sp. 23GOM1509m Halomonas sp. 23_GOM-1509m 1380367 core Sulfitobacter sp. 20GPM1509m Sulfitobacter sp. 20_GPM-1509m 1380370 periphery Intrasporangiaceae bacterium URHB0013 Intrasporangiaceae bacterium URHB0013 1380380 periphery Ahrensia sp. 13GOM1096m Ahrensia sp. 13_GOM-1096m 1380384 core Tenacibaculum sp. 47AGOM205m Tenacibaculum sp. 47A_GOM-205m 1380386 periphery Mycobacterium sp. URHB0044 Mycobacterium sp. URHB0044 1380387 periphery Alcanivorax sp. 43BGOM46m Alcanivorax sp. 43B_GOM-46m 1380390 periphery Solirubrobacterales bacterium URHD0059 Solirubrobacterales bacterium URHD0059 1380391 core Dongia sp. URHE0060 Dongia sp. URHE0060 1380393 core Geodermatophilaceae bacterium URHA0031 Geodermatophilaceae bacterium URHA0031 1380394 core Rhodospirillales bacterium URHD0088 Rhodospirillales bacterium URHD0088 1380408 periphery Anoxybacillus flavithermus yunnanensis Anoxybacillus flavithermus subsp. yunnanensis str. E13 1380600 core Flaviramulus ichthyoenteri Flaviramulus ichthyoenteri Th78 1380763 periphery Paenibacillus darwinianus Paenibacillus darwinianus 1381123 periphery Aliihoeflea sp. 2WW Aliihoeflea sp. 2WW 1381751 periphery Brevibacterium sp. VCM10 Brevibacterium sp. VCM10 1382230 periphery Asaia platycodi SF21 Asaia platycodi SF2.1 1382303 core Caulobacteraceae bacterium PMMR1 Caulobacteraceae bacterium PMMR1 1382304 periphery Alicyclobacillus macrosporangiidus Alicyclobacillus macrosporangiidus CPP55 1382305 periphery Sporosarcina sp. D27 Sporosarcina sp. D27 1382306 periphery Thermogemmatispora sp. PM5 Thermogemmatispora sp. PM5 1382315 periphery Geobacillus vulcani Geobacillus vulcani PSS1 1382356 periphery Thermomicrobiales sp. KI4 Thermomicrobiales bacterium KI4 1382358 core Anoxybacillus tepidamans Anoxybacillus tepidamans PS2 1382359 periphery Acidobacterium sp. PMMR2 Acidobacterium sp. PMMR2 1384049 periphery Lysinibacillus manganicus Lysinibacillus manganicus DSM26584 1384054 periphery Arenimonas malthae Arenimonas malthae CC-JY-1 1384056 periphery Arenimonas metalli Arenimonas metalli CF5-1 1384057 periphery Lysinibacillus sinduriensis Lysinibacillus sinduriensis BLB-1 1384065 periphery Ruminococcus albus AD2013 Ruminococcus albus AD2013 1384066 periphery Ruminococcus flavefaciens AE3010 Ruminococcus flavefaciens AE3010 1384484 periphery Adlercreutzia equolifaciens Adlercreutzia equolifaciens DSM19450 1385420 periphery Francisella sp. W121067 Francisella sp. W12-1067 1385510 periphery Pontibacillus halophilus Pontibacillus halophilus JSM076056 1385511 core Pontibacillus marinus Pontibacillus marinus BH030004 1385512 periphery Pontibacillus litoralis Pontibacillus litoralis JSM 072002 1385513 periphery Pontibacillus chungwhensis Pontibacillus chungwhensis BH030062 1385514 core Pontibacillus yanchengensis Pontibacillus yanchengensis Y32 1385515 periphery Lysobacter defluvii Lysobacter defluvii IMMIB APB-9 1385517 periphery Lysobacter daejeonensis Lysobacter daejeonensis GH1-9 1385518 periphery Knoellia flava Knoellia flava TL1 1385519 periphery Knoellia aerolata Knoellia aerolata DSM18566 1385520 periphery Knoellia sinensis Knoellia sinensis KCTC 19936 1385521 periphery Knoellia subterranea Knoellia subterranea KCTC 19937 1385935 periphery Leptolyngbya sp. Heron Leptolyngbya sp. Heron Island J 1386089 periphery Intrasporangium oryzae Intrasporangium oryzae NRRL B-24470 1386969 periphery Gordonia amicalis Gordonia amicalis CCMA-559 1387197 periphery Schmidhempelia bombi Candidatus Schmidhempelia bombi str. Bimp 1387312 periphery Methylophilus sp. OH31 Methylophilus sp. OH31 1388763 periphery Pseudomonas mosselii Pseudomonas mosselii SJ10 1389489 periphery Leifsonia xyli cynodontis Leifsonia xyli subsp. cynodontis DSM46306 1390370 periphery Pseudomonas mendocina EGDAQ5 Pseudomonas mendocina EGD-AQ5 1391646 periphery Clostridium bifermentans [Clostridium] bifermentans WYM 1391647 periphery Clostridium sp. AdeTY Clostridium sp. Ade.TY 1392244 periphery Pseudozyma brasiliensis Pseudozyma brasiliensis 1392486 periphery Prevotella sp. HUN102 Prevotella sp. HUN102 1392487 core Eubacterium sp. AB3007 Eubacterium sp. AB3007 1392488 periphery Leeuwenhoekiella sp. HelI48 Leeuwenhoekiella sp. Hel_I_48 1392489 periphery Leeuwenhoekiella sp. MAR2009132 Leeuwenhoekiella sp. MAR_2009_132 1392490 core Sediminibacter sp. HelI10 Sediminibacter sp. Hel_I_10 1392491 core Ruminococcaceae bacterium AE2021 Ruminococcaceae bacterium AE2021 1392493 periphery Lachnospiraceae bacterium AC2031 Lachnospiraceae bacterium AC2031 1392498 periphery Maribacter forsetii Maribacter forsetii DSM18668 1392501 core Selenomonas ruminantium AC2024 Selenomonas ruminantium AC2024 1392502 periphery Selenomonas ruminantium AB3002 Selenomonas ruminantium AB3002 1392540 periphery Acinetobacter nectaris Acinetobacter nectaris CIP 110549 1392838 periphery Bordetella hinzii Bordetella hinzii ATCC51730 1394175 periphery Bifidobacterium sp. 7101 Bifidobacterium sp. 7101 1394176 periphery Bifidobacterium sp. A11 Bifidobacterium sp. A11 1394178 periphery Actinomadura madurae Actinomadura madurae LIID-AJ290 1395513 core Sporolactobacillus laevolacticus Sporolactobacillus laevolacticus DSM442 1395516 periphery Pseudomonas moraviensis Pseudomonas moraviensis R28-S 1395571 periphery Pseudomonas taeanensis Pseudomonas taeanensis MS-3 1395587 periphery Paenibacillus sp. MAEPY2 Paenibacillus sp. MAEPY2 1396141 periphery Haloferula sp. BvORR071 Haloferula sp. BvORR071 1396418 periphery Verrucomicrobium sp. BvORR034 Verrucomicrobium sp. BvORR034 1396858 periphery Marinobacter sp. ES1 Marinobacter sp. ES-1 1397278 core Leucobacter sp. PH1c Leucobacter sp. PH1c 1397284 periphery Serratia sp. H1n Serratia sp. H1n 1397527 periphery Alcanivorax sp. P2S70 Alcanivorax sp. P2S70 1397528 periphery Halomonas sp. PBN3 Halomonas sp. PBN3 1397666 periphery alpha proteobacterium RS24 alpha proteobacterium RS24 1397693 periphery Exiguobacterium undae Exiguobacterium undae DSM14481 1397696 periphery Exiguobacterium marinum Exiguobacterium marinum DSM16307 1397699 periphery Exiguobacterium oxidotolerans Exiguobacterium oxidotolerans JCM 12280 1398491 periphery Borrelia valaisiana Tom4006 Borrelia valaisiana Tom4006 1399115 core Exiguobacterium sp. MH3 Exiguobacterium sp. MH3 1399147 periphery Holospora obtusa Holospora obtusa F1 1399774 periphery Enterobacter cloacae JD6301 Enterobacter cloacae JD6301 1400520 periphery Lactobacillus fabifermentans Lactobacillus fabifermentans T30PCM01 1400524 periphery Pelagibacter ubique HTCC7214 Candidatus Pelagibacter ubique HTCC7214 1400525 periphery Pelagibacter ubique HTCC7217 Candidatus Pelagibacter ubique HTCC7217 1401064 periphery Corynebacterium tuscaniense Corynebacterium tuscaniense DNF00037 1401065 periphery Oligella urethralis Oligella urethralis DNF00040 1401067 periphery Veillonella montpellierensis Veillonella montpellierensis DNF00314 1401078 core Prevotella buccalis DNF00985 Prevotella buccalis DNF00985 1401328 periphery Endolissoclinum faulkneri L5 Candidatus Endolissoclinum faulkneri L5 1402135 periphery Sulfitobacter sp. H3 Sulfitobacter sp. H3 1403313 periphery Bacillus simplex Bacillus simplex BA2H3 1403819 periphery Verrucomicrobium sp. BvORR106 Verrucomicrobium sp. BvORR106 1403946 periphery Streptococcus anginosus DORA7 Streptococcus anginosus DORA_7 1403948 core Varibaculum cambriense DORA20 Varibaculum cambriense DORA_20 1404245 periphery Corynebacterium glycinophilum Corynebacterium glycinophilum AJ 3170 1405296 periphery Chlamydia suis Chlamydia suis MD56 1405498 periphery Staphylococcus simulans Staphylococcus simulans UMC-CNS-990 1406840 periphery Flavobacterium beibuense Flavobacterium beibuense F44-8 1407650 periphery Synechococcus sp. NKBG15041c Synechococcus sp. NKBG15041c 1408164 periphery Betaproteobacteria bacterium MOLA814 Betaproteobacteria bacterium MOLA814 1408224 periphery Sinorhizobium americanum Sinorhizobium americanum CCGM7 1408226 core Vagococcus lutrae Vagococcus lutrae LBD1 1408254 periphery Brevibacillus panacihumi Brevibacillus panacihumi W25 1408287 periphery Fusobacterium nucleatum W1481 Fusobacterium nucleatum W1481 1408303 periphery Bacillus sp. MB2021 Bacillus sp. MB2021 1408304 periphery Butyrivibrio sp. FCS014 Butyrivibrio sp. FCS014 1408306 periphery Butyrivibrio sp. MC2021 Butyrivibrio sp. MC2021 1408310 periphery Prevotella sp. MA2016 Prevotella sp. MA2016 1408311 periphery Oribacterium sp. FC2011 Oribacterium sp. FC2011 1408312 periphery Pseudobutyrivibrio sp. LB2011 Pseudobutyrivibrio sp. LB2011 1408321 periphery Lachnospiraceae bacterium AC2028 Lachnospiraceae bacterium AC2028 1408322 periphery Lachnospiraceae bacterium AC3007 Lachnospiraceae bacterium AC3007 1408323 periphery Lachnospiraceae bacterium MA2020 Lachnospiraceae bacterium MA2020 1408324 periphery Lachnospiraceae bacterium MC2017 Lachnospiraceae bacterium MC2017 1408415 periphery Acholeplasma equifetale Acholeplasma equifetale ATCC29724 1408416 periphery Acholeplasma hippikon Acholeplasma hippikon ATCC29725 1408417 periphery Acholeplasma modicum Acholeplasma modicum ATCC29102 1408418 periphery Acidiphilium angustum Acidiphilium angustum ATCC35903 1408419 periphery Acidocella facilis Acidocella facilis ATCC35904 1408422 periphery Alkaliphilus transvaalensis Alkaliphilus transvaalensis ATCC700919 1408423 core Anaerovibrio lipolyticus Anaerovibrio lipolyticus LB2005 1408424 periphery Bacillus bogoriensis Bacillus bogoriensis ATCC BAA-922 1408427 periphery Bartonella elizabethae Bartonella elizabethae ATCC49927 1408428 periphery Bilophila wadsworthia ATCC49260 Bilophila wadsworthia ATCC49260 1408433 periphery Crocinitomix catalasitica Crocinitomix catalasitica ATCC23190 1408436 periphery Eubacterium cellulosolvens LD2006 [Eubacterium] cellulosolvens LD2006 1408437 core Eubacterium desmolans Eubacterium desmolans ATCC43058 1408438 periphery Facklamia sourekii Facklamia sourekii ATCC700629 1408439 core Fusobacterium perfoetens Fusobacterium perfoetens ATCC29250 1408442 periphery Helicobacter pametensis Helicobacter pametensis ATCC51478 1408444 periphery Legionella fairfieldensis Legionella fairfieldensis ATCC49588 1408445 periphery Legionella sainthelensi Legionella sainthelensi ATCC35248 1408452 periphery Mycobacterium genavense Mycobacterium genavense ATCC51234 1408473 core Prolixibacter bellariivorans Prolixibacter bellariivorans ATCC BAA-1284 1408813 periphery Sphingobacterium sp. H1ai Sphingobacterium sp. H1ai 1408823 periphery Clostridium mangenotii [Clostridium] mangenotii TR 1410608 periphery Bacteroides sp. Ga6A2 Bacteroides sp. Ga6A2 1410609 periphery Treponema sp. C6A8 Treponema sp. C6A8 1410612 periphery Oribacterium sp. P6A1 Oribacterium sp. P6A1 1410613 periphery Prevotella sp. P6B1 Prevotella sp. P6B1 1410616 core Pseudobutyrivibrio sp. MD2005 Pseudobutyrivibrio sp. MD2005 1410617 periphery Ruminococcus sp. FC2018 Ruminococcus sp. FC2018 1410618 core Selenomonas sp. ND2010 Selenomonas sp. ND2010 1410619 periphery Serratia sp. DD3 Serratia sp. DD3 1410620 periphery Shinella sp. DD12 Shinella sp. DD12 1410622 periphery Lachnospiraceae bacterium C6A11 Lachnospiraceae bacterium C6A11 1410624 periphery Lachnospiraceae bacterium FE2018 Lachnospiraceae bacterium FE2018 1410625 core Lachnospiraceae bacterium MD2004 Lachnospiraceae bacterium MD2004 1410626 periphery Lachnospiraceae bacterium NC2004 Lachnospiraceae bacterium NC2004 1410628 periphery Lachnospiraceae bacterium ND2006 Lachnospiraceae bacterium ND2006 1410630 periphery Lachnospiraceae bacterium P6A3 Lachnospiraceae bacterium P6A3 1410631 periphery Lachnospiraceae bacterium P6B14 Lachnospiraceae bacterium P6B14 1410632 periphery Lachnospiraceae bacterium V9D3004 Lachnospiraceae bacterium V9D3004 1410633 periphery Lachnospiraceae bacterium YSB2008 Lachnospiraceae bacterium YSB2008 1410634 core Propionibacteriaceae bacterium P6A17 Propionibacteriaceae bacterium P6A17 1410638 periphery Ruminococcaceae bacterium AB4001 Ruminococcaceae bacterium AB4001 1410650 periphery Butyrivibrio proteoclasticus P6B7 Butyrivibrio proteoclasticus P6B7 1410653 periphery Clostridium lundense Clostridium lundense DSM17049 1410658 core Kandleria vitulina Kandleria vitulina MC3001 1410661 core Lachnospira multipara LB2003 Lachnospira multipara LB2003 1410665 periphery Mitsuokella jalaludinii Mitsuokella jalaludinii DSM13811 1410666 periphery Prevotella brevis Prevotella brevis P6B11 1410668 core Proteiniclasticum ruminis Proteiniclasticum ruminis DSM24773 1410670 periphery Ruminococcus flavefaciens MA2007 Ruminococcus flavefaciens MA2007 1410674 core Sharpea azabuensis Sharpea azabuensis DSM18934 1410676 periphery Succinivibrio dextrinosolvens Succinivibrio dextrinosolvens H5 1411123 core Rhizobiales bacterium YIM77505 Rhizobiales bacterium YIM 77505 1411685 periphery Gammaproteobacteria bacterium MOLA455 Gammaproteobacteria bacterium MOLA455 1414719 periphery Corynebacterium sp. JCB Corynebacterium sp. JCB 1414720 periphery Clostridium sp. JCC Clostridium sp. JCC 1415166 periphery Nocardia nova Nocardia nova SH22a 1415630 periphery Pseudomonas sp. TKP Pseudomonas sp. TKP 1415754 core Marinobacter sp. MCTG268 Marinobacter sp. MCTG268 1415755 periphery Halomonas sp. TG39a Halomonas sp. TG39a 1415756 periphery Oceanicola sp. MCTG156 Oceanicola sp. MCTG156(1a) 1415774 periphery Clostridium botulinum 202F Clostridium botulinum 202F 1415775 periphery Clostridium baratii Clostridium baratii str. Sullivan 1415778 core Porticoccus hydrocarbonoclasticus Porticoccus hydrocarbonoclasticus MCTG13d 1415779 core Polycyclovorans algicola Polycyclovorans algicola TG408 1415780 core Algiphilus aromaticivorans Algiphilus aromaticivorans DG1253 1416752 periphery Microbacterium paraoxydans DH1b Microbacterium paraoxydans DH1b 1416759 periphery Leifsonia aquatica Leifsonia aquatica H1aii 1416760 periphery Myroides odoratimimus Myroides odoratimimus H1bi 1417230 periphery Borrelia persica Borrelia persica No12 1417296 core Defluviimonas sp. 20V17 Defluviimonas sp. 20V17 1419583 periphery Pseudomonas mandelii PD30 Pseudomonas mandelii PD30 1419814 periphery Streptococcus sp. VT 162 Streptococcus sp. VT 162 1423144 periphery Phaeobacter gallaeciensis Phaeobacter gallaeciensis DSM26640 1423321 periphery Bacillus sp. SJS Bacillus sp. SJS 1423724 periphery Lactobacillus apodemi Lactobacillus apodemi DSM16634 1423732 periphery Lactobacillus casei DSM20011 Lactobacillus casei DSM20011 1423734 periphery Lactobacillus composti Lactobacillus composti DSM18527 1423743 periphery Lactobacillus farraginis Lactobacillus farraginis DSM18382 1423747 periphery Lactobacillus fuchuensis Lactobacillus fuchuensis DSM14340 1423748 periphery Lactobacillus gallinarum Lactobacillus gallinarum DSM10532 1423754 periphery Lactobacillus hamsteri Lactobacillus hamsteri DSM5661 1423755 periphery Lactobacillus hayakitensis Lactobacillus hayakitensis DSM18933 1423758 periphery Lactobacillus hominis Lactobacillus hominis DSM23910 1423767 periphery Lactobacillus kitasatonis Lactobacillus kitasatonis DSM16761 1423775 periphery Lactobacillus nodensis Lactobacillus nodensis DSM19682 1423780 periphery Lactobacillus otakiensis Lactobacillus otakiensis DSM19908 1423790 periphery Lactobacillus pasteurii Lactobacillus pasteurii DSM23907 1423806 periphery Lactobacillus sucicola Lactobacillus sucicola DSM21376 1423807 periphery Lactobacillus suebicus Lactobacillus suebicus DSM5007 1423814 periphery Lactobacillus vaginalis Lactobacillus vaginalis DSM5837 1423815 periphery Lactobacillus versmoldensis Lactobacillus versmoldensis DSM14857 1423816 periphery Lactobacillus zeae Lactobacillus zeae DSM20178 1424334 periphery Advenella kashmirensis W13003 Advenella kashmirensis W13003 1427984 core Hepatoplasma crinochetorum Candidatus Hepatoplasma crinochetorum Av 1429046 periphery Rhodococcus rhodochrous Rhodococcus rhodochrous ATCC21198 1429851 periphery Stenotrophomonas maltophilia 5BAI2 Stenotrophomonas maltophilia 5BA-I-2 1429916 periphery Afipia sp. P5210 Afipia sp. P52-10 1430331 periphery Geobacillus sp. G1w1 Geobacillus sp. G1w1 1430440 periphery Magnetospirillum gryphiswaldense Magnetospirillum gryphiswaldense MSR-1 v2 1432050 periphery Rhizobium etli mimosae Rhizobium etli bv. mimosae str. IE4771 1432055 periphery Komagataeibacter rhaeticus Komagataeibacter rhaeticus AF1 1432056 periphery Mannheimia varigena USMARC1261 Mannheimia varigena USDA-ARS-USMARC-1261 1433126 core Rikenellaceae bacterium M3 Rikenellaceae bacterium M3 1433287 periphery Mannheimia varigena USMARC1296 Mannheimia varigena USDA-ARS-USMARC-1296 1434325 periphery Dyadobacter tibetensis Dyadobacter tibetensis Y620-1 1434929 periphery Burkholderia pseudomallei ABCPW111 Burkholderia pseudomallei ABCPW 111 1435051 periphery Bifidobacterium moukalabense Bifidobacterium moukalabense DSM27321 1435356 periphery Rhodococcus pyridinivorans Rhodococcus pyridinivorans SB3094 1437425 core Criblamydia sequanensis Criblamydia sequanensis CRIB-18 1437448 periphery Ochrobactrum rhizosphaerae Ochrobactrum rhizosphaerae SJY1 1437600 periphery Bifidobacterium pullorum Bifidobacterium pullorum DSM20433 1437603 periphery Bifidobacterium mongoliense Bifidobacterium mongoliense DSM21395 1437605 periphery Bifidobacterium actinocoloniiforme Bifidobacterium actinocoloniiforme DSM22766 1437606 periphery Bifidobacterium bohemicum Bifidobacterium bohemicum DSM22767 1437608 periphery Bifidobacterium biavatii Bifidobacterium biavatii DSM23969 1437609 periphery Bifidobacterium callitrichos Bifidobacterium callitrichos DSM23973 1437610 periphery Bifidobacterium reuteri Bifidobacterium reuteri DSM23975 1437824 periphery Castellaniella defragrans Castellaniella defragrans 65Phen 1437882 periphery Pseudomonas nitroreducens HBP1 Pseudomonas nitroreducens HBP1 1439940 periphery Pseudomonas sp. BAY1663 Pseudomonas sp. BAY1663 1440052 periphery Escherichia albertii KF1 Escherichia albertii KF1 1440053 periphery Streptomyces scopuliridis Streptomyces scopuliridis RB72 1440774 periphery Mycobacterium aromaticivorans Mycobacterium aromaticivorans JS19b1 1441629 periphery Pseudomonas cichorii Pseudomonas cichorii JBC1 1441930 periphery Serratia fonticola RB25 Serratia fonticola RB-25 1442598 periphery Arcobacter cibarius Arcobacter cibarius LMG 21996 1442599 periphery Luteimonas huabeiensis Luteimonas huabeiensis HB2 1443111 periphery Sulfitobacter guttiformis Sulfitobacter guttiformis KCTC 32187 1443113 periphery Yersinia enterocolitica LC20 Yersinia enterocolitica LC20 1443122 periphery Clostridium novyi B NCTC9691 Clostridium novyi B str. NCTC9691 1443125 periphery Clostridium botulinum CD BKT12695 Clostridium botulinum C/D str. BKT12695 1443665 periphery Aquimarina macrocephali Aquimarina macrocephali JAMB N27 1444306 periphery Sporolactobacillus terrae Sporolactobacillus terrae DSM11697 1444309 periphery Brevibacillus borstelensis Brevibacillus borstelensis 3096-7 1444310 periphery Bacillus flexus Bacillus flexus T6186-2 1444711 periphery Chlamydia sp. Diamant Chlamydia sp. 'Diamant' 1444712 periphery Chlamydia sp. Rubis Chlamydia sp. 'Rubis' 1444770 periphery Xylella fastidiosa PLS229 Xylella fastidiosa PLS229 1445613 periphery Sciscionella sp. SE31 Sciscionella sp. SE31 1446473 periphery Paracoccus yeei Paracoccus yeei ATCC BAA-599 1448139 periphery Aeromonas hydrophila YL17 Aeromonas hydrophila YL17 1448389 periphery Tomitella biformata Tomitella biformata AHU 1821 1448857 periphery Campylobacter sp. CIT045 Campylobacter sp. CIT045 1448860 periphery Halobellus rufus Halobellus rufus 1449044 periphery Arthrobacter sp. UNC362MFTsu51 Arthrobacter sp. UNC362MFTsu5.1 1449048 periphery Mycobacterium sp. UNC280MFTsu51 Mycobacterium sp. UNC280MFTsu5.1 1449049 periphery Caulobacter sp. UNC358MFTsu51 Caulobacter sp. UNC358MFTsu5.1 1449050 periphery Clostridium sp. KNHs205 Clostridium sp. KNHs205 1449058 periphery Microbacterium sp. UNCCL10 Microbacterium sp. UNCCL10 1449063 periphery Paenibacillus sp. UNC451MF Paenibacillus sp. UNC451MF 1449065 periphery Phyllobacterium sp. UNC302MFCol52 Phyllobacterium sp. UNC302MFCol5.2 1449068 periphery Rhodococcus sp. UNC23MFCrub11 Rhodococcus sp. UNC23MFCrub1.1 1449069 periphery Rhodococcus sp. UNC363MFTsu51 Rhodococcus sp. UNC363MFTsu5.1 1449076 periphery Sphingomonas sp. UNC305MFCol52 Sphingomonas sp. UNC305MFCol5.2 1449080 periphery Thermus sp. YIM77409 Thermus sp. YIM 77409 1449126 periphery Clostridiales bacterium DRI13 Clostridiales bacterium DRI-13 1449335 core Carnobacterium alterfunditum Carnobacterium alterfunditum DSM5972 1449336 periphery Carnobacterium divergens Carnobacterium divergens DSM20623 1449337 periphery Carnobacterium funditum Carnobacterium funditum DSM5970 1449338 periphery Carnobacterium gallinarum Carnobacterium gallinarum DSM4847 1449342 periphery Carnobacterium mobile Carnobacterium mobile DSM4848 1449343 periphery Carnobacterium pleistocenium Carnobacterium pleistocenium FTR1 1449345 periphery Helicobacter rodentium Helicobacter rodentium ATCC700285 1449346 periphery Kitasatospora azatica Kitasatospora azatica KCTC 9699 1449347 periphery Kitasatospora mediocidica Kitasatospora mediocidica KCTC 9733 1449350 periphery Roseivivax halodurans Roseivivax halodurans JCM 10272 1449351 periphery Roseivivax isoporae Roseivivax isoporae LMG 25204 1449353 periphery Streptacidiphilus oryzae Streptacidiphilus oryzae TH49 1449355 periphery Streptomyces yeochonensis Streptomyces yeochonensis CN732 1449357 periphery Thermus tengchongensis Thermus tengchongensis YIM 77401 1449976 periphery Kutzneria albida Kutzneria albida DSM43870 1450525 periphery Flavobacterium succinicans Flavobacterium succinicans LMG 10402 1450694 periphery Bacillus sp. TS2 Bacillus sp. TS-2 1451189 periphery Corynebacterium falsenii Corynebacterium falsenii DSM44353 1451261 periphery Microbacterium sp. MRS1 Microbacterium sp. MRS-1 1452535 periphery Microbacterium sp. CrK32 Microbacterium sp. Cr-K32 1452536 periphery Microbacterium sp. CrK20 Microbacterium sp. Cr-K20 1452718 periphery Pseudomonas sp. RL Pseudomonas sp. RL 1453496 core Hafnia alvei Hafnia alvei FB1 1453498 periphery Flavobacterium aquatile Flavobacterium aquatile LMG 4008 1453500 core Schleiferia thermophila Schleiferia thermophila str. Yellowstone 1453501 core Microbulbifer sp. HZ11 Microbulbifer sp. HZ11 1453503 periphery Pseudomonas pseudoalcaligenes AD6 Pseudomonas pseudoalcaligenes AD6 1453505 periphery Flavobacterium chungangense Flavobacterium chungangense LMG 26729 1454004 periphery Accumulibacter sp. BA93 Candidatus Accumulibacter sp. BA-93 1454007 periphery Pedobacter borealis Pedobacter borealis DSM19626 1454010 core Cellulomonas sp. HZM Cellulomonas sp. HZM 1454202 periphery Photobacterium phosphoreum Photobacterium phosphoreum ANT220 1455608 periphery Haladaptatus cibarius Haladaptatus cibarius D43 1457250 periphery Halapricum salinum Halapricum salinum 1457393 periphery Acetobacter aceti 1023 Acetobacter aceti 1023 1458275 periphery Hylemonella gracilis Niagara Hylemonella gracilis str. Niagara R 1458357 periphery Burkholderia sp. MP1 Burkholderia sp. MP-1 1458427 core Comamonadaceae bacterium H1 Comamonadaceae bacterium H1 1458462 periphery Lachnospiraceae bacterium AC2029 Lachnospiraceae bacterium AC2029 1459636 core Nitrososphaera evergladensis Candidatus Nitrososphaera evergladensis SR1 1460634 periphery Geomicrobium sp. JCM19037 Geomicrobium sp. JCM 19037 1460635 core Geomicrobium sp. JCM19038 Geomicrobium sp. JCM 19038 1460640 periphery Bacillus sp. JCM19046 Bacillus sp. JCM 19046 1461577 periphery Weeksella sp. FF8 Weeksella sp. FF8 1461579 periphery Haemophilus sp. FF7 Haemophilus sp. FF7 1461580 periphery Bacillus sp. JCE Bacillus sp. JCE 1461582 core Jeotgalicoccus sp. 13MG44air Jeotgalicoccus sp. 13MG44_air 1461693 core Actibacterium atlanticum Actibacterium atlanticum 1461694 core Oceanicola sp. 22IIS11g Oceanicola sp. 22II-S11g 1462526 periphery Virgibacillus sp. Vm5 Virgibacillus sp. Vm-5 1462527 periphery Oceanobacillus sp. S5 Oceanobacillus sp. S5 1463820 periphery Actinosporangium sp. NRRLB3428 Actinosporangium sp. NRRL B-3428 1463821 periphery Glycomyces sp. NRRLB16210 Glycomyces sp. NRRL B-16210 1463825 periphery Saccharothrix sp. NRRLB16314 Saccharothrix sp. NRRL B-16314 1463841 periphery Streptomyces sp. NRRLF2580 Streptomyces sp. NRRL F-2580 1463845 periphery Streptomyces sp. NRRLF2890 Streptomyces sp. NRRL F-2890 1463853 periphery Streptomyces sp. NRRLF5008 Streptomyces sp. NRRL F-5008 1463854 periphery Streptomyces sp. NRRLF5053 Streptomyces sp. NRRL F-5053 1463855 periphery Streptomyces sp. NRRLF5065 Streptomyces sp. NRRL F-5065 1463856 periphery Streptomyces sp. NRRLF5123 Streptomyces sp. NRRL F-5123 1463857 periphery Streptomyces sp. NRRLF5126 Streptomyces sp. NRRL F-5126 1463858 periphery Streptomyces sp. NRRLF5135 Streptomyces sp. NRRL F-5135 1463861 periphery Streptomyces sp. NRRLF525 Streptomyces sp. NRRL F-525 1463864 periphery Streptomyces sp. NRRLF5630 Streptomyces sp. NRRL F-5630 1463879 periphery Streptomyces sp. NRRLF6677 Streptomyces sp. NRRL F-6677 1463881 periphery Streptomyces sp. NRRLS118 Streptomyces sp. NRRL S-118 1463885 periphery Streptomyces sp. NRRLS149 Streptomyces sp. NRRL S-149 1463887 periphery Streptomyces sp. NRRLS1777 Streptomyces sp. NRRL S-1777 1463895 periphery Streptomyces sp. NRRLS237 Streptomyces sp. NRRL S-237 1463900 periphery Streptomyces sp. NRRLS337 Streptomyces sp. NRRL S-337 1463901 periphery Streptomyces sp. NRRLS340 Streptomyces sp. NRRL S-340 1463903 periphery Streptomyces sp. NRRLS37 Streptomyces sp. NRRL S-37 1463909 periphery Streptomyces sp. NRRLS474 Streptomyces sp. NRRL S-474 1463917 periphery Streptomyces sp. NRRLS646 Streptomyces sp. NRRL S-646 1463920 periphery Streptomyces sp. NRRLS87 Streptomyces sp. NRRL S-87 1463921 periphery Streptomyces sp. NRRLS920 Streptomyces sp. NRRL S-920 1463926 periphery Streptomyces sp. NRRLWC3626 Streptomyces sp. NRRL WC-3626 1463934 periphery Streptomyces sp. NRRLWC3742 Streptomyces sp. NRRL WC-3742 1463936 periphery Streptomyces sp. NRRLWC3773 Streptomyces sp. NRRL WC-3773 1464048 periphery Micromonospora parva Micromonospora parva 1469245 periphery Thioalkalivibrio sp. HK1 Thioalkalivibrio sp. HK1 1469557 periphery Lacinutrix sp. PAMC27137 Lacinutrix sp. PAMC 27137 1469607 periphery Scytonema hofmanni [Scytonema hofmanni] UTEX 2349 1469613 core Rhodovulum sp. NI22 Rhodovulum sp. NI22 1469948 periphery Clostridium sp. KNHs209 Clostridium sp. KNHs209 1470591 periphery Sphingomonas sp. RIT328 Sphingomonas sp. RIT328 1470593 periphery Pseudomonas sp. RIT357 Pseudomonas sp. RIT357 1471459 periphery Prochlorococcus sp. scB241528O2 Prochlorococcus sp. scB241_528O2 1471522 periphery Prochlorococcus sp. scB245a520K10 Prochlorococcus sp. scB245a_520K10 1472418 core Falsirhodobacter sp. alg1 Falsirhodobacter sp. alg1 1472716 periphery Burkholderia sp. K24 Burkholderia sp. K24 1473546 periphery Lysinibacillus sp. BF4 Lysinibacillus sp. BF-4 1476583 periphery Deinococcus phoenicis Deinococcus phoenicis 1476876 periphery Streptomyces sp. NRRLB24720 Streptomyces sp. NRRL B-24720 1476973 periphery Peptostreptococcaceae bacterium VA2 Peptostreptococcaceae bacterium VA2 1479235 periphery Halomonas sp. HL48 Halomonas sp. HL-48 1479237 core Marinobacter sp. HL58 Marinobacter sp. HL-58 1479238 periphery Oceanicaulis sp. HL87 Oceanicaulis sp. HL-87 1479239 periphery Porphyrobacter sp. HL46 Porphyrobacter sp. HL-46 1479623 periphery Curtobacterium sp. S6 Curtobacterium sp. S6 1480694 periphery Spirochaeta sp. JC230 Spirochaeta sp. JC230 1484157 periphery Pantoea sp. PSNIH2 Pantoea sp. PSNIH2 1484158 periphery Pantoea sp. PSNIH1 Pantoea sp. PSNIH1 1484460 core Psychroserpens sp. PAMC27130 Psychroserpens sp. PAMC 27130 1484479 core Exiguobacterium sp. AB2 Exiguobacterium sp. AB2 1485543 periphery Selenomonas sp. AE3005 Selenomonas sp. AE3005 1485544 periphery Ferriphaselus sp. R1 Ferriphaselus sp. R-1 1485545 periphery Zetaproteobacteria bacterium TAG1 Zetaproteobacteria bacterium TAG-1 1487921 periphery Clostridium sp. HMP27 Clostridium sp. HMP27 1487923 periphery Desulfosporosinus sp. HMP52 Desulfosporosinus sp. HMP52 1487953 periphery Leptolyngbya sp. JSC1 Leptolyngbya sp. JSC-1 1487956 periphery Corynebacterium sp. ATCC6931 Corynebacterium sp. ATCC6931 1488328 periphery Pseudomonas sp. Ant303 Pseudomonas sp. Ant30-3 1489678 core Deinococcus sp. RL Deinococcus sp. RL 1492737 periphery Flavobacterium sp. EM1308 Flavobacterium sp. EM1308 1492738 periphery Flavobacterium sp. EM1321 Flavobacterium sp. EM1321 1492922 core Gammaproteobacteria bacterium MFB021 Gammaproteobacteria bacterium MFB021 1496688 periphery Cyanobium sp. CACIAM14 Cyanobium sp. CACIAM 14 1497679 periphery Listeriaceae bacterium FSLA50209 Listeriaceae bacterium FSL A5-0209 1499498 core Prochlorococcus sp. MIT0601 Prochlorococcus sp. MIT 0601 1499499 core Prochlorococcus sp. MIT0602 Prochlorococcus sp. MIT 0602 1499502 periphery Prochlorococcus sp. MIT0701 Prochlorococcus sp. MIT 0701 1499680 periphery Bacillus sp. MT2 Bacillus sp. MT2 1499683 periphery Clostridium sp. CL6 Clostridium sp. CL-6 1499684 periphery Clostridium sp. CL2 Clostridium sp. CL-2 1499685 periphery Bacillus sp. KW12 Bacillus sp. KW-12 1499686 periphery Pseudomonas sp. 20BN Pseudomonas sp. 20_BN 1499689 periphery Clostridium sp. LF2 Clostridium sp. LF2 1499967 core Bacterium UASB270 bacterium UASB270 1499968 periphery Paenibacillus sp. TCA20 Paenibacillus sp. TCA20 1500257 periphery Rhizobium sp. YR295 Rhizobium sp. YR295 1500259 periphery Rhizobium sp. YR519 Rhizobium sp. YR519 1500281 periphery Chryseobacterium sp. CF284 Chryseobacterium sp. CF284 1500301 periphery Rhizobium sp. CF097 Rhizobium sp. CF097 1500304 periphery Rhizobium sp. CF394 Rhizobium sp. CF394 1500306 periphery Rhizobium sp. OK494 Rhizobium sp. OK494 1500890 periphery Luteibacter sp. 9143 Luteibacter sp. 9143 1500893 periphery Luteibacter sp. 9135 Luteibacter sp. 9135 1500894 periphery Massilia sp. 9096 Massilia sp. 9096 1500897 periphery Burkholderia sp. 9120 Burkholderia sp. 9120 1501230 periphery Paenibacillus sp. MSt1 Paenibacillus sp. MSt1 1501268 periphery Prochlorococcus sp. MIT0604 Prochlorococcus sp. MIT 0604 1501269 periphery Prochlorococcus sp. MIT0801 Prochlorococcus sp. MIT 0801 1501391 periphery Alistipes sp. 627 Alistipes sp. 627 1502724 periphery Devosia sp. LC5 Devosia sp. LC5 1502770 periphery Methylotenera sp. L2L1 Methylotenera sp. L2L1 1502850 periphery Sphingopyxis sp. LC81 Sphingopyxis sp. LC81 1502851 periphery Bosea sp. LC85 Bosea sp. LC85 1502852 periphery Massilia sp. LC238 Massilia sp. LC238 1504319 periphery actinobacterium acAMD5 actinobacterium acAMD-5 1504672 periphery Polaromonas sp. CG912 Polaromonas sp. CG9_12 1504822 periphery Bacterium sp. OL1 Bacterium sp. OL-1 1504823 periphery Bacterium sp. LF3 Bacterium sp. LF-3 1504981 periphery Halomonas sp. KO116 Halomonas sp. KO116 1506583 core Flavobacterium sp. Fl Flavobacterium sp. Fl 1506994 periphery Butyrivibrio sp. AE3004 Butyrivibrio sp. AE3004 1508644 periphery Arthromitus sp. SFBmouseNL Candidatus Arthromitus sp. SFB-mouse-NL 1509403 periphery Acinetobacter sp. HR7 Acinetobacter sp. HR7 1509405 periphery Rhizobium sp. R1200B2 Rhizobium sp. R1-200B2 1510531 periphery Bosea sp. UNC402CLCol Bosea sp. UNC402CLCol 1514668 periphery Ruminococcus sp. HUN007 Ruminococcus sp. HUN007 1515613 periphery Porphyromonas sp. COT239OH1446 Porphyromonas sp. COT-239_OH1446 1515615 periphery Porphyromonas sp. COT290OH860 Porphyromonas sp. COT-290_OH860 1515746 periphery Shewanella sp. YQH10 Shewanella sp. YQH10 1517416 periphery Idiomarina sp. MCCC1A10513 Idiomarina sp. MCCC 1A10513 1517681 periphery Vibrio sp. ER1A Vibrio sp. ER1A 1517682 core Porphyromonadaceae COT184OH4590 Porphyromonadaceae COT-184_OH4590 1519439 core Oscillibacter sp. ER4 Oscillibacter sp. ER4 1519464 periphery Chlorobium sp. GBChlB Chlorobium sp. GBChlB 1521187 periphery Chloroflexus sp. MSG Chloroflexus sp. MS-G 1522072 periphery Sphingobium sp. ba1 Sphingobium sp. ba1 1523503 periphery Pseudomonas sp. ML96 Pseudomonas sp. ML96 1524467 periphery Serratia sp. Ag1 Serratia sp. Ag1 1525715 periphery Paracoccus sp. 4681 Paracoccus sp. 4681 1526927 periphery Planococcus sp. PAMC21323 Planococcus sp. PAMC 21323 1527444 core Atelocyanobacterium thalassa SIO64986 Candidatus Atelocyanobacterium thalassa isolate SIO64986 1528098 core Rickettsiales bacterium Ac37b Rickettsiales bacterium Ac37b 1528106 core Thalassospira australica Thalassospira australica 1530186 core Maribius sp. MOLA401 Maribius sp. MOLA 401 1532557 periphery Achromobacter sp. RTa Achromobacter sp. RTa 1532558 periphery Rhizobium sp. YS1r Rhizobium sp. YS-1r 1535287 core Devosia sp. 172E8 Devosia sp. 17-2-E-8 1535422 core Thalassotalea sp. ND16A Thalassotalea sp. ND16A 1536769 periphery Paenibacillus sp. FSLP40081 Paenibacillus sp. FSL P4-0081 1536770 periphery Paenibacillus sp. FSLR50345 Paenibacillus sp. FSL R5-0345 1536772 periphery Paenibacillus sp. FSLR70273 Paenibacillus sp. FSL R7-0273 1536773 periphery Paenibacillus sp. FSLR70331 Paenibacillus sp. FSL R7-0331 1536774 periphery Paenibacillus sp. FSLH70357 Paenibacillus sp. FSL H7-0357 1536775 periphery Paenibacillus sp. FSLH70737 Paenibacillus sp. FSL H7-0737 1537715 periphery Sphingopyxis sp. MWB1 Sphingopyxis sp. MWB1 1537915 periphery Sulfurospirillum sp. SCADC Sulfurospirillum sp. SCADC 1537917 periphery Sulfuricurvum sp. MLSB Sulfuricurvum sp. MLSB 1537994 periphery Alteromonas sp. LOR Alteromonas sp. LOR 1538295 core Aquabacterium sp. NJ1 Aquabacterium sp. NJ1 1538644 periphery Sphingobacterium sp. ML3W Sphingobacterium sp. ML3W 1539298 periphery Treponema sp. OMZ838 Treponema sp. OMZ 838 1540221 periphery Deinococcus sp. YIM77859 Deinococcus sp. YIM 77859 1540257 periphery Clostridium sp. KNHs214 Clostridium sp. KNHs214 1541065 periphery Myxosarcina sp. GI1 Myxosarcina sp. GI1 1541959 periphery Mollicutes bacterium HR1 Mollicutes bacterium HR1 1541960 core Mollicutes bacterium HR2 Mollicutes bacterium HR2 1545701 periphery Lactobacillus sp. wkB10 Lactobacillus sp. wkB10 1545702 periphery Lactobacillus sp. wkB8 Lactobacillus sp. wkB8 1545915 periphery Sphingomonas sp. 3524ZXX Sphingomonas sp. 35-24ZXX 1547437 periphery Hoeflea sp. BAL378 Hoeflea sp. BAL378 1547445 periphery Francisella sp. FSC1006 Francisella sp. FSC1006 1548151 periphery Helicobacter sp. MIT115569 Helicobacter sp. MIT 11-5569 1548153 periphery Campylobacter sp. MIT975078 Campylobacter sp. MIT 97-5078 1549858 periphery Sphingomonas taxi Sphingomonas taxi 1550073 periphery Sphingomonas sp. 37zxx Sphingomonas sp. 37zxx 1550091 core Sphingobacteriaceae bacterium DW12 Sphingobacteriaceae bacterium DW12 1552123 core Listeriaceae bacterium FSLA50281 Listeriaceae bacterium FSL A5-0281 1552758 periphery Xanthomonas sp. Nyagatare Xanthomonas sp. Nyagatare 1561998 periphery Caenorhabditis tropicalis Caenorhabditis tropicalis 1562701 core Burkholderiaceae sp. Mortierella bacterium endosymbiont of Mortierella elongata FMR23-6 1565129 periphery Shewanella sp. ECSMB14101 Shewanella sp. ECSMB14101 1565314 periphery Sulfurospirillum sp. MES Sulfurospirillum sp. MES 1569209 periphery Paracoccus sp. PAMC22219 Paracoccus sp. PAMC 22219 1577887 periphery Dickeya sp. 2B12 Dickeya sp. 2B12